Citrus Sinensis ID: 011924
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y7K5 | 426 | Uncharacterized WD repeat | yes | no | 0.734 | 0.819 | 0.272 | 2e-28 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | yes | no | 0.32 | 0.120 | 0.289 | 2e-12 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.381 | 0.458 | 0.268 | 2e-10 | |
| Q9D994 | 303 | WD repeat-containing prot | yes | no | 0.303 | 0.475 | 0.268 | 1e-09 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.296 | 0.103 | 0.274 | 3e-09 | |
| O13282 | 643 | Transcription initiation | no | no | 0.225 | 0.166 | 0.314 | 3e-09 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.227 | 0.070 | 0.293 | 5e-09 | |
| Q8H0T9 | 837 | Katanin p80 WD40 repeat-c | no | no | 0.261 | 0.148 | 0.296 | 1e-08 | |
| Q5JTN6 | 314 | WD repeat-containing prot | yes | no | 0.303 | 0.458 | 0.275 | 1e-08 | |
| Q9USR0 | 404 | DNA excision repair prote | no | no | 0.214 | 0.252 | 0.319 | 2e-08 |
| >sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=4 SV=2 | Back alignment and function desciption |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 176/403 (43%), Gaps = 54/403 (13%)
Query: 64 DIQGIPWERLSI-TREKYRQTRLEQYKNYENIPN-SGEGSGKDCKVTKKGASYYEFRRNS 121
D QGIPW +I R+ +R RL Y N + S E D S+YEF+R
Sbjct: 66 DFQGIPWGNKAIGKRKNFRLYRLHTYSLSCNHSDWSPEELSLDTVQVAAEDSFYEFQRFL 125
Query: 122 RSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPG 181
++ H L V +H V +S+ S+ ++L + Q++++ ++
Sbjct: 126 KNPNCLRNHHHLCKSVKVVGEHSVIYVSNNSIRMENTLHDNSVQIIDLKNNI-------- 177
Query: 182 SLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY 241
+ +S L + + G G+ C + G SF +R DD+ N ++++
Sbjct: 178 -----LQKKAISCLDTTNAVGCLGTLYGQY-CIFNFKNG-SFSTRKLSDDS--INHIQLF 228
Query: 242 GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKV 301
F ND V D+ + +R VN
Sbjct: 229 SEKK----FILGCNDGAVYVEDVQRTSPILVYRCSNAVN--------------------- 263
Query: 302 IICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361
C+Q ++P L ++ D+ D +L+D + A L H D +WHPNG
Sbjct: 264 -----CVQLFDETP---LALVCTDSKDAMLIDIRSNSVSAKL-PHSDSVLTGSWHPNGNI 314
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
ATG QD T ++WD+R L +S L + A+ ++ ++ G +A E ADFV ++D K
Sbjct: 315 LATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQADFVQLFDTKL 374
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464
+ Q IDFFGEI+G ++S +SLFIGV D G +LE+ R
Sbjct: 375 -FNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRR 416
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 303 ICLLCLQHSSQ------SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356
+ L+C HS+ SPDG++L G + + L G I +L GH F+ A+H
Sbjct: 676 LLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFH 735
Query: 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV 416
P+G T A+ + DKT ++WD+++ + L G+ +R + ++ DG +A++ + +
Sbjct: 736 PDGETLASASGDKTIKLWDIQD-GTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKL 794
Query: 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+DV G G + ++FS D ++L G DRT
Sbjct: 795 WDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRT 833
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 95/186 (51%), Gaps = 5/186 (2%)
Query: 283 SSYCIILLCRLLNFMTEKVIIC-LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341
S+ C I + R+ +F+ EK ++ L + S S D KL++ D+ + D +G+ +
Sbjct: 126 SADCSIKIWRM-DFVYEKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVK 184
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L GH ++ F ++P+G A+G+ D+T RIW RN ++ + G+ + S+ + D
Sbjct: 185 TLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARN-GNTIFSIPGHEDPVSSVCFNRD 243
Query: 402 GRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLL 460
G Y+A+ V ++D +G + ID I+ + FSP+ + + + T L
Sbjct: 244 GAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNTL-KLW 302
Query: 461 EYGRCR 466
+Y + R
Sbjct: 303 DYQKLR 308
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9D994|WDR38_MOUSE WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Query: 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 370
S+ SPDG+ L+ D+ + + +G+ + L GH + + P+G A+ + D +
Sbjct: 32 SAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHS 91
Query: 371 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R+WD+ S+ + VLKG+ ++ ++ ++ D + +A+ V++V+SG +
Sbjct: 92 IRLWDVAR-SKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVG 150
Query: 431 FFGEISGISFSPDTESLFIGVWDRT 455
I FSP ++SL G WD T
Sbjct: 151 HCDSIQSSDFSPTSDSLATGSWDST 175
|
Mus musculus (taxid: 10090) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG+ + D+ + D+++G +L GH D ++ A+ P+G A+G+ D T +I
Sbjct: 1060 SPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKI 1119
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WD + L+G+ G + S+ ++ DG+ +A+ + ++D SG + G
Sbjct: 1120 WDAAS-GTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGG 1178
Query: 434 EISGISFSPDTESLFIGVWDRT 455
+ ++FSPD + + G D+T
Sbjct: 1179 WVQSVAFSPDGQRVASGSSDKT 1200
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402
GHL +HPN TG+ DKTCR+WD+ SV V G+ + ++ DG
Sbjct: 459 FAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHR-GHSVRVFNGHTQPVTAVAIAPDG 517
Query: 403 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450
MA+A+ +H++D+ +G + G I +SFS ++ L G
Sbjct: 518 HTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSG 565
|
TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDG +L + L +GK + +L GH ++ + + P+G A+G+ D+T R+
Sbjct: 1377 SPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRL 1436
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
W++ + E + L G++ ++RS+ ++SDG +A+ + + ++DVK+G
Sbjct: 1437 WNISS-GECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKTG 1484
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390
L D K + +L GH + +HP G FA+G+ D +IWD+R + KG+
Sbjct: 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHT 143
Query: 391 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450
+ +R+T DGR++ + + V V+D+ +G + G+I + F P L G
Sbjct: 144 RGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATG 203
Query: 451 VWDRT 455
DRT
Sbjct: 204 SADRT 208
|
May participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 370
S+ SPDG++L+ ++ ++ +G+ + L GH + P+G FA+ + D T
Sbjct: 27 SAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCT 86
Query: 371 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R+WD+ ++ + VLKG+ ++ ++ ++ D R +A+ V ++DV+SG +
Sbjct: 87 VRLWDVAR-AKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVG 145
Query: 431 FFGEISGISFSPDTESLFIGVWDRT 455
I FSP L G WD T
Sbjct: 146 HRDSIQSSDFSPTVNCLATGSWDST 170
|
Homo sapiens (taxid: 9606) |
| >sp|Q9USR0|CKN1_SCHPO DNA excision repair protein ckn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ckn1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 331 LVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLK-- 387
L D +G SL GH A W P N A+G+ D TCR+WD+R +S S A +
Sbjct: 173 LCDMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLH 232
Query: 388 -----------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI 435
+ G + + +TSD RY+A+ D + V++++SG +E FG I
Sbjct: 233 NKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE---FGPI 288
|
Adapter protein for ddb1/cullin 4 ubiquitin ligases involved in transcription-coupled nucleotide excision repair. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 224056899 | 445 | predicted protein [Populus trichocarpa] | 0.936 | 1.0 | 0.827 | 0.0 | |
| 224122232 | 445 | predicted protein [Populus trichocarpa] | 0.936 | 1.0 | 0.825 | 0.0 | |
| 225463514 | 442 | PREDICTED: uncharacterized WD repeat-con | 0.930 | 1.0 | 0.785 | 0.0 | |
| 357456029 | 489 | WD-repeat protein-like protein [Medicago | 0.932 | 0.905 | 0.782 | 0.0 | |
| 388496178 | 447 | unknown [Medicago truncatula] | 0.932 | 0.991 | 0.780 | 0.0 | |
| 449463697 | 445 | PREDICTED: uncharacterized WD repeat-con | 0.934 | 0.997 | 0.797 | 0.0 | |
| 297829870 | 447 | WD-40 repeat family protein [Arabidopsis | 0.938 | 0.997 | 0.766 | 0.0 | |
| 297853274 | 445 | WD-40 repeat family protein [Arabidopsis | 0.936 | 1.0 | 0.764 | 0.0 | |
| 18399975 | 447 | transducin/WD40 domain-containing protei | 0.938 | 0.997 | 0.760 | 0.0 | |
| 18405485 | 445 | transducin/WD-40 repeat-containing prote | 0.936 | 1.0 | 0.757 | 0.0 |
| >gi|224056899|ref|XP_002299079.1| predicted protein [Populus trichocarpa] gi|222846337|gb|EEE83884.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/475 (82%), Positives = 416/475 (87%), Gaps = 30/475 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQAR 60
MSHY DDAEYMADEY+MED+DDDMDEEFR R+MG SDSDVDEYDY NNK+AD SAA AR
Sbjct: 1 MSHYQGDDAEYMADEYEMEDVDDDMDEEFRAREMG-SDSDVDEYDYPNNKVADMSAADAR 59
Query: 61 RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRN 120
GKDIQGIPWERLS+TREKYRQTRLEQYKNYENIP+SGE S KDCK+TKKG YYEFRRN
Sbjct: 60 NGKDIQGIPWERLSVTREKYRQTRLEQYKNYENIPHSGEVSRKDCKITKKGGLYYEFRRN 119
Query: 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHP 180
SRSVKSTILHFQLRNLVWAT+KHDVYLMS+FSV HWSSLT S+S VL+VSGHVAP+EKHP
Sbjct: 120 SRSVKSTILHFQLRNLVWATTKHDVYLMSNFSVTHWSSLTCSKSDVLDVSGHVAPTEKHP 179
Query: 181 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 240
GSLLEGFTQTQVSTLAVK LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI
Sbjct: 180 GSLLEGFTQTQVSTLAVKGNLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 239
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
Y SPSGAVHFTASNNDCGVRDFDM KYQLSKHF FPWPVN
Sbjct: 240 YDSPSGAVHFTASNNDCGVRDFDMEKYQLSKHFCFPWPVN-------------------- 279
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
H+S SPDGKLL IVGDNP G+LVDS TGKT+ASL GH DFSFASAWHP+GV
Sbjct: 280 ---------HTSLSPDGKLLTIVGDNPAGMLVDSSTGKTVASLSGHWDFSFASAWHPDGV 330
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
TFATGNQDKTCRIWD RNLSESVAVLKGNLGAIRSIR+TSDG+YMA AEPADFVHVYD K
Sbjct: 331 TFATGNQDKTCRIWDARNLSESVAVLKGNLGAIRSIRFTSDGQYMAMAEPADFVHVYDAK 390
Query: 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYEKEQEIDFFGEISG+SFSPDTE+L+IGVWDRTYGSLLEYGRCRNYSYLDS +
Sbjct: 391 NGYEKEQEIDFFGEISGVSFSPDTEALYIGVWDRTYGSLLEYGRCRNYSYLDSFV 445
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122232|ref|XP_002330572.1| predicted protein [Populus trichocarpa] gi|222872130|gb|EEF09261.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/475 (82%), Positives = 421/475 (88%), Gaps = 30/475 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQAR 60
MSHY DDAEYM DEY+MED+DDDMDEEFR R+MG SDSD+DEYDY NNK+ADTSAA AR
Sbjct: 1 MSHYQGDDAEYMEDEYEMEDVDDDMDEEFRAREMG-SDSDIDEYDYLNNKVADTSAADAR 59
Query: 61 RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRN 120
GKDIQGIPWERLSITR+KYRQTRLEQYKNYENIP+SGE S KDCK+T+KG YYEFRRN
Sbjct: 60 NGKDIQGIPWERLSITRDKYRQTRLEQYKNYENIPHSGEDSKKDCKITEKGGMYYEFRRN 119
Query: 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHP 180
SRSVKSTILHFQLRNLVWAT+KHDVYLMSHFSVIHWSSLT S++ VL+VSGHVAP+EKHP
Sbjct: 120 SRSVKSTILHFQLRNLVWATTKHDVYLMSHFSVIHWSSLTCSKADVLDVSGHVAPTEKHP 179
Query: 181 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 240
GSLLEGFTQTQVSTLAVKD LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI
Sbjct: 180 GSLLEGFTQTQVSTLAVKDNLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 239
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
Y SPSGAVHFTASNND GVRDFDM KYQLSKHFRFPWPVN
Sbjct: 240 YDSPSGAVHFTASNNDHGVRDFDMEKYQLSKHFRFPWPVN-------------------- 279
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
H+S SPDGKLL IVGD+PDG+LVDS +GKT+ SL GHLDFSFASAWHP+GV
Sbjct: 280 ---------HTSLSPDGKLLTIVGDSPDGMLVDSSSGKTVTSLSGHLDFSFASAWHPDGV 330
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
TFATGNQDKTCRIWD+RNLS+S+AVLKGNLGAIRSIRYTSDG+YMA AEPADFVHVYDVK
Sbjct: 331 TFATGNQDKTCRIWDVRNLSKSLAVLKGNLGAIRSIRYTSDGQYMAMAEPADFVHVYDVK 390
Query: 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYEKEQEIDFFGEISG+SFSPDTE+L+IGVWDRTYGSLLEYGRCRNYSYLDS +
Sbjct: 391 NGYEKEQEIDFFGEISGVSFSPDTEALYIGVWDRTYGSLLEYGRCRNYSYLDSFV 445
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463514|ref|XP_002264198.1| PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera] gi|296090035|emb|CBI39854.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/475 (78%), Positives = 408/475 (85%), Gaps = 33/475 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQAR 60
MSH+ D YMADEY MED+DD +DEEF R+MGG +S+VD YDY N+K ADT +AQAR
Sbjct: 1 MSHHQGD---YMADEYKMEDVDD-LDEEFHDREMGGPESEVDVYDYLNSKTADTCSAQAR 56
Query: 61 RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRN 120
RGKDIQGIPWERL+ITREKYRQTR+EQYKNYENIP SG+GS K+CKVTKKG +YEF+ N
Sbjct: 57 RGKDIQGIPWERLTITREKYRQTRVEQYKNYENIPRSGDGSAKECKVTKKGGLFYEFKHN 116
Query: 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHP 180
+RSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLT + S+VLNVSGHVAP EKHP
Sbjct: 117 ARSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTCNMSEVLNVSGHVAPCEKHP 176
Query: 181 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 240
GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICK+LDRPGVSFCSR TYDDNAITNA+EI
Sbjct: 177 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKYLDRPGVSFCSRITYDDNAITNAIEI 236
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
Y S SGAVHF AS+NDCGVRDFDM +QLSKHF FPWPVN
Sbjct: 237 YASSSGAVHFIASSNDCGVRDFDMEDFQLSKHFHFPWPVN-------------------- 276
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
H+S SPDGKLLIIVGDNP+G+LVDS TGKT+ LCGHLD+SFASAW+P+GV
Sbjct: 277 ---------HTSLSPDGKLLIIVGDNPNGMLVDSKTGKTVMPLCGHLDYSFASAWNPDGV 327
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
TFATGNQDKTCRIWD R LS+SVAVLKGNLGAIRSIRYTSDGR+MA AEPADFVHVYDVK
Sbjct: 328 TFATGNQDKTCRIWDARYLSKSVAVLKGNLGAIRSIRYTSDGRFMAMAEPADFVHVYDVK 387
Query: 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYEK+QEIDFFGE+SGI FSPDTESLFIGVWDRTYGSL+EY RCRNY+YLDSLI
Sbjct: 388 NGYEKKQEIDFFGEVSGICFSPDTESLFIGVWDRTYGSLMEYNRCRNYAYLDSLI 442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357456029|ref|XP_003598295.1| WD-repeat protein-like protein [Medicago truncatula] gi|355487343|gb|AES68546.1| WD-repeat protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/474 (78%), Positives = 407/474 (85%), Gaps = 31/474 (6%)
Query: 4 YHADDAEYMADEYDMEDIDD--DMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQARR 61
Y DAEY ADEY+MED++D D+D E R+ G ++SDVDEYDYS++K DT+AAQARR
Sbjct: 45 YRQGDAEYFADEYEMEDVEDEIDIDGESINREGGDAESDVDEYDYSSSKAVDTTAAQARR 104
Query: 62 GKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRNS 121
G+DIQGIPW+ LSITRE+YRQTRL+QYKNYENI +SG+ SGKDCK T KG S+YEFRRNS
Sbjct: 105 GQDIQGIPWDSLSITRERYRQTRLDQYKNYENILHSGDRSGKDCKSTDKGYSFYEFRRNS 164
Query: 122 RSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPG 181
RS KSTILHFQLRNLVWATSKHDVYLMS FSV HWSSLT + S+VLNVSGHVAPSEKHPG
Sbjct: 165 RSAKSTILHFQLRNLVWATSKHDVYLMSQFSVTHWSSLTCTSSEVLNVSGHVAPSEKHPG 224
Query: 182 SLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY 241
SLLEGFT TQVSTLAVKD LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA+EIY
Sbjct: 225 SLLEGFTHTQVSTLAVKDNLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIY 284
Query: 242 GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKV 301
SPSGAVHFTASNNDCG+R+FDM K+QLSKHFRFPWPVN
Sbjct: 285 DSPSGAVHFTASNNDCGIRNFDMEKFQLSKHFRFPWPVN--------------------- 323
Query: 302 IICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361
H+S SPDGKLL+IVGDNP+ +LVDS GKTIA L GHLDFSFAS+W+P+GVT
Sbjct: 324 --------HTSLSPDGKLLLIVGDNPESMLVDSQNGKTIAPLSGHLDFSFASSWNPDGVT 375
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
FATGNQDKTCRIWD+RNLS+SVAVLKGNLGAIRSIR++SDG+YMA AEPADFVHVYDVKS
Sbjct: 376 FATGNQDKTCRIWDMRNLSKSVAVLKGNLGAIRSIRHSSDGKYMAIAEPADFVHVYDVKS 435
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR NYSYLDS+I
Sbjct: 436 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRHNYSYLDSMI 489
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388496178|gb|AFK36155.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/474 (78%), Positives = 406/474 (85%), Gaps = 31/474 (6%)
Query: 4 YHADDAEYMADEYDMEDIDD--DMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQARR 61
Y DAEY ADEY+MED++D D+D E R+ G ++SDVDEYDYS++K DT+AAQARR
Sbjct: 3 YRQGDAEYFADEYEMEDVEDEIDIDGESINREGGDAESDVDEYDYSSSKAVDTTAAQARR 62
Query: 62 GKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRNS 121
G+DIQGIPW+ LSITRE+YRQTRL+QYKNYENI +SG+ SGKDCK T KG S+YEFRRNS
Sbjct: 63 GQDIQGIPWDSLSITRERYRQTRLDQYKNYENILHSGDRSGKDCKSTDKGYSFYEFRRNS 122
Query: 122 RSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPG 181
RS KSTILHFQLRNLVWATSKHDVYLMS FSV HWSSLT + S+VLNVSGHVAPSEKHPG
Sbjct: 123 RSAKSTILHFQLRNLVWATSKHDVYLMSQFSVTHWSSLTCTSSEVLNVSGHVAPSEKHPG 182
Query: 182 SLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY 241
SLLEGFT TQVSTLAVKD LLVAGGFQGELICKHLDRPGVSFC RTTYDDNAITNA+EIY
Sbjct: 183 SLLEGFTHTQVSTLAVKDNLLVAGGFQGELICKHLDRPGVSFCPRTTYDDNAITNAIEIY 242
Query: 242 GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKV 301
SPSGAVHFTASNNDCG+R+FDM K+QLSKHFRFPWPVN
Sbjct: 243 DSPSGAVHFTASNNDCGIRNFDMEKFQLSKHFRFPWPVN--------------------- 281
Query: 302 IICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361
H+S SPDGKLL+IVGDNP+ +LVDS GKTIA L GHLDFSFAS+W+P+GVT
Sbjct: 282 --------HTSLSPDGKLLLIVGDNPESMLVDSQNGKTIAPLSGHLDFSFASSWNPDGVT 333
Query: 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421
FATGNQDKTCRIWD+RNLS+SVAVLKGNLGAIRSIR++SDG+YMA AEPADFVHVYDVKS
Sbjct: 334 FATGNQDKTCRIWDMRNLSKSVAVLKGNLGAIRSIRHSSDGKYMAIAEPADFVHVYDVKS 393
Query: 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR NYSYLDS+I
Sbjct: 394 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRHNYSYLDSMI 447
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463697|ref|XP_004149568.1| PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Cucumis sativus] gi|449526670|ref|XP_004170336.1| PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/474 (79%), Positives = 412/474 (86%), Gaps = 30/474 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQAR 60
MSHYH DD +YMADEY+MEDIDDDMD+E R+ GSDSD DE++ S+++I DT+AAQAR
Sbjct: 1 MSHYHEDDTDYMADEYEMEDIDDDMDDECHDREDEGSDSDADEFN-SSSRIVDTTAAQAR 59
Query: 61 RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRN 120
RG DIQGIPWERLSITREKYR+TRLEQYKNYENIPNSGEGS KDCKVT K SYYEF RN
Sbjct: 60 RGIDIQGIPWERLSITREKYRKTRLEQYKNYENIPNSGEGSEKDCKVTDKACSYYEFCRN 119
Query: 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHP 180
SRSVKSTILHFQLRNLVW+TSKHD YL+S+FSVIHWSSL+ ++S VLNV+GHVAP+EKHP
Sbjct: 120 SRSVKSTILHFQLRNLVWSTSKHDAYLLSNFSVIHWSSLSYTKSDVLNVAGHVAPTEKHP 179
Query: 181 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 240
GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFC RTTYDDNAITNAVEI
Sbjct: 180 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCFRTTYDDNAITNAVEI 239
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
Y S SGA+HFTASNND GVRDFDM K+QLSKHF FPWPVN
Sbjct: 240 YTSASGAIHFTASNNDSGVRDFDMEKFQLSKHFCFPWPVN-------------------- 279
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
H++ +PDGKLL+IVGDNP+GLLVDS TGKT+ASL GHLDFSFASAWH +G+
Sbjct: 280 ---------HAALNPDGKLLVIVGDNPEGLLVDSQTGKTVASLSGHLDFSFASAWHSDGI 330
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
TFATGNQDKTCRIWD+RNLS+SVA LKGNLGAIRSIRY+SDGRYMA AEPADFVHV+DVK
Sbjct: 331 TFATGNQDKTCRIWDVRNLSKSVAALKGNLGAIRSIRYSSDGRYMAMAEPADFVHVFDVK 390
Query: 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSL 474
SGYEKEQEIDFFGEISG+SFSPDTESLFIGVWDRTYGSLLEY R RNYSYLDSL
Sbjct: 391 SGYEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLEYHRRRNYSYLDSL 444
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829870|ref|XP_002882817.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328657|gb|EFH59076.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/476 (76%), Positives = 404/476 (84%), Gaps = 30/476 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEE-FRGRDMGGSDSDVDEYDYSNNKIADTSAAQA 59
MS+Y DDAEYM D D + +D ++ FRG D+G SDSDV+E+DYSNNK+ADTSA QA
Sbjct: 1 MSNYQGDDAEYMEDVDDEMEDVEDDMDDEFRGDDLGASDSDVEEFDYSNNKVADTSAEQA 60
Query: 60 RRGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRR 119
R+GKDIQGIPW+RLSI+REKYRQTRLEQYKNYEN+PNSGE S K CKVT+KG +Y+F R
Sbjct: 61 RKGKDIQGIPWDRLSISREKYRQTRLEQYKNYENVPNSGESSEKVCKVTQKGGLFYDFWR 120
Query: 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKH 179
NSRS+KSTILHFQLRNLVWATSKHDVYLMS+F V H+SSLTS + +VLNV GHVAPSEKH
Sbjct: 121 NSRSIKSTILHFQLRNLVWATSKHDVYLMSNFLVTHYSSLTSGKHEVLNVRGHVAPSEKH 180
Query: 180 PGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVE 239
PGSLLEGFTQTQVSTLAVKD LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA+E
Sbjct: 181 PGSLLEGFTQTQVSTLAVKDDFLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIE 240
Query: 240 IYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTE 299
IY PSGA+HFTASNNDCGVRDFDM +YQL KHFRFPWPVN
Sbjct: 241 IYNKPSGALHFTASNNDCGVRDFDMERYQLVKHFRFPWPVN------------------- 281
Query: 300 KVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG 359
H+S SPDGKLL IVGDNP+GL+VD TGKT+ +L GHLDFSFASAWHP+G
Sbjct: 282 ----------HASLSPDGKLLAIVGDNPEGLIVDPNTGKTLETLSGHLDFSFASAWHPDG 331
Query: 360 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419
VTF+TGNQDKTCR+WD+RNLS+SVAVLKGNLGAIRSIRYTSDG+YMA AEPADFVHVYDV
Sbjct: 332 VTFSTGNQDKTCRVWDIRNLSQSVAVLKGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDV 391
Query: 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYE EQEIDFFGEISGISFSPDTE+LFIGVWDRTYGSLLE+GR RNYSYLDS +
Sbjct: 392 SNGYETEQEIDFFGEISGISFSPDTEALFIGVWDRTYGSLLEFGRRRNYSYLDSYL 447
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297853274|ref|XP_002894518.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297340360|gb|EFH70777.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/475 (76%), Positives = 405/475 (85%), Gaps = 30/475 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQAR 60
MS+Y DDAEYM D D E +DD+DE+FRG DM SDSDVDE+DYSNNKIADTSA QAR
Sbjct: 1 MSNYQGDDAEYMEDV-DDEMDEDDLDEDFRGDDMAVSDSDVDEFDYSNNKIADTSADQAR 59
Query: 61 RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRN 120
+GKDIQGIPW+RLSITREKYRQTRLEQYKNYEN+PNSGE SGKDC T+KGA +Y+F RN
Sbjct: 60 KGKDIQGIPWDRLSITREKYRQTRLEQYKNYENVPNSGESSGKDCMATQKGALFYDFWRN 119
Query: 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHP 180
+RS+KS+ILHFQLRNLVWATSKHDVYLMS + V H+S+LTS + +VLNV GHV+PSEKHP
Sbjct: 120 TRSIKSSILHFQLRNLVWATSKHDVYLMSQYLVSHYSTLTSGKHEVLNVQGHVSPSEKHP 179
Query: 181 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 240
GSLLEGFT+TQVSTLAV+DK LVAGGFQGELICKHLDRPGVS+CSRTTYDDNAITNA+EI
Sbjct: 180 GSLLEGFTKTQVSTLAVRDKFLVAGGFQGELICKHLDRPGVSYCSRTTYDDNAITNAIEI 239
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
Y PSGA+HFTASNNDCGVRDFDM +YQL HFRFPWPVN
Sbjct: 240 YNKPSGALHFTASNNDCGVRDFDMERYQLVNHFRFPWPVN-------------------- 279
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
H+S SPDGKLL IVGDNP+GLLV+ TGKT+A+L GHLDFSFASAWHP+G
Sbjct: 280 ---------HTSLSPDGKLLTIVGDNPEGLLVEPNTGKTLATLSGHLDFSFASAWHPDGF 330
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
TF+TGNQDKTCR+WD+RNLS+SVAVL+GNLGAIRSIRYTSDG+YMA AEPADFVHVYDV
Sbjct: 331 TFSTGNQDKTCRVWDIRNLSKSVAVLRGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDVS 390
Query: 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYE EQEIDFFGEISGISFSPDTE+LFIGVWDRTYGSL+EYGR NYSYLDS +
Sbjct: 391 NGYETEQEIDFFGEISGISFSPDTEALFIGVWDRTYGSLIEYGRRHNYSYLDSFL 445
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18399975|ref|NP_566453.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|334185312|ref|NP_001189878.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|15081811|gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] gi|22655036|gb|AAM98109.1| At3g13340/MDC11_13 [Arabidopsis thaliana] gi|332641814|gb|AEE75335.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332641815|gb|AEE75336.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/476 (76%), Positives = 402/476 (84%), Gaps = 30/476 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEE-FRGRDMGGSDSDVDEYDYSNNKIADTSAAQA 59
MS+Y DDAEYM D D + +D +E FRG D+G SDSDV+E+DYSNNK+ADT+A QA
Sbjct: 1 MSNYRGDDAEYMEDVDDEMEDVEDDMDEEFRGDDLGASDSDVEEFDYSNNKVADTTAEQA 60
Query: 60 RRGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRR 119
R+GKDIQGIPW+RL+I+REKYRQTRLEQYKNYEN+PNSGE S K CKVT+KG +Y+F R
Sbjct: 61 RKGKDIQGIPWDRLNISREKYRQTRLEQYKNYENVPNSGESSEKVCKVTQKGGLFYDFWR 120
Query: 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKH 179
NSRS+KSTILHFQLRNLVWATSKHDVYLMS+F V H+SSLTS + +VLNV GHVAPSEKH
Sbjct: 121 NSRSIKSTILHFQLRNLVWATSKHDVYLMSNFLVTHYSSLTSGKHEVLNVRGHVAPSEKH 180
Query: 180 PGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVE 239
PGSLLEGFTQTQVSTLAVKD LVAGGFQGELICKHLDRPGVSFCSR TYDDNAITNA+E
Sbjct: 181 PGSLLEGFTQTQVSTLAVKDDFLVAGGFQGELICKHLDRPGVSFCSRMTYDDNAITNAIE 240
Query: 240 IYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTE 299
IY PSGA+HFTASNNDCGVRDFDM +YQL KHFRFPWPVN
Sbjct: 241 IYNKPSGALHFTASNNDCGVRDFDMERYQLVKHFRFPWPVN------------------- 281
Query: 300 KVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG 359
H+S SPDGKLL IVGDNP+GL+VD TGKT+ +L GHLDFSFASAWHP+G
Sbjct: 282 ----------HASLSPDGKLLAIVGDNPEGLIVDPNTGKTLETLSGHLDFSFASAWHPDG 331
Query: 360 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419
VTF+TGNQDKTCR+WD+RNLS+SV VLKGNLGAIRSIRYTSDG+YMA AEPADFVHVYDV
Sbjct: 332 VTFSTGNQDKTCRVWDIRNLSQSVTVLKGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDV 391
Query: 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYE EQEIDFFGEISGISFSPDTE+LFIGVWDRTYGSLLE+GR RNYSYLDS +
Sbjct: 392 SNGYETEQEIDFFGEISGISFSPDTEALFIGVWDRTYGSLLEFGRRRNYSYLDSYL 447
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18405485|ref|NP_564699.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|13430436|gb|AAK25840.1|AF360130_1 unknown protein [Arabidopsis thaliana] gi|17979111|gb|AAL47499.1| unknown protein [Arabidopsis thaliana] gi|332195162|gb|AEE33283.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/475 (75%), Positives = 397/475 (83%), Gaps = 30/475 (6%)
Query: 1 MSHYHADDAEYMADEYDMEDIDDDMDEEFRGRDMGGSDSDVDEYDYSNNKIADTSAAQAR 60
MS+Y DDAEYM D D D DD E+FRG DM SDSDVDE+DYSNNKIADTSA QAR
Sbjct: 1 MSNYQGDDAEYMEDVDDEMDEDDLD-EDFRGDDMAASDSDVDEFDYSNNKIADTSADQAR 59
Query: 61 RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRN 120
+GKDIQGIPW+RLSITRE YRQTRLEQYKNYEN+PNSGE SGKDC T+KGA +Y+F RN
Sbjct: 60 KGKDIQGIPWDRLSITRETYRQTRLEQYKNYENVPNSGESSGKDCMATQKGALFYDFWRN 119
Query: 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHP 180
+RS+KS+ILHFQLRNLVWATSKHDVYLMS + V H+S+LTS + VLNV GHV+PSEKHP
Sbjct: 120 TRSIKSSILHFQLRNLVWATSKHDVYLMSQYLVSHYSTLTSGKHDVLNVQGHVSPSEKHP 179
Query: 181 GSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI 240
GSLLEGFT+TQVSTLAV+DK LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA+EI
Sbjct: 180 GSLLEGFTKTQVSTLAVRDKFLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEI 239
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
Y PSGA+HFTASNNDCGVRDFDM +YQL FRFPWPVN
Sbjct: 240 YNKPSGALHFTASNNDCGVRDFDMERYQLVNQFRFPWPVN-------------------- 279
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
H+S SPDGKLL IVGDNP+ LLVD TGKT+A+L GHLDFSFASAWHP+G
Sbjct: 280 ---------HTSLSPDGKLLTIVGDNPESLLVDPNTGKTLATLSGHLDFSFASAWHPDGF 330
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
TF+TGNQDKTCR+WD+RNLS+SVAVL+GNLGAIRSIRYTSDG+YMA AEPADFVHVYDV
Sbjct: 331 TFSTGNQDKTCRVWDIRNLSKSVAVLRGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDVS 390
Query: 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSLI 475
+GYE EQEIDFFGEISGISFSPDTE+LFIGVWDRTYGSL+EY R NYSYLDS +
Sbjct: 391 NGYETEQEIDFFGEISGISFSPDTEALFIGVWDRTYGSLIEYSRRHNYSYLDSFL 445
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:2088150 | 447 | AT3G13340 "AT3G13340" [Arabido | 0.536 | 0.570 | 0.827 | 1.1e-194 | |
| TAIR|locus:2020512 | 445 | AT1G55680 "AT1G55680" [Arabido | 0.536 | 0.573 | 0.819 | 3e-192 | |
| TAIR|locus:2161810 | 447 | AT5G56190 [Arabidopsis thalian | 0.534 | 0.568 | 0.760 | 6.8e-184 | |
| TAIR|locus:2029486 | 449 | AT1G78070 "AT1G78070" [Arabido | 0.517 | 0.547 | 0.534 | 1.1e-131 | |
| TAIR|locus:2034285 | 418 | AT1G36070 "AT1G36070" [Arabido | 0.570 | 0.648 | 0.471 | 1.2e-123 | |
| ASPGD|ASPL0000046275 | 757 | AN10216 [Emericella nidulans ( | 0.355 | 0.223 | 0.359 | 1.1e-37 | |
| UNIPROTKB|G4MRN6 | 878 | MGG_09961 "WD-40 repeat family | 0.258 | 0.140 | 0.375 | 1.8e-32 | |
| POMBASE|SPBC2A9.03 | 426 | SPBC2A9.03 "WD40/YVTN repeat-l | 0.471 | 0.525 | 0.324 | 2.6e-30 | |
| MGI|MGI:1923896 | 303 | Wdr38 "WD repeat domain 38" [M | 0.303 | 0.475 | 0.268 | 1.3e-09 | |
| FB|FBgn0036733 | 553 | U4-U6-60K "U4-U6 small nuclear | 0.307 | 0.264 | 0.278 | 1.5e-09 |
| TAIR|locus:2088150 AT3G13340 "AT3G13340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1148 (409.2 bits), Expect = 1.1e-194, Sum P(2) = 1.1e-194
Identities = 211/255 (82%), Positives = 233/255 (91%)
Query: 29 FRGRDMGGSDSDVDEYDYSNNKIADTSAAQARRGKDIQGIPWERLSITREKYRQTRLEQY 88
FRG D+G SDSDV+E+DYSNNK+ADT+A QAR+GKDIQGIPW+RL+I+REKYRQTRLEQY
Sbjct: 30 FRGDDLGASDSDVEEFDYSNNKVADTTAEQARKGKDIQGIPWDRLNISREKYRQTRLEQY 89
Query: 89 KNYENIPNSGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLM 148
KNYEN+PNSGE S K CKVT+KG +Y+F RNSRS+KSTILHFQLRNLVWATSKHDVYLM
Sbjct: 90 KNYENVPNSGESSEKVCKVTQKGGLFYDFWRNSRSIKSTILHFQLRNLVWATSKHDVYLM 149
Query: 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQ 208
S+F V H+SSLTS + +VLNV GHVAPSEKHPGSLLEGFTQTQVSTLAVKD LVAGGFQ
Sbjct: 150 SNFLVTHYSSLTSGKHEVLNVRGHVAPSEKHPGSLLEGFTQTQVSTLAVKDDFLVAGGFQ 209
Query: 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268
GELICKHLDRPGVSFCSR TYDDNAITNA+EIY PSGA+HFTASNNDCGVRDFDM +YQ
Sbjct: 210 GELICKHLDRPGVSFCSRMTYDDNAITNAIEIYNKPSGALHFTASNNDCGVRDFDMERYQ 269
Query: 269 LSKHFRFPWPVNVSS 283
L KHFRFPWPVN +S
Sbjct: 270 LVKHFRFPWPVNHAS 284
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| TAIR|locus:2020512 AT1G55680 "AT1G55680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 3.0e-192, Sum P(2) = 3.0e-192
Identities = 209/255 (81%), Positives = 230/255 (90%)
Query: 29 FRGRDMGGSDSDVDEYDYSNNKIADTSAAQARRGKDIQGIPWERLSITREKYRQTRLEQY 88
FRG DM SDSDVDE+DYSNNKIADTSA QAR+GKDIQGIPW+RLSITRE YRQTRLEQY
Sbjct: 28 FRGDDMAASDSDVDEFDYSNNKIADTSADQARKGKDIQGIPWDRLSITRETYRQTRLEQY 87
Query: 89 KNYENIPNSGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLM 148
KNYEN+PNSGE SGKDC T+KGA +Y+F RN+RS+KS+ILHFQLRNLVWATSKHDVYLM
Sbjct: 88 KNYENVPNSGESSGKDCMATQKGALFYDFWRNTRSIKSSILHFQLRNLVWATSKHDVYLM 147
Query: 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQ 208
S + V H+S+LTS + VLNV GHV+PSEKHPGSLLEGFT+TQVSTLAV+DK LVAGGFQ
Sbjct: 148 SQYLVSHYSTLTSGKHDVLNVQGHVSPSEKHPGSLLEGFTKTQVSTLAVRDKFLVAGGFQ 207
Query: 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268
GELICKHLDRPGVSFCSRTTYDDNAITNA+EIY PSGA+HFTASNNDCGVRDFDM +YQ
Sbjct: 208 GELICKHLDRPGVSFCSRTTYDDNAITNAIEIYNKPSGALHFTASNNDCGVRDFDMERYQ 267
Query: 269 LSKHFRFPWPVNVSS 283
L FRFPWPVN +S
Sbjct: 268 LVNQFRFPWPVNHTS 282
|
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| TAIR|locus:2161810 AT5G56190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 6.8e-184, Sum P(2) = 6.8e-184
Identities = 194/255 (76%), Positives = 226/255 (88%)
Query: 29 FRGRDMGGSDSDVDEYDYSNNKIADTSAAQARRGKDIQGIPWERLSITREKYRQTRLEQY 88
F GRD+ SDS+V+++D N K ADTSAAQAR GKDIQGIPW+ L++TR+ YR+TRLEQY
Sbjct: 31 FDGRDIDASDSEVEDFDQLN-KAADTSAAQARNGKDIQGIPWDSLTLTRKDYRKTRLEQY 89
Query: 89 KNYENIPNSGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLM 148
KNYENIPNSG+ S K C T+KG+S+YEFRRNSRSV+STILHFQLRNLVWATSKHDVYL+
Sbjct: 90 KNYENIPNSGDESAKKCMNTEKGSSFYEFRRNSRSVRSTILHFQLRNLVWATSKHDVYLL 149
Query: 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQ 208
S++S+ HWSSLT RS++LNV GHVAPSEKHP SLLEGFT+TQVSTLAVK++LLVAGGFQ
Sbjct: 150 SNYSISHWSSLTGCRSEILNVKGHVAPSEKHPESLLEGFTETQVSTLAVKERLLVAGGFQ 209
Query: 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268
GELICKHLDRPGVSFCSRTTY +NAITNAV+IY + SGA+HF ASNNDCGVRDFDM +Y+
Sbjct: 210 GELICKHLDRPGVSFCSRTTYTENAITNAVDIYRNSSGALHFMASNNDCGVRDFDMERYK 269
Query: 269 LSKHFRFPWPVNVSS 283
L + FR+ WPVN SS
Sbjct: 270 LVQLFRYLWPVNHSS 284
|
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| TAIR|locus:2029486 AT1G78070 "AT1G78070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
Identities = 133/249 (53%), Positives = 180/249 (72%)
Query: 38 DSDVDEYDYSNNKIA-DTSAAQARRGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPN 96
DSD D ++ S +K +TSA +AR GKDIQGIPWE L+ TR++YR+ RL YKN+E++
Sbjct: 41 DSDFD-FELSESKTNNETSALEARNGKDIQGIPWESLNYTRDRYRENRLLHYKNFESLFR 99
Query: 97 SGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHW 156
S E K+C +KG ++Y+F+ N+R VKSTI HFQLRNLVWATSKHDVY M+++S++HW
Sbjct: 100 SREELDKECLQVEKGKNFYDFQFNTRLVKSTIAHFQLRNLVWATSKHDVYFMNNYSLMHW 159
Query: 157 SSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHL 216
SSL +VLNV+ + PS K GSL + ++ Q+ST+AVKD L+VAGGFQGELICK +
Sbjct: 160 SSLLQRGKEVLNVAKPIVPSMKQHGSLSQSVSRVQISTMAVKDDLIVAGGFQGELICKKI 219
Query: 217 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 276
+ P V+FC++ T DN ITN+V+IY +PSG++ +NNDC VR FD + L F F
Sbjct: 220 NEPEVAFCTKLTSADNDITNSVDIYNAPSGSLRVMTANNDCTVRLFDATNFALLNRFAFH 279
Query: 277 WPVN-VSSS 284
W VN +S+S
Sbjct: 280 WSVNNISTS 288
|
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| TAIR|locus:2034285 AT1G36070 "AT1G36070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 132/280 (47%), Positives = 186/280 (66%)
Query: 38 DSDVDEYDYSNNKI-ADTSAAQARRGKDIQGIPWERLSITREKYRQTRLEQYKNYENI-- 94
DSD ++ D K+ DTSA +AR GKDIQGI WE R+++R+TRL+QY N+ NI
Sbjct: 7 DSDFED-DCETKKMETDTSAQEARNGKDIQGIQWEGFKYNRDEFRETRLKQYDNFVNILR 65
Query: 95 PNSGEGSGKDC-KVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSV 153
P+S E K+ +V +KG ++Y+F+ N+R V STI+HFQLRNLVWATSKHDVYLM ++S+
Sbjct: 66 PSSREKLDKEHGQVVEKGKNFYDFQFNTRLVTSTIVHFQLRNLVWATSKHDVYLMQNYSL 125
Query: 154 IHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELIC 213
+HWSSL +VLNV+ V P++K PG E ++ QVS++AVK+ L++ GGF GEL+C
Sbjct: 126 MHWSSLLQRGKEVLNVARSVTPTQKLPGLFSEPLSRVQVSSMAVKENLILLGGFDGELLC 185
Query: 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 273
K +++PGV+FC+R + +DNAITN V+IY PSG++ +NNDC +R FD + F
Sbjct: 186 KCVNQPGVAFCTRLSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFTRVSEF 245
Query: 274 RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313
W VN +S L ++ TE CL+ HS +
Sbjct: 246 ALDWSVNNTSVSPDGKLLAVVGDSTE----CLISDSHSGK 281
|
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| ASPGD|ASPL0000046275 AN10216 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 64/178 (35%), Positives = 101/178 (56%)
Query: 291 CRLLNFMTEKVII-CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF 349
C F+T+ + + C +S SPDG+L I+VGD+PD +V++ TG+ + L GH DF
Sbjct: 531 CETNTFLTDHELTHAVNC---TSTSPDGRLRIVVGDSPDAWVVEAETGRPVYPLRGHKDF 587
Query: 350 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG---RYMA 406
FA AW P+ + AT NQDK+ IWD R + ++ ++ RS+R++ G R +
Sbjct: 588 GFACAWSPDMMQVATSNQDKSAIIWDARTW-RMLEKIESDVAGYRSLRFSPVGGGPRTLL 646
Query: 407 TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464
EPAD + + + ++ Y Q DFFGE+ G +SPD +++ D +G +EY R
Sbjct: 647 LCEPADRIVIVNAQT-YRSRQVHDFFGEVGGADYSPDGSTIWAANTDERFGGFMEYDR 703
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| UNIPROTKB|G4MRN6 MGG_09961 "WD-40 repeat family protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 1.8e-32, Sum P(3) = 1.8e-32
Identities = 48/128 (37%), Positives = 74/128 (57%)
Query: 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401
+L H D FA AW +G T ATG QD+ IWD R+ +A ++ + RS+R++
Sbjct: 645 TLRAHRDHGFACAWADDGWTVATGFQDRVVTIWDARSWRRPLASIRTEMAGCRSLRFSPA 704
Query: 402 G---RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYG 457
G R + AE ADFV++ D ++ +E +Q +D F EI G++F P+ LF+ + D T G
Sbjct: 705 GSGQRVLVAAEEADFVNIIDART-FETKQTVDVFSEIGGVAFEPEQGRELFVFLPDSTRG 763
Query: 458 SLLEYGRC 465
+L+ RC
Sbjct: 764 GILQLERC 771
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| POMBASE|SPBC2A9.03 SPBC2A9.03 "WD40/YVTN repeat-like" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 76/234 (32%), Positives = 115/234 (49%)
Query: 235 TNAVEIYGSPSGAVH-FTASNNDCGVR---DFDMGKYQLSKHFRFPWPVNVSSSYCIILL 290
TNAV G+ G F N R D + QL +F N + Y + +
Sbjct: 189 TNAVGCLGTLYGQYCIFNFKNGSFSTRKLSDDSINHIQLFSEKKFILGCNDGAVY-VEDV 247
Query: 291 CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFS 350
R + + + C+Q ++P L ++ D+ D +L+D + A L H D
Sbjct: 248 QRTSPILVYRCSNAVNCVQLFDETP---LALVCTDSKDAMLIDIRSNSVSAKL-PHSDSV 303
Query: 351 FASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410
+WHPNG ATG QD T ++WD+R L +S L + A+ ++ ++ G +A E
Sbjct: 304 LTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQ 363
Query: 411 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464
ADFV ++D K + Q IDFFGEI+G ++S +SLFIGV D G +LE+ R
Sbjct: 364 ADFVQLFDTKL-FNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRR 416
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| MGI|MGI:1923896 Wdr38 "WD repeat domain 38" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 39/145 (26%), Positives = 74/145 (51%)
Query: 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 370
S+ SPDG+ L+ D+ + + +G+ + L GH + + P+G A+ + D +
Sbjct: 32 SAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHS 91
Query: 371 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R+WD+ S+ + VLKG+ ++ ++ ++ D + +A+ V++V+SG +
Sbjct: 92 IRLWDVAR-SKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVG 150
Query: 431 FFGEISGISFSPDTESLFIGVWDRT 455
I FSP ++SL G WD T
Sbjct: 151 HCDSIQSSDFSPTSDSLATGSWDST 175
|
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| FB|FBgn0036733 U4-U6-60K "U4-U6 small nuclear riboprotein factor 60K" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 42/151 (27%), Positives = 73/151 (48%)
Query: 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366
CL + S DG +L+ G + G + D TG+ I L GHL F + PNG ATG+
Sbjct: 400 CLSYHS---DGSVLVTGGLDAFGRVWDLRTGRCIMFLEGHLGAVFGVDFSPNGFHIATGS 456
Query: 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKSGYEK 425
QD TC+IWDLR + V + + I ++Y + G ++ T ++ K+
Sbjct: 457 QDNTCKIWDLRR-RQPVYTIPAHTNLISDVKYQQECGSFLVTCSYDSTTKIWSNKTWQPL 515
Query: 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTY 456
+ ++ + +P+++ + +DRT+
Sbjct: 516 KTLQGHDNKVISVDIAPNSQYIATTSFDRTF 546
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00013109 | hypothetical protein (446 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 37/150 (24%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 306 LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 365
++ + S DG L + L D TG+ + +L GH + + A+ P+G ++
Sbjct: 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111
Query: 366 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425
++DKT ++WD+ + + L+G+ + S+ ++ DG ++A++ + ++D+++G
Sbjct: 112 SRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
Query: 426 EQEIDFFGEISGISFSPDTESLFIGVWDRT 455
GE++ ++FSPD E L D T
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200
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Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 291 CRLLNFMTEKVIICLLCLQHSSQ------SPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344
++ + T K + L H+ SPDG + + L D TGK +A+L
Sbjct: 117 IKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174
Query: 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404
GH + A+ P+G + + D T ++WDL + + L+G+ + S+ ++ DG
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDGYL 233
Query: 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+A+ + V+D+++G + ++ +++SPD + L G D T
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
SPDGKLL + + D TG+ + +L GH A +G A+G+ DKT R+
Sbjct: 18 SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77
Query: 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433
WDL E V L G+ + S+ ++ DGR ++++ + V+DV++G
Sbjct: 78 WDLET-GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136
Query: 434 EISGISFSPDTESLFIGVWDRT 455
++ ++FSPD + D T
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGT 158
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
+ SPDG+ L+ + L D TGK + +L GH + + A+ P+G A+G++D T
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243
Query: 372 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418
R+WDLR V L G+ ++ S+ ++ DG+ +A+ + ++D
Sbjct: 244 RVWDLRTGEC-VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (169), Expect = 8e-13
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 314 SPDGKLLIIVGDNPDGLLV--DSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKT 370
SPDG L +I + DG + D TGK + S GH D S S++ P+G A+G+ D T
Sbjct: 207 SPDGGL-LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SVVSSFSPDGSLLASGSSDGT 264
Query: 371 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430
R+WDLR+ S + L G+ ++ S+ ++ DG+ +A+ V ++D+++G
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 431 FF--GEISGISFSPDTESLFIGVWD 453
G +S +SFSPD L G D
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSD 349
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404
GH A+ P+G ATG+ D T ++WDL E + LKG+ G +R + ++DG Y
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADGTY 65
Query: 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+A+ + ++D+++G +S ++FSPD L D+T
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (145), Expect = 8e-10
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 308 LQHSSQSPDGKLLIIVGDNPDGLLVD---SMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364
+ + SPDG +++ + DG + S GK I +L GH + + A+ P+G A+
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 365 G-NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDVKSG 422
G + D T ++WDLR + ++ L G+ + S+ ++ DG + + +D + ++D+ +G
Sbjct: 173 GSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 423 YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456
+ + SFSPD L G D T
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI 265
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.2 bits (139), Expect = 4e-09
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 20/231 (8%)
Query: 243 SPSGAVHFTASNNDCGVRDFDMG-KYQLSKHFRFPWPVNVSS---------SYCIILLCR 292
SP G + + ++D +R +D+ L VSS S R
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266
Query: 293 LLNFMTEKVIICLLCLQHS-----SQSPDGKLLIIVGDNPDGLLVDSMTGKTIA--SLCG 345
L + + ++ L S + SPDGKLL + L D TGK ++ +L G
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326
Query: 346 HLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404
H + ++ P+G +G D T R+WDLR + S+ ++ DGR
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK--TLEGHSNVLSVSFSPDGRV 384
Query: 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+++ V ++D+ +G ++ + FSPD +SL G D T
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
GK + +L GH + A+ P+G A+G+ D T R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 3e-05
Identities = 71/379 (18%), Positives = 133/379 (35%), Gaps = 64/379 (16%)
Query: 97 SGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQLRNLVWATS-KHDVYLMSHFSVIH 155
S +G+ K ++ G +S SV S + L +S + L +
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 156 WSSLTSSRSQVLNVSGH-------------------VAPSEKHPGSLLEGFTQTQVSTLA 196
S+L V +++ + K S L G + + VS+ +
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS 250
Query: 197 VKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256
LL +G G + D S RT ++ +V SP G + + S+ D
Sbjct: 251 PDGSLLASGSSDGT--IRLWDLRSSSSLLRTLSGHSSSVLSVAF--SPDGKLLASGSS-D 305
Query: 257 CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD 316
VR +D+ +L SS SPD
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSF--------------------------SPD 339
Query: 317 GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376
G LL+ G + + + + + ++ P+G ++G+ D T R+WDL
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Query: 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436
+ + L G+ + S+ ++ DG+ +A+ + + ++D+K+ +
Sbjct: 400 -STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT------------SLK 446
Query: 437 GISFSPDTESLFIGVWDRT 455
+SFSPD + L D +
Sbjct: 447 SVSFSPDGKVLASKSSDLS 465
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-05
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
+G+ + +L GH + A+ P+G A+G+ D T ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.8 bits (99), Expect = 3e-04
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTS-DG 402
GH D + A+ P+G +G+ D T ++WDL N + + L+G + ++ + +S DG
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 403 RYMATAEPAD--FVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIG--------V 451
+ A + V ++D+ + + + ++ ++ ++FSPD + L G +
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 452 WDRTYGSLL 460
WD G L
Sbjct: 183 WDLRTGKPL 191
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 382 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441
LKG+ G + + ++ DG+ +AT + V+D+++G G + ++ S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 442 PDTESLFIGVWDRT 455
D L G D+T
Sbjct: 61 ADGTYLASGSSDKT 74
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.93 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.78 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.76 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.74 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.73 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.72 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.72 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.62 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.62 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.6 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.57 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.56 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.55 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.54 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.48 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.46 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.46 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.44 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.41 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.4 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.4 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.39 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.39 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.39 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.36 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.34 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.27 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.26 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.25 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.23 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.21 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.19 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.18 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.08 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.98 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.98 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.92 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.9 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.9 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.9 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.89 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.87 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.84 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.82 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.8 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.79 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.76 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.74 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.71 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.68 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.68 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.67 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.65 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.64 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.63 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.63 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.63 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.63 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.62 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.59 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.59 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.58 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.52 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.52 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.49 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.48 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.46 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.42 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.39 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.33 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.3 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.3 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.25 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.24 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.19 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.18 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.17 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.09 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.08 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.07 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.05 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.02 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.01 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.99 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.96 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.95 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.82 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.81 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.81 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.78 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.74 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.74 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.7 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.68 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.67 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.66 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.61 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.59 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.59 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.56 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.55 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.55 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.52 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.48 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.45 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.41 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.41 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.37 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.36 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.3 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.27 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.21 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.2 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.11 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.09 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.08 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.07 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 97.06 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.03 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.9 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.83 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.82 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.75 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.7 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.53 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.53 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.53 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.49 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.45 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.38 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.38 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.37 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.29 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.16 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.15 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.14 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.12 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.92 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.92 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.89 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.79 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.7 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.68 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.62 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.47 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.38 | |
| PRK10115 | 686 | protease 2; Provisional | 95.31 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.25 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.2 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.17 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.15 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.1 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.06 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.01 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.86 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.61 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.44 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.27 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 94.26 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.15 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.08 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.94 | |
| PLN02153 | 341 | epithiospecifier protein | 93.91 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.55 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.43 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.35 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.07 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.03 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.94 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.89 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.88 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.48 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.42 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.31 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.29 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.12 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.09 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.71 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.41 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.41 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 91.24 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.18 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.12 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.98 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.92 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.6 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.05 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.91 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.85 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.63 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.31 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.26 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 89.23 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.86 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 88.56 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.44 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 88.33 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 88.28 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.23 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 88.21 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.91 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.51 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.39 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.69 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 86.64 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.59 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 86.13 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 85.72 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 85.06 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 84.85 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 84.51 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 83.81 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 83.69 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 83.68 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 83.66 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.53 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 83.3 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 83.27 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 83.22 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 82.97 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 82.64 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 82.56 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 82.51 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 82.06 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.23 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=316.34 Aligned_cols=262 Identities=21% Similarity=0.328 Sum_probs=238.2
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
||+...+ +++.|+||+.+|.++||+...... ..++.+|.+.+.++.| +|. ...-+++|+.||++++|++.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---~~~l~gH~~~v~~~~f--hP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---LQTLRGHTSRVGAAVF--HPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcce---eEEEeccccceeeEEE--ccCCCccceeeeccCCceeeeccCCC
Confidence 6666666 999999999999999999987633 4788899999999999 887 3445999999999999999887
Q ss_pred eeeeeee-c---cccEEeccCCceEE------EEEEeecccceEE----EEeeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 268 QLSKHFR-F---PWPVNVSSSYCIIL------LCRLLNFMTEKVI----ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 268 ~~~~~~~-~---~~~v~~s~~~~~l~------~~~v~d~~~~~~~----~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.++..+. | ...|.|+|+|..|+ ++++||..++..+ .+...|.+++|.|||.++++||-|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 7776665 3 45677999999997 6899999998765 3445888999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCEEEEEcCCC
Q 011924 334 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEPAD 412 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg 412 (475)
+++|+++..|.+|...|.+++|+|+|..||||+.|++++|||+|. .+++.++.+|..-|+.++|+| .|++|++++.|+
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCeEEEEcccCc
Confidence 999999999999999999999999999999999999999999998 777999999999999999999 789999999999
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+++||...+..++.++.+|.+.|.++..+||+.+|+++++|++++-
T Consensus 411 t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 9999999999999999999999999999999999999999999863
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=286.27 Aligned_cols=322 Identities=18% Similarity=0.232 Sum_probs=259.5
Q ss_pred ccccccccccccceeeecccceeE-EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccccccee
Q 011924 114 YYEFRRNSRSVKSTILHFQLRNLV-WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 191 (475)
Q Consensus 114 ~~~~~~~~~~~~~~~~h~~lr~l~-~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (475)
.|+-+.-++-..+...|-...-++ |++....+.. ..|..+++|+..+....... .| +..-
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~--Kg----------------H~~W 159 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC--KG----------------HKNW 159 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee--cC----------------CccE
Confidence 333343344444445565544444 7776666666 56789999998876543332 22 3357
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEE---eCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY---GSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~---~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
|.|++| +|+.|++|+.+|+|++||..+++.. ...+.+|...|++++|. ..|..+ +|+++|.||+|+|||+..
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcc--cccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC
Confidence 999999 9999999999999999998776655 57788999999999993 233455 599999999999999999
Q ss_pred Ceeeeeee-ccccEEeccCC--ceE------EEEEEeecccceEEEEe----eeeeeEEEC-----------CCC-----
Q 011924 267 YQLSKHFR-FPWPVNVSSSY--CII------LLCRLLNFMTEKVIICL----LCLQHSSQS-----------PDG----- 317 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~--~~l------~~~~v~d~~~~~~~~~~----~~i~~~~~s-----------p~g----- 317 (475)
++++..+. |..+|+.-.-| ..+ .++++|+...|+....+ ..|..++.| |.+
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 99988877 77777743222 233 27999999887654332 255555555 333
Q ss_pred --------------------cEEEEEeCCCcEEEEECC-CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 318 --------------------KLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 318 --------------------~~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
..|++|++|.++++|+.. +.+++.++.+|+.-|..+.||||++++|++|.|+.|++||.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 359999999999999976 45688899999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++ ++.+.++.+|.++|..++|+.|.++|++|+.|.++++|++++.+....+.+|..+|.++.|+|||..+++|+.|..+
T Consensus 397 ~t-Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 397 RT-GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred CC-cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEE
Confidence 88 89999999999999999999999999999999999999999998888899999999999999999999999999655
Q ss_pred c
Q 011924 457 G 457 (475)
Q Consensus 457 ~ 457 (475)
+
T Consensus 476 ~ 476 (480)
T KOG0271|consen 476 R 476 (480)
T ss_pred E
Confidence 3
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=264.83 Aligned_cols=270 Identities=23% Similarity=0.354 Sum_probs=238.8
Q ss_pred EEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 137 VWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 137 ~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
-|++++..|..+ .++.+++|++.+......+.+. ..-|.+.++ .++++++||.|+...|
T Consensus 62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------------------s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------------------SSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EecCCcCeEEeeccCCeEEEEEcccccceeEEecC------------------ceeEEEEEECCCCCeEEecCcCceeEE
Confidence 389888887775 6799999999887766554432 235777777 8999999999999999
Q ss_pred EeCCCC---CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 214 KHLDRP---GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 214 w~~~~~---~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|++... +.....+.+.+|.+.+.+..| -+++ .++++|.|.+..+||+++++.+..|. |.+.|.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f--~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~--------- 190 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRF--LDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVM--------- 190 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEE--cCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEE---------
Confidence 999754 223345678899999999999 5555 49999999999999999999999998 899999
Q ss_pred EEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
+++++| +++.+++|+-|+..+|||++.+.++++|.+|...|.+++|+|+|.-|+||+.|
T Consensus 191 --------------------slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 191 --------------------SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred --------------------EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCe
Q 011924 369 KTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 446 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~ 446 (475)
+++|+||+|. .+.+..+... ..+|++++||..||+|.+|..|..+.+||.-.++....+.+|..+|+++..+|||-.
T Consensus 251 ~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 251 ATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred ceeEEEeecC-CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 9999999998 6666666643 358999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcce
Q 011924 447 LFIGVWDRTYGS 458 (475)
Q Consensus 447 l~~~~~D~~~~~ 458 (475)
|++|+||.+++.
T Consensus 330 v~TgSWDs~lri 341 (343)
T KOG0286|consen 330 VATGSWDSTLRI 341 (343)
T ss_pred EEecchhHheee
Confidence 999999988764
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=296.39 Aligned_cols=301 Identities=23% Similarity=0.368 Sum_probs=257.7
Q ss_pred ccccceeeecccceeE--EecCCCeEEEecCCeEEEEecCCCCce--EEEeccCC-CCCCCCCCCCcc------------
Q 011924 122 RSVKSTILHFQLRNLV--WATSKHDVYLMSHFSVIHWSSLTSSRS--QVLNVSGH-VAPSEKHPGSLL------------ 184 (475)
Q Consensus 122 ~~~~~~~~h~~lr~l~--~~~~~~~v~~~~~~~v~~w~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~------------ 184 (475)
.++++..+|..++-++ |+++.+.||-+++..++|-.+.+.... ..+|.+|. ++..+...|+++
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 4788888898888877 667778899999999999988886653 45677787 888887777765
Q ss_pred ccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 185 EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 185 ~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
+..|-..++|+++ +|+++++|+.||+|+|||... .+|..++..|++.|+++.| +..|+. ++++|.||+||.|
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f--~~~g~~-llssSLDGtVRAw 419 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQF--TARGNV-LLSSSLDGTVRAW 419 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEE--EecCCE-EEEeecCCeEEee
Confidence 1112347888888 999999999999999999664 7899999999999999999 888886 8999999999999
Q ss_pred ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-CcEEEEECCCCceEE
Q 011924 263 DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-PDGLLVDSMTGKTIA 341 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-g~i~iwd~~~~~~~~ 341 (475)
|+..++..++|..|.++.|+ |++..|.|.++.+|+.| -.|++|++++|+.+-
T Consensus 420 DlkRYrNfRTft~P~p~Qfs---------------------------cvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFS---------------------------CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred eecccceeeeecCCCceeee---------------------------EEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 99999999999999999977 99999999999999866 479999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.|.||.++|.+++|+|.+..||++|+|.|||+||+-.....+.++.. ..-+..++|+|+|+.||+++.||.|.+||++.
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 99999999999999999999999999999999999775566777764 45688999999999999999999999999987
Q ss_pred CeeEEEEec--------------------cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEID--------------------FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~--------------------~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+..+..+.+ ....++.|++|+||.+|++|+....+
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 766543332 11358899999999999998766554
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=270.55 Aligned_cols=264 Identities=18% Similarity=0.226 Sum_probs=231.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+..+|.|++| ++..|++|+.|-++++||+.+..+. .+..+|..-|.+|+| +|+|+. |++|+.||+|++||.+
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvaw--sPDgk~-iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAW--SPDGKK-IASGSKDGSIRLWDPK 187 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEE--CCCcch-hhccccCCeEEEecCC
Confidence 4458999999 8999999999999999999987766 566789999999999 999997 9999999999999998
Q ss_pred CCeeee-eee-ccc--------cEEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeC
Q 011924 266 KYQLSK-HFR-FPW--------PVNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 266 ~~~~~~-~~~-~~~--------~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~ 325 (475)
+++++. .+. |.. |+...|..+.++ .++|||...+..+.++. .|+|+.|-.+| ++++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 876543 333 332 333445556554 79999999988876655 78999998665 8999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEe-----------cCCCE-------------------------EEEEeCCC
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWH-----------PNGVT-------------------------FATGNQDK 369 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s-----------p~g~~-------------------------l~t~s~dg 369 (475)
|++|++|+...|++.+.|+||..+|+.++.+ |.++. |++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999999999999999999999988776 43444 99999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
++.+|+-....+++..+.+|..-|..+.||||++++|+|+.|..|++||.++|+.+..+.+|-+.|..++||.|.+.|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 99999998878899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcce
Q 011924 450 GVWDRTYGS 458 (475)
Q Consensus 450 ~~~D~~~~~ 458 (475)
|+.|.+++.
T Consensus 427 ~SkDsTLKv 435 (480)
T KOG0271|consen 427 GSKDSTLKV 435 (480)
T ss_pred cCCCceEEE
Confidence 999988863
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=288.96 Aligned_cols=235 Identities=23% Similarity=0.368 Sum_probs=216.0
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCC----------------------------ceEEEeeecCCCCceeEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------------VSFCSRTTYDDNAITNAVEI 240 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----------------------------~~~~~~~~~~~~~~v~~l~~ 240 (475)
.++|..| ++.+||.|-.|-.|++|.+...+ .....+...+|.++|....|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 5777777 77888888899999999987311 11123557899999999999
Q ss_pred EeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcE
Q 011924 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKL 319 (475)
Q Consensus 241 ~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~ 319 (475)
+|+.++ |+++|.|++||+|.+.+..++-.+. |..||. .+.|+|-|-+
T Consensus 460 --sPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVw-----------------------------dV~F~P~GyY 507 (707)
T KOG0263|consen 460 --SPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVW-----------------------------DVQFAPRGYY 507 (707)
T ss_pred --cccccc-eeeccCCcceeeeecccceeEEEecCCCccee-----------------------------eEEecCCceE
Confidence 999986 9999999999999999999888887 888999 9999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 320 l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
+|+++.|++.++|.....++++.+.||.+.|.|++|||+++|+||||.|.+||+||+.+ +..++.+.||.++|.+++||
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999977 88899999999999999999
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 400 SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
|+|++||+|+.|+.|+|||+.++..+.++.+|.+.|.++.||.+|..|++|+.|.++.-
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999988853
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=241.77 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=223.3
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
|..|++|...+|.....+.. ..++|..|.. +++.|++|+. -.|++||+++.... ....
T Consensus 19 DhTIRfWqa~tG~C~rTiqh------------------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t 78 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQH------------------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVAT 78 (311)
T ss_pred cceeeeeehhcCeEEEEEec------------------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeE
Confidence 57899999999988776543 2357888888 7788888875 57999999987764 3567
Q ss_pred ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeee
Q 011924 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLC 307 (475)
Q Consensus 228 ~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~ 307 (475)
+.+|...|.++.| ..+|++ +++||.||+++|||++...+.+.+.++.+|+
T Consensus 79 ~e~h~kNVtaVgF--~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn--------------------------- 128 (311)
T KOG0315|consen 79 FEGHTKNVTAVGF--QCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN--------------------------- 128 (311)
T ss_pred EeccCCceEEEEE--eecCeE-EEecCCCceEEEEeccCcccchhccCCCCcc---------------------------
Confidence 7889999999999 899998 9999999999999999988889999999999
Q ss_pred eeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-----Cc
Q 011924 308 LQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-----SE 381 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-----~~ 381 (475)
++..+|+-..|+++..+|.|++||+....+...+-. ....|.++...|+|.+++.+...|++.+|++-+. -.
T Consensus 129 --~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 129 --TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred --eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 999999999999999999999999998877666543 4468999999999999999999999999998642 24
Q ss_pred eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 382 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++..++.|.+.+..+.+|||+++||+++.|.+++||++.+. +...++.+|.+.+.+++||.||+||++|+.|...+
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence 78889999999999999999999999999999999999887 45567778999999999999999999999996553
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=239.96 Aligned_cols=266 Identities=18% Similarity=0.298 Sum_probs=225.2
Q ss_pred ccceeeec--ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cC
Q 011924 124 VKSTILHF--QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 199 (475)
Q Consensus 124 ~~~~~~h~--~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~ 199 (475)
-..++.|- |...|-..+++..|..+....|++|+..+++...++.+.+| ...|+++.| +|
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h----------------~kNVtaVgF~~dg 95 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH----------------TKNVTAVGFQCDG 95 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc----------------CCceEEEEEeecC
Confidence 33445554 44556677888888889999999999988887777776653 236888888 99
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPW 277 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~ 277 (475)
+.+++||.||+++|||++... .+....+.++|++|.+ +|+... |++|..+|.|++||+....+...+- ...
T Consensus 96 rWMyTgseDgt~kIWdlR~~~----~qR~~~~~spVn~vvl--hpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 96 RWMYTGSEDGTVKIWDLRSLS----CQRNYQHNSPVNTVVL--HPNQTE-LISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eEEEecCCCceEEEEeccCcc----cchhccCCCCcceEEe--cCCcce-EEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999998732 2445567799999999 999876 9999999999999998776655544 344
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC------ceEEEeecCCCCeE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG------KTIASLCGHLDFSF 351 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------~~~~~l~~h~~~v~ 351 (475)
++. ++++.|+|++|+.+...|.+++|++-+. .++..++.|.+.+.
T Consensus 169 ~i~-----------------------------sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 169 SIQ-----------------------------SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred cee-----------------------------eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence 566 9999999999999999999999998754 35677889999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
.+.+||++++||++|.|.+|+||+....-+.-..+++|...++.++||.||+||++|+.|+.+++|++..++.+++..+|
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 99999999999999999999999998755677788999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEc
Q 011924 432 FGEISGISFS 441 (475)
Q Consensus 432 ~~~i~~l~fs 441 (475)
.....+++..
T Consensus 300 ~K~~vc~~ln 309 (311)
T KOG0315|consen 300 HKAAVCVALN 309 (311)
T ss_pred ccccEEEEee
Confidence 8877777653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=262.64 Aligned_cols=329 Identities=18% Similarity=0.256 Sum_probs=255.6
Q ss_pred CHHHHHHHHHhcccCccCCCCCCCCcCcccccccccccccccccccccccceeeecc-------cceeEEecCCCeEEEe
Q 011924 76 TREKYRQTRLEQYKNYENIPNSGEGSGKDCKVTKKGASYYEFRRNSRSVKSTILHFQ-------LRNLVWATSKHDVYLM 148 (475)
Q Consensus 76 ~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------lr~l~~~~~~~~v~~~ 148 (475)
.--.|++.|.-+|.--..++.........|.+ +..|+ ......+...+.|.. ...+.|.+.+..|.+.
T Consensus 40 ~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~p---p~~~~--~dp~~~~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltg 114 (464)
T KOG0284|consen 40 PVCNYRQNRRWQYDRDRALLQPDSSYIIDLVP---PSLYL--DDPSSAFTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTG 114 (464)
T ss_pred HHHHHHHHHhhcccccccccCCCchhhhcccC---hhhcc--CCcccccccceEeccccccccceeeEEEcCCCceeEee
Confidence 45678888888887222222221112222211 11122 222334444445543 2234488888888875
Q ss_pred c-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 149 S-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
+ .+.+.+|+..+ +++. .+...+..+|.+|.| ++.++++|..+|.|++|+..-+...
T Consensus 115 s~SGEFtLWNg~~------fnFE------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk--- 173 (464)
T KOG0284|consen 115 SQSGEFTLWNGTS------FNFE------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK--- 173 (464)
T ss_pred cccccEEEecCce------eeHH------------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH---
Confidence 4 47889998643 2221 122335678999999 9999999999999999998765544
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
....+|...|.+++| +|+... |+++|.||+|+|||....+.-+.+. |.+.|.
T Consensus 174 ~~~ahh~eaIRdlaf--SpnDsk-F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk------------------------ 226 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAF--SPNDSK-FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK------------------------ 226 (464)
T ss_pred HhhHhhhhhhheecc--CCCCce-eEEecCCCeEEEEeccCCchhheeccCCCCcc------------------------
Confidence 344456689999999 998886 9999999999999998877766666 889999
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 384 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~ 384 (475)
+++|+|...++++++.|..|++||.++|.++.++.+|+..|.++.|+|++++|+|+|.|..++++|+|. -+.+.
T Consensus 227 -----svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~ 300 (464)
T KOG0284|consen 227 -----SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELF 300 (464)
T ss_pred -----eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 67788
Q ss_pred EEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 385 VLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 385 ~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
++++|...|+++.|+| ...+|.+|+.||.|..|.+...+++..+ ..|.+.|++++|+|=|..|++|+.|.+++-+-+-
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999999999999 5568999999999999998854444443 3588999999999999999999999988654443
Q ss_pred E
Q 011924 463 G 463 (475)
Q Consensus 463 ~ 463 (475)
.
T Consensus 381 r 381 (464)
T KOG0284|consen 381 R 381 (464)
T ss_pred C
Confidence 3
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=253.94 Aligned_cols=261 Identities=17% Similarity=0.249 Sum_probs=221.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
....|++|+| +|.+||+|.++|.+++|+.+... ..++..|.++|.+|.| +..|.+ +++++-|+++.+||..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKW--nk~G~y-ilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKW--NKKGTY-ILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEE--cCCCCE-EEeccCCccEEEEecc
Confidence 4458999999 69999999999999999976422 3577889999999999 999997 9999999999999999
Q ss_pred CCeeeeeee-cccc---EEeccCCceE-----EEEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 266 KYQLSKHFR-FPWP---VNVSSSYCII-----LLCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 266 ~~~~~~~~~-~~~~---v~~s~~~~~l-----~~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
++.....|. +..+ |.+-.+.... +.++|+-+....+..+.. .|.++.|+|.|.+|+++++|++++||
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 999888887 3333 3322221111 135565555444444433 78899999999999999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 333 DSMTGKTIASLCGHLDFSFASAWHPNG---------VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 333 d~~~~~~~~~l~~h~~~v~~~~~sp~g---------~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
....+.....|.+|...|+.+.|+|.| ..+++++.|++|++||+.. +.+++.+..|..+|.+++|+|+|+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR 465 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc
Confidence 998888999999999999999999954 4789999999999999977 899999999999999999999999
Q ss_pred EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 404 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+||+|+.||.|+||++++++..+.+.+ .+.|..++|+.+|.+|.++..|+.+.
T Consensus 466 ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred EEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCce
Confidence 999999999999999999988877765 56699999999999999999998764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=257.71 Aligned_cols=224 Identities=21% Similarity=0.258 Sum_probs=202.4
Q ss_pred CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-c---cccEEeccC--CceEE------EEEEeecc
Q 011924 230 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-F---PWPVNVSSS--YCIIL------LCRLLNFM 297 (475)
Q Consensus 230 ~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~---~~~v~~s~~--~~~l~------~~~v~d~~ 297 (475)
+...++..+.| +++++. |++||.+|.+++|...+...+.+|. | ...+.|+|. +..++ ++++|+..
T Consensus 173 gd~rPis~~~f--S~ds~~-laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSF--SRDSKH-LATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEe--ecCCCe-EEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 45567788888 999985 9999999999999999988888777 4 455668987 33443 68999998
Q ss_pred cceEEEEe----eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 298 TEKVIICL----LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 298 ~~~~~~~~----~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
+..++..+ ..|..++|+|+|++|++++.|.+-++||+++++.+...+||...|++++|+|||.+++||+.|..-||
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 86665443 37889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC-CCCeEEEEEe
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP-DTESLFIGVW 452 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp-dg~~l~~~~~ 452 (475)
||+|+ ++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++...++.++..|..-|+.+.|+| .|.+|++++.
T Consensus 330 WDlRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 330 WDLRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 99998 899999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred cCCcc
Q 011924 453 DRTYG 457 (475)
Q Consensus 453 D~~~~ 457 (475)
|+++.
T Consensus 409 D~t~k 413 (459)
T KOG0272|consen 409 DNTVK 413 (459)
T ss_pred Cccee
Confidence 99876
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=269.06 Aligned_cols=199 Identities=23% Similarity=0.314 Sum_probs=185.9
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
|..+|...+| +.++|++++.|+++++|.+.+. .|.....+|..+|+.+.| +|-|-+ |+++|.|++.++|...
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F--~P~GyY-Fatas~D~tArLWs~d 523 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQF--APRGYY-FATASHDQTARLWSTD 523 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEe--cCCceE-EEecCCCceeeeeecc
Confidence 4458998888 8999999999999999999874 345777899999999999 999865 9999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
..++.+.|. |-..|. |++|+|+..++++|+.|.++++||+.+|..++.|.
T Consensus 524 ~~~PlRifaghlsDV~-----------------------------cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVD-----------------------------CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred cCCchhhhcccccccc-----------------------------eEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 988888887 888888 99999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
||.++|.+++|+|+|++|++|+.|+.|.|||+.+ ++++..+.+|.+.|.++.||.+|.+||+|+.|++|++||+...
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999987 8899999999999999999999999999999999999998653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=233.47 Aligned_cols=227 Identities=18% Similarity=0.297 Sum_probs=198.9
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceE--EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
..|+.++. ..+.|++++.|..+.+|++......+ ..+.+.+|...|+.+.. +++|++ ++++|.|+++|+||+
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~--s~dg~~-alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL--SSDGNF-ALSASWDGTLRLWDL 92 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE--ccCCce-EEeccccceEEEEEe
Confidence 36777777 57899999999999999997654322 34667789999999999 999996 999999999999999
Q ss_pred CCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 265 GKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.+++..+.|. |...|. +++|+|+.+.+++|+.|.+|.+|++..+ +..++
T Consensus 93 ~~g~~t~~f~GH~~dVl-----------------------------sva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~ 142 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVL-----------------------------SVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTI 142 (315)
T ss_pred cCCcEEEEEEecCCceE-----------------------------EEEecCCCceeecCCCcceeeeeeeccc-EEEEE
Confidence 9998888887 888999 9999999999999999999999998644 44444
Q ss_pred ec--CCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 344 CG--HLDFSFASAWHPN--GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 344 ~~--h~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.. +.+.|.|++|+|+ ..+|++++.|++|++||+++ .+....+.+|.+.++.+++||||..+++|+.||.+.+||+
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 43 3789999999996 78999999999999999987 7888899999999999999999999999999999999999
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
..++.+. ...+...|.+++|+|+...|+.+.
T Consensus 222 ~~~k~ly-sl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 222 NEGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred cCCceeE-eccCCCeEeeEEecCCceeEeecc
Confidence 9998854 456889999999999977776653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=229.46 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=193.7
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.+.|..+.. +|++.++++.||.+++||+..... .+.+.+|...|.+++| ++++.. +++||.|.+|++|++..
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~---t~~f~GH~~dVlsva~--s~dn~q-ivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES---TRRFVGHTKDVLSVAF--STDNRQ-IVSGSRDKTIKLWNTLG 136 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecCCcE---EEEEEecCCceEEEEe--cCCCce-eecCCCcceeeeeeecc
Confidence 346776666 999999999999999999987643 3778899999999999 999986 99999999999999865
Q ss_pred Ceeeeeeec--cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLSKHFRF--PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~~~~~~--~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
......... ..=|+ |+.|+|+ ..++++++.|+++++||+++-+..+.
T Consensus 137 ~ck~t~~~~~~~~WVs-----------------------------cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVS-----------------------------CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred cEEEEEecCCCcCcEE-----------------------------EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence 433332222 34566 9999997 78999999999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+.||++.++.+++||||.++++|+.||.+.+||++. ++.+..+. +...|.+++|+|+.-+|+.+... .|+|||+.++
T Consensus 188 ~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~-~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE-GKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred cccccccEEEEEECCCCCEEecCCCCceEEEEEccC-CceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence 999999999999999999999999999999999987 67676665 56789999999998777766654 5999999998
Q ss_pred eeEEEEecc---------CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 423 YEKEQEIDF---------FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 423 ~~~~~~~~~---------~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+..+..- .-...+++||+||..|++|-.|+.++
T Consensus 265 ~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 265 AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 776655421 11346789999999999999998774
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=230.75 Aligned_cols=231 Identities=19% Similarity=0.288 Sum_probs=200.8
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|++|.| +.++|++++.||.+.|||..+.... ..+.-...-|-..+| +|+|+. +++|+.|....||++.+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---haipl~s~WVMtCA~--sPSg~~-VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAY--SPSGNF-VACGGLDNKCSIYPLSTR 129 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccce---eEEecCceeEEEEEE--CCCCCe-EEecCcCceeEEEecccc
Confidence 37999999 9999999999999999998766544 223334556667777 999996 999999999999999754
Q ss_pred ------eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 268 ------QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 268 ------~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
+..+.+. |.+.+. |..|-+ ...|++++.|.++.+||+++|+.+
T Consensus 130 d~~g~~~v~r~l~gHtgylS-----------------------------cC~f~d-D~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLS-----------------------------CCRFLD-DNHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred cccccceeeeeecCccceeE-----------------------------EEEEcC-CCceEecCCCceEEEEEcccceEE
Confidence 2344455 777777 888887 557889999999999999999999
Q ss_pred EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 341 ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+.||.+.|.+++++| +++.+++|+-|++.+|||+|. +.+++.+.+|.+-|.+++|.|+|.-+++|+.|++.++||+
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 99999999999999999 999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 420 KSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 420 ~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....+..+.. ...+|++++||..|++|++|..|.+..
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN 298 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCcee
Confidence 99888877764 236899999999999999986666543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-31 Score=230.66 Aligned_cols=264 Identities=16% Similarity=0.218 Sum_probs=227.8
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|.++.| +|.+|++||.|..|.+|++......+ -...+|++.|..+.| .++++. +++++.|.+|+.||++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~--~~lkgHsgAVM~l~~--~~d~s~-i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF--WVLKGHSGAVMELHG--MRDGSH-ILSCGTDKTVRGWDAE 120 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccccccce--eeeccccceeEeeee--ccCCCE-EEEecCCceEEEEecc
Confidence 4558999999 89999999999999999976544332 345589999999999 999986 9999999999999999
Q ss_pred CCeeeeeee-ccccEEecc---CCceE-------EEEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 266 KYQLSKHFR-FPWPVNVSS---SYCII-------LLCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~---~~~~l-------~~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
+++.++.++ |...|+..+ -|..+ .++++||+.+...+++.. .++++.|..++..+.+|+-|+.|++
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceee
Confidence 999998887 555555222 12222 379999999888877763 6779999999999999999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---CceEEEEecCCC----ceEEEEEccCCCE
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---SESVAVLKGNLG----AIRSIRYTSDGRY 404 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~---~~~~~~~~~~~~----~v~~l~~spdg~~ 404 (475)
||++.+..+..+.||.++|+.+..+|+|.++.+-+.|.++++||+|-. .+++..+.+|.. ....++|+|++++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 999999999999999999999999999999999999999999999842 345777777542 3457899999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.+|+.|..+++||..+...+..+.+|.+.|.++.|+|....|.+++.|.++
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 9999999999999998878888999999999999999999999999999875
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=239.57 Aligned_cols=269 Identities=17% Similarity=0.226 Sum_probs=234.0
Q ss_pred EecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
+-+....++.+ .+.+++.|+..++.... .+.|| .. .|.++++ .|++||+++.|=.+.+|
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~--~LrGH---------------t~-sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELER--SLRGH---------------TD-SVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhh--hhhcc---------------cc-ceeEEEEecCccEEEecCCccchhhe
Confidence 44444444444 47999999999887622 22222 22 3788888 78999999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v 293 (475)
++... ..|.+...+|.-.|.++.| -|.|.. +++++.|.+|+.|++.++-++.+|. ++.=|.
T Consensus 178 d~~~~--~~c~ks~~gh~h~vS~V~f--~P~gd~-ilS~srD~tik~We~~tg~cv~t~~~h~ewvr------------- 239 (406)
T KOG0295|consen 178 DFDTF--FRCIKSLIGHEHGVSSVFF--LPLGDH-ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR------------- 239 (406)
T ss_pred eHHHH--HHHHHHhcCcccceeeEEE--EecCCe-eeecccccceeEEecccceeEEeccCchHhEE-------------
Confidence 98754 3345677788889999999 788876 9999999999999999999999998 666677
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC----------C----
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN----------G---- 359 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~----------g---- 359 (475)
.++.+.||.++|+++.|.++++|-+.++++...+..|+-+|-+++|-|. |
T Consensus 240 ----------------~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 240 ----------------MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred ----------------EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 8899999999999999999999999999999999999999999999773 2
Q ss_pred -CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 360 -VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 360 -~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.++.++++|++|++||+.. +.++.++.+|...|+.++|+|.|+||+++..|+++++||++++.+...+..|..-++++
T Consensus 304 ~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred ccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 5899999999999999976 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCcceE
Q 011924 439 SFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~l 459 (475)
.|+.+..++++|+-|.+++.+
T Consensus 383 Dfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred ecCCCCceEEeccccceeeee
Confidence 999999999999999887654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=251.78 Aligned_cols=232 Identities=15% Similarity=0.224 Sum_probs=207.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|..+.| +|+.|++|+..|.+.+|+...-... .+...|.++|.++.| +++|.+ +++|..+|.|++|+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---tilQaHDs~Vr~m~w--s~~g~w-miSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---TILQAHDSPVRTMKW--SHNGTW-MISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHH---HHhhhhcccceeEEE--ccCCCE-EEEcCCCceEEecccchh
Confidence 47888888 8999999999999999987432222 345789999999999 999997 999999999999998654
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
....... +...|+ +++|||+...|+++++||.|+|||....+....|.||
T Consensus 171 nVk~~~ahh~eaIR-----------------------------dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH 221 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIR-----------------------------DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH 221 (464)
T ss_pred hhHHhhHhhhhhhh-----------------------------eeccCCCCceeEEecCCCeEEEEeccCCchhheeccC
Confidence 4433333 458888 9999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
.-.|.+++|||...++|+|+.|..|++||.++ ++++.++.+|...|..+.|+|++++|++++.|..+++||+++.+.+.
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF 300 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence 99999999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCeEEEEEcCCC-CeEEEEEecCCcc
Q 011924 427 QEIDFFGEISGISFSPDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 427 ~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~ 457 (475)
.+.+|...+.++.|+|-. ..|.+|++|+.+.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceE
Confidence 999999999999999955 4566789998764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=256.43 Aligned_cols=235 Identities=20% Similarity=0.286 Sum_probs=211.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
-.|.+++. +|.+|++|+.|.++++|.++++. ...|.....+|...|.+|++ +..+..+|+++|.|+++++|++..
T Consensus 366 e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCC
Confidence 36788884 67799999999999999994433 44455667889999999999 888888899999999999999976
Q ss_pred Ceeee---e-------eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 267 YQLSK---H-------FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 267 ~~~~~---~-------~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
.+... . ..|...|+ |++++|+.+++|+|+.|.+.+||++..
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN-----------------------------~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDIN-----------------------------CVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred cccccccceehhhHHHHhhccccc-----------------------------ceEecCCCceEEecccccceeeecccC
Confidence 22111 1 11667777 999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
.....+|.||...|+|+.|+|..+.+||+|.|+||+||.+.+ .++++++.+|..+|..+.|-.+|+.|++++.||-|+|
T Consensus 495 ~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999999999999999999999999999977 8999999999999999999999999999999999999
Q ss_pred EECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|+++++.+...+-.|...|++++-+|.+..+++|+.|+.+
T Consensus 574 Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRI 613 (775)
T ss_pred EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEE
Confidence 9999999999999999999999999999999999999765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=233.47 Aligned_cols=247 Identities=18% Similarity=0.246 Sum_probs=220.9
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..-|.|+++ .+.++++|+.|++|+|||+.++... .++.+|-..|..+++ |+--.+ +++++.|+.|+.||++.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vav--S~rHpY-lFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAV--SKRHPY-LFSAGEDKQVKCWDLEY 224 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---Eeecchhheeeeeee--cccCce-EEEecCCCeeEEEechh
Confidence 357889998 6789999999999999999976655 566789999999999 888776 88999999999999999
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
.+.++++. |-..|. |++..|.-..|++|+.|..++|||+++...+..+.|
T Consensus 225 nkvIR~YhGHlS~V~-----------------------------~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVY-----------------------------CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred hhhHHHhccccceeE-----------------------------EEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 99999887 788888 999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|..+|.++.+.|-...+++||.|++|++||++. ++...++..|...|++++.+|....+|+++.|+ |+-|++..|..+
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~ 353 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL 353 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchh
Confidence 999999999999777899999999999999998 888899999999999999999999999999886 999999999988
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecceeeeccc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDSL 474 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~~l~~~ 474 (475)
..+.+|.+-|..++...|| ++++|+..|.+ .+..+..+++++.+..+
T Consensus 354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~-~fwdwksg~nyQ~~~t~ 400 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSI-MFWDWKSGHNYQRGQTI 400 (460)
T ss_pred hccccccceeeeeeeccCc-eEEEcCCceEE-EEEecCcCccccccccc
Confidence 8889999999999998886 66677655444 66777788888877544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-32 Score=250.25 Aligned_cols=233 Identities=19% Similarity=0.283 Sum_probs=205.7
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.|+++.| .+.+|++||.|+.|+||++...+ .|.+++.+|..+|..+.| ++.|.. |+++|.|+.|++||+++|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~--s~~g~~-fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASF--NNCGTS-FLSASFDRFLKLWDTETG 290 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhc--cccCCe-eeeeecceeeeeeccccc
Confidence 5777777 78999999999999999998744 346899999999999999 999987 999999999999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
+++..|.....+. |+.|.|++ +.+++|+.|+.|+.||+++++.++.+..|
T Consensus 291 ~~~~~f~~~~~~~-----------------------------cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 291 QVLSRFHLDKVPT-----------------------------CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred eEEEEEecCCCce-----------------------------eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 9999999888888 99999988 89999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-------------------------------eE------------
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-------------------------------SV------------ 383 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-------------------------------~~------------ 383 (475)
.+.|..+.|-|+|+++++++.|++++||+.+.+-. .+
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 99999999999999999999999999999765210 00
Q ss_pred --EEEecCC--CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC-CCeEEEEEecCCcc
Q 011924 384 --AVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-TESLFIGVWDRTYG 457 (475)
Q Consensus 384 --~~~~~~~--~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd-g~~l~~~~~D~~~~ 457 (475)
+.+.+|. +--..+.|||||++|++|..+|.+.+||.++.+.+..+..|.+.+.++.|+|- ...+|+++|||.+.
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 1112332 33467899999999999999999999999999999999999999999999995 46788999999875
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=224.06 Aligned_cols=280 Identities=17% Similarity=0.161 Sum_probs=227.3
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
..-.+|...++.. +..+.| +.-.|+++.| +|.+|++|+.+|.|.||...+..... .+.
T Consensus 86 D~AflW~~~~ge~--~~eltg----------------HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~ 145 (399)
T KOG0296|consen 86 DLAFLWDISTGEF--AGELTG----------------HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD 145 (399)
T ss_pred ceEEEEEccCCcc--eeEecC----------------CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee
Confidence 5567898877762 222332 3346888888 99999999999999999998776553 222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEE---eccCCceEE------EEEEeeccc
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVN---VSSSYCIIL------LCRLLNFMT 298 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~---~s~~~~~l~------~~~v~d~~~ 298 (475)
..-..+.-+.| +|.+.. |++|+.||.+.+|.+..+...+.+. |..+++ |.|+|+.+. ++++||+++
T Consensus 146 -~e~~dieWl~W--Hp~a~i-llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 146 -QEVEDIEWLKW--HPRAHI-LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred -cccCceEEEEe--cccccE-EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 33344556777 898875 9999999999999998876666666 666666 889998884 789999999
Q ss_pred ceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--------cCCCCeEEEEEec---CCCEE
Q 011924 299 EKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--------GHLDFSFASAWHP---NGVTF 362 (475)
Q Consensus 299 ~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--------~h~~~v~~~~~sp---~g~~l 362 (475)
++++.... ...++.++..+..++.|+.++.+++....+|+.+.... .+...+.|+.+.| .-.++
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 98887666 56789999999999999999999999998998877666 3444555555555 56789
Q ss_pred EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
|+|+-||+|.|||+.. . .++..-.|..+|+.+.|-+ ..+|++++.+|.|+.||.++|.++..+.+|..+|.+++++|
T Consensus 302 A~G~vdG~i~iyD~a~-~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAA-S-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred hcccccceEEEEeccc-c-hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC
Confidence 9999999999999975 3 4455556788899999998 77999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+++++++++.|++..
T Consensus 379 ~~~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTAL 393 (399)
T ss_pred CCcEEEEecCCCeEE
Confidence 999999999997653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=228.58 Aligned_cols=270 Identities=21% Similarity=0.319 Sum_probs=225.6
Q ss_pred ceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+.|.+....+++.. ++.+.+|+..+++....+. .+...+..+.+ ++++|++++.+|.
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK------------------GHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe------------------cCCcceeEEEECCCCCEEEEEcCCCe
Confidence 4455666666666655 7899999987665322211 12234667777 6679999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|++|++...... .....|...+.++.| ++++. ++++++.++.|++|++.+++....+. +...+.
T Consensus 75 i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~--------- 139 (289)
T cd00200 75 IRLWDLETGECV---RTLTGHTSYVSSVAF--SPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN--------- 139 (289)
T ss_pred EEEEEcCcccce---EEEeccCCcEEEEEE--cCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEE---------
Confidence 999999865433 334467778999999 88866 47777779999999999888877776 667788
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
+++|+|++.++++++.++.+++||+++++.+..+..|...+.+++|+|+++.+++++.++
T Consensus 140 --------------------~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 140 --------------------SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred --------------------EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence 999999999998888899999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
.|++||++. .+.+..+..+...+.+++|+|++.++++++.++.|++|++.++.....+..|...|.+++|+|++++|++
T Consensus 200 ~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 200 TIKLWDLST-GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred cEEEEECCC-CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999999976 6778888788889999999999999999888999999999998888888888899999999999999999
Q ss_pred EEecCCcc
Q 011924 450 GVWDRTYG 457 (475)
Q Consensus 450 ~~~D~~~~ 457 (475)
++.|+.+.
T Consensus 279 ~~~d~~i~ 286 (289)
T cd00200 279 GSADGTIR 286 (289)
T ss_pred ecCCCeEE
Confidence 99998653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=219.52 Aligned_cols=233 Identities=19% Similarity=0.228 Sum_probs=201.7
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+..++| ..+.+++++.||.+++||+..+... +..+.+|...|.++.| ++..+..++++|.|++|++|+....
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P--i~~~kEH~~EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP--IHKFKEHKREVYSVDW--NTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcc--hhHHHhhhhheEEecc--ccccceeEEeeccCCceEeecCCCC
Confidence 5778888 5678899999999999997654443 5778899999999999 8887778999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
+.+.+|. +...|. ..+|+| .++++++++.|+.+++||++.......+..
T Consensus 138 ~Sv~Tf~gh~~~Iy-----------------------------~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a 188 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIY-----------------------------QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA 188 (311)
T ss_pred cceEeecCCccEEE-----------------------------EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe
Confidence 9999988 666666 899999 889999999999999999985444445889
Q ss_pred CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCe
Q 011924 346 HLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 346 h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~ 423 (475)
|...+.|+.|+. +.+.++||+.|+.||+||+|+...++..+.+|.-+|+.++|||.. ..||+++.|-+++|||...+.
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999999998 889999999999999999999999999999999999999999965 689999999999999987443
Q ss_pred -eEEEEeccCCCeEEEEEcC-CCCeEEEEEecCCc
Q 011924 424 -EKEQEIDFFGEISGISFSP-DTESLFIGVWDRTY 456 (475)
Q Consensus 424 -~~~~~~~~~~~i~~l~fsp-dg~~l~~~~~D~~~ 456 (475)
.+.+...|..-+.++.||+ ++.++|+++||..+
T Consensus 269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred hhhhhhhccceEEeccccccccCceeeecccccce
Confidence 4444555667789999998 67899999999765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=249.55 Aligned_cols=235 Identities=22% Similarity=0.314 Sum_probs=206.7
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-C
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-G 265 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~ 265 (475)
...|+++.| +|+.|++++.++.+++|+...... .......+|...|+.++| +|+++. +++++.|++|++||+ .
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~f--s~d~~~-l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAF--SPDGSY-LLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEE--CCCCcE-EEEecCCceEEEeeccC
Confidence 346778887 999999999999999999955441 122444789999999999 999995 999999999999999 5
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.+..++.+. |...|. +++|+|+|+++++|+.|++|+|||+++++++..+.
T Consensus 235 ~~~~~~~l~gH~~~v~-----------------------------~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVT-----------------------------SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred CCeEEEEecCCCCceE-----------------------------EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence 568888887 889999 99999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCc--eEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGA--IRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~--v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+|.+.|.+++|++++++|++++.|+.|+|||+.+ +. ++..+..+..+ +++++|+|+|++|+++..|+.+++||+.
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999999999999999999999987 55 46677766554 9999999999999999999999999999
Q ss_pred CCeeEEEEeccCCC---eEEEEEcCCCCeEEEEEecCCcc
Q 011924 421 SGYEKEQEIDFFGE---ISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 421 ~~~~~~~~~~~~~~---i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+..+..+..|... +.+..+++.+.++++|+.|+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 99999999988764 44556688999999999997763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=230.07 Aligned_cols=322 Identities=15% Similarity=0.196 Sum_probs=250.9
Q ss_pred cccceeeeccc-ceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c
Q 011924 123 SVKSTILHFQL-RNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K 198 (475)
Q Consensus 123 ~~~~~~~h~~l-r~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~ 198 (475)
..+....||+- ..+-|+.+...+.. .-|-.+++|.....+......+.|| ...|.+.-| +
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gH----------------kd~VvacfF~~~ 200 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGH----------------KDYVVACFFGAN 200 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCC----------------CcceEEEEeccC
Confidence 44556677765 44448877777666 4567788888665544333333332 224444444 7
Q ss_pred CcEEEEEecCceEEEEeCCCC------------------------C---c-eEE---EeeecCCCCceeEEEEEeCCCCC
Q 011924 199 DKLLVAGGFQGELICKHLDRP------------------------G---V-SFC---SRTTYDDNAITNAVEIYGSPSGA 247 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~------------------------~---~-~~~---~~~~~~~~~~v~~l~~~~s~~g~ 247 (475)
...|++-+.||.+.+|..+.. + . .+. ...+......|++.++ ++.-+
T Consensus 201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f--H~~t~ 278 (893)
T KOG0291|consen 201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF--HKGTN 278 (893)
T ss_pred cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec--cCCce
Confidence 788999999999999987611 1 0 000 0112223366788877 77655
Q ss_pred eEEEEEeCCCeEEEEECCCCeeeeeee-c---cccEEeccCCceEE-------EEEEeecccceEEEE----eeeeeeEE
Q 011924 248 VHFTASNNDCGVRDFDMGKYQLSKHFR-F---PWPVNVSSSYCIIL-------LCRLLNFMTEKVIIC----LLCLQHSS 312 (475)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~-~---~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~----~~~i~~~~ 312 (475)
+|++|-..|...+|.+....+++.+. . ...+.|+..|..++ -+-||+..+..-+-. ...+.+++
T Consensus 279 -~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 279 -LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred -EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 59999999999999999999988776 2 23344666666664 578999888765533 34788999
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-C
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-G 391 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~ 391 (475)
+||||.++|+|+.||.|+|||.++|-+..++..|+..|+.+.|+..|+.++++|-||+||.||+.. .+..+++.... -
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~ 436 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPI 436 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999976 77788887643 3
Q ss_pred ceEEEEEccCCCEEEEEcCCC-eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 392 AIRSIRYTSDGRYMATAEPAD-FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
...+++..|.|..+++|+.|. .|.||++++|+.+-.+.+|.|+|.+++|+|+|..|++|+||.+++.+--|.+
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 566899999999999998886 5999999999999999999999999999999999999999999986666654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=242.28 Aligned_cols=274 Identities=19% Similarity=0.181 Sum_probs=234.6
Q ss_pred ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 132 QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
..|.+.++.+...++...++++++|+..+.+....+.. ..+.+..| .++++++|...|
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--------------------~y~l~~~Fvpgd~~Iv~G~k~G 434 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--------------------GYILASKFVPGDRYIVLGTKNG 434 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--------------------ccEEEEEecCCCceEEEeccCC
Confidence 35677777777767777789999999887776554321 24566666 788999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-----Cee--------eeeeecc
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQL--------SKHFRFP 276 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-----~~~--------~~~~~~~ 276 (475)
.+.++++...... .+...|.+.++.++. +|+++. +++||.|.+|++||..- +.. .+++..+
T Consensus 435 el~vfdlaS~~l~---Eti~AHdgaIWsi~~--~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 435 ELQVFDLASASLV---ETIRAHDGAIWSISL--SPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE 508 (888)
T ss_pred ceEEEEeehhhhh---hhhhccccceeeeee--cCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence 9999999865544 555689999999999 999997 99999999999998732 111 0222234
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
..+. |+++||||++||++--|.+++||-+.+-+...+|.||.-||.|+..+
T Consensus 509 ddvL-----------------------------~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 509 DDVL-----------------------------CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred ccEE-----------------------------EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 4444 99999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
||+++++|||.|++|+||-+.- +.|.+.+-+|..+|.++.|-|...++.+++.|+.|+-||-.+-..+..+.+|..+|+
T Consensus 560 ~DSklivTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~ 638 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW 638 (888)
T ss_pred CCcCeEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheee
Confidence 9999999999999999999965 899999999999999999999999999999999999999998889999999999999
Q ss_pred EEEEcCCCCeEEEEEecCCcceEEE
Q 011924 437 GISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
+++.+|+|.++++++.|.+++-+-+
T Consensus 639 cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 639 CLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeEEcCCCCeEEeccCCceeEeeec
Confidence 9999999999999999998864443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=233.26 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=213.5
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEE------ee-----ecCCCCceeEEEEEeCCCCCeEEEEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCS------RT-----TYDDNAITNAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~------~~-----~~~~~~~v~~l~~~~s~~g~~~l~s~ 253 (475)
+.++|.+-+| ...+|++|+.+-..++|++......... .+ ....+..|++++| +.+|.. |++|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~-LatG 253 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTL-LATG 253 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCe-EEEe
Confidence 4567888888 4568999999999999998741111000 00 1123356999999 999985 9999
Q ss_pred eCCCeEEEEECCCCeeeeeee-ccccEE---eccCCceEE------EEEEeecccceEEEEeeee----eeEEECCCCcE
Q 011924 254 NNDCGVRDFDMGKYQLSKHFR-FPWPVN---VSSSYCIIL------LCRLLNFMTEKVIICLLCL----QHSSQSPDGKL 319 (475)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~---~s~~~~~l~------~~~v~d~~~~~~~~~~~~i----~~~~~sp~g~~ 319 (475)
+.||.+|+|+.. +.++.++. |.+||. +...|..|. ++.+||..++...+..... -.+.|- +...
T Consensus 254 ~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDE 331 (524)
T ss_pred ecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCce
Confidence 999999999985 45555555 666655 556665553 6789999888776654411 134443 3446
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 320 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 320 l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
|++++.|+.|+|+.+....++.++.||.+.|.++.|.|.|.+|+++|.|+|++||.+.. ..+.+.+.+|...|..+.|+
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeec
Confidence 88888999999999988889999999999999999999999999999999999999866 77889999999999999999
Q ss_pred cCCC---------EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 400 SDGR---------YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 400 pdg~---------~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|.|. .|++++.|++|++||+..|.++..+..|..+|.+++|||+|++||+|+.|+.+
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 9763 78999999999999999999999999999999999999999999999888765
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=211.96 Aligned_cols=262 Identities=16% Similarity=0.204 Sum_probs=223.4
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|.+++| +|..|++|++++++.+|+++...... .....+|.+.|-.++| +|...-+|++++.|.+|++||++.+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w--~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCW--DPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhhee--CCCCCcceEEecCCceEEEEEeccC
Confidence 47889999 99999999999999999998764321 2445678888899999 7777667999999999999999999
Q ss_pred eeeeeee---ccccEEeccCCceEE------EEEEeecccceEEEEe---eeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 268 QLSKHFR---FPWPVNVSSSYCIIL------LCRLLNFMTEKVIICL---LCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 268 ~~~~~~~---~~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~---~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
++..... ..-.+.++|++..++ .+...|..+-+..... ..+..++|+-++.+++.....|.|.|....
T Consensus 98 k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 98 KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 9887776 233456889988875 3566666665554332 255678899888888887788999999999
Q ss_pred CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 336 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
.-+++..++.|.....|+.|+|+|++||+|+.|..|.+||+.. --+++.+.-+.-+|+.+.||.||++||+|+.|..|-
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 9999999999999999999999999999999999999999976 568888998999999999999999999999999999
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|=++++|..+..+. +.++...++|+|....||-++.|..-
T Consensus 257 IA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 257 IAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred eEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence 99999998887765 78999999999999999999887654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=244.63 Aligned_cols=266 Identities=20% Similarity=0.258 Sum_probs=222.7
Q ss_pred EEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 137 VWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 137 ~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
-++.....+... .+..++.|...+.+......+. -+...|.+++| ++.++++|+.|++|++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~----------------~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS----------------GHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhcccc----------------ccccceeeeEECCCCcEEEEecCCceEEE
Confidence 355555555443 6678888887544421111111 13347889999 8899999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~ 292 (475)
|++.... .+.+++.+|...|++++| +|.|+ ++++|+.|++|++||++++++++.+. |..+|+
T Consensus 230 wd~~~~~--~~~~~l~gH~~~v~~~~f--~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is------------ 292 (456)
T KOG0266|consen 230 WDLKDDG--RNLKTLKGHSTYVTSVAF--SPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS------------ 292 (456)
T ss_pred eeccCCC--eEEEEecCCCCceEEEEe--cCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceE------------
Confidence 9994332 335778899999999999 99995 69999999999999999999999998 888999
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc--eEEEeecCCCC--eEEEEEecCCCEEEEEeCC
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDF--SFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~--v~~~~~sp~g~~l~t~s~d 368 (475)
+++|+++|.+|++++.|+.|++||+.++. ++..+.++... +++++|+|++.++++++.|
T Consensus 293 -----------------~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 293 -----------------GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred -----------------EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 99999999999999999999999999998 56777776655 9999999999999999999
Q ss_pred CeEEEEECCCCCceEEEEecCCCc---eEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc-CCCeEEEEEcCCC
Q 011924 369 KTCRIWDLRNLSESVAVLKGNLGA---IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDT 444 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~---v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~fspdg 444 (475)
+++++||++. ...+..+.+|... +.+...++.|+++++|+.|+.|.+||+.++..+..+.+| ...+..+.++|..
T Consensus 356 ~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE 434 (456)
T ss_pred CeEEEEEccC-CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc
Confidence 9999999987 7788888887764 334455789999999999999999999999889999999 8999999999999
Q ss_pred CeEEEEEec
Q 011924 445 ESLFIGVWD 453 (475)
Q Consensus 445 ~~l~~~~~D 453 (475)
+++++++++
T Consensus 435 ~~~~s~s~~ 443 (456)
T KOG0266|consen 435 NLIASSSFE 443 (456)
T ss_pred CeeeecCcC
Confidence 999999853
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=255.47 Aligned_cols=276 Identities=12% Similarity=0.126 Sum_probs=216.5
Q ss_pred eEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceE
Q 011924 136 LVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGEL 211 (475)
Q Consensus 136 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i 211 (475)
+.|.++...+++. .++.|.+|+..+..... .... .+ .........|.+++| .+.+|++|+.||.|
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~~~~-----~~--~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDG----RDIH-----YP--VVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccc----cccc-----cc--eEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3466777766664 46899999864311000 0000 00 011112346888888 47899999999999
Q ss_pred EEEeCCCCCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEE
Q 011924 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILL 290 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~ 290 (475)
++||+...... ..+.+|.+.|++++| +| ++. +|++|+.|++|++||+.++..+..+.....+.
T Consensus 558 ~lWd~~~~~~~---~~~~~H~~~V~~l~~--~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~---------- 621 (793)
T PLN00181 558 QVWDVARSQLV---TEMKEHEKRVWSIDY--SSADPT-LLASGSDDGSVKLWSINQGVSIGTIKTKANIC---------- 621 (793)
T ss_pred EEEECCCCeEE---EEecCCCCCEEEEEE--cCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEecCCCeE----------
Confidence 99999865433 556789999999999 87 555 59999999999999999988888777666777
Q ss_pred EEEeecccceEEEEeeeeeeEEEC-CCCcEEEEEeCCCcEEEEECCCCc-eEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQS-PDGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
++.|+ ++|.+|++|+.|+.|++||+++++ ++..+.+|...|.+++|. ++.+|++++.|
T Consensus 622 -------------------~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 622 -------------------CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred -------------------EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 88995 589999999999999999998766 577888999999999997 67899999999
Q ss_pred CeEEEEECCCC-----CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-------------ec
Q 011924 369 KTCRIWDLRNL-----SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-------------ID 430 (475)
Q Consensus 369 g~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-------------~~ 430 (475)
++|+|||++.. ..++..+.+|...+..++|+|++++||+|+.|+.|+||+......+..+ ..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 99999999742 3578889999999999999999999999999999999998665433221 12
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+...|.+++|+|++..|++|+.||++..
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 3456999999999999999999998853
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=218.91 Aligned_cols=282 Identities=20% Similarity=0.261 Sum_probs=235.5
Q ss_pred ccceeeecccceeEEecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cC
Q 011924 124 VKSTILHFQLRNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 199 (475)
Q Consensus 124 ~~~~~~h~~lr~l~~~~~~~~v~~--~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~ 199 (475)
.+..-.|.....++.....+..|. ..|..+.+|+..+++.... +.||+ ..|..+++ ..
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi----------------~~vr~vavS~rH 205 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHI----------------ETVRGVAVSKRH 205 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--ecchh----------------heeeeeeecccC
Confidence 334445666555554444455555 3568999999998866443 44443 35667777 67
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP 278 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (475)
.+|++++.|++|++||+..++.. +..++|-+.|.++++ +|.-.. |++|+.|.++|+||+++...+..+. |..+
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvI---R~YhGHlS~V~~L~l--hPTldv-l~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVI---RHYHGHLSGVYCLDL--HPTLDV-LVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhH---HHhccccceeEEEec--ccccee-EEecCCcceEEEeeecccceEEEecCCCCc
Confidence 79999999999999999987766 678899999999999 888875 9999999999999999999999888 9999
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN 358 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~ 358 (475)
|. .+.+.|-...+++|+.|++|++||++.|+...++..|...+++++.+|.
T Consensus 280 V~-----------------------------~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 280 VA-----------------------------SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred ce-----------------------------eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 99 9999998889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec--------
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-------- 430 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-------- 430 (475)
...||+++.|. |+-|++.. +..+..+.+|...|.+++...|| ++++|+.+|.+.+||.++|...+....
T Consensus 331 e~~fASas~dn-ik~w~~p~-g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~ 407 (460)
T KOG0285|consen 331 ENLFASASPDN-IKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE 407 (460)
T ss_pred hhhhhccCCcc-ceeccCCc-cchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence 99999999885 99999977 77777799999999999998887 788999999999999999866544421
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
....|.+.+|...|..|++|..|.++.-+-+
T Consensus 408 sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 408 SEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cccceeEEeecccCceEEeccCCcceEEEec
Confidence 2356889999999999999999998865544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=234.13 Aligned_cols=256 Identities=13% Similarity=0.158 Sum_probs=223.5
Q ss_pred EecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEE
Q 011924 147 LMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFC 224 (475)
Q Consensus 147 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~ 224 (475)
..-++.|.+|+..+......+.+. ..||.+-.| ..+++++|+.|+.|+|++.++....
T Consensus 31 ~LynG~V~IWnyetqtmVksfeV~------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-- 90 (794)
T KOG0276|consen 31 ALYNGDVQIWNYETQTMVKSFEVS------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-- 90 (794)
T ss_pred eeecCeeEEEecccceeeeeeeec------------------ccchhhheeeeccceEEEecCCceEEEEecccceee--
Confidence 345688999999888776665543 235666666 7789999999999999999886655
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEE
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
..+..|..-|.+|+. +|...+ ++++|.|-+|++||.+. ..+.++|. |..-|.
T Consensus 91 -~~FeAH~DyIR~iav--HPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM---------------------- 144 (794)
T KOG0276|consen 91 -KTFEAHSDYIRSIAV--HPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM---------------------- 144 (794)
T ss_pred -EEeeccccceeeeee--cCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEE----------------------
Confidence 778899999999999 999886 99999999999999976 46677777 888888
Q ss_pred EEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCC
Q 011924 303 ICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 303 ~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~ 379 (475)
+++|+| |.+.+|+++-|++|++|.+.+..+..+|+||...|.|+++-| |..+|+||+.|.+|+|||..+
T Consensus 145 -------qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt- 216 (794)
T KOG0276|consen 145 -------QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT- 216 (794)
T ss_pred -------EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-
Confidence 999999 889999999999999999999999999999999999999988 557999999999999999987
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..|+.++.+|...|..+.|+|.-.++++|+.||+|+||+..+-+....+.-..+++++++-.+.++.+++|...|.+
T Consensus 217 k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 217 KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 89999999999999999999999999999999999999988766555555556789999999998899988766654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=218.91 Aligned_cols=263 Identities=21% Similarity=0.221 Sum_probs=207.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
-|.|+.+ +|.++++.|.||++.+||-.+.+......-...|.+.|.+|+| +|+++. ++++|.|.+++|||+.+.+
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW--sPDs~~-~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW--SPDSTQ-FLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE--CCCCce-EEEecCCceEEEEEeeccc
Confidence 6888888 9999999999999999998777655433435589999999999 999997 9999999999999999999
Q ss_pred eeeeeeccccEE------eccCCceE-----EEEEEeecccceEEEE----eeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 269 LSKHFRFPWPVN------VSSSYCII-----LLCRLLNFMTEKVIIC----LLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 269 ~~~~~~~~~~v~------~s~~~~~l-----~~~~v~d~~~~~~~~~----~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
+++++.....+. +-+.+.++ +.+..++...+..... ...|++++.+|++++|++|+.||.|.-|+
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 999887443322 11122222 2566666666554433 44899999999999999999999999999
Q ss_pred CCCCce-----------EEEeecCC-------------------------------------------------------
Q 011924 334 SMTGKT-----------IASLCGHL------------------------------------------------------- 347 (475)
Q Consensus 334 ~~~~~~-----------~~~l~~h~------------------------------------------------------- 347 (475)
+.+|.. +..+..+.
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 875521 11110000
Q ss_pred ---------------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 348 ---------------DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 348 ---------------~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
-...+++++|+++.+|.|++|+.|+||.+.... .....+..|.++|+.++|||||.|||++...
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 013478999999999999999999999996522 3444567799999999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 412 DFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.|.+||+.+.+.....-. |.+.|.+++|||+..++|+|+-|..+
T Consensus 509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred CcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 9999999998876433333 88999999999999999999999765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=221.59 Aligned_cols=234 Identities=15% Similarity=0.258 Sum_probs=207.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+..+|+.+-+ .--++++++.+++|++||..+.... ..+.+|...+..|.| +..|+. +++++.|-.+++||..
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e---~~LrGHt~sv~di~~--~a~Gk~-l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE---RSLRGHTDSVFDISF--DASGKY-LATCSSDLSAKLWDFD 180 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhh---hhhhccccceeEEEE--ecCccE-EEecCCccchhheeHH
Confidence 3456777777 4456777889999999999887653 677889989999999 888875 9999999999999997
Q ss_pred C-Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 266 K-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 266 ~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
+ .++++... +...|. ++.|-|.|.++++++.|.+|+.|++.+|-++.++
T Consensus 181 ~~~~c~ks~~gh~h~vS-----------------------------~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVS-----------------------------SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred HHHHHHHHhcCccccee-----------------------------eEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 7 44444443 777788 9999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC---------------CCEEEEE
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD---------------GRYMATA 408 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd---------------g~~la~~ 408 (475)
.+|...|..++.+.||.++|+++.|.+|++|-+.+ .++...+..|.-+|-+++|.|. |.+++++
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 99999999999999999999999999999999977 7788889999999999998762 2589999
Q ss_pred cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.|++|++||+.+|.++.++.+|...|.+++|+|.|+||+++..|++++
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 9999999999999999999999999999999999999999998888874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=223.28 Aligned_cols=273 Identities=19% Similarity=0.265 Sum_probs=222.7
Q ss_pred ecccceeEEec-CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 130 HFQLRNLVWAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 130 h~~lr~l~~~~-~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
|-....+.|++ .++++..++.-.+.+++..+......+.- | .-.|++++| +|++|++|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr-----------------F-k~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR-----------------F-KDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh-----------------h-ccceeEEEeecCCeEEEccC
Confidence 33444555554 34677778888888998877655442211 1 125888888 899999999
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCC
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSY 285 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~ 285 (475)
..|.|+++|..+ ... .+.+..|..++..+.| +|.++.+|++|+.|+.+++||+.+......+. |...|+
T Consensus 88 ~sG~V~vfD~k~-r~i--LR~~~ah~apv~~~~f--~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR----- 157 (487)
T KOG0310|consen 88 ESGHVKVFDMKS-RVI--LRQLYAHQAPVHVTKF--SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR----- 157 (487)
T ss_pred CcCcEEEecccc-HHH--HHHHhhccCceeEEEe--cccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-----
Confidence 999999999443 323 3677899999999999 99999999999999999999999887654555 888899
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
|.+|+| ++.++++|+.||.|++||+++. ..+.++. |..+|..+.+-|.|.++|
T Consensus 158 ------------------------~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 158 ------------------------CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIA 212 (487)
T ss_pred ------------------------eeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEE
Confidence 999999 5668999999999999999976 5666665 899999999999999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
+++.. .|+|||+-.+++.+.....|...|+|+++..++..|++|+-|+.|++||+.+.+.+. -....++|.+++.+|+
T Consensus 213 sAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~-s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 213 SAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH-SWKYPGPVLSIAVSPD 290 (487)
T ss_pred EcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE-eeecccceeeEEecCC
Confidence 99764 799999987677777777799999999999999999999999999999976654443 3457899999999999
Q ss_pred CCeEEEEEecCCcc
Q 011924 444 TESLFIGVWDRTYG 457 (475)
Q Consensus 444 g~~l~~~~~D~~~~ 457 (475)
++.+++|..||.+-
T Consensus 291 d~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVS 304 (487)
T ss_pred CceEEEecccceee
Confidence 99999999997653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-30 Score=229.43 Aligned_cols=223 Identities=15% Similarity=0.203 Sum_probs=198.6
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..|+|+.++...+|+|..|.+|++||... .+|...+.+|.+.|-|+.+ +.+ ++++||.|.+|++||++++++
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqy----d~r-viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQY----DER-VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CceEEEEecchhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeec----cce-EEEecCCCceEEEEeccCCch
Confidence 36999999999999999999999999775 5556888999999999998 344 699999999999999999999
Q ss_pred eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc---eEEEeec
Q 011924 270 SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCG 345 (475)
Q Consensus 270 ~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~l~~ 345 (475)
+.++- |-..|. .+.|+ ..++++++.|.++.+||+.+.. +.+.+.|
T Consensus 270 l~tlihHceaVL-----------------------------hlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG 318 (499)
T KOG0281|consen 270 LNTLIHHCEAVL-----------------------------HLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG 318 (499)
T ss_pred hhHHhhhcceeE-----------------------------EEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh
Confidence 88766 677777 88886 4589999999999999998664 3456789
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|...|..+.| +.+++++++.|.||++|++.+ ...++++.+|.-.|.|+.+ .|+++++|+.|.+|++||+..|.++
T Consensus 319 HrAaVNvVdf--d~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 319 HRAAVNVVDF--DDKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred hhhheeeecc--ccceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 9999999999 457999999999999999976 8999999999998888877 5899999999999999999999999
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+.+.+|..-|.++.| |.+.|++|..||+++.
T Consensus 394 RvLeGHEeLvRciRF--d~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV 424 (499)
T ss_pred HHHhchHHhhhheee--cCceeeeccccceEEE
Confidence 999999999999999 5679999999999863
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=231.34 Aligned_cols=271 Identities=17% Similarity=0.237 Sum_probs=229.3
Q ss_pred cccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecC
Q 011924 131 FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ 208 (475)
Q Consensus 131 ~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~d 208 (475)
|.+.-+-|+ +.+.|..+....|++|+..++....+.++. ...|+++.| +|.+|++|..+
T Consensus 178 fY~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecC------------------CCceEEEEECCCCCEEEEeecC
Confidence 334334466 677788888899999999999877765542 246999999 89999999999
Q ss_pred ceEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee-ee-ccccEEeccCC
Q 011924 209 GELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FR-FPWPVNVSSSY 285 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~s~~~ 285 (475)
|.|.+||....+.. ..... |.+.|.+++| + +. ++.+|+.++.|..+|++..+.... +. |...|.
T Consensus 239 g~v~iwD~~~~k~~---~~~~~~h~~rvg~laW--~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC----- 305 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKT---RTLRGSHASRVGSLAW--N--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVC----- 305 (484)
T ss_pred CeEEEEehhhcccc---ccccCCcCceeEEEec--c--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceee-----
Confidence 99999998876654 34444 9999999999 4 33 499999999999999987655443 44 788898
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFAT 364 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t 364 (475)
.++|+++++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ...+||+
T Consensus 306 ------------------------gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 306 ------------------------GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred ------------------------eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE
Confidence 999999999999999999999999988889999999999999999999 7789999
Q ss_pred Ee--CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE--cCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 365 GN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA--EPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 365 ~s--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
|+ .|++|++||..+ +..+..+.. .+.|.+|.|++..+.|+++ ..++.|.||+..+...+..+.+|..+|..+++
T Consensus 362 GGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~ 439 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNT-GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLAL 439 (484)
T ss_pred cCCCcccEEEEEEcCC-CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEE
Confidence 75 599999999976 777776664 4589999999999777664 45678999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCcceE
Q 011924 441 SPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~l 459 (475)
||||..+++|+.|.+++-+
T Consensus 440 SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFW 458 (484)
T ss_pred CCCCCEEEEecccCcEEec
Confidence 9999999999999998633
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=219.38 Aligned_cols=232 Identities=25% Similarity=0.392 Sum_probs=202.8
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..+|+++++ ++++|++|+.+|.|++|++...... .....|...+..+.| +|+++. +++++.++.|++|++.+
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~~-l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAA--SADGTY-LASGSSDKTIRLWDLET 82 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---EEEecCCcceeEEEE--CCCCCE-EEEEcCCCeEEEEEcCc
Confidence 357999999 6799999999999999999866533 445567777888888 999875 88888999999999998
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
++....+. +...+. ++.|+|+++++++++.++.+.+||+++++....+..
T Consensus 83 ~~~~~~~~~~~~~i~-----------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 83 GECVRTLTGHTSYVS-----------------------------SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred ccceEEEeccCCcEE-----------------------------EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 77766666 555777 999999999898888899999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|...+.+++|+|++.++++++.++.|++||++. .+++..+..+...+.++.|+|+++.|++++.++.|++||+.++..+
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 999999999999999999998899999999976 6778888888889999999999999999999999999999988888
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+..|.+.+.++.|+|++.++++++.|+.+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 8777888899999999998888887767765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=206.93 Aligned_cols=235 Identities=17% Similarity=0.162 Sum_probs=207.0
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+.-+++-+.+ +|.+|.+++.|....||--.+++.. -+..+|.+.|+++++ ..+.+. +++|+.|.++++||++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---Gty~GHtGavW~~Di--d~~s~~-liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---GTYDGHTGAVWCCDI--DWDSKH-LITGSADQTAKLWDVE 82 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCcee---eeecCCCceEEEEEe--cCCcce-eeeccccceeEEEEcC
Confidence 4447888888 8999999999999999987555544 677899999999999 777665 9999999999999999
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-----CCcEEEEECC-----
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-----NPDGLLVDSM----- 335 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-----dg~i~iwd~~----- 335 (475)
+|+++..+..+.+|. .+.|+++|++++++.+ .+.|.++|++
T Consensus 83 tGk~la~~k~~~~Vk-----------------------------~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVK-----------------------------RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred CCcEEEEeecCCeeE-----------------------------EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 999999999999999 9999999999888754 4779999998
Q ss_pred --CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 336 --TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 336 --~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
...+...+..+...+..+-|.|-+.+|++|..||.|.+||+++..+.+.....|...|+.++++|+..++++++.|.+
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc
Confidence 445678888888999999999999999999999999999999866778888889999999999999999999999999
Q ss_pred EEEEECCCCee-------------------------------------------------------EEEEeccCCCeEEE
Q 011924 414 VHVYDVKSGYE-------------------------------------------------------KEQEIDFFGEISGI 438 (475)
Q Consensus 414 i~iwd~~~~~~-------------------------------------------------------~~~~~~~~~~i~~l 438 (475)
-++||+.+-.. +..+.+|+|+|+++
T Consensus 214 akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv 293 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV 293 (327)
T ss_pred ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCccee
Confidence 99999875432 22344688999999
Q ss_pred EEcCCCCeEEEEEecCCcc
Q 011924 439 SFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~ 457 (475)
+|+|+|+..++|+.||.++
T Consensus 294 AfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 294 AFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred EECCCCcccccCCCCceEE
Confidence 9999999999999999885
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=251.87 Aligned_cols=237 Identities=13% Similarity=0.132 Sum_probs=198.2
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
...|.+++| ++++|++|+.||.|++|++.... ..........+...+.+++| ++....+|++++.||+|++|
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW--NSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEe--ccCCCCEEEEEeCCCeEEEE
Confidence 457999999 88999999999999999975311 00000111223457888888 76544459999999999999
Q ss_pred ECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceE
Q 011924 263 DMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 263 d~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
|+.+++.+..+. |...|. +++|+| ++.+|++|+.|+.|++||++++..+
T Consensus 561 d~~~~~~~~~~~~H~~~V~-----------------------------~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVW-----------------------------SIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred ECCCCeEEEEecCCCCCEE-----------------------------EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 999988888776 788898 999997 7899999999999999999999998
Q ss_pred EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 341 ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+..+ ..+.+++|++ +|.+|++|+.|++|++||+++...++..+.+|...|.+++|. ++.+|++++.|+.|+|||+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 888854 6799999965 799999999999999999987555677888999999999997 6889999999999999999
Q ss_pred CCC------eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 420 KSG------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 420 ~~~------~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
..+ ..+..+.+|...+..++|+|++.+|++|+.|+++..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i 734 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence 743 456778889999999999999999999999987643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=229.19 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=184.0
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCc----eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
+...|.+++| ++++|++|+.||+|++|++...+. ......+.+|...|.+++| +|++..+|++++.|++|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f--~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF--HPSAMNVLASAGADMVVN 151 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe--CcCCCCEEEEEeCCCEEE
Confidence 3458999999 568999999999999999976432 1123456789999999999 998755699999999999
Q ss_pred EEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 261 DFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 261 iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
+||+.+++.+..+. |...|. +++|+|+|.+|++++.|+.|++||+++++.
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~-----------------------------sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQIT-----------------------------SLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEECCCCeEEEEEcCCCCceE-----------------------------EEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 99999998887776 777888 999999999999999999999999999999
Q ss_pred EEEeecCCCC-eEEEEEecCCCEEEEEe----CCCeEEEEECCCCCceEEEEecCC-CceEEEEEccCCCEEEEEc-CCC
Q 011924 340 IASLCGHLDF-SFASAWHPNGVTFATGN----QDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAE-PAD 412 (475)
Q Consensus 340 ~~~l~~h~~~-v~~~~~sp~g~~l~t~s----~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~spdg~~la~~~-~dg 412 (475)
+..+.+|.+. +..+.|.|++..+++++ .|++|++||+++...++.....+. ..+..+.|+|++++|++++ .|+
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 9999999865 45678999887777654 478999999998666666554333 4566678999999999887 599
Q ss_pred eEEEEECCCCeeEEEEec-cCCCeEEEEEcCC
Q 011924 413 FVHVYDVKSGYEKEQEID-FFGEISGISFSPD 443 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspd 443 (475)
.|++||+.++........ +..++.+++|.|.
T Consensus 283 ~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 283 NIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999998876655432 3456788989884
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=214.59 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=191.9
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc
Q 011924 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 142 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
.+.+.|....+++.-+..+.....+. .++.++..|--.++.|-++++|...|+|+||+....+.
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iY----------------tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h 93 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIY----------------TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH 93 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeee----------------ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce
Confidence 35566666666666655444332221 11222223444444788888888888888888765332
Q ss_pred eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---CCCeEEEEE--CCCCeeee--------eeeccccEEeccCCceE
Q 011924 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---NDCGVRDFD--MGKYQLSK--------HFRFPWPVNVSSSYCII 288 (475)
Q Consensus 222 ~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---~dg~v~iwd--~~~~~~~~--------~~~~~~~v~~s~~~~~l 288 (475)
.. ...+.--.++|..|+| +.++++++++|- +-|.+.+|| -..|+... .|+..+|.+....+..
T Consensus 94 iL-Knef~v~aG~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD- 169 (603)
T KOG0318|consen 94 IL-KNEFQVLAGPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDD- 169 (603)
T ss_pred ee-eeeeeeccccccccee--CCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCC-
Confidence 21 2223334455555666 555555444431 112344443 11111111 1111222220000000
Q ss_pred EEEEEeeccc----ceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee---cCCCCeEEEEEecCCCE
Q 011924 289 LLCRLLNFMT----EKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNGVT 361 (475)
Q Consensus 289 ~~~~v~d~~~----~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~---~h~~~v~~~~~sp~g~~ 361 (475)
..+-++.... .....+...|+|+.|+|||.++++++.||++.+||-.+|..+..|. +|.+.|++++|+||+..
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 0111111000 0001112245599999999999999999999999999999999998 89999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCC---ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLG---AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~---~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
|+|++.|.+++|||+.. .++++++..... .--.+.|. ...|++.+.+|+|.+++...+..+.++.+|...|+++
T Consensus 250 ~~T~SaDkt~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred EEEecCCceEEEEEeec-cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 99999999999999976 788888765332 22355565 5589999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCcceE
Q 011924 439 SFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~l 459 (475)
..+|++.+|++|+.||.+-.+
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred EEcCCCCEEEeeccCceEEEE
Confidence 999999999999999876443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=198.72 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=198.7
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEE-eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
+|-.++| .|..|++||.|..|++|+........|. .+-.+|+..|..++| +|.|++ |+++|.|+++-||.-..
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw--sp~g~~-La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW--SPHGRY-LASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee--cCCCcE-EEEeeccceEEEeecCC
Confidence 6888888 2558999999999999999854444443 344579999999999 999995 99999999999997653
Q ss_pred --Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC---ceE
Q 011924 267 --YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTI 340 (475)
Q Consensus 267 --~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~ 340 (475)
++++..+. |...|. |++||++|++||++++|..+-||.+..+ .+.
T Consensus 93 ~efecv~~lEGHEnEVK-----------------------------~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVK-----------------------------CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred CceeEEeeeecccccee-----------------------------EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 56777777 888999 9999999999999999999999998744 467
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC--CCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR--NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
..|++|...|..+.|||...+|+++|.|.+|++|.-. ....++.++.+|...|.+++|+|.|..|++++.|++|+||-
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 8899999999999999999999999999999999875 22468999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 419 VKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
..+.- ...|.+++..+.|. .-.|++++.|+.+....+-
T Consensus 224 ~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 224 LYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred eccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 66431 12367889999998 4589999999887544433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=227.30 Aligned_cols=233 Identities=16% Similarity=0.248 Sum_probs=207.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
+|.++.+ ....++++-.+|.|.+|+.++.... +.+.-..-+|.+..| -+-.++ +++|+.|..||+|+..+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmV---ksfeV~~~PvRa~kf--iaRknW-iv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV---KSFEVSEVPVRAAKF--IARKNW-IVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceee---eeeeecccchhhhee--eeccce-EEEecCCceEEEEecccce
Confidence 5667766 6779999999999999998875544 333444556777777 455556 9999999999999999999
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEeecC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGH 346 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h 346 (475)
.+..|. |+.-++ |++.+|.-.+++++++|-.|++||-..+ .+.++++||
T Consensus 89 kV~~FeAH~DyIR-----------------------------~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 89 KVKTFEAHSDYIR-----------------------------SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred eeEEeecccccee-----------------------------eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 999999 999999 9999999999999999999999998754 578899999
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC--CEEEEEcCCCeEEEEECCCCe
Q 011924 347 LDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 347 ~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg--~~la~~~~dg~i~iwd~~~~~ 423 (475)
+..|++++|+| |.+.+|+++-|+||+||.+.. ..+..++.+|...|.++.|-|-| .+|++|+.|.+|+|||.++..
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 99999999999 889999999999999999976 78899999999999999998755 699999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
++.++.+|...|+.+.|+|.-..+++|+.||+++-+
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred HHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 999999999999999999999999999999998643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=219.32 Aligned_cols=245 Identities=16% Similarity=0.258 Sum_probs=202.7
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
.-++.|.+|+..+-....+ +.| +.+.|.|+.++.+.|++|+.|.+|++||+.+.+.. .+
T Consensus 214 lrDnTikiWD~n~~~c~~~--L~G----------------HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l---~t 272 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKI--LTG----------------HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPL---NT 272 (499)
T ss_pred cccCceEEeccccHHHHHh--hhc----------------CCCcEEeeeccceEEEecCCCceEEEEeccCCchh---hH
Confidence 4568888998765444332 222 23479999999999999999999999999987765 67
Q ss_pred ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee---eeee-ccccEEeccCCceEEEEEEeecccceEEE
Q 011924 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 228 ~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
+.+|...|-.+.| + +| +++++|.|.++++||+.....+ +.+. |...|+
T Consensus 273 lihHceaVLhlrf--~-ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN----------------------- 324 (499)
T KOG0281|consen 273 LIHHCEAVLHLRF--S-NG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN----------------------- 324 (499)
T ss_pred HhhhcceeEEEEE--e-CC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-----------------------
Confidence 7889999999998 3 33 5999999999999999764422 2222 667788
Q ss_pred EeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceE
Q 011924 304 CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 383 (475)
Q Consensus 304 ~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~ 383 (475)
.+.|+ .+++++++.|.+|++|++.++..++++.+|...|.|+.+ .++++++|+.|.+|++||+.. +.++
T Consensus 325 ------vVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~-G~cL 393 (499)
T KOG0281|consen 325 ------VVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACL 393 (499)
T ss_pred ------eeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-cHHH
Confidence 66664 569999999999999999999999999999999998887 789999999999999999977 8999
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE---------EEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK---------EQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
+.+.+|..-|++++|. .+.+++|..||.|+|||+.++... .....|.|.|..+.| |...|++++.|.
T Consensus 394 RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999999999999995 568999999999999999876543 344458899999999 456888888887
Q ss_pred Cc
Q 011924 455 TY 456 (475)
Q Consensus 455 ~~ 456 (475)
++
T Consensus 470 tI 471 (499)
T KOG0281|consen 470 TI 471 (499)
T ss_pred eE
Confidence 65
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-25 Score=224.58 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=178.4
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCce-----EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS-----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
..+|.+++| ++++|++|+.||.|++|++...... .....+.+|...|.+++| +|++..++++++.|++|+
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf--~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW--NPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE--CCCCCeEEEEEeCCCeEE
Confidence 357999999 3689999999999999999754321 112345678899999999 999987778999999999
Q ss_pred EEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 261 DFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
+||+.+++....+.+...+. +++|+|+|.+|++++.|+.|+|||+++++.+
T Consensus 152 IWDl~tg~~~~~i~~~~~V~-----------------------------SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 152 IWDIENEKRAFQINMPKKLS-----------------------------SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEECCCCcEEEEEecCCcEE-----------------------------EEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 99999988777777777788 9999999999999999999999999999999
Q ss_pred EEeecCCCCeEE-----EEEecCCCEEEEEeCCC----eEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEc
Q 011924 341 ASLCGHLDFSFA-----SAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 341 ~~l~~h~~~v~~-----~~~sp~g~~l~t~s~dg----~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~ 409 (475)
..+.+|.+.+.+ ..|++++.+|++++.++ +|+|||+++...++..+..+ .+.+......++|.++++|+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 999999876543 33558889999988764 79999999767777665433 33343444456789999999
Q ss_pred CCCeEEEEECCCCeeEEEEe--ccCCCeEEEEEcCC
Q 011924 410 PADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPD 443 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~fspd 443 (475)
.|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 999999999987742 2222 24567899999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=199.40 Aligned_cols=229 Identities=15% Similarity=0.127 Sum_probs=201.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
.+.+|.++.+ +|++.+++|.|.+|++|+.... .+.++..+|...|..++. +.++.. |++|+.|..|.+||++
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~--s~Dnsk-f~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAAL--SSDNSK-FASCGGDKAVQVWDVN 89 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccc--cccccc-cccCCCCceEEEEEcc
Confidence 3457889888 9999999999999999997653 345888899989988888 778776 9999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC--CceEEE
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKTIAS 342 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~ 342 (475)
+|+..+.+. |...|+ .++|+.+...+++|+-|..+++||-++ .++++.
T Consensus 90 TGkv~Rr~rgH~aqVN-----------------------------tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVN-----------------------------TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cCeeeeecccccceee-----------------------------EEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 999999999 999999 999999999999999999999999874 568999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+....+.|.++.. .+..|++|+.||++|.||+|. +....-.-+| +|+++.|+++|+.++.++.|++|++.|-.+|
T Consensus 141 ldea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~-G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRK-GTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhhcCceeEEEe--cccEEEeeccCCcEEEEEeec-ceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchh
Confidence 9888899999988 567899999999999999998 6655544444 8999999999999999999999999999999
Q ss_pred eeEEEEeccCCC--eEEEEEcCCCCeEEEEEecCCc
Q 011924 423 YEKEQEIDFFGE--ISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 423 ~~~~~~~~~~~~--i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.+..+++|... =...+++.....+++|+.||.+
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceE
Confidence 999999998753 3566788888899999999865
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=225.13 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=177.7
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCC---------c-eEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeE
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPG---------V-SFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGV 259 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~---------~-~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v 259 (475)
.++..+|++..+++++.+.....|+..... . ......+.+|.+.|.+++| +| ++. +|++|+.|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f--sP~d~~-~LaSgS~DgtI 100 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF--NPFDPQ-KLFTASEDGTI 100 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE--cCCCCC-EEEEEeCCCEE
Confidence 344555555555655555555555533211 1 1011245689999999999 99 666 59999999999
Q ss_pred EEEECCCCe-------eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEE
Q 011924 260 RDFDMGKYQ-------LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGL 330 (475)
Q Consensus 260 ~iwd~~~~~-------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~ 330 (475)
++||+.++. .+..+. |...|. +++|+|++ ++|++++.|+.|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~-----------------------------~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVG-----------------------------IVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEE-----------------------------EEEeCcCCCCEEEEEeCCCEEE
Confidence 999997643 233344 666777 99999975 6999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCc-eEEEEEccCCCEEEEEc
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA-IRSIRYTSDGRYMATAE 409 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~spdg~~la~~~ 409 (475)
|||+++++.+..+.+|...|.+++|+|+|++|++++.|++|+|||+++ ++.+..+.+|.+. +..+.|.|++..|++++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence 999999999999999999999999999999999999999999999987 6778888888764 44678999887777654
Q ss_pred ----CCCeEEEEECCCCeeEEEEe--ccCCCeEEEEEcCCCCeEEEEEe-cCCc
Q 011924 410 ----PADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDTESLFIGVW-DRTY 456 (475)
Q Consensus 410 ----~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~fspdg~~l~~~~~-D~~~ 456 (475)
.|+.|++||+++........ .....+....|++++.+|++|+. |+++
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 47899999998765433332 23345667789999999999874 7765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=213.67 Aligned_cols=282 Identities=15% Similarity=0.113 Sum_probs=207.7
Q ss_pred ecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEe
Q 011924 139 ATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKH 215 (475)
Q Consensus 139 ~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~ 215 (475)
-+++-.++. .-++.|..|+...-.. . +.....+-|. ..++|.++.| .+..|++.+...+.+++|
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMda-s-~~~fr~l~P~-----------E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDA-S-MRSFRQLQPC-----------ETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred cCCCceeeeccccceEEEEecccccc-c-chhhhccCcc-----------cccccceeeecCCCCeEEEEecCcceeEEc
Confidence 344445555 3478999999643111 1 1111112222 2346777777 777777777778888888
Q ss_pred CCCCCceEEE---------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-eeeeeec--cccEEecc
Q 011924 216 LDRPGVSFCS---------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFRF--PWPVNVSS 283 (475)
Q Consensus 216 ~~~~~~~~~~---------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~--~~~v~~s~ 283 (475)
-+......|. ..+.+|...+++.+| +|..+..|++++.||++|+|++...+ ....+.+ .+.-..
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv-- 318 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV-- 318 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc--
Confidence 7654433332 345688889999999 99988889999999999999997643 2222321 111111
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc--e-EEEeecCCC--CeEEEEEecC
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--T-IASLCGHLD--FSFASAWHPN 358 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~-~~~l~~h~~--~v~~~~~sp~ 358 (475)
.++..+|+|+|+++|+|..||.|.+|+..... + ...-..|.. .|+|+.||++
T Consensus 319 -----------------------~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 319 -----------------------PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred -----------------------CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 11278999999999999999999999975322 2 223346776 8999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEecCC--CceEEEEEccCCCEEEEEcC------CCeEEEEECCCCeeEEEEec
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spdg~~la~~~~------dg~i~iwd~~~~~~~~~~~~ 430 (475)
|++|++-+.|+++++||+|+..+++.+..+-. -+-+.++|||+.++|++|+. .|.+.+||..+-..+..+.-
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 99999999999999999999889988877633 35678999999999999864 46899999888877777766
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
....|..+.|+|.=+.|++|+.||++..+.
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEEeecchhhheeeecCCCceEEEE
Confidence 677899999999999999999998876443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-26 Score=196.11 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=179.7
Q ss_pred EeeecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECCC---Ceeeeeee--ccccEEeccCCceEEEEEEeeccc
Q 011924 225 SRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGK---YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMT 298 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~~---~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~ 298 (475)
.....+|.+.+..++| +|. |. +|++|+.|+.||+|+... ..+...+. |...|+
T Consensus 7 ~~~~~gh~~r~W~~aw--hp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR------------------ 65 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAW--HPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR------------------ 65 (312)
T ss_pred EEeecCCCCcEEEEEe--ccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheee------------------
Confidence 4566788889999999 888 65 699999999999999974 33444443 777888
Q ss_pred ceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 299 EKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 299 ~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
+++|+|.|++|++++-|.++.||.-..+ +++.+|+||...|.|++|+++|++|||+++|+.|=||.+
T Consensus 66 -----------svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 66 -----------SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred -----------eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 9999999999999999999999986543 678999999999999999999999999999999999999
Q ss_pred CC--CCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC---CCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 377 RN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK---SGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 377 ~~--~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.. ...+...+++|..-|..+.|+|...+|++++.|++|++|.-. .-.+..++.+|.+.|.+++|+|.|..|++++
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 73 235889999999999999999998999999999999999865 2356788888999999999999999999999
Q ss_pred ecCCcceEEEE
Q 011924 452 WDRTYGSLLEY 462 (475)
Q Consensus 452 ~D~~~~~ll~~ 462 (475)
.|+++.....+
T Consensus 215 dD~tv~Iw~~~ 225 (312)
T KOG0645|consen 215 DDGTVSIWRLY 225 (312)
T ss_pred CCcceEeeeec
Confidence 99998755543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=205.67 Aligned_cols=295 Identities=14% Similarity=0.119 Sum_probs=215.9
Q ss_pred eeeecccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-----cCcE
Q 011924 127 TILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-----KDKL 201 (475)
Q Consensus 127 ~~~h~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-----~~~~ 201 (475)
.+.|-.....+-..+++.+...-++.+++|+........+ .|| ..+|.++++ ....
T Consensus 101 ~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~---~Gh----------------t~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTI---VGH----------------TGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred cccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEE---ecC----------------CcceeeeEEEecCCccce
Confidence 3456555566655556655556789999998643332332 222 235666666 2346
Q ss_pred EEEEecCceEEEEeCCCCCceE-EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--eeeeeecccc
Q 011924 202 LVAGGFQGELICKHLDRPGVSF-CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LSKHFRFPWP 278 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~ 278 (475)
+++++.|.++++|.++.+.... +.....+|...|.+|.. .++|.. +++||.|.+|.+|+.++.. ..........
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe--cCCCCe-EEeecccceeeecccCCCccccccccchhhh
Confidence 9999999999999988765332 22333489999999999 899986 9999999999999943210 0000000000
Q ss_pred EE--eccCCceEEEEEEeecccceEEE----EeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q 011924 279 VN--VSSSYCIILLCRLLNFMTEKVII----CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 279 v~--~s~~~~~l~~~~v~d~~~~~~~~----~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
-+ +-+ ...++.++. +..+|.++.|++ ...+.+++.|.+|+.||+.+++.+.++.+ ...+++
T Consensus 239 k~~~~~~-----------~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 239 KKQKREK-----------EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC 305 (423)
T ss_pred hhhhhhh-----------cccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence 00 000 000001111 111444999998 77889999999999999999999988885 456899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCe-eEEEE
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQE 428 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~-~~~~~ 428 (475)
+..+|..++||+|+.|..+++||.|+... ....+.+|.+.|.++.|+|.. ..|++++.|+++++||+++.+ ++..+
T Consensus 306 i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred eecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 99999999999999999999999997543 567788999999999999965 578899999999999999887 88999
Q ss_pred eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 429 IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 429 ~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+|...|.++.|+ ++..|++|+.|.++.
T Consensus 386 ~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 386 AGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ccCCceEEEEecc-CCceEEeccCcceEE
Confidence 9999999999998 457999999998764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=212.46 Aligned_cols=260 Identities=15% Similarity=0.236 Sum_probs=207.2
Q ss_pred eeEEEEEEcC---cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAVKD---KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~~~---~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
-.|.||+-+. ..+++|+.||.|++||+.. ..|..++..|.+.|..|++ .. . .+++++.|.+|+.|.+..
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---R~~~~~f~AH~G~V~Gi~v--~~--~-~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---RECIRTFKAHEGLVRGICV--TQ--T-SFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhh---hhhhheeecccCceeeEEe--cc--c-ceEEecCCcceeeeeccC
Confidence 3577777722 5689999999999999876 3345788899999999999 44 3 388888999999999865
Q ss_pred CeeeeeeeccccEE---eccCCceEE----EEEEeecccceEEEEee----eeeeEEECC-CCcEEEEEeCCCcEEEEEC
Q 011924 267 YQLSKHFRFPWPVN---VSSSYCIIL----LCRLLNFMTEKVIICLL----CLQHSSQSP-DGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 267 ~~~~~~~~~~~~v~---~s~~~~~l~----~~~v~d~~~~~~~~~~~----~i~~~~~sp-~g~~l~~~~~dg~i~iwd~ 334 (475)
...+++.....+. -+..+...+ .+.|||.....++.... .|.++.|+| ....|++++.|+.|.|||+
T Consensus 139 -~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 139 -PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred -CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 3444443222221 111111111 47899998888776655 788999999 5567777889999999999
Q ss_pred CCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 335 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 335 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
+++++++.+. -...-..++|+|.+-.|++|+.|..+..||+|+...++....+|.++|..+.|||.|+-+++||.|.+|
T Consensus 218 R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 218 RQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred ccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence 9999887765 344567899999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 415 HVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
+||.+..+...-.+.. -...|.++.||.|.+|+++|+.|++++-+
T Consensus 297 RIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred EEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence 9999987755443322 23579999999999999999999998643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=192.52 Aligned_cols=261 Identities=14% Similarity=0.167 Sum_probs=209.0
Q ss_pred eeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec--Cc
Q 011924 135 NLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF--QG 209 (475)
Q Consensus 135 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~--dg 209 (475)
.+-++.++..+... .+..+.+|+..+++....++.... .|..++| ..+.++.++. |.
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky------------------G~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY------------------GVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc------------------cccEEEEecCCceEEEccCCCCC
Confidence 34466666666664 456999999999988877664311 2334444 5566666655 88
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceE
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCII 288 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l 288 (475)
+|+..++..++.. +.+.+|...|+.|++ +|-+.. +++++.|++||+||++..++...+. ...++.
T Consensus 81 tIryLsl~dNkyl---RYF~GH~~~V~sL~~--sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~-------- 146 (311)
T KOG1446|consen 81 TIRYLSLHDNKYL---RYFPGHKKRVNSLSV--SPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA-------- 146 (311)
T ss_pred ceEEEEeecCceE---EEcCCCCceEEEEEe--cCCCCe-EEecccCCeEEeeEecCCCCceEEecCCCcce--------
Confidence 9999999887655 788999999999999 999986 9999999999999999887776666 344444
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEee---cCCCCeEEEEEecCCCEEE
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLC---GHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~---~h~~~v~~~~~sp~g~~l~ 363 (475)
+|+|+|-++|++.....|++||++.- .+-.++. +.......+.|+|||++|+
T Consensus 147 -----------------------AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 147 -----------------------AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred -----------------------eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 99999999999988889999999842 3444443 3456788999999999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCce---EEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEE
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAI---RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGIS 439 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v---~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~ 439 (475)
.+...+.+.+.|.-. +.....+..+...- -...|+|||+++++|+.||+|++|++++|..+....+ +.+++.++.
T Consensus 204 lsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred EEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 999999999999977 77777777655322 4788999999999999999999999999999999888 689999999
Q ss_pred EcCCCCeEEEEE
Q 011924 440 FSPDTESLFIGV 451 (475)
Q Consensus 440 fspdg~~l~~~~ 451 (475)
|+|.--.+++++
T Consensus 283 fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 283 FNPRYAMFVSAS 294 (311)
T ss_pred cCCceeeeeecC
Confidence 999866666554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=212.52 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=215.3
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
|-.....+.+ ..+..|.+|+...++...+-.++| ...+|+++.+ ++..+++.+.|+.+++|
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG----------------s~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG----------------SLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc----------------cCCCcceeeecCCCceEEeecCCCceeee
Confidence 5555555555 356789999987766332222222 2246889999 78899999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEe
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLL 294 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~ 294 (475)
+++..... .++.+|...|+++.| ...... +++|+.|.+|++||+....+.++.-....++
T Consensus 247 nvd~~r~~---~TLsGHtdkVt~ak~--~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cn-------------- 306 (459)
T KOG0288|consen 247 NVDSLRLR---HTLSGHTDKVTAAKF--KLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCN-------------- 306 (459)
T ss_pred eccchhhh---hhhcccccceeeehh--hccccc-eeeccccchhhhhhhhhhheecccccccccc--------------
Confidence 99876655 567789999999999 555444 9999999999999999988888776666666
Q ss_pred ecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 011924 295 NFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374 (475)
Q Consensus 295 d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iw 374 (475)
.+..+ ...+++|..|++|+.||++++.++.....+. .|.++..+++|..+.+++.|.++.+.
T Consensus 307 ---------------DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 307 ---------------DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred ---------------ceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence 66665 5678888899999999999999999988765 89999999999999999999999999
Q ss_pred ECCCCCceEEEEecCC----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC--CeEEEEEcCCCCeEE
Q 011924 375 DLRNLSESVAVLKGNL----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG--EISGISFSPDTESLF 448 (475)
Q Consensus 375 d~~~~~~~~~~~~~~~----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~fspdg~~l~ 448 (475)
|+++ ....+.+.+.. .-.+.+.|||++.|+|+|+.||.|+||++.++++...+..... .|.+++|+|.|..|+
T Consensus 369 DlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 369 DLRT-KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eccc-ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9987 66666665421 3478899999999999999999999999999998887776444 599999999999999
Q ss_pred EEEecCCcc
Q 011924 449 IGVWDRTYG 457 (475)
Q Consensus 449 ~~~~D~~~~ 457 (475)
+++.++.+.
T Consensus 448 sadk~~~v~ 456 (459)
T KOG0288|consen 448 SADKQKAVT 456 (459)
T ss_pred cccCCcceE
Confidence 998876553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=219.70 Aligned_cols=270 Identities=16% Similarity=0.183 Sum_probs=214.6
Q ss_pred cceeEEecCCC-eEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecC
Q 011924 133 LRNLVWATSKH-DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQ 208 (475)
Q Consensus 133 lr~l~~~~~~~-~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~d 208 (475)
+..++...+.+ .+....+.++.+++..+.+...- +.+ .+..|..|++ ..++|+.++..
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~-----------------ivG-~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQ-----------------IVG-YNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehh-----------------hcC-CchhheeeeecCCccceEEEEeCC
Confidence 34444444444 44446778888886544332211 111 2236889999 56999999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee----eeee-eccccEEecc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL----SKHF-RFPWPVNVSS 283 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~----~~~~-~~~~~v~~s~ 283 (475)
+.++++++.+. .| .+..+|...|.+++. ..+|. +|++||.|+++++|.++.+.. +... .|...|.
T Consensus 346 ~~lr~y~~~~~---~c-~ii~GH~e~vlSL~~--~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg--- 415 (775)
T KOG0319|consen 346 PELRLYTLPTS---YC-QIIPGHTEAVLSLDV--WSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG--- 415 (775)
T ss_pred CceEEEecCCC---ce-EEEeCchhheeeeee--cccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccc---
Confidence 99999976653 33 388899999999985 55664 699999999999998844332 2222 2666777
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCce-----EE----EeecCCCCeEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT-----IA----SLCGHLDFSFAS 353 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~-----~~----~l~~h~~~v~~~ 353 (475)
+++++. ....|++++.|+++++|++...+. +. +...|...|+|+
T Consensus 416 --------------------------ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 416 --------------------------AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred --------------------------eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 888876 346789999999999999975221 11 223588999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
+.+|+.+++||||+|++++||++.+ .....++.+|...|+++.|+|..+.||++|.|.+|+||.+.+..++.++.+|..
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred EecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 9999999999999999999999986 889999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcc
Q 011924 434 EISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|..+.|-.+|+.|++++.||-++
T Consensus 549 aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEE
Confidence 999999999999999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=196.92 Aligned_cols=212 Identities=20% Similarity=0.324 Sum_probs=177.8
Q ss_pred cccceeEEEEEE--cCcEEEEEecCceEEEEeCCC------C---------CceEEEeeecCCCCceeEEEEEeCCCCCe
Q 011924 186 GFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR------P---------GVSFCSRTTYDDNAITNAVEIYGSPSGAV 248 (475)
Q Consensus 186 ~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~------~---------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~ 248 (475)
+.+..++.+-+| +|.++++|+.|-.|++.+++. . .....++++.+|...|+++.| +|....
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F--HPre~I 186 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF--HPRETI 186 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee--cchhhe
Confidence 334556666666 999999999999999999861 1 112346888999999999999 998874
Q ss_pred EEEEEeCCCeEEEEECCCCeee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 325 (475)
|++|++|++|++||+.+.... +.|....+|. +++|+|.|.+|++|.+
T Consensus 187 -LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vr-----------------------------siSfHPsGefllvgTd 236 (430)
T KOG0640|consen 187 -LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVR-----------------------------SISFHPSGEFLLVGTD 236 (430)
T ss_pred -EEeccCCCeEEEEecccHHHHHHHHHhhccceee-----------------------------eEeecCCCceEEEecC
Confidence 999999999999999764433 4455677888 9999999999999999
Q ss_pred CCcEEEEECCCCceEEEe---ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CC-CceEEEEEcc
Q 011924 326 NPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NL-GAIRSIRYTS 400 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~-~~v~~l~~sp 400 (475)
...+++||+.+-++...- .+|.+.|+++.+++.+++-+||+.||.|+|||--. .+++.++.. |. ..|.+..|+.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEcc
Confidence 999999999988765433 35899999999999999999999999999999866 778877754 43 4799999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEec
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
+|+|+++.+.|..|++|.+.++..+..+.+
T Consensus 316 n~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred CCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 999999999999999999999877665543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=221.47 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=215.6
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
...+.|..|+-..+....-+ .+ +.++|..++| .+.++|+||.|-.|+||+... ..|.
T Consensus 28 lHsG~IQlWDYRM~tli~rF--de----------------HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---rrcl 86 (1202)
T KOG0292|consen 28 LHSGVIQLWDYRMGTLIDRF--DE----------------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---RRCL 86 (1202)
T ss_pred ecCceeeeehhhhhhHHhhh--hc----------------cCCccceeeecCCCCeEEecCCccEEEEEeccc---ceeh
Confidence 45688999997665443211 11 3357889999 788999999999999999876 4455
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
.++.+|-.-|..+.| ++.-.+ ++++|.|.+||||++.+++++..+. |...|.
T Consensus 87 ftL~GHlDYVRt~~F--HheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVM------------------------ 139 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFF--HHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM------------------------ 139 (1202)
T ss_pred hhhccccceeEEeec--cCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEE------------------------
Confidence 778899999999999 999888 9999999999999999999999988 888899
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCC--------C---------------------ceEEEeecCCCCeEEEEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--------G---------------------KTIASLCGHLDFSFASAW 355 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------~---------------------~~~~~l~~h~~~v~~~~~ 355 (475)
|.+|+|...++++++-|.+|++||+.. + -..+.++||...|.-++|
T Consensus 140 -----cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 140 -----CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred -----eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 999999999999999999999999852 1 012457899999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 356 HPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 356 sp~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
||.-.+|++|+.|..|++|.+..... .+-+..+|.+.|.++-|+|...++++.+.|++|+|||+...+.+.++..-.++
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe
Confidence 99999999999999999999964221 46677899999999999999999999999999999999998889888877889
Q ss_pred eEEEEEcCCCCeEEEEEecC
Q 011924 435 ISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~ 454 (475)
.+.++-+|..+.+++|-..|
T Consensus 295 FW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred EEEEEecCCcceeeeecCCc
Confidence 99999999998776654333
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-25 Score=203.41 Aligned_cols=292 Identities=13% Similarity=0.179 Sum_probs=218.9
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCce-EEEecc----CCCCCCCCCCCCccccccceeEEEEEE--cCcEEEE
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRS-QVLNVS----GHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 204 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvs 204 (475)
+..++..+....+|.+ .++.|.+|+..+++.. .++... .+..|... -..-+...|.++++ ++++|++
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~-----~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE-----SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc-----ccccccceeEEEEEcCCCcEEEe
Confidence 3445566666777775 4588999999999865 333321 12111111 11123346777777 9999999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEecc
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~ 283 (475)
|+.+..|.||+.++.... +.+.+|.+.|.+++|..-+ .-+++++.|++|++|+++....+.++- |+..|.
T Consensus 220 gg~d~~v~Iw~~~t~ehv---~~~~ghr~~V~~L~fr~gt---~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~--- 290 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHV---KVFKGHRGAVSSLAFRKGT---SELYSASADRSVKVWSIDQLSYVETLYGHQDGVL--- 290 (479)
T ss_pred cCCCceEEEecCcccchh---hcccccccceeeeeeecCc---cceeeeecCCceEEEehhHhHHHHHHhCCcccee---
Confidence 999999999999887765 5578999999999994333 348899999999999998877766554 888888
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
.+....-++.+-+|+.|+++++|++.... ...+.+|.+.+-|++|-.+ ..|+
T Consensus 291 --------------------------~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-~Hfv 342 (479)
T KOG0299|consen 291 --------------------------GIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-EHFV 342 (479)
T ss_pred --------------------------eechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-ccee
Confidence 77777777878888899999999995333 3467789999999999754 6799
Q ss_pred EEeCCCeEEEEECCCCCceEEEEec-C-----------CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE---EE
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKG-N-----------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE---QE 428 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~-~-----------~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~---~~ 428 (475)
+|+.+|.|.+|++.. .+++.+... | ...|++++..|...++|+|+.+|.|++|-+..+.... ..
T Consensus 343 sGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee
Confidence 999999999999976 666665542 1 1278999999999999999999999999998883322 22
Q ss_pred eccCCCeEEEEEcCCCCeEEEE-EecCCcceEEEEEeecc
Q 011924 429 IDFFGEISGISFSPDTESLFIG-VWDRTYGSLLEYGRCRN 467 (475)
Q Consensus 429 ~~~~~~i~~l~fspdg~~l~~~-~~D~~~~~ll~~~~~~~ 467 (475)
....|-|++++|+++|++|++| +....+|.+.-...+.+
T Consensus 422 ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~~~ 461 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSGKN 461 (479)
T ss_pred cccccEEEEEEEccCCCEEEEecccccccceeeEeecccc
Confidence 2367899999999999988877 44555665555544433
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=209.20 Aligned_cols=234 Identities=16% Similarity=0.206 Sum_probs=190.8
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEE-------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCS-------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL- 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~- 269 (475)
+..++++++..|.+.|||.......... ..+.+|.+.-..|+| ++.....+++++.|++|++||+.....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsW--n~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSW--NRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccc--ccccceeEeeccCCCcEEEEeccccccC
Confidence 6778889999999999998654422211 145566665567888 887777899999999999999975332
Q ss_pred ------eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC--CCce
Q 011924 270 ------SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM--TGKT 339 (475)
Q Consensus 270 ------~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~--~~~~ 339 (475)
...+. |...|. .++|+| ...+|+++++|+.+.|||+| +.++
T Consensus 214 ~~~~~p~~~~~~h~~~Ve-----------------------------DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVE-----------------------------DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred CccccceEEeecCCccee-----------------------------hhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 22333 677777 999999 67789999999999999999 5667
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEE
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVY 417 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iw 417 (475)
.....+|.+.+.|++|+| ++..|||||.|++|.+||+|+...+++++.+|...|.++.|||+. ..||+++.|+.+.||
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 777889999999999999 889999999999999999999999999999999999999999955 689999999999999
Q ss_pred ECCCC--------------eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 418 DVKSG--------------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 418 d~~~~--------------~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
|+..- +.+..-.+|.+.|..+.|+|+..+++++..+-.+-++.+.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 98642 1234445788899999999999998887777655444443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=223.75 Aligned_cols=233 Identities=14% Similarity=0.241 Sum_probs=205.6
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|..++| ..-+++++-.+|.|++||.+-.... ..+.+|.++|..|.| +|.+.. |++|+.|..|++|+..+.
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli---~rFdeHdGpVRgv~F--H~~qpl-FVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---DRFDEHDGPVRGVDF--HPTQPL-FVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHH---hhhhccCCccceeee--cCCCCe-EEecCCccEEEEEecccc
Confidence 35667777 6779999999999999998754433 667889999999999 999985 999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
+++.++. |-..|+ .+.|++.-.+++++++|.+|+||+.++++++..++||
T Consensus 84 rclftL~GHlDYVR-----------------------------t~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH 134 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVR-----------------------------TVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH 134 (1202)
T ss_pred eehhhhccccceeE-----------------------------EeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC
Confidence 9888776 788888 9999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-------C---------------------ceEEEEecCCCceEEEEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-------S---------------------ESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-------~---------------------~~~~~~~~~~~~v~~l~~ 398 (475)
..+|.|.+|||...+++++|-|.||||||+... + -..+.+.+|.-.|.-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 999999999999999999999999999998421 1 023456789999999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCC--CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 399 TSDGRYMATAEPADFVHVYDVKS--GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|.-..+++|+.|..|++|.+.. .+.+-+..+|.+.|+++.|+|....|++.+.|++++
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 99999999999999999998754 356667788999999999999999999999888876
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=202.00 Aligned_cols=235 Identities=17% Similarity=0.218 Sum_probs=195.6
Q ss_pred ccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 187 ~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
++.--|+++...++.+++|+.||.+++|+.... +..+..+|.+++..++|+........|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 445578888888999999999999999997632 2467789999999888875555445699999999999999887
Q ss_pred Ceeee-----eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC------
Q 011924 267 YQLSK-----HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM------ 335 (475)
Q Consensus 267 ~~~~~-----~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~------ 335 (475)
+.... .-.|..+|. +++..++|..+++|+.|..|.||+..
T Consensus 179 ~~~~~~~~~~~~GHk~~V~-----------------------------sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVD-----------------------------SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred chhhhhHHhHhccccccee-----------------------------EEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 65432 224788888 99999999999999999999999921
Q ss_pred -------------------CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE
Q 011924 336 -------------------TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396 (475)
Q Consensus 336 -------------------~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 396 (475)
++.++..+.||..+|.++.|++ ...++++++|.+|+.||+.. +..+..+.+. .++.++
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~-ksl~~i 306 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTN-KSLNCI 306 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccceeeeecC-cceeEe
Confidence 1236678899999999999988 67899999999999999987 6777777754 478999
Q ss_pred EEccCCCEEEEEcCCCeEEEEECCCCe---eEEEEeccCCCeEEEEEcCCCCeE-EEEEecCCcc
Q 011924 397 RYTSDGRYMATAEPADFVHVYDVKSGY---EKEQEIDFFGEISGISFSPDTESL-FIGVWDRTYG 457 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~fspdg~~l-~~~~~D~~~~ 457 (475)
..+|..++||+|+.|..|++||.+++. ...++.+|.+.|.++.|+|...++ ++|+.|+++.
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 999999999999999999999998753 456788999999999999977655 5678888764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=187.04 Aligned_cols=260 Identities=12% Similarity=0.101 Sum_probs=209.6
Q ss_pred eEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEE
Q 011924 136 LVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (475)
Q Consensus 136 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~ 212 (475)
.-+..+++...+. ++..+++|+++.+.......- ++..|..++. +...+++||.|..+.
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg------------------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG------------------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeecC------------------CCceeeeccccccccccccCCCCceEE
Confidence 3366666665554 678899999988866554332 2235666666 888999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC--Ceeeeeee-ccccEEeccCCceEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
+||+.+++.. +.+.+|.+.|+++.| +.+.. ++++|+-|.++++||.+. .++++.+. ....|.
T Consensus 85 vwDV~TGkv~---Rr~rgH~aqVNtV~f--NeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~--------- 149 (307)
T KOG0316|consen 85 VWDVNTGKVD---RRFRGHLAQVNTVRF--NEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS--------- 149 (307)
T ss_pred EEEcccCeee---eecccccceeeEEEe--cCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCcee---------
Confidence 9999987766 778899999999999 77766 599999999999999976 44555554 344555
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
++.+ .+..+++|+.||+++.||++.|+...-.-+| +|++++|+|+++..+.++-|+
T Consensus 150 --------------------Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 150 --------------------SIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred --------------------EEEe--cccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccc
Confidence 5555 4668899999999999999999877666555 799999999999999999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceE--EEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC-eEEEEEcCCCCe
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIR--SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTES 446 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~fspdg~~ 446 (475)
++++.|-.+ ++.+..+++|...-. ..+++....++++|+.||.|.+||+-....+..+..+... +.++.++|.-..
T Consensus 206 tlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 206 TLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eeeecccch-hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 999999876 899999999876433 4456667789999999999999999998888887777776 899999998877
Q ss_pred EEEEEec
Q 011924 447 LFIGVWD 453 (475)
Q Consensus 447 l~~~~~D 453 (475)
++++..-
T Consensus 285 f~~A~~~ 291 (307)
T KOG0316|consen 285 FITATGH 291 (307)
T ss_pred eeEecCC
Confidence 7777543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=215.53 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=168.7
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee--------eeeee-c
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL--------SKHFR-F 275 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~--------~~~~~-~ 275 (475)
||..|.|++|+..... ....+.+|.+.|.+++| +|+...+|++|+.|++|++|++.++.. +..+. |
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6778999999986543 24566789999999999 997434599999999999999976421 12233 5
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcE-EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~-l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
...|. +++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++
T Consensus 125 ~~~V~-----------------------------sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 125 KKKIS-----------------------------IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred CCcEE-----------------------------EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 56666 9999998875 4688999999999999998887776 667899999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEE-----EEEccCCCEEEEEcCCC----eEEEEECCC-Cee
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS-----IRYTSDGRYMATAEPAD----FVHVYDVKS-GYE 424 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~-----l~~spdg~~la~~~~dg----~i~iwd~~~-~~~ 424 (475)
|+|+|++|++++.|++|+|||+++ +..+..+.+|.+.+.. ..|++++.+|++++.++ .|+|||+++ +.+
T Consensus 175 wspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 175 WNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred ECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 999999999999999999999988 7788889999876433 34568999999887764 799999985 444
Q ss_pred EEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 KEQEID--FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 ~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+..... +.+.+......++|.++++|+.|+++.
T Consensus 254 l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 433322 223344444456688888999998874
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=222.34 Aligned_cols=234 Identities=18% Similarity=0.270 Sum_probs=191.7
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
+..+.| ..++|++++..|.|.+||+...........+..|...++++.| ++....+|++||.||+|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldf--h~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDF--HSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeee--ccCCccEEEecCCCceEEEEeeeccc
Confidence 334555 7899999999999999999875433323577889999999999 88888889999999999999999888
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC-ceEEEeec
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KTIASLCG 345 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~ 345 (475)
.+.++. ....++ .++|+| .+..|+++.+.|.+.+||+|.. ++...+..
T Consensus 168 S~~t~~~nSESiR-----------------------------DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 168 SKSTFRSNSESIR-----------------------------DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred ccccccccchhhh-----------------------------ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 777766 566777 999999 7889999999999999999954 56678889
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecCCCceEEEEEccCCC-EEEEEcC--CCeEEEEECCC
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGR-YMATAEP--ADFVHVYDVKS 421 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~--dg~i~iwd~~~ 421 (475)
|.++|.|+.|||++.+||||+.|+.|+|||+... ..+..++. ...+|.+++|-|..+ +||+++. |-.|+|||++-
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 9999999999999999999999999999999642 22444444 245899999999775 5666653 66899999987
Q ss_pred CeeE-EEEeccCCCeEEEEEcC-CCCeEEEEEecCCcc
Q 011924 422 GYEK-EQEIDFFGEISGISFSP-DTESLFIGVWDRTYG 457 (475)
Q Consensus 422 ~~~~-~~~~~~~~~i~~l~fsp-dg~~l~~~~~D~~~~ 457 (475)
.+.+ ..+..|...++.++|.. |...|.+++.|+++-
T Consensus 298 PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 298 PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 7654 45667889999999965 556788899998764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=204.08 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=186.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.-+.| +|++||+++.|.+..+|.+..........+..+|..+|..|.| ||+.++ +++|+.+..+++||+.++.
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~w--SPDdry-LlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMW--SPDDRY-LLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEE--CCCCCe-EEecCchHheeeccCCcch
Confidence 4666666 9999999999999999998766554445677889999999999 999997 8888889999999999999
Q ss_pred eeeeeecc--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 269 LSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 269 ~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
+...+.+. ..+. +.+|.|||..+++|+.|+.+..||+. |..+...++-
T Consensus 303 ~~~~y~~~~~~S~~-----------------------------sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv 352 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVS-----------------------------SCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV 352 (519)
T ss_pred hhhhcccCcCCCcc-----------------------------eeEEccCCceeEecCCCCcEEEecCC-cchhhccccc
Confidence 98888754 4555 99999999999999999999999985 5555566653
Q ss_pred C-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----------------------------------------CceEEE
Q 011924 347 L-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNL----------------------------------------SESVAV 385 (475)
Q Consensus 347 ~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~----------------------------------------~~~~~~ 385 (475)
. ..|.+++.++||+++++...|..|++++.... ...++.
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 3 46899999999999999988888888876431 111122
Q ss_pred EecCCCc--eEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCcce
Q 011924 386 LKGNLGA--IRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGS 458 (475)
Q Consensus 386 ~~~~~~~--v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~~ 458 (475)
+.||... +-.-+|-- +..++|+|+.|+.|+||+..+|+++..+.+|...|.+++|+|.. ..+|+|+.||+++-
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 2233221 22223432 44689999999999999999999999999999999999999965 56678899988853
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=190.67 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=182.4
Q ss_pred cCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee-ccccEEecc
Q 011924 207 FQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 207 ~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~s~ 283 (475)
..|.+.|.++..++ ...+.. ..-...+-.++| +++....+++++.||++++||+.. ..++..++ |...|.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s--~d~~D~LfdV~W--se~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~--- 108 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQS--YDTEDGLFDVAW--SENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY--- 108 (311)
T ss_pred cCceEEEEecCCCCCeEEEEe--eecccceeEeee--cCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE---
Confidence 36899999996444 333222 234456788999 888777899999999999999743 45666666 888888
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVT 361 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~ 361 (475)
++.|++ .+..+++++-|++|++|+...++.++++.||...|+..+|+| .+++
T Consensus 109 --------------------------Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 109 --------------------------SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred --------------------------EeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe
Confidence 999999 677888889999999999999999999999999999999999 8899
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCe-eEEEEeccCCCeEEEE
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGIS 439 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~ 439 (475)
++++|.|+++++||++.+++.+. +..|...|.++.|+. +.++|++|+.|+.|++||+++-+ ++..+.+|.-.|+.+.
T Consensus 163 fas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK 241 (311)
T ss_pred EEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEe
Confidence 99999999999999999887776 888998999999988 66799999999999999998754 4566778888999999
Q ss_pred EcCCC-CeEEEEEecCCcc
Q 011924 440 FSPDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 440 fspdg-~~l~~~~~D~~~~ 457 (475)
|||.. ..|++++.|-+++
T Consensus 242 ~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVR 260 (311)
T ss_pred cCcchhhHhhhccccceEE
Confidence 99964 5778889988774
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-25 Score=218.99 Aligned_cols=249 Identities=18% Similarity=0.255 Sum_probs=212.4
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEc--CcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVK--DKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
..+..+..|+..++..... .+.|| ...|.++++. +.+|++|+.|.++++||..+ ..|.
T Consensus 225 s~~~tl~~~~~~~~~~i~~-~l~GH----------------~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s---g~C~ 284 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNGYLILT-RLVGH----------------FGGVWGLAFPSGGDKLVSGSTDKTERVWDCST---GECT 284 (537)
T ss_pred CCCceeEEeecccceEEEe-eccCC----------------CCCceeEEEecCCCEEEEEecCCcEEeEecCC---CcEE
Confidence 4456677999877654332 23332 2468899995 99999999999999999765 3455
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
.++.+|.+.+.++.. . ..++++||.|.+|++|++++++.+..+. |..+|+
T Consensus 285 ~~l~gh~stv~~~~~--~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~------------------------ 335 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTI--D---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN------------------------ 335 (537)
T ss_pred EEecCCCceEEEEEc--c---CceEeeccCCceEEEEeccCcceEEEeccccccEE------------------------
Confidence 788899999999987 2 3358889999999999999999999999 999999
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 384 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~ 384 (475)
++..+ +.++++|+.|+.|.+||+.+++++..+++|..+|.++.+.+. ..+++|+.|++|++||+++..+++.
T Consensus 336 -----~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 336 -----CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred -----EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh
Confidence 88887 889999999999999999999999999999999999988665 8999999999999999988338999
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++.+|..-+..+.+ .+++|++++.|+.|++||..++.+++.+.. |.+.|..+++. ...+++++.|+++.
T Consensus 408 tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVK 477 (537)
T ss_pred hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeE
Confidence 99999988866665 477999999999999999999999999988 67889988886 46788888888775
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=221.04 Aligned_cols=235 Identities=16% Similarity=0.109 Sum_probs=190.2
Q ss_pred ccceeEEEEEE--cCcEEEEEecCceEEEEeCCCC----------------------------Cc---------------
Q 011924 187 FTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP----------------------------GV--------------- 221 (475)
Q Consensus 187 ~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~----------------------------~~--------------- 221 (475)
.+...|.+|.| +|+|||+||.||.|+||.+-.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 45568999999 9999999999999999987540 00
Q ss_pred eE--------------EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 222 SF--------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 222 ~~--------------~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
.. ....+.+|.+.|..|.| |.++ +|+++|.|.+||+|++....++..|.|+.-|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW--SKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT------- 413 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW--SKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT------- 413 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccc--ccCC--eeEeccccccEEeecCCCcceeeEEecCCeeE-------
Confidence 00 01234568888888999 8776 69999999999999999999999999999999
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
|++|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|++++|.|+|++.+.|+
T Consensus 414 ----------------------cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 414 ----------------------CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred ----------------------EEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEE
Confidence 999999 99999999999999999998766554444 347899999999999999999
Q ss_pred CCCeEEEEECCCCCceEEEEec--------CCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCeeEEEEeccC--CCe
Q 011924 367 QDKTCRIWDLRNLSESVAVLKG--------NLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEI 435 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~--------~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i 435 (475)
.+|.|++|+++. .+......- ....|+++.|.|.. ..|++.+.|..|+|||.++...+..+.++. +.-
T Consensus 471 ~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 471 FNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred eccEEEEEEccC-CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 999999999975 333322211 12379999999843 457777889999999998777777777654 344
Q ss_pred EEEEEcCCCCeEEEEEecCCc
Q 011924 436 SGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~D~~~ 456 (475)
....|+.||++|++|+.|..+
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred eeeeEccCCCEEEEeecCceE
Confidence 577899999999999977544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=202.98 Aligned_cols=237 Identities=19% Similarity=0.278 Sum_probs=201.9
Q ss_pred cccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 184 LEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 184 ~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
++..+...+++|.. ....+.+||.|..+.++|...+... .++.+|...|+.+.+ +|+... +++++.|..|++
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l---~~~~Gh~kki~~v~~--~~~~~~-v~~aSad~~i~v 287 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL---ATLKGHTKKITSVKF--HKDLDT-VITASADEIIRV 287 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhh---hhccCcceEEEEEEe--ccchhh-eeecCCcceEEe
Confidence 34444456888887 3489999999999999998876655 788899999999988 898875 899999999999
Q ss_pred EECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 262 FDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
|............ |..+|+ .+..+|.|.+|++++.|+.....|+++|..+
T Consensus 288 ws~~~~s~~~~~~~h~~~V~-----------------------------~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVT-----------------------------GLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred eccccccCccccccccccce-----------------------------eeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 9987655444443 889999 9999999999999999999999999999987
Q ss_pred EEeecC--CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 341 ASLCGH--LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 341 ~~l~~h--~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
...... .-.+++.+|||||.+|.+|..|+.|+|||+.+ +..+..+.+|.++|..++|+.+|-|||+++.|+.|++||
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 766532 23588999999999999999999999999977 668899999999999999999999999999999999999
Q ss_pred CCCCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 419 VKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 419 ~~~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++..+...++... ..++.++.|.+.|.+|++++.|-.+
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9987766666542 3479999999999999999777544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-25 Score=221.84 Aligned_cols=241 Identities=18% Similarity=0.201 Sum_probs=201.7
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCC--CCc-------------eEEEeeecCCCCceeEEEEEeCCCCCeEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDR--PGV-------------SFCSRTTYDDNAITNAVEIYGSPSGAVHFT 251 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~--~~~-------------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~ 251 (475)
...|+|+.| +|.+||+|+.|+.|.+|.... .+. -.+..++.+|.+.|..+.| +|++.+ ++
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~~-lv 145 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW--SPDDSL-LV 145 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc--CCCccE-EE
Confidence 347999999 999999999999999999772 111 1245677889999999999 999885 99
Q ss_pred EEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+++.|++|.+|+..+++.+..+. |...|. .+.|.|-|++||+-++|++|+
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s~VK-----------------------------Gvs~DP~Gky~ASqsdDrtik 196 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQSLVK-----------------------------GVSWDPIGKYFASQSDDRTLK 196 (942)
T ss_pred EecccceEEEEccccceeeeeeeccccccc-----------------------------ceEECCccCeeeeecCCceEE
Confidence 99999999999999998888888 888999 999999999999999999999
Q ss_pred EEECCCCceEEEeecC------CCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCCceEEEEecCCCceEEEEEcc
Q 011924 331 LVDSMTGKTIASLCGH------LDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h------~~~v~~~~~sp~g~~l~t~s~----dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 400 (475)
+|++.+-...+.+.++ ......+.|||||.+|++... -.++.|.+-.+ .+.-..+-+|.+++.+++|+|
T Consensus 197 vwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 197 VWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred EEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeCh
Confidence 9997766666666543 245788999999999998753 34788888744 777888999999999999998
Q ss_pred -----CCC------------EEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 401 -----DGR------------YMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 401 -----dg~------------~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
..+ .+|+|+.|+.|.||.....+++..+.. ....|.+++|+|||..|++++.||++. ++.|
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~-~i~F 354 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA-LIHF 354 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE-EEEc
Confidence 111 688999999999999987777666554 346899999999999999999999984 4444
Q ss_pred E
Q 011924 463 G 463 (475)
Q Consensus 463 ~ 463 (475)
.
T Consensus 355 e 355 (942)
T KOG0973|consen 355 E 355 (942)
T ss_pred c
Confidence 3
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=193.61 Aligned_cols=206 Identities=25% Similarity=0.427 Sum_probs=172.2
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCC---------ceEEE---eeecCCCCceeEEEEEeCCCCCeEEEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG---------VSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTA 252 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~---------~~~~~---~~~~~~~~~v~~l~~~~s~~g~~~l~s 252 (475)
++..|.+|.+ .|+++++|+.||.|.+||+.+.. ...|. .....|.-.|..+.|+....| +|.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mFts 119 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MFTS 119 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--eeec
Confidence 4457888888 79999999999999999997644 11121 122346667888999655555 7999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCCCcE
Q 011924 253 SNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDNPDG 329 (475)
Q Consensus 253 ~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~dg~i 329 (475)
+|-|.++++||..+-+....|+.+..|. +-++|| ...++|+|..+..|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VY-----------------------------shamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVY-----------------------------SHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceee-----------------------------hhhcChhhhcceEEEEecCCCcE
Confidence 9999999999999999999999888888 778888 35688889999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEe--------------cCCCceE
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLK--------------GNLGAIR 394 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~--------------~~~~~v~ 394 (475)
++.|+.+|...++|.||.+.|.++.|+| ..-.||||+.||+||+||+|....+...+. .|.+.|.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 9999999999999999999999999999 455788999999999999987645544443 4567899
Q ss_pred EEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 395 SIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 395 ~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
+++|+.+|+++++.+.|..+++|+..+|..
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcc
Confidence 999999999999999999999999988753
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=217.63 Aligned_cols=226 Identities=19% Similarity=0.252 Sum_probs=199.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCce---EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC--eeeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVS---FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKH 272 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~--~~~~~ 272 (475)
.+++|++||.||.|++|++...... .+...+..|..-|+.+.. ..+|+. |+++|.|-+|++|+.... -+..+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL--~~~~~t-lIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL--CGNGKT-LISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh--hcCCCc-eEEecCCceEEEeecccCcchhHhh
Confidence 6778999999999999998765542 234567789999999988 788876 999999999999999876 45556
Q ss_pred ee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE-CCCCcEEEEEeCCCcEEEEECCCCc--eEE-------
Q 011924 273 FR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ-SPDGKLLIIVGDNPDGLLVDSMTGK--TIA------- 341 (475)
Q Consensus 273 ~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~-sp~g~~l~~~~~dg~i~iwd~~~~~--~~~------- 341 (475)
+. |...|. |+++ -++..++|+||-|+.|++||+.+|. .++
T Consensus 113 ir~H~DYVk-----------------------------cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 113 IRTHKDYVK-----------------------------CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred hhcccchhe-----------------------------eeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 65 888888 9998 7899999999999999999999872 232
Q ss_pred -Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 342 -SLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 342 -~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.+. |+...|++++.++.|..|++|+..+.+++||.++ .+.+..+.+|...|+.+..++||+.+++|+.||+|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 233 7889999999999999999999999999999998 7778888899999999999999999999999999999999
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
....++.++..|...|+++.-+|+-..+.+|+.|+.+
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 9999999999999999999999999999999999865
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=193.47 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=221.8
Q ss_pred eeEEEEEE-----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 190 TQVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 190 ~~v~~l~~-----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
-||..|++ +|-+|++++.||.--+.+-+++... -++.+|.+.|+...+ ..+... .++++.|-+.++||.
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---gtfeghkgavw~~~l--~~na~~-aasaaadftakvw~a 88 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---GTFEGHKGAVWSATL--NKNATR-AASAAADFTAKVWDA 88 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE---EeeeccCcceeeeec--Cchhhh-hhhhcccchhhhhhh
Confidence 36777777 7889999999998877666655554 788899999999988 666654 889999999999999
Q ss_pred CCCeeeeeeeccc---cEEeccCCceEE------EEEEeecccceEEE-----EeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 265 GKYQLSKHFRFPW---PVNVSSSYCIIL------LCRLLNFMTEKVII-----CLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 265 ~~~~~~~~~~~~~---~v~~s~~~~~l~------~~~v~d~~~~~~~~-----~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
-++..+..|.|.. .+.|+.+...|. .++|+|+...+..+ +...|..+-|....+.+++++.+++|+
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 9999998888654 455887766663 57899987765433 233677888888888899989999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+||.++|+.+++|. ...+|.++..+++|++|.++ ..+.|++||..+ -.+++.+... ..|.+..++|+..++++|+.
T Consensus 169 LWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks-f~~lKs~k~P-~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS-FGLLKSYKMP-CNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred EEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccc-ccceeeccCc-cccccccccCCCceEEecCc
Confidence 99999999999998 56789999999999877666 557899999977 5666666543 46889999999999999999
Q ss_pred CCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecce
Q 011924 411 ADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNY 468 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~ 468 (475)
|..++.||..+|..+..+ .+|.++|.++.|||+|..-++|+.||++ .|+++.-+..+
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi-rlWQt~~~~~~ 302 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI-RLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceE-EEEEecCCCch
Confidence 999999999999998885 8899999999999999999999999998 46666555544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=197.20 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=197.0
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+.+.+ +...+++++.+-.|+||....... ......|.++|+.+.. +|+|.+ |+++++|++....|++++
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---~~~~~~h~~~V~~ls~--h~tgeY-llsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---PTSSRPHEEPVTGLSL--HPTGEY-LLSASNDGTWAFSDISSG 335 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeeccccccC---ccccccccccceeeee--ccCCcE-EEEecCCceEEEEEccCC
Confidence 35777777 667888999999999999876553 3566789999999999 999997 999999999999999999
Q ss_pred eeeeeeecc-c--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 268 QLSKHFRFP-W--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 268 ~~~~~~~~~-~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.++....+. . .++ +.+|+|||.+|.+|..|+.++|||+.++..+..|.
T Consensus 336 ~~lt~vs~~~s~v~~t-----------------------------s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 336 SQLTVVSDETSDVEYT-----------------------------SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred cEEEEEeeccccceeE-----------------------------EeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 887766643 2 244 89999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-CceEEEEEccCCCEEEEEcCCCeEEEEECC--C
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVK--S 421 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~~--~ 421 (475)
+|.++|.+++|+.+|-+||+++.|+.|++||+|. .+...++.... ..+.++.|.+.|++|+.++.+=+|++++-. +
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 9999999999999999999999999999999998 44555555432 368999999999999999887677777633 4
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..++.++..|.|..+++.|....+++++++.|..+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l 500 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAIL 500 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhhe
Confidence 55677777888999999999999999999999763
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=191.67 Aligned_cols=245 Identities=12% Similarity=0.132 Sum_probs=200.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.+++. +.+++++||.|..-.+|++.+.... ....+|+..|.++.| +.+|.+ |++|..+|.|+||...++.
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~F--shdgtl-LATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSF--SHDGTL-LATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEE--ccCceE-EEecCCCccEEEEEcccCc
Confidence 3555555 7789999999999999999987744 566789999999999 999985 9999999999999999988
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
....+. ....+. -+.|+|.+..|++|+.||.+.+|.+.++...+.+.||.
T Consensus 140 ~~~~~~~e~~die-----------------------------Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 140 EQWKLDQEVEDIE-----------------------------WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred eEEEeecccCceE-----------------------------EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 877775 455566 88999999999999999999999999988899999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---------------------------------------
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------------------------------------- 388 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--------------------------------------- 388 (475)
.++++=.|.|+|+.++++..||+|++|+..+ ++++..+..
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999999999999999999999976 565555431
Q ss_pred ------------CCCceEEEEEcc---CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 389 ------------NLGAIRSIRYTS---DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 389 ------------~~~~v~~l~~sp---dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+...+.++.+.| .=.+.|+|+-||+|.|||+.+.+ ++.+..|...|..+.|-+ ..+|++++.|
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACAN 347 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccC
Confidence 000112233333 33567899999999999998764 445556888899999999 7889888666
Q ss_pred CC-------cceEEEEEeecceeeecc
Q 011924 454 RT-------YGSLLEYGRCRNYSYLDS 473 (475)
Q Consensus 454 ~~-------~~~ll~~~~~~~~~~l~~ 473 (475)
|+ .|.++..+++|++.-|+-
T Consensus 348 g~v~~wDaRtG~l~~~y~GH~~~Il~f 374 (399)
T KOG0296|consen 348 GKVRQWDARTGQLKFTYTGHQMGILDF 374 (399)
T ss_pred ceEEeeeccccceEEEEecCchheeEE
Confidence 55 568899999999877653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=186.65 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=205.2
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
|.+++..+.. ..|..|.+|+.... ....+.+.| +...|..+.+ +++.|+++|.|.+|+.|
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkg----------------HsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKG----------------HSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred ECCCCCeEeecCCcceEEEEecccc-ccceeeecc----------------ccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 5554443333 24688999995433 233333333 3357999999 99999999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc---ccEEeccCCceE---
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---WPVNVSSSYCII--- 288 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~s~~~~~l--- 288 (475)
|..+++.. +....|.+-|+++.. +.-|..++.+++.|+++++||+++...++++... ..|.|...+..+
T Consensus 118 D~~tG~~~---rk~k~h~~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 118 DAETGKRI---RKHKGHTSFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ecccceee---ehhccccceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeec
Confidence 99886655 566789999999986 8888888999999999999999988888777533 344555444333
Q ss_pred ---EEEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECC----CCceEEEeecCC----CCeEEE
Q 011924 289 ---LLCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSM----TGKTIASLCGHL----DFSFAS 353 (475)
Q Consensus 289 ---~~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~----~~~~~~~l~~h~----~~v~~~ 353 (475)
..+++||+..+...-... .|+++..+|+|..+.+-+-|.++++||++ ..+++..+.+|. -....+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 368999998877665444 78999999999999999999999999998 334577887754 345678
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
+|+|+++.+.+|+.|+.+.+||... ...+..+.+|.+.|.++.|+|...+|.+++.|.+|.+=
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eccCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 9999999999999999999999954 78899999999999999999999999999999998764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=186.47 Aligned_cols=263 Identities=15% Similarity=0.121 Sum_probs=207.3
Q ss_pred cceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCce
Q 011924 133 LRNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGE 210 (475)
Q Consensus 133 lr~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~ 210 (475)
+..+.|.+.+..|.. ..++++++|+.........++ +.+++++.+| +...+++|+.||.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-------------------~~~plL~c~F~d~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-------------------HGAPLLDCAFADESTIVTGGLDGQ 76 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-------------------cCCceeeeeccCCceEEEeccCce
Confidence 344556655555554 578999999976654333332 3468999999 8889999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILL 290 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~ 290 (475)
|+.+|+...... ....|..++.+|.. ++.... +++||+|++|++||.+.......+..+..|.
T Consensus 77 vr~~Dln~~~~~----~igth~~~i~ci~~--~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy---------- 139 (323)
T KOG1036|consen 77 VRRYDLNTGNED----QIGTHDEGIRCIEY--SYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQGKKVY---------- 139 (323)
T ss_pred EEEEEecCCcce----eeccCCCceEEEEe--eccCCe-EEEcccCccEEEEeccccccccccccCceEE----------
Confidence 999999876533 45678999999998 665554 9999999999999998866666666666777
Q ss_pred EEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe--ecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL--CGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
++.. .|+.|++|+.+..+.+||+++....... ..-.-.++|+++-|++.-++.++-+
T Consensus 140 -------------------~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 140 -------------------CMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred -------------------EEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec
Confidence 5554 5788999999999999999976543322 2344578999999988889999999
Q ss_pred CeEEEEECCCC---CceEEEEecCC---------CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 369 KTCRIWDLRNL---SESVAVLKGNL---------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 369 g~v~iwd~~~~---~~~~~~~~~~~---------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
|.|.+=.+... .+....++.|. -+|.+++|+|-...||+|+.||.|.+||+.+.+.+.++......|.
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS 278 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence 99887666442 12344455553 2799999999888999999999999999999999999988888999
Q ss_pred EEEEcCCCCeEEEEEe
Q 011924 437 GISFSPDTESLFIGVW 452 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~ 452 (475)
.++|+.+|..||+|+.
T Consensus 279 slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeccCCCeEEEEec
Confidence 9999999999999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=213.11 Aligned_cols=281 Identities=14% Similarity=0.155 Sum_probs=219.2
Q ss_pred CCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccc--cceeEEEEEE--cCcEEEEEecCceEEEEe
Q 011924 141 SKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGF--TQTQVSTLAV--KDKLLVAGGFQGELICKH 215 (475)
Q Consensus 141 ~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~--~~~~lvsg~~dg~i~vw~ 215 (475)
.+..+|+. .|+.|+.|+........- .| .+... +..-|..++. +++.|++++.|-+|++|+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s-------~~-------~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPS-------TP-------YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcc-------cc-------hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 33446664 468899998654332110 00 01111 1124666655 788999999999999999
Q ss_pred CCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--eeeeeeccccEEeccCCceEEEEEE
Q 011924 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LSKHFRFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~v~~s~~~~~l~~~~v 293 (475)
..... .+|..++..|...|.|+++ -...+.++++|+-|+.|.+||++++. .+..+... +++-.+
T Consensus 102 ~~~~~-~~c~stir~H~DYVkcla~--~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~---------- 167 (735)
T KOG0308|consen 102 AHKDN-TFCMSTIRTHKDYVKCLAY--IAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLG---------- 167 (735)
T ss_pred cccCc-chhHhhhhcccchheeeee--cccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCC----------
Confidence 98766 7888999999999999998 34444579999999999999999873 33333311 111000
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
..+...|++++.++.|..+++|+..+.+++||.++++.+..|.||.+.|.++..++||+.++++|.||+|++
T Consensus 168 --------sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 168 --------SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred --------CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 012234559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
||+.. .+++.++..|...|+++..+|+=.++++|+.|+.|..-|+++......+.....+|..+..+...+-+.++.+|
T Consensus 240 WdLgq-QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 240 WDLGQ-QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eeccc-cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc
Confidence 99977 88999999999999999999999999999999999999999865444455556788888888666667888888
Q ss_pred CCcce
Q 011924 454 RTYGS 458 (475)
Q Consensus 454 ~~~~~ 458 (475)
+.+..
T Consensus 319 s~I~r 323 (735)
T KOG0308|consen 319 SSIKR 323 (735)
T ss_pred cccee
Confidence 87753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=176.01 Aligned_cols=233 Identities=21% Similarity=0.318 Sum_probs=188.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCC------CC------CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLD------RP------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~------~~------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
.|.+++| .|.+.++|+...++++-... .. .+....+...+|.+.|.|.+| +|.|.. +++|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w--s~~gel-iatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--SPCGEL-IATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe--cCccCe-EEecCCC
Confidence 5778888 88999999999998875321 11 112234556789999999999 999985 9999999
Q ss_pred CeEEEEECCCCe--ee---eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC----CCcEEEEEe-C
Q 011924 257 CGVRDFDMGKYQ--LS---KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP----DGKLLIIVG-D 325 (475)
Q Consensus 257 g~v~iwd~~~~~--~~---~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp----~g~~l~~~~-~ 325 (475)
.+|++.-.+... .. ..|. |.+.|. .++|-. .|.+|++++ .
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtir-----------------------------dl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIR-----------------------------DLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCcee-----------------------------eeEEecCCCcCceEEEecCCC
Confidence 999998664422 22 1333 666677 778743 456677664 5
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-------CCCceEEEEE
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-------NLGAIRSIRY 398 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~ 398 (475)
|..|++-|...|+..+.+.||.+.|.++ ++-++-.+++|++|.+||+||+|- ..++.++.. ..++|.+++.
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEE
Confidence 6778888989999999999999999876 333789999999999999999987 667776643 2258999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|.|++|++|-.|....+||++.+..++.+..|...|.++.|||...||++++.|..++
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999998775
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=200.89 Aligned_cols=231 Identities=23% Similarity=0.304 Sum_probs=188.4
Q ss_pred eeEEEEEEc----CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 190 TQVSTLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 190 ~~v~~l~~~----~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
..|++++|. ..+.++++ -.+.+++....... +++..-...+.++.| ..+|+ ++++|...|.|++||+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~---k~~srFk~~v~s~~f--R~DG~-LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVR---KTFSRFKDVVYSVDF--RSDGR-LLAAGDESGHVKVFDMK 98 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecchhhhh---hhHHhhccceeEEEe--ecCCe-EEEccCCcCcEEEeccc
Confidence 468888882 24555554 45777876654433 344445667899999 88998 49999999999999987
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
+...++.+. |..|+. .+.|+| ++..|++|++|+.+++||+.+......+
T Consensus 99 ~r~iLR~~~ah~apv~-----------------------------~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVH-----------------------------VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred cHHHHHHHhhccCcee-----------------------------EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 766677776 888999 889999 5566778888999999999988876689
Q ss_pred ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 344 CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 344 ~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
.+|+++|+|.+|+| ++..++||+.||+||+||+|.....+.++. |..+|..+.|-|.|..+|+|+.. .|+|||+.+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G 227 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTG 227 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCC
Confidence 99999999999999 677999999999999999998556666665 67799999999999999999865 6999999865
Q ss_pred ee-EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 423 YE-KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 423 ~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
.. +.....|...|+|+.+..++..|++|+-|+.++.+
T Consensus 228 ~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 228 GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVF 265 (487)
T ss_pred ceehhhhhcccceEEEEEeecCCceEeecccccceEEE
Confidence 44 44444599999999999999999999999988644
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-23 Score=181.91 Aligned_cols=232 Identities=18% Similarity=0.189 Sum_probs=192.1
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC--CCeEEEEEC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDM 264 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~--dg~v~iwd~ 264 (475)
...|.+|.+ +|.+|++++.|..+++||...+... .+...++-.+..+.|. +++. . ++.++. |.+||..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---~ti~skkyG~~~~~Ft-h~~~-~-~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---KTINSKKYGVDLACFT-HHSN-T-VIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---eEeecccccccEEEEe-cCCc-e-EEEccCCCCCceEEEEe
Confidence 457999999 8999999999999999999876655 4555555567777774 3333 3 444444 889999999
Q ss_pred CCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 265 GKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.+.+.++.|. |...|+ .++.+|-+..+++++.|++|++||++..++...+
T Consensus 88 ~dNkylRYF~GH~~~V~-----------------------------sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVN-----------------------------SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred ecCceEEEcCCCCceEE-----------------------------EEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 9999999999 899999 9999999999999999999999999988887766
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecC---CCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGN---LGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~---~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..-.. ..++|.|.|-++|+++....|++||+|.. ..|..++.-. ....+.+.|||||++|+.+...+.+++.|.
T Consensus 139 ~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 139 NLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 53333 34799999999999998889999999975 3455555433 567889999999999999999999999999
Q ss_pred CCCeeEEEEeccCCC---eEEEEEcCCCCeEEEEEecCCcc
Q 011924 420 KSGYEKEQEIDFFGE---ISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~---i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
-+|..+..+..+... .....|+||++++++|+.||++.
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence 999988887766532 26788999999999999998874
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=187.57 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=170.5
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
+.+.+|.+.+..|+| +.+|.. +++|+.|+++.+|+++..+...... |...|.
T Consensus 14 r~~~~~~~~v~Sv~w--n~~g~~-lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd---------------------- 68 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAW--NCDGTK-LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD---------------------- 68 (313)
T ss_pred HHhhhhhhcceEEEE--cccCce-eeecccCCceEEEEecchhhhhhhcccCCCcchh----------------------
Confidence 344578888999999 999997 9999999999999998775544333 555666
Q ss_pred EEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-
Q 011924 303 ICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS- 380 (475)
Q Consensus 303 ~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~- 380 (475)
.++|+| ...+|++++.|..|++||++.++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++..
T Consensus 69 -------ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 69 -------QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred -------hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 788888 77899999999999999999999999888655544 47899999999999999999999876521
Q ss_pred ---------------------------------------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 381 ---------------------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 381 ---------------------------------------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+++..+++|.....++.|+|+|+++|+|+.|..+.+||+..
T Consensus 141 ~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 35566677888888999999999999999999999999999
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.-+.+.+..+.-+|+.++||.||++||+|+.|..+
T Consensus 221 LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 221 LICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred hhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 88999999999999999999999999999999765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-25 Score=194.56 Aligned_cols=232 Identities=13% Similarity=0.157 Sum_probs=196.0
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE-----eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS-----RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+-|-.| +|++|++|+.||-|-+|+..+++...-. ..+.-+..+|.|+.| |.+... +++|+.||.|++|.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F--SRDsEM-lAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF--SRDSEM-LASGSQDGKIKVWR 291 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee--cccHHH-hhccCcCCcEEEEE
Confidence 3444444 9999999999999999998876633111 122335678999999 999875 99999999999999
Q ss_pred CCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 264 MGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 264 ~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
+++|++++.|. |...|+ |+.||.|+..+++++.|.++++--+.+|+++.
T Consensus 292 i~tG~ClRrFdrAHtkGvt-----------------------------~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVT-----------------------------CLSFSRDNSQILSASFDQTVRIHGLKSGKCLK 342 (508)
T ss_pred EecchHHHHhhhhhccCee-----------------------------EEEEccCcchhhcccccceEEEeccccchhHH
Confidence 99999999987 888899 99999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC--CCceEEEEEccC-CCEEEEEcCCCeEEEEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSD-GRYMATAEPADFVHVYD 418 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spd-g~~la~~~~dg~i~iwd 418 (475)
.+.||...|....|.++|+.+++++.||+|+||+..+ ..++.+++.. .-+|.++..-|. -.+++++...++|.|.+
T Consensus 343 EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 343 EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred HhcCccccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 9999999999999999999999999999999999977 7788887653 357888887774 46888888889999999
Q ss_pred CCCCeeEEEEec---cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 419 VKSGYEKEQEID---FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 419 ~~~~~~~~~~~~---~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+. |..++.+.. ..|...+.+.||.|.++.+.+.|+.+
T Consensus 422 ~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vl 461 (508)
T KOG0275|consen 422 MQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVL 461 (508)
T ss_pred cc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEE
Confidence 75 566666654 23667788899999999999998754
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=201.40 Aligned_cols=249 Identities=18% Similarity=0.211 Sum_probs=207.4
Q ss_pred CCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEE
Q 011924 173 VAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFT 251 (475)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~ 251 (475)
.+|.+...+.+-...++..|.++++ +.+.++..+..+.|++|+..+.+ |.++.... .+.+..| .|.+++ ++
T Consensus 357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k---ciRTi~~~--y~l~~~F--vpgd~~-Iv 428 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK---CIRTITCG--YILASKF--VPGDRY-IV 428 (888)
T ss_pred CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc---eeEEeccc--cEEEEEe--cCCCce-EE
Confidence 3344445555556667888999999 55666666678999999988644 34554443 5666666 888876 99
Q ss_pred EEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+|...|.+.+||+....++.+++ |.+.+- .++.+||++.+++|+.|.+|+
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-----------------------------si~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVETIRAHDGAIW-----------------------------SISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred EeccCCceEEEEeehhhhhhhhhcccccee-----------------------------eeeecCCCCceEEecCCcEEE
Confidence 99999999999999988887777 888888 999999999999999999999
Q ss_pred EEECC-----CCceEEEeec-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE
Q 011924 331 LVDSM-----TGKTIASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 331 iwd~~-----~~~~~~~l~~-------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 398 (475)
+||.. .|.....+.- -.+.|.|+.+||||++||.+--|.||+||-+.+ -+-...+-||.-||.++..
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEec
Confidence 99974 1222111211 356799999999999999999999999999976 6777888999999999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
|||++.++|||.|..|+||-+.=|.+.+.+..|...|.++.|-|....+++++.|+.++.+
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 9999999999999999999999999999999999999999999999999999999988755
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=182.53 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=193.4
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeee
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHF 273 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (475)
|.+.|++|++++.|+.|+|+.++.++.......+.+|.++|.-++|. +| -|. +|++++.||.|.||.-+.++..+..
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~-iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGT-ILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCc-EeeEeecCceEEEEecCCCchhhhh
Confidence 44489999999999999999999888755567889999999999997 55 455 6999999999999998887544332
Q ss_pred e---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCC-c--eEEEeec
Q 011924 274 R---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTG-K--TIASLCG 345 (475)
Q Consensus 274 ~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~-~--~~~~l~~ 345 (475)
. |...|+ +++|.| -|-+|++++.||.|.|.+.+.. . .......
T Consensus 97 e~~~h~~SVN-----------------------------sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 97 EHAAHSASVN-----------------------------SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred hhhhhcccce-----------------------------eecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 2 788899 999998 5778999999999999988743 2 2233457
Q ss_pred CCCCeEEEEEecC---C-----------CEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCceEEEEEccCC----CEEE
Q 011924 346 HLDFSFASAWHPN---G-----------VTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDG----RYMA 406 (475)
Q Consensus 346 h~~~v~~~~~sp~---g-----------~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~spdg----~~la 406 (475)
|.-.|.+++|.|. | +.|++|+-|..|+||+..+.. ..-.++.+|.+.|+.++|.|.- ..||
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999999995 5 579999999999999997631 3445588999999999999954 4899
Q ss_pred EEcCCCeEEEEECCCC---eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeec
Q 011924 407 TAEPADFVHVYDVKSG---YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~ 466 (475)
+++.||+|.||-.... .....+..+...+..++||+.|+.|++++.|..+.-+-+-..+.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 9999999999986532 12223344667899999999999999999998886555544443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=186.62 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=183.1
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEe
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 226 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~ 226 (475)
.+..-.+|+.+++...-.+. +.+-|.+++| +.++|++||.+.-++|++++.++-. ..
T Consensus 79 adftakvw~a~tgdelhsf~-------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p~ 137 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFE-------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--PK 137 (334)
T ss_pred ccchhhhhhhhhhhhhhhhh-------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC--ch
Confidence 45666777777764322111 2345778888 8899999999999999999887654 35
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
-..+|.+.|..+.| +...+. +++++.|++||+||.++++.++.+..+.+|+
T Consensus 138 E~~ghtg~Ir~v~w--c~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-------------------------- 188 (334)
T KOG0278|consen 138 EISGHTGGIRTVLW--CHEDKC-ILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-------------------------- 188 (334)
T ss_pred hhcCCCCcceeEEE--eccCce-EEeeccCCceEEEEeccCcEEEEEecCCCCc--------------------------
Confidence 66789999999999 666665 7777899999999999999999999999999
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
++.++++|++|.++ ..+.|..||..+-.++..++ -.-.|.+...+|+...+++|+.|..++.||..+ +..+..+
T Consensus 189 ---SlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~ 262 (334)
T KOG0278|consen 189 ---SLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSY 262 (334)
T ss_pred ---ceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC-Cceeeec
Confidence 99999999988776 45679999999888887776 355688999999999999999999999999977 6666664
Q ss_pred -ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 387 -KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 387 -~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
++|.++|.+++|+|+|...|+|+.||+|+||-+..++
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 8999999999999999999999999999999976554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=198.76 Aligned_cols=259 Identities=17% Similarity=0.187 Sum_probs=183.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCce--EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.|+++++ .|..|++|+.|..|++||+...... ....+.......|+++.| ++.|.. |++.+.....+|+|-..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~-iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQ-ILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCe-EEEEecCcceeEEccCC
Confidence 6888888 8999999999999999998654422 112344556667999999 999997 55555677899999876
Q ss_pred CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCc-eEEEee
Q 011924 267 YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGK-TIASLC 344 (475)
Q Consensus 267 ~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~ 344 (475)
.......+....|. |+.. ...+.-.++|.+|+| +...+++++.||+++|||+...+ .+.+++
T Consensus 246 ~~~~e~~KGDQYI~--------------Dm~n--TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIR--------------DMYN--TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred ceeeeeeccchhhh--------------hhhc--cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 66554433222221 0000 000111233889999 55678999999999999998543 444443
Q ss_pred -----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCC--ceEEEEEccCCCEEEEEcCCCeEE
Q 011924 345 -----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 345 -----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~--~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
+-.-++..|+|+|+|++||+|+.||.|.+|+.++... ....-.+|.. .|+++.||+||++|++-+.|++++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2345789999999999999999999999999865322 2333455665 899999999999999999999999
Q ss_pred EEECCCCe-eEEEEeccC--CCeEEEEEcCCCCeEEEEEe--cCCcceEEEEEeecce
Q 011924 416 VYDVKSGY-EKEQEIDFF--GEISGISFSPDTESLFIGVW--DRTYGSLLEYGRCRNY 468 (475)
Q Consensus 416 iwd~~~~~-~~~~~~~~~--~~i~~l~fspdg~~l~~~~~--D~~~~~ll~~~~~~~~ 468 (475)
+||+++.+ ++....+.. -+-+.++|||+.+.|++|.. .+.....|.|....++
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce
Confidence 99998754 333333333 35678999999999998843 2222335555554443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=189.88 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=232.7
Q ss_pred eeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceE
Q 011924 135 NLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 211 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i 211 (475)
...|+++...+...+ ++-+-+|+..+++..+-+..... .++ .....+|.|++| +..+|++|+.||+|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq--------d~f--MMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ--------DNF--MMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh--------cce--eecccceEEEeecccHHHhhccCcCCcE
Confidence 355888888877754 68899999999987654433210 000 112347999999 88999999999999
Q ss_pred EEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEE
Q 011924 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILL 290 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~ 290 (475)
++|.+.++.-. .++...|...|+++.| |.++.. +++++.|.++|+.-+..|++++.|+ |...|+
T Consensus 288 KvWri~tG~Cl--RrFdrAHtkGvt~l~F--SrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn---------- 352 (508)
T KOG0275|consen 288 KVWRIETGQCL--RRFDRAHTKGVTCLSF--SRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN---------- 352 (508)
T ss_pred EEEEEecchHH--HHhhhhhccCeeEEEE--ccCcch-hhcccccceEEEeccccchhHHHhcCcccccc----------
Confidence 99999876544 2344578999999999 999986 8999999999999999999999998 888888
Q ss_pred EEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEec-CCCEEEEEeC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHP-NGVTFATGNQ 367 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp-~g~~l~t~s~ 367 (475)
.+.|.++|..+++++.||+|++|+..++.++.+++. ...+|.++-.-| +...++.++.
T Consensus 353 -------------------~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 353 -------------------EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred -------------------ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 999999999999999999999999999999988874 345788888778 6778999999
Q ss_pred CCeEEEEECCCCCceEEEEecC---CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 368 DKTCRIWDLRNLSESVAVLKGN---LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~---~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
..+|.|.++. ++.++.+... .+...+.+.||.|.++++.+.|+.++.|.+.+|.....+..|...+.+++-+|..
T Consensus 414 sntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq 491 (508)
T KOG0275|consen 414 SNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ 491 (508)
T ss_pred CCeEEEEecc--ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCccc
Confidence 9999999995 7788887642 3456678899999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
+.|++-+.|+.++
T Consensus 492 NllAsYsEDgllK 504 (508)
T KOG0275|consen 492 NLLASYSEDGLLK 504 (508)
T ss_pred chhhhhcccchhh
Confidence 9999999998764
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=184.14 Aligned_cols=233 Identities=17% Similarity=0.251 Sum_probs=191.2
Q ss_pred cceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 188 ~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
+..+|+++|+++.++|+|+.|-+|++||+...... .....|.+.|+++.|+.....+ .|++|+.||.|.+|+....
T Consensus 42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~~ql---g~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 42 HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQL---GILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccceeEEEecceeEeccCCCCcEEEEeccchhhh---cceeccccceEEEEecCCcchh-heeeecCCCcEEEEEcCCe
Confidence 45689999999999999999999999999875544 5566789999999994222222 4999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
.++..++ |...|+ .++++|.|++.++.+.|+.+++|++-.|+.-..+.-
T Consensus 118 ~~~~slK~H~~~Vt-----------------------------~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L- 167 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVT-----------------------------DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL- 167 (362)
T ss_pred EEeeeecccccccc-----------------------------eeEecCCCceEEEEcCCceeeeehhhcCccceeecc-
Confidence 9999988 888899 999999999999999999999999998876554442
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
......+.|+|.|.+++.+.+++ |-||.+.+ .+....+... ..+.++.|- ++..|++|..++.|.+||..++.+..
T Consensus 168 ~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~-A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 168 KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDN-ASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred CCcceeeEEcCCCCEEEEEeccE-EEEEeccc-HhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccce
Confidence 22334499999999999998875 99999876 3444443332 345566664 56789999999999999999899999
Q ss_pred EEeccCCCeEEEEE--cCCCCeEEEEEecCCcce
Q 011924 427 QEIDFFGEISGISF--SPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 427 ~~~~~~~~i~~l~f--spdg~~l~~~~~D~~~~~ 458 (475)
.+..|..+|-++.+ .|++.+|++++.||.+..
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 99999999999984 567899999999998863
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=200.70 Aligned_cols=257 Identities=15% Similarity=0.234 Sum_probs=201.9
Q ss_pred EecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 138 WATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 138 ~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
|.+...+|++. -+..|++|+.... ...+-.+.|| ..+|.+++| .|..++++++|+.|++
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH----------------~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGH----------------RKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecC-cceehhhhcc----------------hhhhhhhhccccCCeeeeeecceeeee
Confidence 66655566664 4688999987652 2232223332 236888888 8999999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----ccccEEeccCCceEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----FPWPVNVSSSYCIIL 289 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~s~~~~~l~ 289 (475)
||++++....+. .....+.++.+ +|++..+|++|+.|+.|+.||+++++.++.+. ....+.|-+.+....
T Consensus 285 wDtETG~~~~~f----~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 285 WDTETGQVLSRF----HLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred eccccceEEEEE----ecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence 999987755322 23456789999 99997779999999999999999999877655 344555777776663
Q ss_pred ------EEEEeecccceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCC--CCeEEE
Q 011924 290 ------LCRLLNFMTEKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHL--DFSFAS 353 (475)
Q Consensus 290 ------~~~v~d~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~--~~v~~~ 353 (475)
.++||+...+-.++-+. .+.|+..+|+++.+++-+-+..|.++.+... .....++||. ++...+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 68999888776665433 5668899999999999889999999886532 2234567775 566778
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEE
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYD 418 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd 418 (475)
.|||||.+|++|+.||.|.+||.++ .+.+..+++|.+++..+.|+|.. ..+|+++.+|.|++|+
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999976 78899999999999999999954 5899999999999996
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=209.87 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=199.6
Q ss_pred cceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 188 ~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
....+.++.+..+++++|+.++.|.+|+....... ...+.+|.+.|.++++ .. +...+++|+.|.++++||+.++
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i--~~~l~GH~g~V~~l~~--~~-~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI--LTRLVGHFGGVWGLAF--PS-GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEE--EeeccCCCCCceeEEE--ec-CCCEEEEEecCCcEEeEecCCC
Confidence 44568888888999999999999999998764433 2338899999999999 43 3445999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h 346 (475)
++...+. |...+. ++.. ...++++|+.|.+|++|++.+++.+..+.+|
T Consensus 282 ~C~~~l~gh~stv~-----------------------------~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h 330 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVR-----------------------------CLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH 330 (537)
T ss_pred cEEEEecCCCceEE-----------------------------EEEc--cCceEeeccCCceEEEEeccCcceEEEeccc
Confidence 9999998 787777 5554 4567788899999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEK 425 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~ 425 (475)
.++|+++..+ +.++++|+.|++|+|||++. .++++.+.+|.+.|.++.+.+. .++++|+.|+.|++||+.+. +++
T Consensus 331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred cccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence 9999999996 88999999999999999986 8999999999999999988765 79999999999999999999 899
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+..|.+-+.++.+ .+++|++++.|+++.
T Consensus 407 ~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hhhcCCccccccccc--ccceeEeccccccEE
Confidence 999999988877666 567999999998765
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=194.01 Aligned_cols=260 Identities=16% Similarity=0.175 Sum_probs=196.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+++.. -=..++.|..+|+|.++++...+... .+....+.|+.++| ..+|..++++|+..|.+.+||++..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~---sFk~d~g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM---SFKQDWGRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEE---EEEccccceeEEEe--ccCCCeeEEeccCCceEEEEEcCCC
Confidence 35555555 23567788888888888888766553 23333588999999 9999998999988999999999876
Q ss_pred eeeeeee--c-----------cccEEec--------------cCC-------------------------ceEE------
Q 011924 268 QLSKHFR--F-----------PWPVNVS--------------SSY-------------------------CIIL------ 289 (475)
Q Consensus 268 ~~~~~~~--~-----------~~~v~~s--------------~~~-------------------------~~l~------ 289 (475)
+.+.... | ..||.++ ++| ..+.
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 6543322 1 1122111 000 0000
Q ss_pred -----------------------------------------------------------------EEEEeecccceEE--
Q 011924 290 -----------------------------------------------------------------LCRLLNFMTEKVI-- 302 (475)
Q Consensus 290 -----------------------------------------------------------------~~~v~d~~~~~~~-- 302 (475)
..+.|+..+....
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 1345555443321
Q ss_pred --EEe------eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe---ecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 011924 303 --ICL------LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTC 371 (475)
Q Consensus 303 --~~~------~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~t~s~dg~v 371 (475)
.+. ..+.+++.++.|++.+.|+..|.|-+|++++|-...++ ..|..+|+.++..--++.+++++.+|.+
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 111 25678999999999999999999999999999888888 4799999999998888999999999999
Q ss_pred EEEECCCCC----------------------------------------ceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 372 RIWDLRNLS----------------------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 372 ~iwd~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
++||..+.. +.++.+.+|.+.|+.+.|||||++|++++.|
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred EEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 999985411 1234456789999999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 412 DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
++|++||+.++.++-.+. ...++..+.|||+|.+||+...|..
T Consensus 598 ~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQN 640 (910)
T ss_pred CcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence 999999999998775543 5678999999999999999988743
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=179.47 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=196.5
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
-.|++|+| ...++++|+.||+|++|++...+... .+....|.++|.+++| +.+|.. +++|+.|+.+++||+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~W--sddgsk-Vf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCW--SDDGSK-VFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEE--ccCCce-EEeeccCCceEEEEccC
Confidence 35888888 56788899999999999998764332 3666789999999999 999987 88889999999999999
Q ss_pred CeeeeeeeccccEE---eccCC--ceEE------EEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 267 YQLSKHFRFPWPVN---VSSSY--CIIL------LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 267 ~~~~~~~~~~~~v~---~s~~~--~~l~------~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
++....-.|..+|. +-+.. ..|+ +++.||....+++.++. .++++. --..+++++..++.|.+|
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D--v~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD--VLYPMAVVATAERHIAVY 181 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh--ccCceeEEEecCCcEEEE
Confidence 98776666887777 22222 2332 67888888877776544 344433 234577777788888888
Q ss_pred ECCCCceEE-Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecCC---------CceEEEEEcc
Q 011924 333 DSMTGKTIA-SLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNL---------GAIRSIRYTS 400 (475)
Q Consensus 333 d~~~~~~~~-~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~---------~~v~~l~~sp 400 (475)
+++.+.... .++ .-.-.++|++..++....|.|+-.|.|.|-.+..+ .+.-.+++.|. -+|.+++|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 887553221 111 12346889999998888899999999999988652 13344455554 2688999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE-Eec
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-VWD 453 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~-~~D 453 (475)
....|++++.||++.+||-.....+.....|..+|++.+|+.+|.+++-+ +.|
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 88899999999999999987777777878899999999999999999865 444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=183.20 Aligned_cols=276 Identities=13% Similarity=0.143 Sum_probs=209.2
Q ss_pred cceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc-EEEEEecC
Q 011924 133 LRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK-LLVAGGFQ 208 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~-~lvsg~~d 208 (475)
++.+-|.+....+.++. ++.+.++.........+.+ -++...||-+.+| +|. .++++|..
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS----------------~~l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS----------------IHLEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhhee----------------eeeccCccceeeecCCCceEEEecccc
Confidence 34444555555555543 4666666543222222211 1233456777766 777 89999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
.-++.||+.+.+..............+....+ |+++++ ++..+..|.|.+....+++.+..++..+.|.
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV--Shd~~f-ia~~G~~G~I~lLhakT~eli~s~KieG~v~-------- 348 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEV--SHDSNF-IAIAGNNGHIHLLHAKTKELITSFKIEGVVS-------- 348 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEe--cCCCCe-EEEcccCceEEeehhhhhhhhheeeeccEEe--------
Confidence 99999999876654322222233445666677 999996 7777799999999999999999999999999
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC--eEEEEEecCCCEEEEEe
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF--SFASAWHPNGVTFATGN 366 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~--v~~~~~sp~g~~l~t~s 366 (475)
.++|+.+|+.|++++.+|.|.+||++..++++++.- .+. -+++|.+++|.+||+|+
T Consensus 349 ---------------------~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 349 ---------------------DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGS 406 (514)
T ss_pred ---------------------eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEecc
Confidence 999999999999999999999999999999988873 333 45678889999999999
Q ss_pred CCCeEEEEECCC-----CCceEEEEecCCCceEEEEEccCCCEEEEEcC--CCeEEEEECCCCeeEEEEec---cCCCeE
Q 011924 367 QDKTCRIWDLRN-----LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP--ADFVHVYDVKSGYEKEQEID---FFGEIS 436 (475)
Q Consensus 367 ~dg~v~iwd~~~-----~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~i~ 436 (475)
..|.|.|||..+ ..+|+..+..-..+|+++.|+|++++||.+|. .+.+++..+.+......+.. .-+.|+
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 999999999642 24577777777789999999999999999886 56899988887654443332 236799
Q ss_pred EEEEcCCCCeEEEEEecCCcc
Q 011924 437 GISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++|||.|-+|++|-.+|.++
T Consensus 487 c~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred EEEecCCCceEEeecCCCcee
Confidence 999999999999999988764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=199.41 Aligned_cols=277 Identities=17% Similarity=0.258 Sum_probs=218.5
Q ss_pred eeecc-cceeEEecCCCeEEEe-cCCeEEEEecCCC-CceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEE
Q 011924 128 ILHFQ-LRNLVWATSKHDVYLM-SHFSVIHWSSLTS-SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVA 204 (475)
Q Consensus 128 ~~h~~-lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvs 204 (475)
..|+. +..++|.+++..|++. +++.|.+|...+. ...+.++. .+..|++++..+++|++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~------------------~g~~v~~ia~~s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI------------------SGELVSSIACYSNHFLT 71 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc------------------cCceeEEEeecccceEE
Confidence 34554 3445577777777765 6789999998766 33333321 33478999999999999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEecc
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~ 283 (475)
|+.+++|.++.+...... .++..-.-++.++++ +.+|++ ++.||.|-.|++-++........+. |..+|.
T Consensus 72 ~s~~~tv~~y~fps~~~~---~iL~Rftlp~r~~~v--~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl--- 142 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEED---TILARFTLPIRDLAV--SGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL--- 142 (933)
T ss_pred eeccceEEEeeCCCCCcc---ceeeeeeccceEEEE--ecCCcE-EEeecCceeEEEEeccccchheeecccCCcee---
Confidence 999999999999876543 122223446788888 899986 9999999999999998877777776 899999
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC--------CCCeEEEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH--------LDFSFASAW 355 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h--------~~~v~~~~~ 355 (475)
++.|+|++++||+.+-||.|++|++.++.+..++.+- ...+..++|
T Consensus 143 --------------------------~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 143 --------------------------QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred --------------------------eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeee
Confidence 9999999999999999999999999999877776541 334567899
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC
Q 011924 356 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 356 sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
+|+|..|+..+.|++|++|+... ......+.. +...+..+.|+|+|+|||+++.+|.|.|||+++.+. .....
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~ 271 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKR 271 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccc
Confidence 99988899999999999999976 666666654 334589999999999999999999999999998322 33456
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 434 EISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
.|.+++|-|+++.|-.-.+-|+.+....+
T Consensus 272 ~Vc~~aw~p~~n~it~~~~~g~~~~~~~i 300 (933)
T KOG1274|consen 272 AVCCEAWKPNANAITLITALGTLGVSPAI 300 (933)
T ss_pred eeEEEecCCCCCeeEEEeeccccccChhh
Confidence 89999999999998877777776654443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=211.88 Aligned_cols=227 Identities=15% Similarity=0.234 Sum_probs=202.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.++.. .++.+++||.+..+-+|.+...... ..+.+|.++|.+|.| ++... ++++|+.+|+|++||++..+
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f--~~~E~-LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTF--DTSER-LLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeec--Ccchh-hhcccccCCceeeeehhhhh
Confidence 4455554 6789999999999999988765544 346789999999999 87776 59999999999999999999
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
.++++. |...+. .+.|+|-+.+++.++.|+.+.+||++...+.+.+.+|.
T Consensus 104 ~vrtLtgh~~~~~-----------------------------sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 104 IVRTLTGHLLNIT-----------------------------SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred hhhhhhccccCcc-----------------------------eeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 888776 666777 89999999999999999999999999888999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
..+..+.|+|+|+++++|+.|.+++|||+.. ++....+..|.+.+..+.|+|..-.|++|+.|++|++||+++-..+.+
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 9999999999999999999999999999976 899999999999999999999999999999999999999998877777
Q ss_pred EeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 428 EIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 428 ~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.......|.+.+|+|+++.+++|..+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchh
Confidence 77777899999999999999888544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=206.10 Aligned_cols=235 Identities=18% Similarity=0.288 Sum_probs=190.4
Q ss_pred eEEEEEE--cCcEEEEEe--cCceEEEEeCCCCC---------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 191 QVSTLAV--KDKLLVAGG--FQGELICKHLDRPG---------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~--~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
+|.+++. ++..+++|| .||.+.+|+...-- ..........|.+.|+|+.| +|+|++ |++||.|+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~~-lAsGSDD~ 91 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGSY-LASGSDDR 91 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCCe-EeeccCcc
Confidence 5778877 899999999 99999999874311 11112344678999999999 999997 99999999
Q ss_pred eEEEEECCCC------------------eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc
Q 011924 258 GVRDFDMGKY------------------QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK 318 (475)
Q Consensus 258 ~v~iwd~~~~------------------~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~ 318 (475)
.|.||..... +.+..+. |...|. .++|+|++.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-----------------------------Dv~Wsp~~~ 142 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-----------------------------DVNWSPDDS 142 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-----------------------------eeccCCCcc
Confidence 9999987630 1222222 444555 999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC------Cc
Q 011924 319 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL------GA 392 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~------~~ 392 (475)
+|++++.|++|.||+.++.+.+.++.+|.+.|-.+.|.|-|+|||+-+.|++|+||.+.. ....+.+..+- .-
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTF 221 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999865 55666665432 35
Q ss_pred eEEEEEccCCCEEEEEcC----CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC-------------CC----eEEEEE
Q 011924 393 IRSIRYTSDGRYMATAEP----ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-------------TE----SLFIGV 451 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd-------------g~----~l~~~~ 451 (475)
.+.+.|||||.+|+++-. -..+.|.+-.+.+.-..+.+|.+++.++.|+|. .. .+|+|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 678999999999998743 347999997666667788999999999999991 11 578899
Q ss_pred ecCCcce
Q 011924 452 WDRTYGS 458 (475)
Q Consensus 452 ~D~~~~~ 458 (475)
.|+++..
T Consensus 302 qDrSlSV 308 (942)
T KOG0973|consen 302 QDRSLSV 308 (942)
T ss_pred CCccEEE
Confidence 9988743
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=188.94 Aligned_cols=233 Identities=17% Similarity=0.194 Sum_probs=187.6
Q ss_pred eEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEE
Q 011924 136 LVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (475)
Q Consensus 136 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~ 212 (475)
+.|+++...+... .+..+.+|+..++.....+... .+..+++.+| +|..+|+|+.|+++.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-----------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-----------------LGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccC-----------------cCCCcceeEEccCCceeEecCCCCcEE
Confidence 4588888887775 3466889999888765443221 1235677777 999999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~ 292 (475)
.|+++.+... .-..-....|..+++ +++|++ +++...|..|++++.++...........++.
T Consensus 338 ~wdlDgn~~~---~W~gvr~~~v~dlai--t~Dgk~-vl~v~~d~~i~l~~~e~~~dr~lise~~~it------------ 399 (519)
T KOG0293|consen 338 MWDLDGNILG---NWEGVRDPKVHDLAI--TYDGKY-VLLVTVDKKIRLYNREARVDRGLISEEQPIT------------ 399 (519)
T ss_pred EecCCcchhh---cccccccceeEEEEE--cCCCcE-EEEEecccceeeechhhhhhhccccccCcee------------
Confidence 9999864422 111222345888999 999998 5555589999999998876666666677888
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC--eEEEEEec-CCCEEEEEeCCC
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF--SFASAWHP-NGVTFATGNQDK 369 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~--v~~~~~sp-~g~~l~t~s~dg 369 (475)
+.++|.+|+++++.-.+..+++||+...+.++.+.||... +-.-||.- +..++|+||.|+
T Consensus 400 -----------------s~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 400 -----------------SFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred -----------------EEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 9999999999999999999999999988999999998753 44446654 668999999999
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccC-CCEEEEEcCCCeEEEEECCC
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-g~~la~~~~dg~i~iwd~~~ 421 (475)
.|+||+.++ ++++.++.||...|.+++|+|. -.++|+|+.||+|+||-...
T Consensus 463 kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 463 KVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999987 8999999999999999999995 46899999999999998653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=188.07 Aligned_cols=198 Identities=16% Similarity=0.242 Sum_probs=166.5
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCc----eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
-..|+| ....|++|+.+++|++||+..... ......+.+|.+.|+.++| ++-...+|++++.|+.+.|||+
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~--h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW--HPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhc--cccchhhheeecCCCeEEEEEc
Confidence 345777 667899999999999999976543 3345677899999999999 7877778999999999999999
Q ss_pred CC--Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC-ce
Q 011924 265 GK--YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-KT 339 (475)
Q Consensus 265 ~~--~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~-~~ 339 (475)
++ .+...... |..+++ |++|+| ++.+||+|+.|++|.+||+|.. ++
T Consensus 258 R~~~~~~~~~~~ah~~~vn-----------------------------~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~ 308 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVN-----------------------------CVAFNPFNEFILATGSADKTVALWDLRNLNKP 308 (422)
T ss_pred CCCCCCCcccccccCCcee-----------------------------EEEeCCCCCceEEeccCCCcEEEeechhcccC
Confidence 95 34434443 788999 999999 7888999999999999999954 57
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc-------------eEEEEecCCCceEEEEEccCCC-E
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-------------SVAVLKGNLGAIRSIRYTSDGR-Y 404 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~-------------~~~~~~~~~~~v~~l~~spdg~-~ 404 (475)
+.++.+|.+.|+++.|+| ....||+++.|+.+.|||+...+. ++..-.||...|..+.|+|+.. .
T Consensus 309 lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 309 LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE
Confidence 889999999999999999 668899999999999999964332 3466678999999999999875 5
Q ss_pred EEEEcCCCeEEEEECC
Q 011924 405 MATAEPADFVHVYDVK 420 (475)
Q Consensus 405 la~~~~dg~i~iwd~~ 420 (475)
|++++.|+.++||.+.
T Consensus 389 I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 389 IASVAEDNILQIWQMA 404 (422)
T ss_pred EEEecCCceEEEeecc
Confidence 6778899999999976
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=179.19 Aligned_cols=260 Identities=19% Similarity=0.216 Sum_probs=188.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc--eEEEe--eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV--SFCSR--TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~--~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|++|+| +|+.|++++.|+.|++|+++.-.. ..|.+ +..+| -+.+.| +|+.+.+++++-+..++++|.
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~F--apDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVF--APDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEE--CCCcceEEEEEccCCEEEEEE
Confidence 47999999 999999999999999999875221 11222 22233 466777 999998788887888999998
Q ss_pred CCC---Ceeeeeee----------cccc---EEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCC
Q 011924 264 MGK---YQLSKHFR----------FPWP---VNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDG 317 (475)
Q Consensus 264 ~~~---~~~~~~~~----------~~~~---v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g 317 (475)
+.. |....++. +.-+ +-...++..|+ .+.+|++. |+.+.++. .-+..++||+|
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC
Confidence 743 22221111 1111 11233344443 57899999 77776655 34578899999
Q ss_pred cEEEEEeCCCcEEEEECC---CC-----ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---C---ceE
Q 011924 318 KLLIIVGDNPDGLLVDSM---TG-----KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---S---ESV 383 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~---~~-----~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~---~---~~~ 383 (475)
+++++++--..+++|.+- .| +.+..|+||+..|..++|+|++..++|.|.||++||||+.-. + ..+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 999999999999999864 23 245678999999999999999999999999999999998521 1 112
Q ss_pred EEE----ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-ccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 384 AVL----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 384 ~~~----~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++. ....+....+..+|+|+.||.+... .+++|..++|+....+. .|.+.|++|+|+|+|+++++++ |+.+.
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vr 397 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVR 397 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeee
Confidence 221 1222334489999999999887654 69999999987665554 4888999999999999999876 44443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=194.23 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=199.2
Q ss_pred ceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEE
Q 011924 134 RNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELI 212 (475)
Q Consensus 134 r~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~ 212 (475)
..+.|+..+..|.+ ..++.|.+|+..+.+....+... +...|.+++|++..+.+|+.+|.|.
T Consensus 221 tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-----------------h~~rvg~laW~~~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 221 TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-----------------HASRVGSLAWNSSVLSSGSRDGKIL 283 (484)
T ss_pred EEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-----------------cCceeEEEeccCceEEEecCCCcEE
Confidence 44457777777766 46788999998776655543321 4458999999999999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLC 291 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~ 291 (475)
.+|++...... ....+|...|..+.| ++++.. +++|++|+.+.|||.....++..+. |...|.
T Consensus 284 ~~dvR~~~~~~--~~~~~H~qeVCgLkw--s~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK----------- 347 (484)
T KOG0305|consen 284 NHDVRISQHVV--STLQGHRQEVCGLKW--SPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK----------- 347 (484)
T ss_pred EEEEecchhhh--hhhhcccceeeeeEE--CCCCCe-eccCCCccceEeccCCCccccEEEeccceeee-----------
Confidence 99998776553 247789999999999 999986 9999999999999997666666655 899999
Q ss_pred EEeecccceEEEEeeeeeeEEECC-CCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe--
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-- 366 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-- 366 (475)
.++|+| ...+||+|+ .|+.|++||..+|+.+..+. -...|.++.|+|..+.|+++.
T Consensus 348 ------------------A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 348 ------------------ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred ------------------EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence 999999 888999975 79999999999999988876 467899999999887777653
Q ss_pred CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
.+..|.||+..+ .+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999977 7889999999999999999999999999999999999998764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=190.92 Aligned_cols=267 Identities=16% Similarity=0.202 Sum_probs=213.6
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccc-eeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQ-TQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
.+....+||+...+.|++|+....... .|-..+..++. ..|.+... +|+.|++||.-.++.||
T Consensus 427 IS~~trhVyTgGkgcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 427 ISNPTRHVYTGGKGCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ecCCcceeEecCCCeEEEeeccCCCCC--------------CccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 345557899999999999996432111 11111222221 23444333 99999999999999999
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v 293 (475)
|+..+.......+ ........++++ +|+.+. ++++..||.|.|||+.....++.|+ |...+.
T Consensus 493 DLAapTprikael-tssapaCyALa~--spDakv-cFsccsdGnI~vwDLhnq~~VrqfqGhtDGas------------- 555 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL-TSSAPACYALAI--SPDAKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS------------- 555 (705)
T ss_pred eccCCCcchhhhc-CCcchhhhhhhc--CCccce-eeeeccCCcEEEEEcccceeeecccCCCCCce-------------
Confidence 9987765432222 223345667777 999986 7777799999999999999999998 888888
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
|+.++++|..|-+|+-|.+|+.||+++++.++... ....|+++-..|++.++|.|-.++.|.|
T Consensus 556 ----------------cIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 556 ----------------CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred ----------------eEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEE
Confidence 99999999999999999999999999998776544 4678999999999999999999999988
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
-... +.....+.-|.+-|.++.|.+-|+++++.+.|+.+..|.+.-|..+.+.. ....|.++..|-|.++|++|+.|
T Consensus 619 lh~s--kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 619 LHTS--KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred EecC--CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 8875 45566777788999999999999999999999999999998887776654 45789999999999999999998
Q ss_pred CC
Q 011924 454 RT 455 (475)
Q Consensus 454 ~~ 455 (475)
..
T Consensus 696 kk 697 (705)
T KOG0639|consen 696 KK 697 (705)
T ss_pred cc
Confidence 54
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=189.87 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=205.7
Q ss_pred eecccceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEE-EEE---cCcEEE
Q 011924 129 LHFQLRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST-LAV---KDKLLV 203 (475)
Q Consensus 129 ~h~~lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~---~~~~lv 203 (475)
.|.+-...+..++.-.+...+ ++++.+|....+.-.+...+.+|. + -|.+ +++ ++..|+
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---------------g-~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---------------G-FIANSICYAESDKGRLV 75 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCc---------------c-eeeccceeccccCcceE
Confidence 344332233344444344444 688999987665544433333221 1 1222 444 667899
Q ss_pred EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEec
Q 011924 204 AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVS 282 (475)
Q Consensus 204 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s 282 (475)
+|+.|+.|.+|.+....+. .++.+|.+.|+++.. ..++. +++||+|.++++|-.. ++...+. |..+|-
T Consensus 76 ~g~~D~~i~v~~~~~~~P~---~~LkgH~snVC~ls~--~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVW-- 144 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPL---YTLKGHKSNVCSLSI--GEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVW-- 144 (745)
T ss_pred eecccceEEEEecCCCCch---hhhhccccceeeeec--CCcCc--eEecccccceEEecch--hhhcccCCcchhee--
Confidence 9999999999999877666 678899999999987 55553 8999999999999873 4444444 777787
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEE
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 362 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 362 (475)
+++.-|.+ .+++|+.|..|++|.- ++.+.+|.||.+.|+.+++-|++ .|
T Consensus 145 ---------------------------Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~f 193 (745)
T KOG0301|consen 145 ---------------------------AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HF 193 (745)
T ss_pred ---------------------------eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-Ce
Confidence 88888877 8899999999999974 88899999999999999999875 58
Q ss_pred EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
++++.||.|++|++ . +..+..+.+|..-|.++...+++..+++++.|++++||+.. .+...+.-....|+++.+-+
T Consensus 194 lScsNDg~Ir~w~~-~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDL-D-GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred EeecCCceEEEEec-c-CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence 89999999999999 3 78999999999999999988888899999999999999966 44444443334899999988
Q ss_pred CCCeEEEEEecCCcceE
Q 011924 443 DTESLFIGVWDRTYGSL 459 (475)
Q Consensus 443 dg~~l~~~~~D~~~~~l 459 (475)
+|. |++|++||.++.+
T Consensus 270 NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 270 NGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCC-EEEeccCceEEEE
Confidence 875 7789999877543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=194.40 Aligned_cols=229 Identities=16% Similarity=0.226 Sum_probs=187.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..+.+++ +|.+|++++.+|.|++|+....... ..+...+...|.+++. .+. .|++|+.+++|.+|.+..++
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~~v~~ia~----~s~-~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGELVSSIAC----YSN-HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCceeEEEee----ccc-ceEEeeccceEEEeeCCCCC
Confidence 4556666 8999999999999999997655211 1222225666777765 333 49999999999999998876
Q ss_pred eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
.-..+. +..+++ +++|+.+|+++|.|++|-.|++.++.+......+.+|.
T Consensus 88 ~~~iL~Rftlp~r-----------------------------~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 88 EDTILARFTLPIR-----------------------------DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred ccceeeeeeccce-----------------------------EEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence 553333 566778 99999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC--------CCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--------LGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~--------~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
++|.++.|+|++++||+.+-||+|+|||+.+ +.+..++.+- ...+..++|+|+|..|+..+.|+.|.+|+.
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence 9999999999999999999999999999976 6655555431 345678999999888888889999999999
Q ss_pred CCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.+......+.. +...+..+.|||+|+|||++.-|+.+
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 88877776664 33459999999999999999988765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-20 Score=174.19 Aligned_cols=266 Identities=16% Similarity=0.156 Sum_probs=191.2
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
.++.+..|+..+++....+... ..+.++++ +++.+ ++++.++.|++|++......
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~-------------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--- 66 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG-------------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--- 66 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC-------------------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE---
Confidence 4688999998777654443321 01234555 67665 56778899999998865433
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEE-------EEEEee
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIIL-------LCRLLN 295 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~-------~~~v~d 295 (475)
.....+.. +..+.+ +|+++.++++++.++.|++||+.+.+.+..+. .+..+.++|++..++ .+..||
T Consensus 67 ~~~~~~~~-~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 67 GTLPSGPD-PELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred EeccCCCC-ccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 22222222 456667 99999766677778999999999888777665 245677899988875 245678
Q ss_pred cccceEEEEe---eeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeecCC-----C--CeEEEEEecCCCEEEE
Q 011924 296 FMTEKVIICL---LCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHL-----D--FSFASAWHPNGVTFAT 364 (475)
Q Consensus 296 ~~~~~~~~~~---~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~h~-----~--~v~~~~~sp~g~~l~t 364 (475)
..+++..... ....+++|+|+|++|++++ .++.|++||+.+++.+..+..+. . ....++|+|+++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 144 TKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 8776654332 2445789999999886554 58999999999998877665321 1 2346889999998655
Q ss_pred E-eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 365 G-NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 365 ~-s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+ ..++++.+||+++ ++.+..+. +...+.+++|+|+|++|++++ .++.|+|||+.+++.+..+.. ...+.+++|+|
T Consensus 224 ~~~~~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 224 ALGPANRVAVVDAKT-YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EcCCCCeEEEEECCC-CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 4 4567899999976 56555443 344788999999999998864 589999999999988887764 46678998876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-20 Score=175.74 Aligned_cols=248 Identities=16% Similarity=0.172 Sum_probs=182.9
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---c
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---F 275 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~ 275 (475)
+.++++++.+|.|++|++.+.+.. ..+..+. .+..+.| +|+|+.++++++.++.|++||+.+++....+. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~---~~~~~~~-~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT---RTFPVGQ-RPRGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE---EEEECCC-CCCceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence 357889999999999999765543 2333333 3567888 99998766778889999999999888776554 2
Q ss_pred cccEEeccCCceEE-------EEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCC-cEEEEECCCCceEEEee
Q 011924 276 PWPVNVSSSYCIIL-------LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLC 344 (475)
Q Consensus 276 ~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg-~i~iwd~~~~~~~~~l~ 344 (475)
+..+.+++++..+. .+.+||+.+++.+.... .+.+++|+|+|+++++++.++ .+.+||..+++.+..+.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 34566888887663 58899998876655443 457899999999999988765 46778998887766554
Q ss_pred cCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCCceEEEEecCC-------CceEEEEEccCCCEEEEE-cCCCeEE
Q 011924 345 GHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNL-------GAIRSIRYTSDGRYMATA-EPADFVH 415 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~~~~~~~~~~~-------~~v~~l~~spdg~~la~~-~~dg~i~ 415 (475)
. ...+.+++|+|++++|+++ ..++.|++||+++ ++.+..+..+. .....++|+|+|++++++ ..++.|.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 3346789999999988655 4689999999976 55555554221 123468899999986554 4567899
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe-cCC
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW-DRT 455 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~-D~~ 455 (475)
+||+.+++....+ .+...+.+++|+|+|++|+++.. +++
T Consensus 233 v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 233 VVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSND 272 (300)
T ss_pred EEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCe
Confidence 9999988766544 34567899999999999998743 444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=189.58 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=186.6
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecC--CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD--DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
+.-|.++.+ ..+.+++|| .|.|+|||+...+.......+.. ....+..+.+ .|+|+. |++|+.-.++.|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL--~pdgrt-LivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL--LPDGRT-LIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEe--cCCCce-EEeccccceeeeeec
Confidence 345666666 667788886 67899999987765433333222 3345667777 899997 888888999999999
Q ss_pred CCCeee--eeeeccc-cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 265 GKYQLS--KHFRFPW-PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~~~~--~~~~~~~-~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
...... ..+.... ... .+++|||.++.+++..||.|.|||+++...++
T Consensus 495 AapTprikaeltssapaCy-----------------------------ALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACY-----------------------------ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred cCCCcchhhhcCCcchhhh-----------------------------hhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 764432 2333222 222 78899999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.|+||++.+.||.++++|..|.||+-|.+||-||+|. ++.+.... ..+.|.++.++|.+.+||+|-.++.|.|....
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre-grqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s- 622 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE-GRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS- 622 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhhh-hhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-
Confidence 9999999999999999999999999999999999997 44333322 34679999999999999999999999998854
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....++..|..-|.++.|++.|+++++.+.|.-++
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLn 658 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 658 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchhhhh
Confidence 556778888999999999999999999999886554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-20 Score=172.06 Aligned_cols=285 Identities=14% Similarity=0.146 Sum_probs=199.1
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
.+.+.+...+.+..|....+...+.... .+......|+||+| .+.-+++|..+|.|.||+.....
T Consensus 213 ~nliit~Gk~H~~Fw~~~~~~l~k~~~~--------------fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 213 PNLIITCGKGHLYFWTLRGGSLVKRQGI--------------FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred CcEEEEeCCceEEEEEccCCceEEEeec--------------cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce
Confidence 3444455556777787666655443222 12223367999999 66778999999999999986544
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEE-eccCCceE--EE----
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVN-VSSSYCII--LL---- 290 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~-~s~~~~~l--~~---- 290 (475)
.. +....|.+.|.++++ -.+|. |++|+.|+.|..|| ...+..+... ..++++ ..+....+ ++
T Consensus 279 ~~---k~~~aH~ggv~~L~~--lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 279 IS---KQVHAHDGGVFSLCM--LRDGT--LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EE---eEeeecCCceEEEEE--ecCcc--EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 33 333389999999999 78885 67799999999999 3333333332 222333 22222212 11
Q ss_pred EEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 011924 291 CRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
+-.-++..+-.+.... ..-.++.+|+..++++++.|+.+++|+ ..+++.+.. -.+++.|+.|+|.| .+|.|..
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeec
Confidence 1111222222221111 223789999999999999999999999 455554443 46789999999999 9999999
Q ss_pred CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEe-ccCCCeEEEEEcCCCC
Q 011924 368 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEI-DFFGEISGISFSPDTE 445 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~-~~~~~i~~l~fspdg~ 445 (475)
.|...+.|..+ ...+..-.. ..+++.++|+|+|.+||+|+.|+.|+||-+... ....... .+..+|+.+.||+|++
T Consensus 427 ~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 427 TGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ 504 (626)
T ss_pred cceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc
Confidence 99999999976 555554444 789999999999999999999999999998654 3333322 2447899999999999
Q ss_pred eEEEEEecC
Q 011924 446 SLFIGVWDR 454 (475)
Q Consensus 446 ~l~~~~~D~ 454 (475)
+|.+-+.|-
T Consensus 505 ~~~~~S~d~ 513 (626)
T KOG2106|consen 505 FLVSNSGDY 513 (626)
T ss_pred eEEeccCce
Confidence 999887764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=173.17 Aligned_cols=256 Identities=15% Similarity=0.236 Sum_probs=205.4
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEe------CCCCC
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKH------LDRPG 220 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~------~~~~~ 220 (475)
.+....+|+..++++. ....|| .+.|.++.| .+.++++++.|++-.||. +..+.
T Consensus 168 ADhTA~iWs~Esg~CL--~~Y~GH----------------~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 168 ADHTARIWSLESGACL--ATYTGH----------------TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNN 229 (481)
T ss_pred cccceeEEeeccccce--eeeccc----------------ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCC
Confidence 4678889998877543 333333 236899999 778899999999999997 21100
Q ss_pred -------------------------------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 221 -------------------------------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 221 -------------------------------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
.......+.+|.+.|.+..| -..|+. ++++|+|.+..+||++++.+
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW--L~gg~Q-~vTaSWDRTAnlwDVEtge~ 306 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW--LAGGQQ-MVTASWDRTANLWDVETGEV 306 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh--hcCcce-eeeeeccccceeeeeccCce
Confidence 00112234568888888888 667775 99999999999999999999
Q ss_pred eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEeecCC
Q 011924 270 SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHL 347 (475)
Q Consensus 270 ~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~ 347 (475)
+..+. |...++ .++-+|..+++++++.|.+.++||.+.. ..+..|+||.
T Consensus 307 v~~LtGHd~ELt-----------------------------HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 307 VNILTGHDSELT-----------------------------HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred eccccCcchhcc-----------------------------ccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 99888 888888 8899999999999999999999999833 4578899999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE-
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE- 426 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~- 426 (475)
+.|+++.|.-+. .+++|+.|.+|+|||+++...++.++.. .+++..++.+..++++|.--.+..|++||+... .+.
T Consensus 358 dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaR 434 (481)
T KOG0300|consen 358 DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLAR 434 (481)
T ss_pred cceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCC-cccc
Confidence 999999998764 5899999999999999998999999986 458899999998899999988899999998643 332
Q ss_pred ----EEeccCCCeEEEEEcCCC--CeEEEEEecCCcc
Q 011924 427 ----QEIDFFGEISGISFSPDT--ESLFIGVWDRTYG 457 (475)
Q Consensus 427 ----~~~~~~~~i~~l~fspdg--~~l~~~~~D~~~~ 457 (475)
.-.+|...|.|++|..+- .-|++++.|+.+.
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred CCcccccccceeeeeeeccccCcccccccccccceee
Confidence 234688899999998653 4578888887654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-20 Score=158.09 Aligned_cols=239 Identities=14% Similarity=0.184 Sum_probs=192.2
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceE--EEeeecCCCCceeEEEEEeCCC-CCeEEEEE-eCCCeEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPS-GAVHFTAS-NNDCGVRD 261 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~-s~dg~v~i 261 (475)
+...|.|.+| .|.+|++|+.|..|++..++...... .-..+.-|.+.|..++|.-.|. |..+|+++ ..|+.|++
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 3458999999 89999999999999998775433111 0123445888999999975553 33445554 46788999
Q ss_pred EECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 262 FDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
-|..+++....+. |.+-+. ++ ++-+|-++++|+.|.+|+.||++-..++
T Consensus 168 tdc~~g~~~~a~sghtghil-----------------------------al-yswn~~m~~sgsqdktirfwdlrv~~~v 217 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHIL-----------------------------AL-YSWNGAMFASGSQDKTIRFWDLRVNSCV 217 (350)
T ss_pred eecCCCCcceeecCCcccEE-----------------------------EE-EEecCcEEEccCCCceEEEEeeecccee
Confidence 9999998887776 555554 22 3446889999999999999999988888
Q ss_pred EEeec-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 341 ASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 341 ~~l~~-------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
.++.. ....|.+++..|.|++|++|-.|..+.+||+|. +++++.+..|...|++++|||...+|++++.|..
T Consensus 218 ~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 218 NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccce
Confidence 87753 235789999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEECCCC----eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 414 VHVYDVKSG----YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 414 i~iwd~~~~----~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++-|++.. -.+.....|...+..+.|+|..-.+++.+.|.+..
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 999998642 23344556888999999999988888999998763
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=190.78 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=163.6
Q ss_pred eeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..|+.|+| +.++|++++.|.+|++|.+...... .+ ..|+..|+||+| +|....+|++|+-||.||||++...+
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL---~~-F~HndfVTcVaF--nPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL---KV-FSHNDFVTCVAF--NPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCccee---eE-EecCCeeEEEEe--cccCCCcEeecccccceEEeecCcCe
Confidence 47999999 8999999999999999998864433 33 358899999999 99887789999999999999999888
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec---
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--- 345 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--- 345 (475)
.+.-.....-|+ +++|.|+|+..++|+-+|.+++|++...+......-
T Consensus 444 Vv~W~Dl~~lIT-----------------------------Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 444 VVDWNDLRDLIT-----------------------------AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred eEeehhhhhhhe-----------------------------eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 877666667788 999999999999999999999999987776554421
Q ss_pred ------CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCC--CceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 346 ------HLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 346 ------h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
|. .|+.+.|.| +...+++.+.|..|||+|.+. ..++..+++.. ..-....|+.||++|++|+.|..|+|
T Consensus 495 ~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 495 NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 33 799999998 445677777899999999976 67888888744 23347789999999999999999999
Q ss_pred EECC
Q 011924 417 YDVK 420 (475)
Q Consensus 417 wd~~ 420 (475)
|+..
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9974
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=181.54 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=182.6
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEee------------------ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRT------------------TYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~------------------~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
.|++++.|+++-.|.|||++-........+ ..+|+..|-+++| +..-+.+|++||.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~--n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW--NRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh--ccccceeEEecCCCceE
Confidence 578999999999999999974332222111 2357777888888 77777789999999999
Q ss_pred EEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC
Q 011924 260 RDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
++||+.++++..++. |...|+ +++|+| ....|++|+.|+++.+.|.|..
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq-----------------------------~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQ-----------------------------TLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EEEEcCCCCcceehhhcCCcee-----------------------------EEEecCCCceEEEeccccceEEeeeccCc
Confidence 999999999999998 888999 999999 7788999999999999999842
Q ss_pred ceE-EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeE
Q 011924 338 KTI-ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFV 414 (475)
Q Consensus 338 ~~~-~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i 414 (475)
... ..++ ..+.|-.++|+| ....++++..||+|+-+|+|+.++++.+++.|.++|.++.+++.- .+|++++.++.|
T Consensus 320 ~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 320 SNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred cccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence 221 2222 356788999999 567888889999999999999999999999999999999998854 478999999999
Q ss_pred EEEECCCCeeEEEEecc---CCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 415 HVYDVKSGYEKEQEIDF---FGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~---~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
++|++....... ...| -+...|+++.|+-.++++.+.-..+..++.+..
T Consensus 399 klw~~~~~~~~~-v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 399 KLWKFDVDSPKS-VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEEeecCCCCcc-cccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999986543322 1222 256788889998766555443333444554443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=185.75 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=195.1
Q ss_pred cccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 186 GFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 186 ~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..+...|..+.| +...|++||.|..|++|++...+.. ...++.+..+.++.+.+ .++++. ++++++|+.+++|+
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLaGs~g~it~~d~--d~~~~~-~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLAGSLGNITSIDF--DSDNKH-VIAASNDKNLRLWN 247 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-hhhhhhccCCCcceeee--cCCCce-EEeecCCCceeeee
Confidence 345567888888 5589999999999999999866622 24667788889999999 888886 88888999999999
Q ss_pred CCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 264 MGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 264 ~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
+...+...++. |...|+ ++.|......+++|+.|.+|++||+....+..+
T Consensus 248 vd~~r~~~TLsGHtdkVt-----------------------------~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVT-----------------------------AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ccchhhhhhhccccccee-----------------------------eehhhccccceeeccccchhhhhhhhhhheecc
Confidence 99999888888 888999 889988777799999999999999998877766
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+- ....+..|+.+ ...+++|-.|++||+||++. ..++.....+. .|+++..+++|..|.+.+.|+++.+.|+++.
T Consensus 299 ~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred cc-ccccccceEec--ceeeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 54 34556777775 56789999999999999987 67777777654 8999999999999999999999999999987
Q ss_pred eeEEEEecc----CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 423 YEKEQEIDF----FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 423 ~~~~~~~~~----~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.....+... ....+.+.|||++.|+++|+.||.+.
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence 655554431 13588999999999999999999874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=182.61 Aligned_cols=237 Identities=15% Similarity=0.203 Sum_probs=193.1
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
.++.|.+||+ +.+.||.+-.+|.|-+|++... ......+..+.++.|.+++| ++.++ |++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W--~e~~R--LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAW--AEGGR--LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEE--ccCCe--EEeecCCceEEEEecc
Confidence 4457999999 7788999999999999999863 22223344456788999999 76653 8888899999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE--E
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA--S 342 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~ 342 (475)
+.+.+.... ..+++- +++.+|.+..+++|++||.++.++...++... .
T Consensus 99 ~lk~~~~~d~~gg~IW-----------------------------siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIW-----------------------------SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred cCceeEEecCCCccee-----------------------------EEEeCCccceEEeecCCceEEEEecCCceEEEEee
Confidence 988887776 566666 99999999999999999988888877776543 3
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--------CCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------NLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--------~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
|.-.++.+.+++|+|++..+++|+.||.|++||+.. +..++.... ...-|+++.|-.++ .|++|...|+|
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V 227 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTV 227 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceE
Confidence 344568999999999999999999999999999976 554442221 22346777777555 68999999999
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
.+||...|..+.....|.+.|.+++.++++.++++++.|+++-.+-
T Consensus 228 ~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 228 TFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred EEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 9999999999999999999999999999999999999998764433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=181.00 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=184.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~- 266 (475)
.+|.|++. .|.+|+.|+..|.|++|.+.++... .++..|=..|+++.| +-||.. |++||+||.|.+|.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITcL~f--s~dgs~-iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITCLKF--SDDGSH-IITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeEEEE--eCCCcE-EEecCCCccEEEEEEEee
Confidence 47889988 7888888889999999999987755 555788889999999 999985 99999999999998732
Q ss_pred --------Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECC
Q 011924 267 --------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 267 --------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~ 335 (475)
-+..+.|. |.-+|+ .+...+ ...+|++++.|.++++||+.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsIT-----------------------------Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSIT-----------------------------DLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred cccccCCCccceeeeccCcceeE-----------------------------EEEecCCCccceEEEecCCceEEEEEec
Confidence 12333444 555555 666554 45689999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---------------ceEEEEecCCC--ceEEEEE
Q 011924 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---------------ESVAVLKGNLG--AIRSIRY 398 (475)
Q Consensus 336 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---------------~~~~~~~~~~~--~v~~l~~ 398 (475)
.|..+.++. ....+.+++.+|-++.++.|+.+|.|.+.++.+.. ..+..+.+|.+ +|+|++.
T Consensus 207 ~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 207 LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 999888877 56789999999999999999999999998875432 24566778887 9999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEE
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 448 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~ 448 (475)
+-||..|++|+.||.|.|||+.+..+++++....|+|+.+.+.|--+.++
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 99999999999999999999999888888776789999999866543333
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-22 Score=175.12 Aligned_cols=211 Identities=18% Similarity=0.241 Sum_probs=170.3
Q ss_pred eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC------------------eeeeeee-ccccEEec
Q 011924 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY------------------QLSKHFR-FPWPVNVS 282 (475)
Q Consensus 222 ~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~------------------~~~~~~~-~~~~v~~s 282 (475)
.+.......|++++.+-+| +|+|.. +++|+.|..|+|+|++.. -.++++- |..+|+
T Consensus 102 ~yEt~ylt~HK~~cR~aaf--s~DG~l-vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn-- 176 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAF--SPDGSL-VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN-- 176 (430)
T ss_pred ccceEEEeecccceeeeee--CCCCcE-EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc--
Confidence 3345666789999999999 999985 999999999999998731 1223332 555666
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE---EEeecCCCCeEEEEEecCC
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI---ASLCGHLDFSFASAWHPNG 359 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~l~~h~~~v~~~~~sp~g 359 (475)
++.|+|....|++++.|++|+++|....... ..++ ...+|.++.|||.|
T Consensus 177 ---------------------------~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsG 228 (430)
T KOG0640|consen 177 ---------------------------DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSG 228 (430)
T ss_pred ---------------------------ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCC
Confidence 9999999999999999999999998744322 2232 45689999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceEEEE---ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cC-CC
Q 011924 360 VTFATGNQDKTCRIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FF-GE 434 (475)
Q Consensus 360 ~~l~t~s~dg~v~iwd~~~~~~~~~~~---~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~ 434 (475)
.+|+.|.+-.++++||+.+ .++.... ..|.++|+++.+++.|++.++|+.||.|+|||--+++++.++.. |. .+
T Consensus 229 efllvgTdHp~~rlYdv~T-~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred ceEEEecCCCceeEEeccc-eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 9999999999999999976 4544333 34778999999999999999999999999999888888887764 54 47
Q ss_pred eEEEEEcCCCCeEEEEEecCCcceEEEEEeecc
Q 011924 435 ISGISFSPDTESLFIGVWDRTYGSLLEYGRCRN 467 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~ 467 (475)
|.+..|+.+|+||++.+.|..+ .|++...++.
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~v-kLWEi~t~R~ 339 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTV-KLWEISTGRM 339 (430)
T ss_pred eeeEEEccCCeEEeecCCccee-eeeeecCCce
Confidence 9999999999999999999766 5556554443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=170.21 Aligned_cols=285 Identities=18% Similarity=0.194 Sum_probs=205.9
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---------cCcEE
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---------KDKLL 202 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---------~~~~l 202 (475)
++.+-|++++.-|+.. .++.+..|+.-..-...-. .+ ..+..+++ .++...+..|...+| +.+++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~--~~-~~~~~~~~--~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--DG-PLNFSKHL--SYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC--CC-ccccccce--eEEeccCCEEEEEEeeeccccCCCcccee
Confidence 4677799999887775 5677888875322111100 00 11111111 133334456777777 46788
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CCCeeeee--------e
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKYQLSKH--------F 273 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~~~~~~~--------~ 273 (475)
++.+.+.-|++||.-+++.........+......+.++.|+|+|.. |++| ...+|++||+ +.|..... +
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 8899999999999987765543333222222223333344999997 6666 7789999999 44432221 1
Q ss_pred eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q 011924 274 RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 274 ~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
...+.+. |++|+| +.+.+++++....+-||.-..+.++..+-+|.+.|+.
T Consensus 205 gq~giis-----------------------------c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 205 GQKGIIS-----------------------------CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH 255 (406)
T ss_pred cccceee-----------------------------eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence 1234444 999999 6679999998888888888888999999999999999
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecCCC-ceEEE--EEccCCCEEEEEcCCCeEEEEECCC-CeeEEE
Q 011924 353 SAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLG-AIRSI--RYTSDGRYMATAEPADFVHVYDVKS-GYEKEQ 427 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l--~~spdg~~la~~~~dg~i~iwd~~~-~~~~~~ 427 (475)
++|.++|+.|.+|+. |-.|..||+|....++..+..|.+ .-..| ...|.|++||+|+.+|.|++||+++ |..+..
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 999999999999986 678999999998888888887765 22334 4478999999999999999999998 777778
Q ss_pred EeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 428 EIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 428 ~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+..+..-+.+++++|--..+++++..
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccccccceecCcccceeeeccCc
Confidence 88888899999999998888877644
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=178.90 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=201.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCce-EEE-------------eee-cCCCCceeEEEEEeCCCCCeEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-FCS-------------RTT-YDDNAITNAVEIYGSPSGAVHF 250 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~-------------~~~-~~~~~~v~~l~~~~s~~g~~~l 250 (475)
++.+|++|++ ++.+.++++.+|+|.=|++.+.... ... ... ..|...+.++++ |++|++ |
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dgky-l 217 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDGKY-L 217 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCCcE-E
Confidence 3446777777 8889999999999999998765522 100 111 267788889999 999997 9
Q ss_pred EEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE
Q 011924 251 TASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG 329 (475)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i 329 (475)
++|+.|..|.||+..+.+.+..+. |...|. +++|......|++++.|+.+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-----------------------------~L~fr~gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-----------------------------SLAFRKGTSELYSASADRSV 268 (479)
T ss_pred EecCCCceEEEecCcccchhhccccccccee-----------------------------eeeeecCccceeeeecCCce
Confidence 999999999999999999998877 888888 99999988899999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
++|++.....+.++.||++.|.++.-..-++.+-+|+.|+++++|++. ......+.++.+.+-|++|-. ..++++|+
T Consensus 269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In-~~HfvsGS 345 (479)
T KOG0299|consen 269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFIN-DEHFVSGS 345 (479)
T ss_pred EEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEec-ccceeecc
Confidence 999999988999999999999999888888888888899999999994 455667788888999999975 45899999
Q ss_pred CCCeEEEEECCCCeeEEEEec-cC-----------CCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 410 PADFVHVYDVKSGYEKEQEID-FF-----------GEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~~-~~-----------~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
.+|.|.+|++.+.+++..... |. ..|++++..|....+++|+++|.++ |+....
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vr-LW~i~~ 411 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVR-LWKIED 411 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceE-EEEecC
Confidence 999999999988877766542 21 2789999999999999999999884 444433
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=172.16 Aligned_cols=251 Identities=17% Similarity=0.161 Sum_probs=189.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC----
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM---- 264 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~---- 264 (475)
.|..++. ....+.+++.|.+-++|.++.. .|...+.+|.+.|++|.| ++.+. +++++|.|++..||..
T Consensus 150 GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikf--h~s~~-L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 150 GIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKF--HNSGL-LLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEe--ccccc-eEEEccCCcchHHHHHhhcC
Confidence 4666666 4557888999999999999874 455788899999999999 88887 5999999999999962
Q ss_pred CCCeeeee--------ee-ccccEE-----eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 265 GKYQLSKH--------FR-FPWPVN-----VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 265 ~~~~~~~~--------~~-~~~~v~-----~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+..+.... .. +..... ...++..|- +-+..+ ..+...|.+..|-..|+.+++++.|.+..
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-vPl~~l-----tgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-VPLMRL-----TGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceee-eeeeee-----eccccceEehhhhcCcceeeeeeccccce
Confidence 11111000 00 000000 011111110 000000 00111344777888999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+||+++|.++..|.||....+.++-||..+++++++.|.+.++||+|..-..+..+++|...|+++.|..+. .+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 999999999999999999999999999999999999999999999997778899999999999999998765 5789999
Q ss_pred CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 411 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
|.+|+|||+++.......+....++..++.+..++.|+.--.++
T Consensus 377 DrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred CceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc
Confidence 99999999998766555555678888888888777777654443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=165.30 Aligned_cols=226 Identities=19% Similarity=0.204 Sum_probs=173.4
Q ss_pred EecCCeEEEEecCCCCc-eEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEecCceEEEEeCCCCCc
Q 011924 147 LMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 147 ~~~~~~v~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
..+|..|+++...++.. ..+..+.|| ..||.-++| -|.+|+++++||+|+||.-..+..
T Consensus 29 csSD~tVkIf~v~~n~~s~ll~~L~Gh----------------~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQSKLLAELTGH----------------SGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred ecCCccEEEEEEcCCCCceeeeEecCC----------------CCCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence 35678888888766554 444555554 246788888 689999999999999999776542
Q ss_pred eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-e-eee--eeeccccEEeccCCceEEEEEEeecc
Q 011924 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-Q-LSK--HFRFPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 222 ~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-~-~~~--~~~~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
. .......|.+.|++|+|.++.-|- +|++++.||.|.|.+.+.. . ... .+.|.-.|+
T Consensus 93 ~-k~~e~~~h~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn----------------- 153 (299)
T KOG1332|consen 93 T-KAYEHAAHSASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN----------------- 153 (299)
T ss_pred h-hhhhhhhhcccceeecccccccce-EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc-----------------
Confidence 2 123445789999999995554554 5889999999999988653 1 111 222666777
Q ss_pred cceEEEEeeeeeeEEECCC---C-----------cEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEEecCC--
Q 011924 298 TEKVIICLLCLQHSSQSPD---G-----------KLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNG-- 359 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~---g-----------~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~v~~~~~sp~g-- 359 (475)
+++|.|. | +.|++|+.|..|+||+...+. .-.+|.+|.+.|+.++|.|.-
T Consensus 154 ------------sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 154 ------------SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred ------------eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC
Confidence 8888885 4 679999999999999988763 345689999999999999943
Q ss_pred --CEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 360 --VTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 360 --~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.+||++++||+|.||-.+.... ....+......+..+.||+.|.+|++++.|+.|.+|--
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 5899999999999998864222 23334445678999999999999999999999999973
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=191.90 Aligned_cols=185 Identities=15% Similarity=0.238 Sum_probs=158.5
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
+..|.| +.....+|++++..|.|.+||+.. .+++..|. |...++ +
T Consensus 90 ~~DVkW--~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-----------------------------~ 138 (839)
T KOG0269|consen 90 AADVKW--GQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-----------------------------K 138 (839)
T ss_pred hhhccc--ccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcccee-----------------------------e
Confidence 445666 554455799999999999999977 44555666 888999 9
Q ss_pred EEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 311 SSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 311 ~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
+.|++ ...+|++|++||.|++||++..+...++.+....|+.++|+| .+.+|+++...|.+++||+|.+.++...+.+
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 99998 677889999999999999999998889998889999999999 7899999999999999999999999999999
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEE
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~ 450 (475)
|.++|.++.|+|++.+||+|+.|++|+|||+.++...... +.-..+|..+.|-|...+.++.
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh
Confidence 9999999999999999999999999999998865433322 2345789999999987765533
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=167.14 Aligned_cols=266 Identities=15% Similarity=0.142 Sum_probs=202.9
Q ss_pred CCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 179 HPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 179 ~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
+|..+..++....-.|+.| .|.+|++|..+|.|.+||+.+-+.. +++..|-.+|++++| |++|+. |+++|.|
T Consensus 13 ~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~W--S~dgr~-LltsS~D 86 (405)
T KOG1273|consen 13 YPEELTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCW--SRDGRK-LLTSSRD 86 (405)
T ss_pred ChHhhceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEe--cCCCCE-eeeecCC
Confidence 4444444444444566667 8999999999999999999886654 778899999999999 999997 9999999
Q ss_pred CeEEEEECCCCeeeeeeeccccEE---eccCCceEEEEEEeecc---------cceEEEEee------eeeeEEECCCCc
Q 011924 257 CGVRDFDMGKYQLSKHFRFPWPVN---VSSSYCIILLCRLLNFM---------TEKVIICLL------CLQHSSQSPDGK 318 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~~~~v~---~s~~~~~l~~~~v~d~~---------~~~~~~~~~------~i~~~~~sp~g~ 318 (475)
..|.+||+..+.++..+.++.+|. ++|-....+.+.+++-. ....++... ...+..|.+.|+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 999999999999999998776665 56655555433333222 111111110 223556889999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---c-----eEEEEec-
Q 011924 319 LLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---E-----SVAVLKG- 388 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~-----~~~~~~~- 388 (475)
++++|...|.+.+++..+.++++.++-.. ..|..+.++-.|+.|+.-+.|+.||.|+++..- + +.+.++.
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 99999999999999999999998887655 778999999999999999999999999986311 1 1111111
Q ss_pred -CCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCeeEEEEeccCC-CeEEEEEcCCCCeEEEE
Q 011924 389 -NLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIG 450 (475)
Q Consensus 389 -~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~fspdg~~l~~~ 450 (475)
+..+-.+++||.+|.|++.++. ...++||....|..++.+.+..| ....+.|+|-...|++-
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 1224457899999999988774 46799999999999999988774 57889999987777665
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=182.59 Aligned_cols=263 Identities=15% Similarity=0.140 Sum_probs=188.1
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEe----C------CCCCeEEEEEeCCCeE
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG----S------PSGAVHFTASNNDCGV 259 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~----s------~~g~~~l~s~s~dg~v 259 (475)
..++.| ....|...-.|..|+|||++.....-......-|..-|+.|..+. + |.+ .|++++.|++|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TI 404 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTI 404 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc--ceeEecCCCcE
Confidence 445556 456788888999999999987654332334445677777776642 1 223 38999999999
Q ss_pred EEEECCCCeeeeeee----ccccEE---eccCCceE--EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 260 RDFDMGKYQLSKHFR----FPWPVN---VSSSYCII--LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~----~~~~v~---~s~~~~~l--~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
|+|++..+..-..+. ....+. ...+.+.+ ...-++|...-........+.++++||+|++||+|..-|+++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999997632211111 000000 00011111 112233332222222233567999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEE----------
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR---------- 397 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~---------- 397 (475)
||++..-..+..++.|...|.|+.++- ..++||+++.|..|.|||+.....++.++.+|...|+++.
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 999999888889999999999999985 4589999999999999998654555556655555555444
Q ss_pred ---------------------------------------EccCCCEEEEEcCCCeEEEEECCCCeeEEEEec---cCCCe
Q 011924 398 ---------------------------------------YTSDGRYMATAEPADFVHVYDVKSGYEKEQEID---FFGEI 435 (475)
Q Consensus 398 ---------------------------------------~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i 435 (475)
..|..+++++++.|..|+|||+.+|+..+.+.+ |.|..
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 445666788999999999999999999988875 66889
Q ss_pred EEEEEcCCCCeEEEEEecCCc
Q 011924 436 SGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+...|.|.||++.+.|.++
T Consensus 645 IKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred EEEEECCCccEEEEeecCCce
Confidence 999999999999999999886
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=186.71 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=194.8
Q ss_pred cceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeE-EEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|..+++ ++..+++++.||++++|.-...... ....+.++.+.|.. +++. +..+..+++|+.|.+|.+|.+.
T Consensus 13 H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l-~~~~~~~~~g~i~~~i~y~--e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYL-ETHAFEGPKGFIANSICYA--ESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred CccchheeEecCCeEEeecCCCCceeeeeccCcccc-cceecccCcceeeccceec--cccCcceEeecccceEEEEecC
Confidence 3345677777 7778999999999999997544433 23455667777776 7773 3333459999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
...+...+. |...|+ |++...++. +++|+-|.++++|-. +++...+.
T Consensus 90 ~~~P~~~LkgH~snVC-----------------------------~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~ 137 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVC-----------------------------SLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ 137 (745)
T ss_pred CCCchhhhhcccccee-----------------------------eeecCCcCc-eEecccccceEEecc--hhhhcccC
Confidence 999888887 899999 888888887 999999999999964 67777899
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
+|+..|++++.-|.+ .++|||.|++|++|.- ++.++++.+|..-|+.+++-|++ .+++++.||.|++|++ +|..
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~ 211 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEV 211 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCce
Confidence 999999999999987 8999999999999975 67899999999999999998876 4678899999999998 7889
Q ss_pred EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 KEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 ~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....+|..-|.+++..+++..+++++.|++++
T Consensus 212 l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred eeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 999999999999999888889999999999875
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=162.68 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=182.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
+.--|.++.| .|+.+++++.|++|+||+..... .-.|...-..|.+.|..|.|....-|+ ++++++.|+++.||.=
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEE 90 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc-eEEEEecCCceeeeee
Confidence 3346888888 89999999999999999965443 444566677899999999997333455 5999999999999964
Q ss_pred CC-------Ceee--eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEE
Q 011924 265 GK-------YQLS--KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 265 ~~-------~~~~--~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iw 332 (475)
.. .+-+ .++. ....|. .+.|.| -|-.||+++.||.++||
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~-----------------------------DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVT-----------------------------DVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred cccccccccceeEEEEEeecCCccee-----------------------------EEEecchhcceEEEEeccCcEEEEE
Confidence 21 1111 1222 344555 899999 68889999999999999
Q ss_pred ECCCCce------EEEee-------cCCCCeEEEEEec---CCCEEEEEeCC-----CeEEEEECCCCC---ceEEEEec
Q 011924 333 DSMTGKT------IASLC-------GHLDFSFASAWHP---NGVTFATGNQD-----KTCRIWDLRNLS---ESVAVLKG 388 (475)
Q Consensus 333 d~~~~~~------~~~l~-------~h~~~v~~~~~sp---~g~~l~t~s~d-----g~v~iwd~~~~~---~~~~~~~~ 388 (475)
+....-. .+.++ .+..+..|+.|+| ...+||.|+.+ +.+.||.....+ ..+.++.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 8764322 22222 3567789999998 45789998876 478999875433 35667778
Q ss_pred CCCceEEEEEccC-C---CEEEEEcCCCeEEEEECCCC--------------------eeEEEEeccCCCeEEEEEcCCC
Q 011924 389 NLGAIRSIRYTSD-G---RYMATAEPADFVHVYDVKSG--------------------YEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 389 ~~~~v~~l~~spd-g---~~la~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~i~~l~fspdg 444 (475)
|..+|+.++|.|+ | ..||+|+.|| |+||.++.. ..+..+.+|.++|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 3 4799999999 999998731 1234455799999999999999
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
..|++++.||.++
T Consensus 301 tiLsStGdDG~VR 313 (361)
T KOG2445|consen 301 TILSSTGDDGCVR 313 (361)
T ss_pred eEEeecCCCceee
Confidence 9999999999986
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=163.37 Aligned_cols=228 Identities=13% Similarity=0.189 Sum_probs=177.5
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEc----CcEEEEEecCceEEE
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVK----DKLLVAGGFQGELIC 213 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~lvsg~~dg~i~v 213 (475)
...+...+...+|..|.+|+.........+ +. +...|+++.|. ...|++|+.||.|.+
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~l----------------l~--HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGIL----------------LS--HAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcce----------------ec--cccceEEEEecCCcchhheeeecCCCcEEE
Confidence 333333333356788999987665443321 11 13468999992 237999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v 293 (475)
|+... -.+...+..|.+.|+.|++ +|.|+. .++.+.|+.+++|++-+|+.-...+......
T Consensus 112 w~~~~---W~~~~slK~H~~~Vt~lsi--HPS~KL-ALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at------------- 172 (362)
T KOG0294|consen 112 WRVGS---WELLKSLKAHKGQVTDLSI--HPSGKL-ALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT------------- 172 (362)
T ss_pred EEcCC---eEEeeeecccccccceeEe--cCCCce-EEEEcCCceeeeehhhcCccceeeccCCcce-------------
Confidence 99765 3456788889999999999 999985 8888899999999998887766655444444
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
.+.|+|.|.++++++.++ |-+|.+.+.+....+.. +..+.|+.|- ++.+|++|..++.|++
T Consensus 173 ----------------~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 173 ----------------LVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ----------------eeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEE
Confidence 678999999999988765 89999887776655553 2446666664 6788999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEE--ccCCCEEEEEcCCCeEEEEECCCC
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRY--TSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~--spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
||... ..+...+.+|...|..+.+ .|++.+|++++.||.|+|||+...
T Consensus 234 ~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99976 7899999999999999884 678899999999999999998765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-23 Score=198.87 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=188.1
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEe
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNV 281 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (475)
+.+...-.+++|+.. .+..|...++++.+ -..++ .+++|+.|..+.+|.+.....+..+. |..+|.
T Consensus 8 m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~--~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe- 74 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTR---------EFVAHSAAVGCLKI--RKSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE- 74 (825)
T ss_pred ceeeeeeccccccch---------hhhhhhhhhceeee--eccce-eeccCCCceeeccccccCCchhheeeccCCcce-
Confidence 344444456666643 33457778888887 45555 49999999999999997776666655 889999
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCE
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~ 361 (475)
++.|++...+|++|+.+|.|++||+..++.+++|.||...+.++.|+|-+.+
T Consensus 75 ----------------------------Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 75 ----------------------------SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred ----------------------------eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+|+|+.|+.+++||++. ..+.+.+.+|...|..++|+|+|++++.++.|..++|||+..|+....+..|.+.+..+.|+
T Consensus 127 ~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred eccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 99999999999999987 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCcc
Q 011924 442 PDTESLFIGVWDRTYG 457 (475)
Q Consensus 442 pdg~~l~~~~~D~~~~ 457 (475)
|..-.|+.|+.|+++.
T Consensus 206 p~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVR 221 (825)
T ss_pred chhhhhccCCCCceee
Confidence 9998999999998875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=160.61 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=176.3
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
.+.+|..+++-|.+ +.+|.. |.+|+.|.++.+|-...|+.+.++. |.+.|-
T Consensus 5 ~l~GHERplTqiKy--N~eGDL-lFscaKD~~~~vw~s~nGerlGty~GHtGavW------------------------- 56 (327)
T KOG0643|consen 5 LLQGHERPLTQIKY--NREGDL-LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW------------------------- 56 (327)
T ss_pred ccccCccccceEEe--cCCCcE-EEEecCCCCceEEEecCCceeeeecCCCceEE-------------------------
Confidence 45679999999999 999995 9999999999999888888888888 889998
Q ss_pred eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCC-
Q 011924 306 LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNL- 379 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~- 379 (475)
|+.++-+.+.+++|+.|.+++|||+.+|+++..++ ...+|..+.|+++|++++.... .+.|.++|++..
T Consensus 57 ----~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 57 ----CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ----EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 99999999999999999999999999999999998 5678999999999998887754 467999999842
Q ss_pred -----CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 380 -----SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 380 -----~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
..|...+..+...++.+.|+|-+++|++|..+|.|.+||+++|+.... ...|...|+.|.||||..++++++.|
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence 357888888889999999999999999999999999999999865544 45688999999999999999999999
Q ss_pred CCcc
Q 011924 454 RTYG 457 (475)
Q Consensus 454 ~~~~ 457 (475)
.+..
T Consensus 212 ttak 215 (327)
T KOG0643|consen 212 TTAK 215 (327)
T ss_pred ccce
Confidence 7753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=167.15 Aligned_cols=238 Identities=14% Similarity=0.195 Sum_probs=178.4
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee-----e---eeeccccEEeccCCceEE-------E
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-----K---HFRFPWPVNVSSSYCIIL-------L 290 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~-----~---~~~~~~~v~~s~~~~~l~-------~ 290 (475)
..+.+|.+.|++++| +.+|+. |++++.|++|++|+++.+... + .+.|+..|.|+|+-..+. .
T Consensus 80 ~~LKgH~~~vt~~~F--sSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF--SSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEE--cCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 456789999999999 999997 999999999999999764322 1 233788899999987774 4
Q ss_pred EEEeeccc---ceEEEE-------------eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 291 CRLLNFMT---EKVIIC-------------LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 291 ~~v~d~~~---~~~~~~-------------~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
+++|..-. |....+ .-.+..+-+..+++++++++.|..|.||+++ |+.+..+......-+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 55554422 111111 0123456667788999999999999999998 999988887777778899
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC-------CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE--
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNL-------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK-- 425 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~-- 425 (475)
.||+|+++|+++.---|++|.+--. -..+..+++|..+|..++|||+.+.+++.+.||.++|||+.-.+..
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 9999999999999888999987421 1256778999999999999999999999999999999997532221
Q ss_pred -----EEE----eccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeeccee
Q 011924 426 -----EQE----IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYS 469 (475)
Q Consensus 426 -----~~~----~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~ 469 (475)
+.. ....+....++.||.|..|+++. |+.-.++...++..+.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYP 366 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--CCceEEEEcccCccch
Confidence 111 11234566899999999998765 3333455555554443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=175.48 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=178.6
Q ss_pred ceeEEEEEE----cCcEEEEEecCceEEEEeCCCCCc-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 189 QTQVSTLAV----KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 189 ~~~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..+|++++| .-+++++|..-|+|=+|++...+. .--...+..|.++|+++.| +|.+...+++.|.||+||+-|
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F--~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF--SPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe--cCCChhheeeeccCceeeeee
Confidence 348999999 347889999999999999953332 2224667789999999999 998877799999999999999
Q ss_pred CCCCeeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce-EE
Q 011924 264 MGKYQLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IA 341 (475)
Q Consensus 264 ~~~~~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-~~ 341 (475)
+++...-..+.. .....|+ .+.|+.+...++++..=|...+||+++++. ..
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs---------------------------~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFS---------------------------SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred ecchhhHHHhhcCccceeee---------------------------eccccCCCccEEEeecccceEEEEeecCCccch
Confidence 987543222221 1122222 678888888888888888999999997654 66
Q ss_pred EeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc---eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 342 SLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+.-|...|.+++++| ...+|||++.|++++|||+|+... +......|..+|.++.|||.|-.|++.+.|+.|+||
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 6777888999999999 678999999999999999986432 334455688899999999987679999999999999
Q ss_pred ECC---CCeeEEEEeccC----C--CeEEEEEcCCCCeEEEE
Q 011924 418 DVK---SGYEKEQEIDFF----G--EISGISFSPDTESLFIG 450 (475)
Q Consensus 418 d~~---~~~~~~~~~~~~----~--~i~~l~fspdg~~l~~~ 450 (475)
|.. ...+....+.|. . ......|.|+..++++|
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg 438 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVG 438 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccEEEEe
Confidence 974 222222333343 1 24467899999999988
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=200.60 Aligned_cols=238 Identities=15% Similarity=0.189 Sum_probs=194.7
Q ss_pred ceeEEEEEE--cC----cEEEEEecCceEEEEeCCC---CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 189 QTQVSTLAV--KD----KLLVAGGFQGELICKHLDR---PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 189 ~~~v~~l~~--~~----~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
..+...|+| .+ .+|+.|+.||.|.+|+... +...........|++.|..+.| ++....++++|+++|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf--N~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF--NPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeec--cccCCceeeccCCCCcE
Confidence 346788888 22 3688899999999999875 2222223556789999999999 99888789999999999
Q ss_pred EEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC
Q 011924 260 RDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~ 335 (475)
.|||+...+.-.++. .+..|. +++|+. ....|++++.+|.+.|||++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~-----------------------------~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIK-----------------------------CLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccce-----------------------------EeccchhhhHHhhccCCCCCceecccc
Confidence 999997744333332 345566 999998 45677888999999999999
Q ss_pred CCceEEEeecCCC--CeEEEEEecCC-CEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEE
Q 011924 336 TGKTIASLCGHLD--FSFASAWHPNG-VTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATA 408 (475)
Q Consensus 336 ~~~~~~~l~~h~~--~v~~~~~sp~g-~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~ 408 (475)
..+++-.+..+.. .+..++|||+. ..+++++.|. .|.+||+|....+++++++|...|.++.|++.+ ++|+++
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 8888887776554 46789999954 5666666543 799999999899999999999999999999966 899999
Q ss_pred cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEecCCcc
Q 011924 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVWDRTYG 457 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~D~~~~ 457 (475)
+.|+.|.+|+..+++.+..+......+..+.|+|... .+++++.||.+.
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 9999999999999999988887778899999999776 777889999886
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=175.45 Aligned_cols=234 Identities=16% Similarity=0.209 Sum_probs=187.6
Q ss_pred ccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 185 EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 185 ~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
++.....|++|.| ...+|+++|.||.+++|.++...... .+...-...+|.+.+| .|+|...+++++....++.|
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~~l~~fPi~~a~f--~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSIHLEKFPIQKAEF--APNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-heeeeeccCccceeee--cCCCceEEEecccceEEEEe
Confidence 3445668999999 67899999999999999998655432 2333445667888888 99999668888899999999
Q ss_pred ECCCCeeeeeee---c-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc
Q 011924 263 DMGKYQLSKHFR---F-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 263 d~~~~~~~~~~~---~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
|+.+.+....-. . ...+. ...+||++++|+..|..|.|+|.-..++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e-----------------------------~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSME-----------------------------RFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred eccccccccccCCCCcccchhh-----------------------------eeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 998876543222 1 12333 67889999999999999999999999999
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+.+++ -.+.|..++|+.+|+.|++++.+|.|.+||++. ..+++.+....+ .-++++.|++|.+||+|+..|.|.||
T Consensus 337 li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 337 LITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEe
Confidence 998888 577899999999999999999999999999987 577777765321 23567788999999999999999999
Q ss_pred ECCC------CeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 418 DVKS------GYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 418 d~~~------~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
|..+ .+++..+......|++|.|+||++.|++++.
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9654 2344444455678999999999999998754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=174.32 Aligned_cols=217 Identities=15% Similarity=0.200 Sum_probs=175.4
Q ss_pred EecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
..+.++.|+.. -.+++++|...+|....++ .+|. -.|+|+.| +|.+|++||.||.|.+|
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHY----------------Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHY----------------QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHH--Hhhc----------------cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 33444444443 4689999999988775554 2221 26999999 89999999999999999
Q ss_pred eCCC------CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 215 HLDR------PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 215 ~~~~------~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
.+.. .........+.+|.-+|+.+.+-+.+... .++++|.|.++++||+..+.++.++.++.++.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~-------- 221 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLYTASEDRTIKLWDLSLGVLLLTITFPSSIK-------- 221 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccc-eEEEecCCceEEEEEeccceeeEEEecCCcce--------
Confidence 8732 11222346778899999999984443344 49999999999999999999999999999999
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC----------------CceEEEeecCCC--Ce
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT----------------GKTIASLCGHLD--FS 350 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~----------------~~~~~~l~~h~~--~v 350 (475)
+++++|-++.+.+|+.+|.|.+.++.. +..+..+.||.+ .|
T Consensus 222 ---------------------av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 222 ---------------------AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred ---------------------eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 999999999999999999999887642 224556788998 99
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 351 FASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
+|++.+-||.+|++|+.||.|+|||+.. .++++++....++|+.+.+.|--+
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhccccceeEeecccc
Confidence 9999999999999999999999999976 788888887788999999977443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=182.13 Aligned_cols=233 Identities=18% Similarity=0.194 Sum_probs=190.9
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-C
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-Y 267 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~ 267 (475)
.+.++++ +++.|++|..-|+|+|+++...... .....|.+.|.|+.+.+-.-+..+|++++.|.-|.|||+.. .
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~---~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT---CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhh---hheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4556665 9999999999999999999765433 45667999999999954444566799999999999999954 5
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC--cEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG--KLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.++.++. |...|+ ++.|-..| ..+++++.|..|..--.+.......+.
T Consensus 538 ~l~qtld~HSssIT-----------------------------svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSIT-----------------------------SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred chhhhhccccccee-----------------------------EEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 5666666 788888 99998877 778888888876543322111111111
Q ss_pred c-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 345 G-----HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 345 ~-----h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
. ....++.++..|..++++++++|+.|+|||+.+ ++.++.+++ |.+....+...|.|.|||+.+.|.++.|
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 1 235689999999999999999999999999987 888888886 5567779999999999999999999999
Q ss_pred EECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+|.-+|+++.+..+|...|+++.|++|.+.|++.+.|+-+
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 9999999999999999999999999999999999999755
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=172.77 Aligned_cols=226 Identities=13% Similarity=0.216 Sum_probs=172.7
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceE----
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSF---- 223 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~---- 223 (475)
+.|+.|++|+.........+.. +.+.|..++++...++++|.|.+|+.|.++.+....
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~A------------------H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~ 147 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKA------------------HEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGK 147 (433)
T ss_pred ccCceEEEEehhhhhhhheeec------------------ccCceeeEEecccceEEecCCcceeeeeccCCcceeeecc
Confidence 4579999999776554433321 233677777766777788888888888743211000
Q ss_pred -------------------------------EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee
Q 011924 224 -------------------------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272 (475)
Q Consensus 224 -------------------------------~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (475)
....+.-....+.++.| +|....+|++|..|++|.+||+++..+++.
T Consensus 148 s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 148 SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF--NPVETSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec--CCCcchheeeeccCCceEEEecccCCccce
Confidence 00111111234667777 898888899999999999999999998887
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeE
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSF 351 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~v~ 351 (475)
.......+ .++|+|.+-.+++++.|..++.+|++. ..++....+|...|.
T Consensus 226 Vi~~mRTN-----------------------------~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 226 VILTMRTN-----------------------------TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred eeeecccc-----------------------------ceecCccccceeeccccccceehhhhhhcccchhhcccceeEE
Confidence 76665666 899999998999999999999999985 457888899999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+++|+|.|+-|++||.|.+||||.++. +.....+ .-.+..|.++.||-|.+|+++||.|+.|++|-....+
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~-~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNH-GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCC-CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999999999999999999999999976 3322222 2345689999999999999999999999999865443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=170.16 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=163.5
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..|.+|+| ..+.|++|+.|.+|++||+...+.. .++..|.+.|.+++| +|....+|++|+.|++|.+.|++.
T Consensus 244 davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~---~s~~~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 244 DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK---SSITHHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc---eehhhcCCceeEEEe--cCCCceEEEeccccceEEeeeccC
Confidence 46778888 5689999999999999999987766 666789999999999 888777899999999999999984
Q ss_pred -CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCC-CceEEEe
Q 011924 267 -YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMT-GKTIASL 343 (475)
Q Consensus 267 -~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~-~~~~~~l 343 (475)
...-..++..+.|- .++|.| ....++++..||.++-+|+|. ++++.++
T Consensus 319 ~~~s~~~wk~~g~VE-----------------------------kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~ 369 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVE-----------------------------KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL 369 (463)
T ss_pred ccccCceEEeccceE-----------------------------EEEecCCCceeEEEecCCceEEeeecCCCCCceeEE
Confidence 33344555677777 899999 555677788999999999995 5999999
Q ss_pred ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECC
Q 011924 344 CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVK 420 (475)
Q Consensus 344 ~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~ 420 (475)
+.|.+.|.++++++ ...+++|++.|++|++|++..... .+..-.-..+...|.++.|+-. +||.|+..+.++|||+.
T Consensus 370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 99999999999998 567899999999999999975222 2222222334567888888664 67788888899999998
Q ss_pred CCeeE
Q 011924 421 SGYEK 425 (475)
Q Consensus 421 ~~~~~ 425 (475)
+...+
T Consensus 450 ~~~~V 454 (463)
T KOG0270|consen 450 TNSPV 454 (463)
T ss_pred cChhH
Confidence 76543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=159.97 Aligned_cols=240 Identities=13% Similarity=0.076 Sum_probs=182.5
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
..++.|+.|..... |.+.|. ....+..+|++++| +|..+++|+.|+++++||+.++..
T Consensus 47 SWD~tVR~wevq~~---------g~~~~k-------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~---- 106 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNS---------GQLVPK-------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV---- 106 (347)
T ss_pred ccCCceEEEEEecC---------Ccccch-------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe----
Confidence 45799999986542 111110 12234458999999 899999999999999999987753
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEE-------EEEEeeccc
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL-------LCRLLNFMT 298 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~-------~~~v~d~~~ 298 (475)
.....|.++|..+.|...+.- .+|++||.|++|+.||++....+.++..+..+........++ .+.++++..
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeeeecccceeEEEEecCCCc-ceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 345578999999999755443 369999999999999999998888888776665333332222 356777765
Q ss_pred ceEEEE------eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEeecCCC---------CeEEEEEecCCCE
Q 011924 299 EKVIIC------LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLD---------FSFASAWHPNGVT 361 (475)
Q Consensus 299 ~~~~~~------~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~~h~~---------~v~~~~~sp~g~~ 361 (475)
+..... ..-++|++..++....+.|+-.|.+.|-.+..+ +.-.+++.|.. .|.+++|||.-..
T Consensus 186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 543321 115679999898888899999999999988876 44445666652 4678899998889
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
|+|++.||+..+||-.. ...+.....+..+|++.+|+.+|.++|.|.
T Consensus 266 lvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999865 566777788999999999999999888764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=166.32 Aligned_cols=233 Identities=16% Similarity=0.165 Sum_probs=172.9
Q ss_pred eEEEEEE-cCcEEEEEecCceEEEEeCCCC-------C------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRP-------G------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 191 ~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~-------~------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
+|....+ +..+.++=+..|.|.||++... + ......++.+|...=.+|+| ||-..-.+++|..-
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW--Sp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW--SPIKTGRLLSGDCV 233 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec--ccccccccccCccc
Confidence 3444444 5667777789999999998531 1 11123455677777788999 77433348888777
Q ss_pred CeEEEEECCCCeeee---ee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEE
Q 011924 257 CGVRDFDMGKYQLSK---HF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLL 331 (475)
Q Consensus 257 g~v~iwd~~~~~~~~---~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~i 331 (475)
+.|++|...++.... .| .|...|. .++||| ....|++|+-||+|+|
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-----------------------------DLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVE-----------------------------DLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred cceEeeeeccCceeecCccccccccchh-----------------------------hhccCCccCceEEeeecCceEEE
Confidence 889999988765432 11 2666676 999999 5668899999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC--CCceEEEEecCCCceEEEEEccC-CCEEE
Q 011924 332 VDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSD-GRYMA 406 (475)
Q Consensus 332 wd~~~~~--~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~spd-g~~la 406 (475)
||+|.+. .....+.|.+.|..+.|+-.-.+||+|+.||+++|||+|+ .++++..++-|..+|+++.|+|. ...|+
T Consensus 285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred EEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence 9999872 2223378999999999999878999999999999999985 35689999999999999999994 46788
Q ss_pred EEcCCCeEEEEECCCCe----------------eEEEEeccC--CCeEEEEEcCCCC-eEEEEEecC
Q 011924 407 TAEPADFVHVYDVKSGY----------------EKEQEIDFF--GEISGISFSPDTE-SLFIGVWDR 454 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~----------------~~~~~~~~~--~~i~~l~fspdg~-~l~~~~~D~ 454 (475)
+++.|.+|.|||+..-. +.+-+..|. ..+..+.|++.-. +|++.+.||
T Consensus 365 asg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred eccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 88899999999985321 112233454 3688899998654 555666665
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=165.93 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=155.1
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 267 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~- 267 (475)
=++|+| ....|++|...+.|++|...++....-..-+.+|+..|-.|+| ||..+.+|++||-||+|+|||++.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCC
Confidence 346666 4567899999999999999887766555666779999999999 9998889999999999999999887
Q ss_pred --eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC---CCceEEE
Q 011924 268 --QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIAS 342 (475)
Q Consensus 268 --~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~~~~ 342 (475)
.++..-.|...|+ .++|+..-.+||+|+++|+++|||++ .++++..
T Consensus 292 ~~~~~~~kAh~sDVN-----------------------------VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVN-----------------------------VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred ccceeEeeccCCcee-----------------------------eEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 3444444888999 99999988899999999999999998 5678999
Q ss_pred eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc---------------eEEEEecC--CCceEEEEEccCC-C
Q 011924 343 LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE---------------SVAVLKGN--LGAIRSIRYTSDG-R 403 (475)
Q Consensus 343 l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~---------------~~~~~~~~--~~~v~~l~~spdg-~ 403 (475)
++-|..+|+++.|+| +...|++++.|.+|.|||+.-... +.+.+--| ...+..+.|++.- -
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 999999999999999 567888899999999999853110 11111112 2357788898854 3
Q ss_pred EEEEEcCCCeEEEEE
Q 011924 404 YMATAEPADFVHVYD 418 (475)
Q Consensus 404 ~la~~~~dg~i~iwd 418 (475)
+|++.+.|| +.||-
T Consensus 423 ~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 423 LLVSTAIDG-FNVFK 436 (440)
T ss_pred eEEEecccc-eeEEE
Confidence 777777787 55553
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-20 Score=170.97 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=175.9
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 276 (475)
...++++||..|.|+|||+.. ..|.+...+|.+.|+++.+ +....+ +++++..|-|.|..+.++.....|.++
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~Y--N~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDY--NNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEe--cCCcce-eEEeccCCcEEEEecccCccccceecCC
Confidence 447999999999999999984 4446888899999999998 666665 999999999999999998888888854
Q ss_pred -ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEE
Q 011924 277 -WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFAS 353 (475)
Q Consensus 277 -~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l-~~h~~~v~~~ 353 (475)
..|+ .+.++|..+ +|.+++++|.|.+||+....++..+ +.|..+...+
T Consensus 164 gqsvR-----------------------------ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi 214 (673)
T KOG4378|consen 164 GQSVR-----------------------------LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI 214 (673)
T ss_pred CCeEE-----------------------------EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc
Confidence 4455 789999655 5567899999999999877776544 5799999999
Q ss_pred EEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe-eEEEEecc
Q 011924 354 AWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDF 431 (475)
Q Consensus 354 ~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~ 431 (475)
||+| +..+|++.+.|..|.+||++. ......+. ...+.+.++|+++|.+|+.|...|.|..||++..+ ++..+..|
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred eecCCccceEEEecccceEEEeeccc-ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 9999 778999999999999999985 55555554 34588999999999999999999999999998654 56667789
Q ss_pred CCCeEEEEEcCCC
Q 011924 432 FGEISGISFSPDT 444 (475)
Q Consensus 432 ~~~i~~l~fspdg 444 (475)
...|++++|-|.-
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999998764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=158.26 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=184.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
-.|++|.| .++.|+++++||.+++|++.... ......|..++...+| .+.. .+++|+-||.|+.+|+.++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F--~d~~--~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAF--ADES--TIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeec--cCCc--eEEEeccCceEEEEEecCC
Confidence 47999999 56677777899999999998653 2445567888999998 5543 3899999999999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
+....-.|..++. |+..++-...+++|+.|+.|++||.+....+..+.. .
T Consensus 86 ~~~~igth~~~i~-----------------------------ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~ 135 (323)
T KOG1036|consen 86 NEDQIGTHDEGIR-----------------------------CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-G 135 (323)
T ss_pred cceeeccCCCceE-----------------------------EEEeeccCCeEEEcccCccEEEEecccccccccccc-C
Confidence 8888788999999 999999888999999999999999997655555553 3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC----
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG---- 422 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~---- 422 (475)
..|+++.. .|+.|+.|+.+..|.+||+|+...+...-. .-.-.++++++-|++.=.++++-+|.|.+=.+...
T Consensus 136 kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 136 KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred ceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 47887766 678999999999999999998665542221 12347899999998888889999999888655443
Q ss_pred eeEEEEeccC---------CCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 423 YEKEQEIDFF---------GEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 423 ~~~~~~~~~~---------~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
.....+..|. -+|.+|+|+|--..|++|+.||.+..+=-+
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 3444555554 379999999999999999999877544333
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=164.73 Aligned_cols=259 Identities=16% Similarity=0.115 Sum_probs=197.8
Q ss_pred EEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
|+++.- .=+.++.|+.+|.+.+|++.+.+.. .++.++.+.|+++.- +|-=.. ++.|..+|+|.+++++.++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v---~~f~~~~s~IT~ieq--sPaLDV-VaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVV---YTFQEFFSRITAIEQ--SPALDV-VAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEE---EEecccccceeEecc--CCcceE-EEEeccCceEEEEEcccCc
Confidence 666655 3367899999999999999988776 455566688999887 887775 9999999999999999999
Q ss_pred eeeeeecc-ccEE---eccCCceE-------EEEEEeecccceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 269 LSKHFRFP-WPVN---VSSSYCII-------LLCRLLNFMTEKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 269 ~~~~~~~~-~~v~---~s~~~~~l-------~~~~v~d~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
.+..|+++ ++|+ |..+|..+ +.+-+||+...+.+.... .+....|-|....+++++.|..+++|
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99999976 4444 77777766 378999999988776554 33455666666677777766666555
Q ss_pred ECC--CC--ceEE-------------------------------------------------------------------
Q 011924 333 DSM--TG--KTIA------------------------------------------------------------------- 341 (475)
Q Consensus 333 d~~--~~--~~~~------------------------------------------------------------------- 341 (475)
=.. .| +.++
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 222 11 0000
Q ss_pred ------------------------------------------Eee-----cCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 011924 342 ------------------------------------------SLC-----GHLDFSFASAWHPNGVTFATGNQDKTCRIW 374 (475)
Q Consensus 342 ------------------------------------------~l~-----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iw 374 (475)
.|. .....+.+++.++.|++.+.|...|+|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 000 011346788899999999999999999999
Q ss_pred ECCCCCceEEEE---ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee---------------------------
Q 011924 375 DLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--------------------------- 424 (475)
Q Consensus 375 d~~~~~~~~~~~---~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~--------------------------- 424 (475)
++.. +-....+ ..|.++|+.++...-++.+++++.+|.+.+||.++...
T Consensus 476 NmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 476 NMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred Eccc-CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 9976 5556666 47889999999998889999999999999999876531
Q ss_pred --------------EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 --------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 --------------~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++.+.+|.+.|++++|||||++|++++.|++++
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 223336888999999999999999999998875
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-18 Score=163.59 Aligned_cols=269 Identities=13% Similarity=0.156 Sum_probs=206.7
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceE
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGEL 211 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i 211 (475)
+.|.++...+.|... .+++|-+|+...+=..+ ..+.+.....|-+++| ++..|++.+.+|.|
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~----------------~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE----------------PVIHGPEDRSIESLAWAEGGRLFSSGLSGSI 92 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceee----------------EEEecCCCCceeeEEEccCCeEEeecCCceE
Confidence 344455555555553 46788889876642221 1123334457999999 79999999999999
Q ss_pred EEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceE
Q 011924 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCII 288 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l 288 (475)
.-||+.+.+.. .......+.|+++++ +|.+.. ++.|+.||.+..++...+....... ....+-
T Consensus 93 ~EwDl~~lk~~---~~~d~~gg~IWsiai--~p~~~~-l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL-------- 158 (691)
T KOG2048|consen 93 TEWDLHTLKQK---YNIDSNGGAIWSIAI--NPENTI-LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL-------- 158 (691)
T ss_pred EEEecccCcee---EEecCCCcceeEEEe--CCccce-EEeecCCceEEEEecCCceEEEEeecccccceEE--------
Confidence 99999987766 445566788999999 999986 8888899988888887776654433 234455
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--------cCCCCeEEEEEecCCC
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--------GHLDFSFASAWHPNGV 360 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--------~h~~~v~~~~~sp~g~ 360 (475)
+++|+|++..++.|+.||.|++||...+..++... +...-|+++.|-.+ .
T Consensus 159 ---------------------slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~ 216 (691)
T KOG2048|consen 159 ---------------------SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-S 216 (691)
T ss_pred ---------------------EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-C
Confidence 99999999999999999999999999988776222 12334667777644 5
Q ss_pred EEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee---E-EEEeccCCCeE
Q 011924 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---K-EQEIDFFGEIS 436 (475)
Q Consensus 361 ~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~---~-~~~~~~~~~i~ 436 (475)
.|++|...|+|.+||... +..+..+..|.+.|.+++..+++.++.+++.|+.|.-|...+... . .....|...|.
T Consensus 217 tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVR 295 (691)
T ss_pred cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccce
Confidence 799999999999999977 888999999999999999999999999999999998888766532 1 12234667899
Q ss_pred EEEEcCCCCeEEEEEecCCcc
Q 011924 437 GISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++..++ .|++|+.|.++.
T Consensus 296 s~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 296 SMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred eeeeecc--eEEecceeeEEE
Confidence 9999887 899999887653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=157.35 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=158.7
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee----eeeccccEEeccCCceEEEEEEeecccceEE
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK----HFRFPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
+...|.+.|+++.+ .+....++++|+.||.|.+||++...... ..++...|. ..-.-
T Consensus 38 ~~r~HgGsvNsL~i--d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~-----------------~~h~~ 98 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQI--DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVA-----------------KQHEN 98 (397)
T ss_pred eeccCCCccceeee--ccccceEEeecCCCccEEEEEeccccchhhccceeheeeecc-----------------ccCCc
Confidence 33467889999999 66655569999999999999997533110 000000000 00000
Q ss_pred EEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCC
Q 011924 303 ICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 303 ~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~ 378 (475)
.+...|..+.|-| |...+.+++-|.++++||..+-+....++ -++.|++-+|+| .-.++|+|..+-.|++.|+..
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 0111333888999 77789999999999999999988887777 577899999999 345788888899999999977
Q ss_pred CCceEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECCCC-eeEEE--------------EeccCCCeEEEEEcC
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSG-YEKEQ--------------EIDFFGEISGISFSP 442 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~i~~l~fsp 442 (475)
+...+++.+|.+.|.++.|+|... .||+|+.||.|++||++.. -+... -..|.+.+.+++|+.
T Consensus 178 -Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 178 -GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred -CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 899999999999999999999765 6789999999999999753 12111 224678899999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+|.+|++.+.|..++
T Consensus 257 d~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 257 DARYLASCGTDDRIR 271 (397)
T ss_pred cchhhhhccCccceE
Confidence 999999988877664
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=166.42 Aligned_cols=261 Identities=15% Similarity=0.236 Sum_probs=196.7
Q ss_pred eeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEE
Q 011924 135 NLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICK 214 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw 214 (475)
.+.|.+....+|.++|..+..|+..+....++++.-....|...|++....+-.. ....|+.++.||.+.+.
T Consensus 19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~--------~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGK--------GSDTLLICSNDGRFVIL 90 (737)
T ss_pred eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCC--------CcceEEEEcCCceEEEe
Confidence 3446666666666778899999988888877777655555555555532222111 23567778889999887
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-eccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~s~~~~~l~~~~v 293 (475)
+-. .++. +....|.+.+.+-.| +|+|.- |++++.||.|++|.-.. -+..++ +...+|.
T Consensus 91 ~k~-~rVE---~sv~AH~~A~~~gRW--~~dGtg-Llt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~------------- 149 (737)
T KOG1524|consen 91 NKS-ARVE---RSISAHAAAISSGRW--SPDGAG-LLTAGEDGVIKIWSRSG-MLRSTVVQNEESIR------------- 149 (737)
T ss_pred ccc-chhh---hhhhhhhhhhhhccc--CCCCce-eeeecCCceEEEEeccc-hHHHHHhhcCceeE-------------
Confidence 633 2222 455678999999999 999997 88888999999998643 222222 3667788
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
|++|.|+.+.++.+. .+.+.|=-+.....+-..+.|.+-|.++.|+|..+++++|+.|-..+|
T Consensus 150 ----------------c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 150 ----------------CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred ----------------EEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence 999999888777663 456777777777777788999999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
||.. +.++..-..|.-+|++++|.|+ +.++.++.+ ++++ .....|.|..++|||||..+++|...
T Consensus 213 WD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 213 WDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred eccc--CcccccCChhccceeeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccC
Confidence 9984 7788888889999999999999 666666643 3441 12245789999999999999999887
Q ss_pred CCc
Q 011924 454 RTY 456 (475)
Q Consensus 454 ~~~ 456 (475)
|.+
T Consensus 278 G~v 280 (737)
T KOG1524|consen 278 GQL 280 (737)
T ss_pred ceE
Confidence 754
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=160.80 Aligned_cols=234 Identities=16% Similarity=0.221 Sum_probs=175.5
Q ss_pred CceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--------cccc
Q 011924 208 QGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--------FPWP 278 (475)
Q Consensus 208 dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~ 278 (475)
.|...+.-+...+ ......+..+|.++|..++| +|-+...+++||.|.+|.||.+..+.+.+.+. |...
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w--~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr 133 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDW--CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR 133 (472)
T ss_pred CcceeecccccccccCCCCCCccCcccccccccc--CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee
Confidence 3455555554333 12123456789999999999 99888889999999999999997655443332 4444
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
|. .++|+| -.+.|++++.|..|.+|++.+|..+.++. |.+.|++++|+-
T Consensus 134 Vg-----------------------------~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 134 VG-----------------------------LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR 183 (472)
T ss_pred EE-----------------------------EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEecc
Confidence 44 899999 45678889999999999999999998888 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCCEEEEEc---CCCeEEEEECCCCeeEEEE--ecc
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQE--IDF 431 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~~~~~--~~~ 431 (475)
+|.+|+|.+.|+.|||||.|. +..+..-.+|.+ .-..+.|-.+|.++.+|- .+..+.+||..+-.....+ .+.
T Consensus 184 dGs~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred CCceeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc
Confidence 999999999999999999998 788887777765 234566778898555553 3578999997765544333 234
Q ss_pred CCCeEEEEEcCCCCeEEE-EEecCCcceEEEEEeecceeeeccc
Q 011924 432 FGEISGISFSPDTESLFI-GVWDRTYGSLLEYGRCRNYSYLDSL 474 (475)
Q Consensus 432 ~~~i~~l~fspdg~~l~~-~~~D~~~~~ll~~~~~~~~~~l~~~ 474 (475)
...|.-.-|.||...|.. |-.|+.|+-.--.......+||+.+
T Consensus 263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence 456777778999988875 5567777544444455557888754
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=154.32 Aligned_cols=222 Identities=17% Similarity=0.178 Sum_probs=173.8
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---- 274 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---- 274 (475)
.-+||+||.-|.|+|.|+..... .....+|...|+.|.+ +|....+++++|.|.+||+|++++..++..|.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~---~~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQC---SKNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred CeeEEeecceeEEEEEecchhhh---ccceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 56899999999999999876543 3667789999999999 99988889999999999999999999999887
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE--------------
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-------------- 340 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~-------------- 340 (475)
|...|. ++.|+++|.+++++|.|..+.+|++...+..
T Consensus 180 HrdeVL-----------------------------SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 180 HRDEVL-----------------------------SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred ccCcEE-----------------------------EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 566777 9999999999999999999999999732110
Q ss_pred --------E------EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-------------eEEEEecCCCce
Q 011924 341 --------A------SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-------------SVAVLKGNLGAI 393 (475)
Q Consensus 341 --------~------~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-------------~~~~~~~~~~~v 393 (475)
. +-.-|..+|-|+.|- |.++++-|-++.|..|-.-...+ .+..+.-.+..|
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 0 112367777777773 67899988889999998722121 223333344556
Q ss_pred EEEE--EccCCCEEEEEcCCCeEEEEECCCCeeEE-EEecc---CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 394 RSIR--YTSDGRYMATAEPADFVHVYDVKSGYEKE-QEIDF---FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 394 ~~l~--~spdg~~la~~~~dg~i~iwd~~~~~~~~-~~~~~---~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+-+. |.|-+++||.|...|.|.+||++...+.. ....| ...|...+||.||..|+..+.|+++
T Consensus 309 Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 309 WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 6655 46778999999999999999998765532 22222 2579999999999999999999776
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-17 Score=151.15 Aligned_cols=227 Identities=15% Similarity=0.178 Sum_probs=161.9
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeC
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~ 216 (475)
|......|.--+++.+.+|+..+.+.++..- .+...|.+|+. ....|++|+.|..|..||-
T Consensus 254 F~engdviTgDS~G~i~Iw~~~~~~~~k~~~------------------aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 254 FLENGDVITGDSGGNILIWSKGTNRISKQVH------------------AHDGGVFSLCMLRDGTLLSGGKDRKIILWDD 315 (626)
T ss_pred EcCCCCEEeecCCceEEEEeCCCceEEeEee------------------ecCCceEEEEEecCccEeecCccceEEeccc
Confidence 3333333333467888899886555443221 24457888888 5556777999999999983
Q ss_pred CCCCce--------------------E-----------------EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 217 DRPGVS--------------------F-----------------CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 217 ~~~~~~--------------------~-----------------~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+-.+.. + ...+..+|....+.++. +|+.+. +++++.|+++
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~--hps~~q-~~T~gqdk~v 392 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT--HPSKNQ-LLTCGQDKHV 392 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc--CCChhh-eeeccCcceE
Confidence 211100 0 01122334445566666 666654 7777777777
Q ss_pred EEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 260 RDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
++|+ ..++..+.....++. |+.|+|.| .+|+|...|...+.|..+...
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~-----------------------------~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAE-----------------------------CADFHPSG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EEcc--CCceeEEEEecCcee-----------------------------EeeccCcc-eEEEeeccceEEEEeccccee
Confidence 7777 444444444555666 99999999 999999999999999998665
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
+..-. ...++.+++|+|+|.+||.|+.|+.|.||-+...+....... .+..+|+.+.||+|+++|.+-+.|-.|..|.
T Consensus 441 v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 441 VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 55444 488999999999999999999999999999976555444332 3347999999999999999999998899994
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=163.24 Aligned_cols=264 Identities=16% Similarity=0.091 Sum_probs=192.0
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|.|++. .|.+|++|+.||+|+||.+.+.... .+.. -.+.|.+|+| +|.++.-++++.....+.+-+..
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv---r~~~-~d~~I~~vaw--~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV---RTVQ-FDSEIRSVAW--NPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE---EEEe-ecceeEEEEe--cCCCCceeEEEEecCceEEeCcc
Confidence 3457888888 8999999999999999999875543 2222 2347999999 88776545544455555544332
Q ss_pred CCe---------e--------------------------------eeeeeccccEEeccCCceEEEE---------EEee
Q 011924 266 KYQ---------L--------------------------------SKHFRFPWPVNVSSSYCIILLC---------RLLN 295 (475)
Q Consensus 266 ~~~---------~--------------------------------~~~~~~~~~v~~s~~~~~l~~~---------~v~d 295 (475)
-|. + +.+......+.++..|..++++ -|..
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 110 0 0111122334456666666543 2333
Q ss_pred cccceEEEEe----eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 011924 296 FMTEKVIICL----LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371 (475)
Q Consensus 296 ~~~~~~~~~~----~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v 371 (475)
+..+.....+ ..++++.|+|...+|++++. ..|+|||+..+..+..+......|..++.||.|..|+.|+.|+.+
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM 631 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence 3333322111 15678999998888888765 469999998877777776667789999999999999999999999
Q ss_pred EEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC------CC---eeEEEEeccCC----CeEEE
Q 011924 372 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK------SG---YEKEQEIDFFG----EISGI 438 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~------~~---~~~~~~~~~~~----~i~~l 438 (475)
..+|+.-..++.+++..|..++++++|++.-.++|+|+.||++.||--. .. .++..+.+|.. .|...
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 9999987788999999999999999999999999999999999998421 11 23455556654 48889
Q ss_pred EEcCCCCeEEEEEecCCcce
Q 011924 439 SFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~ 458 (475)
.|+|.-.+|++++.|++++-
T Consensus 712 ~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred cccCCCceEEecCCCceEEe
Confidence 99999999999999998853
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-18 Score=148.86 Aligned_cols=247 Identities=16% Similarity=0.154 Sum_probs=192.0
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-------CeEEEEECCCCe---------ee
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-------CGVRDFDMGKYQ---------LS 270 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-------g~v~iwd~~~~~---------~~ 270 (475)
.+++|.+..++..+.....+.+.++.+.|+.|+- +|....+|+++.++ ..+.||.+.... ++
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las--~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLAS--SPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhc--CCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 4688999998887776667888899999999999 99988888887653 246799885421 22
Q ss_pred eeee-----ccccEEeccCCceEE-----EEEEeecccceEEEE----------eeeeeeEEECC--CCcEEEEEeCCCc
Q 011924 271 KHFR-----FPWPVNVSSSYCIIL-----LCRLLNFMTEKVIIC----------LLCLQHSSQSP--DGKLLIIVGDNPD 328 (475)
Q Consensus 271 ~~~~-----~~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~----------~~~i~~~~~sp--~g~~l~~~~~dg~ 328 (475)
..+. ....|.|.|++..++ .+.+|++..+..+.. ...+++-+||| +|+.+++. .+++
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~t 194 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDST 194 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCc
Confidence 2222 124566888888776 467999887665321 11466888999 88888876 5788
Q ss_pred EEEEECCCCceEEEee-cCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC-CCEE
Q 011924 329 GLLVDSMTGKTIASLC-GHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYM 405 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g-~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l 405 (475)
+..||+++.+....+. .|...|..+.|+|+. .+|+|++.||.|+|||.|+...++..+.+|...|++++|+|. .++|
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 9999999888766665 588899999999965 578899999999999999999999999999999999999995 4688
Q ss_pred EEEcCCCeEEEEECCCCe-----------------------------eEEEEeccCCCeEEEEEcCCCCeEEEE-EecCC
Q 011924 406 ATAEPADFVHVYDVKSGY-----------------------------EKEQEIDFFGEISGISFSPDTESLFIG-VWDRT 455 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~ 455 (475)
++++.|..|.+|...+-. .+.++..|...|.+++||.-..++++. +.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 899999999999754211 123455688899999999988888765 88875
Q ss_pred c
Q 011924 456 Y 456 (475)
Q Consensus 456 ~ 456 (475)
+
T Consensus 355 v 355 (370)
T KOG1007|consen 355 V 355 (370)
T ss_pred E
Confidence 4
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-17 Score=157.06 Aligned_cols=299 Identities=16% Similarity=0.197 Sum_probs=202.7
Q ss_pred CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc---EEEEEecCceEEEEe
Q 011924 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK---LLVAGGFQGELICKH 215 (475)
Q Consensus 141 ~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~---~lvsg~~dg~i~vw~ 215 (475)
....+.+.....|.+|++... ..+..+.||. .+|+|+.+ ... ++++|+.||.|++|.
T Consensus 24 ~~~~vafGa~~~Iav~dp~k~--~i~t~l~GH~----------------a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~ 85 (764)
T KOG1063|consen 24 PGGLVAFGAGPAIAVADPEKI--LIVTTLDGHV----------------ARVNCVHWLPTSEIVAEMVSGDSDGRVILWK 85 (764)
T ss_pred ccceEEecCCceEEEeCcccc--eeEEeccCCc----------------cceEEEEEcccccccceEEEccCCCcEEEEE
Confidence 334455566678888887654 3344455543 36888888 333 799999999999999
Q ss_pred CCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--eeeeee------ccccEEeccC-Cc
Q 011924 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LSKHFR------FPWPVNVSSS-YC 286 (475)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~~~~~~------~~~~v~~s~~-~~ 286 (475)
++ .....+...+.+|...+.|+.- .-. ...+.+.|+++++|+.+..+ +...+. .+-.+.+.++ +.
T Consensus 86 l~-~~~~~~i~~~~g~~~~~~cv~a----~~~-~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 86 LR-DEYLIKIYTIQGHCKECVCVVA----RSS-VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT 159 (764)
T ss_pred Ee-ehheEEEEeecCcceeEEEEEe----eee-EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCc
Confidence 98 3445556666667766655533 221 12223689999999995544 222222 1222223342 22
Q ss_pred eEE-------EEEEeecccceEE------EEeeeeeeEEECCCC---cEEEEEeCCCcEEEEECCCCc------------
Q 011924 287 IIL-------LCRLLNFMTEKVI------ICLLCLQHSSQSPDG---KLLIIVGDNPDGLLVDSMTGK------------ 338 (475)
Q Consensus 287 ~l~-------~~~v~d~~~~~~~------~~~~~i~~~~~sp~g---~~l~~~~~dg~i~iwd~~~~~------------ 338 (475)
.+. .+.++....++-. .+...|.+++|...+ -+|+++++|..|+||.+.-+.
T Consensus 160 ~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t 239 (764)
T KOG1063|consen 160 FLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT 239 (764)
T ss_pred EEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc
Confidence 221 3444444432211 122267788887643 478899999999999875221
Q ss_pred ---------eE----------EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---c---eEEEEecCCCce
Q 011924 339 ---------TI----------ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---E---SVAVLKGNLGAI 393 (475)
Q Consensus 339 ---------~~----------~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~---~~~~~~~~~~~v 393 (475)
.. ..+.||.++|+++.|+|.+..|+++|.|.++.+|-..... . .+-...+..+..
T Consensus 240 ~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF 319 (764)
T KOG1063|consen 240 TLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGF 319 (764)
T ss_pred cccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccce
Confidence 11 1234899999999999999999999999999999876521 1 122223344567
Q ss_pred EEEEEccCCCEEEEEcCCCeEEEEECCCC---eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 394 RSIRYTSDGRYMATAEPADFVHVYDVKSG---YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 394 ~~l~~spdg~~la~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
....|+|++..+++-+.-|..++|-.+.. .....+.+|.+.|.+++|+|.|++|++.+-|.+.+-+..++
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 88999999999999999999999984332 23445668999999999999999999999999988666663
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=153.88 Aligned_cols=254 Identities=18% Similarity=0.214 Sum_probs=172.3
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCC------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+.+|.++.+ ..+.|++||.|..|++|.+.... .......+..|...||++.| +|+|.. +++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~gel-LASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGEL-LASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcCe-eeecCCCceE
Confidence 347888888 34489999999999999886433 12224556789999999999 999995 9999999999
Q ss_pred EEEECCCCeee------eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 260 RDFDMGKYQLS------KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 260 ~iwd~~~~~~~------~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.+|-...-+.. ...+..+-+. -. ...+...+..++|+|++..+++++-|..+++||
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~--------------k~----lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVK--------------KV----LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEE--------------EE----ecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 99976531110 0000001111 00 001222445899999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-----c--------------CC----
Q 011924 334 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-----G--------------NL---- 390 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-----~--------------~~---- 390 (475)
+..|+.+..+..|..++..++|.|-++++++-+.|...+++.+.. .+.+.... . |.
T Consensus 152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 999999999999999999999999888888888777555555421 11000000 0 00
Q ss_pred CceEEEEEccCCCE------------------------------------------------------------------
Q 011924 391 GAIRSIRYTSDGRY------------------------------------------------------------------ 404 (475)
Q Consensus 391 ~~v~~l~~spdg~~------------------------------------------------------------------ 404 (475)
.-.+.++|+|+|.+
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 01122333333333
Q ss_pred ----EEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeec
Q 011924 405 ----MATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 405 ----la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~ 466 (475)
+|.|+.+ .|.|||.++-.++....+ |...|+.++|++||.+|++.+.||-. +++.|....
T Consensus 311 yrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC-S~vtfe~~e 375 (434)
T KOG1009|consen 311 YRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC-SLVTFEPWE 375 (434)
T ss_pred cceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce-EEEEEcchh
Confidence 3344433 477888777666555443 77899999999999999999999744 566665433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=183.36 Aligned_cols=245 Identities=16% Similarity=0.243 Sum_probs=188.1
Q ss_pred cceeEEecCCCe---EEE--ecCCeEEEEecCCC---CceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcE
Q 011924 133 LRNLVWATSKHD---VYL--MSHFSVIHWSSLTS---SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKL 201 (475)
Q Consensus 133 lr~l~~~~~~~~---v~~--~~~~~v~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~ 201 (475)
...|.|+.-+.. |.. ..+++|.+|++..- ....+ ++...+ +.++|..|.| .+++
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~------la~~~~---------h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV------LATKSK---------HTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH------Hhhhcc---------cCCceeeeeccccCCce
Confidence 356778766655 333 46799999998652 11222 222222 3348999999 6779
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEE
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVN 280 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~ 280 (475)
|++|+.+|+|.|||+.+....+... .....+.|.+|+| +..-..+|++++.+|.+.|||++..+.+..+. +.....
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 9999999999999998866543211 2234567999999 77777789999999999999999988777776 333222
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCC---CcEEEEECC-CCceEEEeecCCCCeEEEEE
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDN---PDGLLVDSM-TGKTIASLCGHLDFSFASAW 355 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d---g~i~iwd~~-~~~~~~~l~~h~~~v~~~~~ 355 (475)
+| .++|+|+. ..+++++.| ..|.+||+| ...+++.+++|...|.++.|
T Consensus 209 ~S---------------------------~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 209 CS---------------------------VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ee---------------------------eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence 11 88999955 455666543 578999998 45678889999999999999
Q ss_pred ec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECCCCe
Q 011924 356 HP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 356 sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~~~~ 423 (475)
.+ |.++|++++.|+.|.+|+..+ ++.+..+......+..+.|+|... .+++++.+|.|.||.+.++.
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99 559999999999999999976 888999988888999999999665 88999999999999987654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=145.09 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=180.7
Q ss_pred eeecccceeE-EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcE
Q 011924 128 ILHFQLRNLV-WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKL 201 (475)
Q Consensus 128 ~~h~~lr~l~-~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~ 201 (475)
..|..|.+.+ |-..+.++.+ +++.++.+|+....... +..+.+ --.+.+.|..+.| -|+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~--W~~Ts~------------Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT--WSCTSS------------WRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc--eEEeee------------EEecCCcEEEEEecCccccce
Confidence 3466666655 5555666655 57899999996433321 221110 0113346778888 7899
Q ss_pred EEEEecCceEEEEeCC-----CCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC------ee
Q 011924 202 LVAGGFQGELICKHLD-----RPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY------QL 269 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~-----~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~------~~ 269 (475)
++++++|+++.||.=. ..+ .-....++....+.|..|.|....-|- .+++++.||.||||+...- ++
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchh
Confidence 9999999999999742 111 111234556677889999994333454 4889999999999987442 22
Q ss_pred eeeee--------ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCC-----CcEEEEE
Q 011924 270 SKHFR--------FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDN-----PDGLLVD 333 (475)
Q Consensus 270 ~~~~~--------~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~d-----g~i~iwd 333 (475)
...+. +..+.. |+.|+| ...+||+|+.+ +.++||.
T Consensus 155 q~Ei~~~~~pp~~~~~~~~-----------------------------CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCF-----------------------------CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred hhhhhhccCCcccccCcce-----------------------------EEeeccccccCceEEEEcccCCccccceEEEE
Confidence 22222 111222 899997 35678887765 4788887
Q ss_pred CCCC----ceEEEeecCCCCeEEEEEecC----CCEEEEEeCCCeEEEEECCCCC-------------------ceEEEE
Q 011924 334 SMTG----KTIASLCGHLDFSFASAWHPN----GVTFATGNQDKTCRIWDLRNLS-------------------ESVAVL 386 (475)
Q Consensus 334 ~~~~----~~~~~l~~h~~~v~~~~~sp~----g~~l~t~s~dg~v~iwd~~~~~-------------------~~~~~~ 386 (475)
...+ ..+.+|.+|.++|++++|.|+ -.+||+++.|| |+||.++... +.+..+
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 6533 245677899999999999994 35899999999 9999986311 234556
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC--CCeeEEEEeccCCCeEEEEEcC
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK--SGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~fsp 442 (475)
..|.+.|..++|.-.|..|++.+.||.|++|-.. +...........+.+....|++
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 7899999999999999999999999999999642 2222222233345555555554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=160.49 Aligned_cols=314 Identities=17% Similarity=0.176 Sum_probs=195.6
Q ss_pred eeecccceeE-EecCCCeEEE-ecCCeEEEEecCCCCce--EEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcE
Q 011924 128 ILHFQLRNLV-WATSKHDVYL-MSHFSVIHWSSLTSSRS--QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKL 201 (475)
Q Consensus 128 ~~h~~lr~l~-~~~~~~~v~~-~~~~~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~ 201 (475)
+.|-...+-+ |.+..-.|+. +.|.++++|.+...... ..+.+.+ + .+.. ......-| +++.
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-~-----------gg~a-~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-V-----------GGSA-GGFWGGLWSPNSNV 330 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec-c-----------cccc-cceeeEEEcCCCCE
Confidence 3566655444 7777745555 56799999998765442 2222221 0 0111 12333334 7788
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-eeeeee----cc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR----FP 276 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----~~ 276 (475)
+++-|..|..++|.......-.......+|.+.|..|+| +|.|.+ +++.|.|.+-|+|---..+ .-..+. |.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W--~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDW--DPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeee--cCCCCE-EEEeccccceeeecccccccceeeeccccccc
Confidence 999999999999993333322234567899999999999 999997 8888899999998654211 111111 33
Q ss_pred ccEE---ecc-CCceE-----EEEEEeecccceE-----E--EE---------eeeeeeEEECCCCcEEEEEeCCCcE-E
Q 011924 277 WPVN---VSS-SYCII-----LLCRLLNFMTEKV-----I--IC---------LLCLQHSSQSPDGKLLIIVGDNPDG-L 330 (475)
Q Consensus 277 ~~v~---~s~-~~~~l-----~~~~v~d~~~~~~-----~--~~---------~~~i~~~~~sp~g~~l~~~~~dg~i-~ 330 (475)
..++ |-+ +-+.+ -.+|++.....-. + .+ .-+|..+-.|...-..- -...|.. .
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~~~G~~~~ 486 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ETNTGGEAA 486 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-ccccccccc
Confidence 3333 111 11111 1344444322100 0 00 00122222221111100 0000100 0
Q ss_pred EE-ECC------------CC---------ceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCceE
Q 011924 331 LV-DSM------------TG---------KTIASLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESV 383 (475)
Q Consensus 331 iw-d~~------------~~---------~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~~~ 383 (475)
.| ... +. -.++.+.||...|++++.+|+++++|+++... .|++|+..+ ...+
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~ 565 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQV 565 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhh
Confidence 00 000 00 01245668999999999999999999998643 599999977 6677
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee----EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
..+.+|.-.|+.++|||||++|++++.|.++.+|....... ......|..-|.++.|+|++.++++++-|.++..+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 78999999999999999999999999999999999754321 22355688889999999999999999999887533
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=148.76 Aligned_cols=187 Identities=16% Similarity=0.196 Sum_probs=151.2
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
..++.| ++.|.. |++|..+|.|-|||+.+...-+.+. |..||. +++|
T Consensus 26 a~~~~F--s~~G~~-lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~-----------------------------sl~W 73 (405)
T KOG1273|consen 26 AECCQF--SRWGDY-LAVGCANGRVVIYDFDTFRIARMLSAHVRPIT-----------------------------SLCW 73 (405)
T ss_pred cceEEe--ccCcce-eeeeccCCcEEEEEccccchhhhhhcccccee-----------------------------EEEe
Confidence 577777 999986 9999999999999999998888777 899999 9999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE-ecC--
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL-KGN-- 389 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-~~~-- 389 (475)
|++|+.|++++.|..|.+||+..|.+++.+. ...+|+.+.|+| +.+.+++.-.+..-.+-++.. +.+.+ ...
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d 149 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDD 149 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCc
Confidence 9999999999999999999999999999888 678999999999 334444443344445555533 22222 111
Q ss_pred ---CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC-CCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 390 ---LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 390 ---~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.....+..|.+.|+++++|...|.+.|+|..+.+++..+.... ..|..+.|+..|++|+..+.|+.++
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR 221 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence 1122334689999999999999999999999988887776544 6899999999999999999998775
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=156.75 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=154.6
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+++.+ ...+|++++..|.|.+..+.+.... ..+..+....|..+.+ +|..+.+|.+++.+|.|.+||+...
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~~~sgqsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFTIDSGQSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccc--cceecCCCCeEEEeec--ccccceeeEeeccCCeEEEEeccCC
Confidence 67999988 7889999999999999998765544 2333344556678888 9999999999999999999999888
Q ss_pred eeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 268 QLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 268 ~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
..+.++. |..|.. .++|+| +..+|++.+.|..|.+||++..+....+.
T Consensus 198 sp~~~~~~~HsAP~~-----------------------------gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 198 SPIFHASEAHSAPCR-----------------------------GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred CcccchhhhccCCcC-----------------------------cceecCCccceEEEecccceEEEeecccccccceee
Confidence 7777665 778888 999999 66778889999999999999887777776
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
...+..+++|+|+|.+|+.|+..|.|..||+|....++.++..|...|++++|-|.-
T Consensus 249 -y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 -YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 566889999999999999999999999999999889999999999999999998764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-16 Score=142.18 Aligned_cols=225 Identities=17% Similarity=0.134 Sum_probs=170.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~ 266 (475)
.+..+.| +...|..|+.+| .++++....+. ........+.-+...|+.+ +++..+.+ +.+++.+++.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-----~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-----CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH-----hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEccc
Confidence 3555556 556777787777 66777664433 2222334455666655654 35444444 3599999999
Q ss_pred CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-
Q 011924 267 YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG- 345 (475)
Q Consensus 267 ~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~- 345 (475)
+..+..+.++.+|- ++.++. ++|+++-.. .|+|||+++.++++++..
T Consensus 78 ~~~ICe~~fpt~IL-----------------------------~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 78 KTTICEIFFPTSIL-----------------------------AVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred CceEEEEecCCceE-----------------------------EEEEcc--ceEEEEEcc-cEEEEecccceeehhhhcc
Confidence 98888888999998 888765 456665444 499999999999988864
Q ss_pred --CCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe-EEEEECC
Q 011924 346 --HLDFSFASAWHPNGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVK 420 (475)
Q Consensus 346 --h~~~v~~~~~sp~g~~l~t~s--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-i~iwd~~ 420 (475)
+...+.++++++.+.++|.-+ ..|.|.|||+.+ -+++..+..|.+++.+++|+|+|.+||+|+..|+ ||||.+.
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence 334455555666667888643 368899999987 7889999999999999999999999999999985 8999999
Q ss_pred CCeeEEEEecc--CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 421 SGYEKEQEIDF--FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 421 ~~~~~~~~~~~--~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|..+.++..- ...|.+++|+|++.+|++.+.-+++.
T Consensus 205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 99998887743 34688999999999999998887774
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-17 Score=156.24 Aligned_cols=265 Identities=13% Similarity=0.182 Sum_probs=206.6
Q ss_pred ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 132 QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
-+.++.+.+++..+..+.+..++++++..+.....+ .| +...|.|+++ +|+.+++|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtL--Kg----------------HKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPL--KG----------------HKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccccc--cc----------------ccceEEEEEEccCCceeccCCCce
Confidence 456788999999999999999999998776543322 11 2236999999 999999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEE
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL 289 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~ 289 (475)
.|.+|+-...+ .+...|+..|.|+.| +|-... +++++-. ..-+|....... ...+....+.
T Consensus 76 ~VI~W~~klEG-----~LkYSH~D~IQCMsF--NP~~h~-LasCsLs-dFglWS~~qK~V-~K~kss~R~~--------- 136 (1081)
T KOG1538|consen 76 SVIIWTSKLEG-----ILKYSHNDAIQCMSF--NPITHQ-LASCSLS-DFGLWSPEQKSV-SKHKSSSRII--------- 136 (1081)
T ss_pred eEEEecccccc-----eeeeccCCeeeEeec--CchHHH-hhhcchh-hccccChhhhhH-HhhhhheeEE---------
Confidence 99999865443 445689999999999 998875 8877543 345676654332 2333344556
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee---cCCCCeEEEEEecCC-----CE
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNG-----VT 361 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~---~h~~~v~~~~~sp~g-----~~ 361 (475)
+.+|..||.+++.|-.+|+|.|-+ .+|.+...+. |...+|++++|+|.. ..
T Consensus 137 --------------------~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 137 --------------------CCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred --------------------EeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 889999999999999999999986 3555544444 477899999999943 47
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+++..+..|+.++.+. ++.+..-+.-.-...|+.+.|+|.++..|+.|+.+++|- +.|-.+.++......|+.+...
T Consensus 196 ~aV~DW~qTLSFy~Ls--G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLS--GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEEeccceeEEEEec--ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 8888888888888884 454443333333456899999999999999999999998 6788888877778899999999
Q ss_pred CCCCeEEEEEecCCcc
Q 011924 442 PDTESLFIGVWDRTYG 457 (475)
Q Consensus 442 pdg~~l~~~~~D~~~~ 457 (475)
|+++++++|+.||++.
T Consensus 273 PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIA 288 (1081)
T ss_pred cCCceEEEEEccCeee
Confidence 9999999999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=145.64 Aligned_cols=263 Identities=12% Similarity=0.060 Sum_probs=179.1
Q ss_pred cceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+.+.|+++.| ...+|.+|...|.|++|.+.+.... ..+. .+...|+.+.. -|++. +.+-+.|+.+.+|++.
T Consensus 13 ~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~---~~~r~~g~~~it~lq~--~p~d~--l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 13 HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDL---PLIRLFGRLFITNLQS--IPNDS--LDTQGRDPLLILWTIA 85 (323)
T ss_pred ccchheehhhccchhhhcccccceEEEEEeecCccc---hhhhhhccceeeceee--cCCcc--hhhcCCCceEEEEEcc
Confidence 4457888888 5667999999999999999876655 2222 45566777766 66653 7888899999999997
Q ss_pred CCeeeeeee-ccccEE---e--ccCCceE----E-------EEEEeecccceEE--------EEeeeeeeEEECC-CCc-
Q 011924 266 KYQLSKHFR-FPWPVN---V--SSSYCII----L-------LCRLLNFMTEKVI--------ICLLCLQHSSQSP-DGK- 318 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~---~--s~~~~~l----~-------~~~v~d~~~~~~~--------~~~~~i~~~~~sp-~g~- 318 (475)
.+..+..-. ....+. | ++..... . .+++-|......+ .....+.|..+.. +++
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 644332211 111111 1 1111111 0 0111111111100 0011222333322 232
Q ss_pred -EEEEEeCCCcEEEEECCCCce----------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-Cc--eEE
Q 011924 319 -LLIIVGDNPDGLLVDSMTGKT----------IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SE--SVA 384 (475)
Q Consensus 319 -~l~~~~~dg~i~iwd~~~~~~----------~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~--~~~ 384 (475)
++++|..+|.+.+||+.++.. ......|..+|.++.+.+.-..=++|+.+..+..|.+... +. ...
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 456778999999999998833 3334468999999999986666678888888999998642 11 111
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+.-..-.|..++..||++.+|+|+.|++|+||+.++..++..+.-|.+.|.+++|+|+.+.||+++.|.++.
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 2222334688999999999999999999999999999999999999999999999999999999999998874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=147.34 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=149.3
Q ss_pred EEEEcCcEEEEEe-cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ce---
Q 011924 194 TLAVKDKLLVAGG-FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQ--- 268 (475)
Q Consensus 194 ~l~~~~~~lvsg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~--- 268 (475)
+++.++++|++++ .++.|.+|+++..+........ ...+....+.+ +|+|+.++++...++.|.+|++.+ +.
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 4444788887664 5789999999743322111111 12234567777 999998666666689999999964 22
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEE------
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA------ 341 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~------ 341 (475)
.+..+....... +++++|+|+++++++ .++.|.+||+.+...+.
T Consensus 118 ~~~~~~~~~~~~-----------------------------~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 118 PIQIIEGLEGCH-----------------------------SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred ceeeccCCCccc-----------------------------EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 222222222233 778999999886655 56899999997633221
Q ss_pred -EeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-C--ceEEEEecC------CCceEEEEEccCCCEEEEEcC
Q 011924 342 -SLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-S--ESVAVLKGN------LGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 342 -~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-~--~~~~~~~~~------~~~v~~l~~spdg~~la~~~~ 410 (475)
... .......++|+|+|+++++++. +++|.+|++... + +.+..+... ......+.|+|+|++|+++..
T Consensus 169 ~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 169 VTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred eecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 111 1234678999999999988877 899999999631 2 223333221 112336889999999998854
Q ss_pred -CCeEEEEECCCCeeEEEEecc---CCCeEEEEEcCCCCeEEEEEe-cCCc
Q 011924 411 -ADFVHVYDVKSGYEKEQEIDF---FGEISGISFSPDTESLFIGVW-DRTY 456 (475)
Q Consensus 411 -dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~fspdg~~l~~~~~-D~~~ 456 (475)
++.|.+|++.+......+..+ ......+.|+|+|++|+++.. ++++
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence 689999998543221122222 235678999999999999876 4433
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=144.93 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=177.0
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCce----EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
+..+|+.++| +.+.|++|+.|.+|.||.+...+.. .....+.+|...|..++| +|....+|++++.|.+|.
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~w--HPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQW--HPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEee--cccchhhHhhccCCceEE
Confidence 4458899999 8899999999999999999765532 124567889999999999 888877899999999999
Q ss_pred EEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 261 DFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
+|++.++..+.++.|+..|. +++|+.+|.+|++++.|..|+|||.++++.+
T Consensus 158 iWnv~tgeali~l~hpd~i~-----------------------------S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 158 IWNVGTGEALITLDHPDMVY-----------------------------SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred EEeccCCceeeecCCCCeEE-----------------------------EEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence 99999999988888999999 9999999999999999999999999999999
Q ss_pred EEeecCCC-CeEEEEEecCCCEEEEEe---CCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEE-EcCCCeE
Q 011924 341 ASLCGHLD-FSFASAWHPNGVTFATGN---QDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMAT-AEPADFV 414 (475)
Q Consensus 341 ~~l~~h~~-~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~-~~~dg~i 414 (475)
..-.+|.+ ....+.|--+|..+-||. .+.++-+||..+...++....- ....|.-.-|.||..+++. |-.|+.|
T Consensus 209 ~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 209 SEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred eecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 98888875 344566778888666663 3778999999887766433322 2345666778998887754 5568999
Q ss_pred EEEECCCCeeEEEEecc---CCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDF---FGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~---~~~i~~l~fspd 443 (475)
+-|.+....+...+..- ..+-.++.|-|.
T Consensus 289 RYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 289 RYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEEEecCCCceeEEecccccCCcccccccccc
Confidence 99999876543333321 234456666663
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=148.02 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=180.5
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
++|.+|+..+.... .++..+-+.+..+|++|.| +...+++.+.||+|++-|++....... ..
T Consensus 210 G~VG~Wn~~~~~~d--------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v-~s 274 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKD--------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV-LS 274 (498)
T ss_pred CcEEEEecCCCCCc--------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH-hh
Confidence 78899987532221 1122233445568999999 677899999999999999986543311 11
Q ss_pred ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee-eeeee-ccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 228 ~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
..........+.+ +.+... ++.+.+=|...+||+++... ...+. |...|+
T Consensus 275 ~~~d~~~fs~~d~--~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~------------------------- 326 (498)
T KOG4328|consen 275 LDTDNIWFSSLDF--SAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT------------------------- 326 (498)
T ss_pred cCccceeeeeccc--cCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccc-------------------------
Confidence 1124445566666 666665 66666677999999987554 33343 666788
Q ss_pred eeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC--ce--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC---
Q 011924 306 LCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG--KT--IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR--- 377 (475)
Q Consensus 306 ~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~--~~--~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~--- 377 (475)
+++++| ...+||+++.|++.+|||++.- +. +.....|...|.+..|||.+-.|+|.++|..|+|||..
T Consensus 327 ----sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 327 ----SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ----eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 999999 5667899999999999999843 22 23334599999999999977779999999999999984
Q ss_pred CCCceEEEEecCC-----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC-CeE-EEEEcCCCCeEEEE
Q 011924 378 NLSESVAVLKGNL-----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EIS-GISFSPDTESLFIG 450 (475)
Q Consensus 378 ~~~~~~~~~~~~~-----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~-~l~fspdg~~l~~~ 450 (475)
..-.+..++.... -.....+|.|+..++++|..-..|-|||-..++.+.++.+... .|. -..|+|-+..+++|
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence 2234444444321 1334678999999999999988999999887776666554332 343 45799998878877
Q ss_pred Ee
Q 011924 451 VW 452 (475)
Q Consensus 451 ~~ 452 (475)
+.
T Consensus 483 ~~ 484 (498)
T KOG4328|consen 483 GN 484 (498)
T ss_pred CC
Confidence 64
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=157.44 Aligned_cols=264 Identities=13% Similarity=0.101 Sum_probs=176.0
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|..+.| ....||+++.|.++++||+...+..- .....+|.+.|.+++| .|.+..+|++|+.||.|.|||++-.
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-~~~~~GH~~SvkS~cf--~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-GRLNLGHTGSVKSECF--MPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeeccceeec-ceeecccccccchhhh--ccCCCcceeeccCCCcEEEEEEecc
Confidence 46888888 56688999999999999998766442 2367899999999999 9998889999999999999999653
Q ss_pred eeeee--e------eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCc
Q 011924 268 QLSKH--F------RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGK 338 (475)
Q Consensus 268 ~~~~~--~------~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~ 338 (475)
..... + .+...- .|....---++-|-.+.+.... .| .+.+..|...||+++. |+.|++||++...
T Consensus 178 ~~d~~e~~~~~~~~~~n~~p--tpskp~~kr~~k~kA~s~ti~s---sv-Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAP--TPSKPLKKRIRKWKAASNTIFS---SV-TVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred chhhHHHHhhhhhccccCCC--CCCchhhccccccccccCceee---ee-EEEEEeccceeeeccCCCcceEEEeecccc
Confidence 31110 0 011100 0000000011111111111110 12 1456678888998887 9999999999654
Q ss_pred eEEE--------eecC---CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCc--eEEEEEccCCCE
Q 011924 339 TIAS--------LCGH---LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGA--IRSIRYTSDGRY 404 (475)
Q Consensus 339 ~~~~--------l~~h---~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~--v~~l~~spdg~~ 404 (475)
.... +..| .-.+.++.....|.+|.+.+.|++|..|+++..+ .++..+.++... -..-..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 3222 1223 2346677777788999988899999999998643 355555554321 112346899999
Q ss_pred EEEEcCCCeEEEEECCCCee-EEEEeccCCCeEEEEEcCCC-CeEEEEEecCCcceEEEEE
Q 011924 405 MATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~~ll~~~ 463 (475)
|++|+.|...++|.+.+.+. +..+.+|.-+|++++|.|.. .-+++++.|.++ .++...
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~-kiW~l~ 391 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRV-KIWRLS 391 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcce-EEEecc
Confidence 99999999999999988654 44566899999999998843 345555666655 344443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=134.89 Aligned_cols=226 Identities=14% Similarity=0.205 Sum_probs=158.6
Q ss_pred EEEEcCcEEEEEecCceEEEEeCCCC-------CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 194 TLAVKDKLLVAGGFQGELICKHLDRP-------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
+++..+++|++|...|+|.+..+... ...........|.+++..++| . .. +|++| .||.|+-|..+.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f--~--d~-~Lls~-gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF--H--DD-FLLSG-GDGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee--e--hh-heeec-cCceEEEeeehh
Confidence 34447789999999999999988531 112223445789999999999 3 22 47776 569999998754
Q ss_pred Ceeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
.......+ ...|... + ......|.++.+.|..+-++.++.|+.++.||+++|+..++
T Consensus 91 ~~es~~~K~lwe~~~P~~~-----------------~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQV-----------------D--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hhhhccchhhhhhcCcccc-----------------C--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 32211111 0001110 0 00011233888999877788888999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC----------CceEEEEEccCCCEEEEEcCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL----------GAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~----------~~v~~l~~spdg~~la~~~~dg 412 (475)
++||++++.++.--.....+++|+.||++||||.++ .+.+..+.... ..|-+++- +..+|++|+.-
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp- 227 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP- 227 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-
Confidence 999999999998855556799999999999999987 77777665422 23444544 45588888754
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.+.+|.+++.++...+ ...+++..+.|..| .+++++
T Consensus 228 ~lslwhLrsse~t~vf-pipa~v~~v~F~~d--~vl~~G 263 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVF-PIPARVHLVDFVDD--CVLIGG 263 (325)
T ss_pred ceeEEeccCCCceEEE-ecccceeEeeeecc--eEEEec
Confidence 5999999988766544 46788888888765 444444
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=160.91 Aligned_cols=275 Identities=16% Similarity=0.198 Sum_probs=188.1
Q ss_pred cceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEec
Q 011924 133 LRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~ 207 (475)
.+.+.+.+=...++.+. ...|.+|+...++.-.-++.. .+....|+.|.+ +..+|++|+.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~---------------~~~~t~Vs~l~liNe~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG---------------AFPDTRVSDLELINEQDDALLLTASS 1131 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCC---------------CCCCCccceeeeecccchhheeeecc
Confidence 34444555555566665 467889997665542222111 123357899998 6679999999
Q ss_pred CceEEEEeCCCCC---ceEEEee--ecCC---CCce-eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec--c
Q 011924 208 QGELICKHLDRPG---VSFCSRT--TYDD---NAIT-NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--P 276 (475)
Q Consensus 208 dg~i~vw~~~~~~---~~~~~~~--~~~~---~~~v-~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~ 276 (475)
||.|+||+-.... ....... +.++ .... .-++| ...... |++++.-..|||||..+.+++..+.. .
T Consensus 1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW--qQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDW--QQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred CceEEEecccccccCCceeEEeeccccccCccCCCCCeeeeh--hhhCCe-EEecCCeeEEEEEecccceeEeecccCCC
Confidence 9999999864432 1111110 1111 1111 23345 555444 55555688999999998888877763 3
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC-CCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCCCC--e
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS-PDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDF--S 350 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~~~--v 350 (475)
..++ +++-+ +.|+.+++|..||.|++||.+.. ..+...+.|++. |
T Consensus 1209 t~vT-----------------------------aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1209 TLVT-----------------------------ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPI 1259 (1387)
T ss_pred ccce-----------------------------eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccc
Confidence 3344 33332 25899999999999999998854 356777889887 9
Q ss_pred EEEEEecCCC-EEEEEeCCCeEEEEECCCC-CceEEEEecCC--C-ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 351 FASAWHPNGV-TFATGNQDKTCRIWDLRNL-SESVAVLKGNL--G-AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 351 ~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~--~-~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
..+.+.+.|- .|++|+++|.|++||+|.. ......+..|. + .++++..+++...+|+|+. +.|.||++. |..+
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l 1337 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQL 1337 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhh
Confidence 9999998664 4999999999999999973 22222333332 3 5899999999999999998 899999975 4444
Q ss_pred EEEecc-------CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 426 EQEIDF-------FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 426 ~~~~~~-------~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+..+ .+.+.+++|+|.--.||+|..|.++
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 444432 2578999999998889999877665
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-16 Score=154.10 Aligned_cols=251 Identities=14% Similarity=0.137 Sum_probs=176.5
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCc--e-EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV--S-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
+++|.|+.+ +.++|+.|..+|+|.+||+..... . ........|..++..+.|..++.+.. |+++|.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~-f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE-FFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc-eEEEecCCcEeee
Confidence 346777777 889999999999999999987664 2 22344567889999999988777754 8888899999999
Q ss_pred ECCCCee-eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC---
Q 011924 263 DMGKYQL-SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG--- 337 (475)
Q Consensus 263 d~~~~~~-~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~--- 337 (475)
+++.-.. ........... .+........+++++|.| +-..+++|+..|.|+--+....
T Consensus 321 ~~~~l~~P~e~~~~~~~~~-----------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKH-----------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred eccccccchhhcccccccc-----------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 8765322 11100000000 000000111233889988 6778999999998887443311
Q ss_pred -----ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCC
Q 011924 338 -----KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPA 411 (475)
Q Consensus 338 -----~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~d 411 (475)
+.+..+..|.++|+++.++|=+..+...+.|.+|+||.......++..+..+...|++++|||-. ..+|++..+
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence 12334556889999999999554444444499999999873367888888888889999999965 478888889
Q ss_pred CeEEEEECCCCe--eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 412 DFVHVYDVKSGY--EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 412 g~i~iwd~~~~~--~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|.|.|||+.... +.............+.|++.|+.|++|...|++.
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence 999999986532 3333333445667888999999999999988763
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-16 Score=136.43 Aligned_cols=227 Identities=14% Similarity=0.085 Sum_probs=169.9
Q ss_pred eEEEEEE--c-----CcEEEEEecCceEEEEeCCCCCceEEE------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 191 QVSTLAV--K-----DKLLVAGGFQGELICKHLDRPGVSFCS------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 191 ~v~~l~~--~-----~~~lvsg~~dg~i~vw~~~~~~~~~~~------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
+++.+-| + ..+|++. +-.+++|.+.......+. ....++.+++++..| +.-...++.++|-|-
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDT 173 (364)
T ss_pred CccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccC
Confidence 5666666 1 2456655 357999999753322211 223456678888888 776667799999999
Q ss_pred eEEEEECCCCee----eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEE
Q 011924 258 GVRDFDMGKYQL----SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLV 332 (475)
Q Consensus 258 ~v~iwd~~~~~~----~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iw 332 (475)
+..|||++++.. ...+.|...|. .++|...+ ..||++|.||.++++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~-----------------------------DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVY-----------------------------DIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCccee-----------------------------EEEeccCccceEEEecCCCcEEEE
Confidence 999999998732 22344888888 99999844 578899999999999
Q ss_pred ECCCCceEEEe-ec--CCCCeEEEEEec-CCCEEEEEeCCC-eEEEEECCCCCceEEEEecCCCceEEEEEccC-CCEEE
Q 011924 333 DSMTGKTIASL-CG--HLDFSFASAWHP-NGVTFATGNQDK-TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYMA 406 (475)
Q Consensus 333 d~~~~~~~~~l-~~--h~~~v~~~~~sp-~g~~l~t~s~dg-~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-g~~la 406 (475)
|++...--..+ +. ...+...++|++ +.+++||-..|. .|.|.|+|.+..++..+.+|.+.|..++|.|. +.+|+
T Consensus 225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHIC 304 (364)
T ss_pred EecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceee
Confidence 99965433222 22 245778899998 778999876654 69999999999999999999999999999995 46999
Q ss_pred EEcCCCeEEEEECCCCee------EEEEeccCCCeEEEEEcC-CCCeEEEEE
Q 011924 407 TAEPADFVHVYDVKSGYE------KEQEIDFFGEISGISFSP-DTESLFIGV 451 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~------~~~~~~~~~~i~~l~fsp-dg~~l~~~~ 451 (475)
+|+.|..+.|||+.+... +..+ ...++|..+.|+| .+.+|+++.
T Consensus 305 taGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEe
Confidence 999999999999976432 1111 2468999999996 456777665
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=155.28 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=184.5
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc---ccEEeccCCc--eEE------
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---WPVNVSSSYC--IIL------ 289 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~s~~~~--~l~------ 289 (475)
...|...+.+|.+.|.+|.. .|.|.+ |++|+.||+||||.+.++.+++++... ..|.|.|... +|+
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSv--dp~G~w-lasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISV--DPSGEW-LASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred cceeeeeEeccCCeEEEEEe--cCCcce-eeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc
Confidence 34566788899999999999 999987 999999999999999999999988844 3444665432 221
Q ss_pred --------------------------------EEEEeecccc--------eEEEEeeeeeeEEECCCCcEEEEEeC---C
Q 011924 290 --------------------------------LCRLLNFMTE--------KVIICLLCLQHSSQSPDGKLLIIVGD---N 326 (475)
Q Consensus 290 --------------------------------~~~v~d~~~~--------~~~~~~~~i~~~~~sp~g~~l~~~~~---d 326 (475)
.+-.|..... -.+.+...|..+.|+..|.+|+++.. .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 1224543311 12334447889999999999999854 4
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la 406 (475)
..|.|.++...+...-|.-..+.|.++.|||...+|+++++. .|+|||+.. +..++.+......|.+++.+|.|..|+
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 578899987666555565566789999999999999988774 699999976 777777877778899999999999999
Q ss_pred EEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 407 TAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.++.|+.+..||+.-. ++.+.+..|...+++++|++.=..+++|+.|+++-
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 9999999999998754 34556667889999999999999999999998875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-15 Score=145.58 Aligned_cols=232 Identities=25% Similarity=0.390 Sum_probs=183.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMG 265 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~ 265 (475)
..+.++.+ .+..++.++.++.+.+|+....... ...... +...+..+.+. ++++..+++.. ..|+.+.+|+..
T Consensus 66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee--EEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEEEEec
Confidence 35777777 7788888889999999999876512 122222 22466777776 77777334544 449999999998
Q ss_pred C-Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEE
Q 011924 266 K-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 266 ~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~ 342 (475)
. ......+. +...+. .++|+|++..+++++. ++.+++|++..+..+..
T Consensus 143 ~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T COG2319 143 TPGKLIRTLEGHSESVT-----------------------------SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193 (466)
T ss_pred CCCeEEEEEecCcccEE-----------------------------EEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence 7 55555554 777888 9999999998888875 99999999999899999
Q ss_pred eecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCCceEE-EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 343 LCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+.+|...+.+++|+|++. .+++++.|++|++||... +..+. .+.+|...+ ...|+|++.++++++.++.+++|++.
T Consensus 194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 999999999999999998 555658999999999874 56666 677777664 34899999999999999999999998
Q ss_pred CCee-EEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 421 SGYE-KEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 421 ~~~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.... ......|...+.++.|+|++..+++++.|+.
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc
Confidence 7654 4444567889999999999999999888854
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=139.66 Aligned_cols=238 Identities=14% Similarity=0.209 Sum_probs=172.2
Q ss_pred cccceeEEecCCC----eEEEecCCeEEEEecCCCCceEE--EeccCCCCCCCCCCCCccccccceeEEEEEE---cCcE
Q 011924 131 FQLRNLVWATSKH----DVYLMSHFSVIHWSSLTSSRSQV--LNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKL 201 (475)
Q Consensus 131 ~~lr~l~~~~~~~----~v~~~~~~~v~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~ 201 (475)
+....+.|.++.. ++...++..+++|.......... ..+..+ .......+++++.| +-++
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~-----------kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNN-----------KNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccC-----------cccccCCcccccccccCCcce
Confidence 3456677877763 45556778899998764322111 111110 11123358999999 7899
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee-eec---cc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FRF---PW 277 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~---~~ 277 (475)
|.+.+-|-+..||++..+........+-.|...|..|+| ...+..+|++.+.||+||+||++...-... +.. ..
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe--ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 999999999999999986433223455578899999999 777878899999999999999976432222 222 23
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEe-CCCcEEEEECCC-CceEEEeecCCCCeEEEE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVG-DNPDGLLVDSMT-GKTIASLCGHLDFSFASA 354 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~-~dg~i~iwd~~~-~~~~~~l~~h~~~v~~~~ 354 (475)
++. -++|++ +-+++|+-. +...|.|.|++. ..++.+|++|.+.|..++
T Consensus 244 pLl-----------------------------RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 244 PLL-----------------------------RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA 294 (364)
T ss_pred cce-----------------------------eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence 444 778888 667777654 456799999994 568999999999999999
Q ss_pred Eec-CCCEEEEEeCCCeEEEEECCCCCc-----eEEEEecCCCceEEEEEcc-CCCEEEEEcCC
Q 011924 355 WHP-NGVTFATGNQDKTCRIWDLRNLSE-----SVAVLKGNLGAIRSIRYTS-DGRYMATAEPA 411 (475)
Q Consensus 355 ~sp-~g~~l~t~s~dg~v~iwd~~~~~~-----~~~~~~~~~~~v~~l~~sp-dg~~la~~~~d 411 (475)
|.| .+..|+|++.|..+.|||+..... ++..+. ..+.|..+.|+| .+.+++++...
T Consensus 295 WaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 295 WAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 999 678999999999999999965332 333344 456899999997 55788887654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=141.10 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=166.1
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---c-
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---F- 275 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~- 275 (475)
..++++-.+|.|++||..+.+.. ..+..+...++.+.|..+ ++...+.+|+.||+|++||++....+..+. +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---~~fk~~~~~~N~vrf~~~-ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---EEFKGPPATTNGVRFISC-DSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---heecCCCCcccceEEecC-CCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 57888999999999999885544 556677788888988632 233358999999999999998866554443 2
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe----CCCcEEEEECCCCce-EEEe-ecCCCC
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----DNPDGLLVDSMTGKT-IASL-CGHLDF 349 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----~dg~i~iwd~~~~~~-~~~l-~~h~~~ 349 (475)
+.+.. |++.+..++.+++|. .+-.+.+||+|..+. +..+ ..|.+.
T Consensus 117 ~~~f~-----------------------------~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD 167 (376)
T KOG1188|consen 117 GTPFI-----------------------------CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD 167 (376)
T ss_pred CCcce-----------------------------EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc
Confidence 24555 888888888888885 466799999997665 5544 469999
Q ss_pred eEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCeeE
Q 011924 350 SFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 350 v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|++++||| +.++|++||.||.|.|||+..... ++...-.+...|.++.|..++ +.|.+-+......+|+++.+.+.
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 99999999 789999999999999999975322 333334466789999999888 45888888999999999987654
Q ss_pred EEEeccC------------CCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 426 EQEIDFF------------GEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 426 ~~~~~~~------------~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
..+.... ..+.......++...++++.|..-+.++.+.
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee
Confidence 3332210 1122222222445566666655555555544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=159.87 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=147.3
Q ss_pred EeCCCeEEEEECCC-Cee----eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCC
Q 011924 253 SNNDCGVRDFDMGK-YQL----SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDN 326 (475)
Q Consensus 253 ~s~dg~v~iwd~~~-~~~----~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d 326 (475)
++..|.|-||+++. |++ +-.+.....|. .++|.| |...||++++|
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vt-----------------------------Dl~WdPFD~~rLAVa~dd 649 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVT-----------------------------DLHWDPFDDERLAVATDD 649 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceee-----------------------------ecccCCCChHHeeecccC
Confidence 35678999999865 322 12222344555 899999 88999999999
Q ss_pred CcEEEEECCCC-------ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE
Q 011924 327 PDGLLVDSMTG-------KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 327 g~i~iwd~~~~-------~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 398 (475)
|.|+||.+..+ .+...+++|...|+++.||| -...|++++.|.+|++||+++ ......+.+|.+.|..++|
T Consensus 650 g~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 650 GQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred ceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEE
Confidence 99999998754 35567889999999999999 678999999999999999988 7778889999999999999
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
||+|+.+|+.+.||+|++|+.+++........ ..+.-..|.|.-||++|++.+.|......++.+.
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 99999999999999999999988765433221 1245567889999999999999987765555443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-17 Score=150.14 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=147.6
Q ss_pred eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC
Q 011924 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS 314 (475)
Q Consensus 236 ~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s 314 (475)
.++++ +.+|.. +++++.||++|+|++.....+.... +...|. ++.||
T Consensus 148 k~vaf--~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-----------------------------DL~FS 195 (398)
T KOG0771|consen 148 KVVAF--NGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-----------------------------DLDFS 195 (398)
T ss_pred eEEEE--cCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccc-----------------------------cceeC
Confidence 56667 999886 9999999999999987766554444 888999 99999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEecCC---C--EEEEEeCCCeEEEEECCCCCc----eE
Q 011924 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNG---V--TFATGNQDKTCRIWDLRNLSE----SV 383 (475)
Q Consensus 315 p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g---~--~l~t~s~dg~v~iwd~~~~~~----~~ 383 (475)
|||++|++.+.+ ..+||+.++|..+++... -......|.|+.++ . +++....-+.|+.||+..... ..
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 999999999999 899999999988877763 22345567888776 3 333334456688877754222 22
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-ccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
+........|++++.|++|+++|.|+.+|.|.|++..+.+.+.... .|.+-|+++.|+||.+++++.+.|.+...+
T Consensus 275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 2222233479999999999999999999999999998877665544 488899999999999999998887766533
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=153.34 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=173.6
Q ss_pred ccceeeeccc-ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---c
Q 011924 124 VKSTILHFQL-RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---K 198 (475)
Q Consensus 124 ~~~~~~h~~l-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~ 198 (475)
++-.+.|+.. -.+.|+++...|..+ .+..+..|+..+++....--.-| +...|.+++| +
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G----------------H~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG----------------HTGSVKSECFMPTN 156 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc----------------cccccchhhhccCC
Confidence 3444555543 345688877666664 56889999988776544311112 2224566666 8
Q ss_pred CcEEEEEecCceEEEEeCCCCCc----eEEEeeecCCC--------------------Cce-eEEEEEeCCCCCeEEEEE
Q 011924 199 DKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDN--------------------AIT-NAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~--------------------~~v-~~l~~~~s~~g~~~l~s~ 253 (475)
...+++|+.||.|.|||+..... .+|......|+ ..| ..|...+..|... |+++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSa 235 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASA 235 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeec
Confidence 88999999999999999875441 11111111111 112 2222223466665 7777
Q ss_pred eC-CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 254 NN-DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 254 s~-dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
+. |+.|+|||+++............-.+.. ..+....+.++.....|.+|.+.+.|+.|+.|
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-----------------~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-----------------HSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccC-----------------cccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 66 9999999998754332211100000000 00011123377888888988888889999999
Q ss_pred ECCCC--ceEEEeecCCCCeE--EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEE
Q 011924 333 DSMTG--KTIASLCGHLDFSF--ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMAT 407 (475)
Q Consensus 333 d~~~~--~~~~~l~~h~~~v~--~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~ 407 (475)
++.+- .++..+.++...-+ .-..+|++.++++|+.|....+|.+.+...+...+.+|.-.|++++|.|.. .-+++
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 99843 35566666543322 235689999999999999999999998888899999999999999998833 34556
Q ss_pred EcCCCeEEEEECCCC
Q 011924 408 AEPADFVHVYDVKSG 422 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~ 422 (475)
++.|..++||++..+
T Consensus 379 cSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCcceEEEeccCc
Confidence 699999999998654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=153.41 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=146.2
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC---CeEEEEECCCCeeeeeeeccccEEeccC
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKYQLSKHFRFPWPVNVSSS 284 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~s~~ 284 (475)
+.+|.+||.+.... .....+...+..+.| ||+|+. ++.++.+ ..|++||+.+++............
T Consensus 183 ~~~i~i~d~dg~~~----~~lt~~~~~v~~p~w--SPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---- 251 (429)
T PRK01742 183 PYEVRVADYDGFNQ----FIVNRSSQPLMSPAW--SPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---- 251 (429)
T ss_pred eEEEEEECCCCCCc----eEeccCCCccccceE--cCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCccC----
Confidence 47899999875442 233456667888999 999998 4444332 479999998876433322333344
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEE--EEECCCCceEEEeecCCCCeEEEEEecCCCE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGL--LVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~--iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~ 361 (475)
.++|+|+|+.|++++ .+|.+. +||+.++. +..+..+...+.+.+|+|+|+.
T Consensus 252 -------------------------~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~ 305 (429)
T PRK01742 252 -------------------------APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQS 305 (429)
T ss_pred -------------------------ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCE
Confidence 678999999888765 577654 55666555 4566767777889999999998
Q ss_pred EEEEe-CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 362 FATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 362 l~t~s-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
|+.++ .++...||++...+.....+ .+.+ ..+.|+|+|++|++++.++ +.+||+.++........ .....+.|
T Consensus 306 i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~ 379 (429)
T PRK01742 306 ILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSI 379 (429)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceE
Confidence 77655 57888999875433333333 3333 4678999999999888765 66699988865432222 23456889
Q ss_pred cCCCCeEEEEEecCCcceE
Q 011924 441 SPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~l 459 (475)
+|||++|+.++.++....+
T Consensus 380 sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 380 SPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCCCEEEEEEcCCCceEE
Confidence 9999999999988877543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=137.99 Aligned_cols=231 Identities=13% Similarity=0.113 Sum_probs=176.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GK 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~ 266 (475)
.+|+|.+| +...++.+..+.+|.|+.......-....++..|...|+.|+| +|..+. |++|+.|..-++|.. ..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW--ap~snr-Ivtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW--APKSNR-IVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee--cCCCCc-eeEccCCCCccccccCCC
Confidence 47999999 7888999999999999998877744446788899999999999 999887 999999999999998 44
Q ss_pred Ceee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE--
Q 011924 267 YQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-- 341 (475)
Q Consensus 267 ~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-- 341 (475)
++-. ..+++.+..+ ++.|+|.++.||+|+.-..|.||-.+...-..
T Consensus 88 ~~WkptlvLlRiNrAAt-----------------------------~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAAT-----------------------------CVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred CeeccceeEEEecccee-----------------------------eEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 4433 2344777888 99999999999999999999998876543321
Q ss_pred --EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----------------CCceEEEEecCCCceEEEEEccCC
Q 011924 342 --SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN-----------------LSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 342 --~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~-----------------~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
.-+.+...|.+++|||++-+|++|+.|+.+||+..-- .++.+..+....+.|..+.|+|+|
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 2234677899999999999999999999999996421 012334444456789999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCee-EEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 403 RYMATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
..|+-.+.|..|.+-|.....+ +.......-+..++.|-.+. .++.++.|
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 9999999999999999766542 22222223456666665443 33344444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-14 Score=138.98 Aligned_cols=265 Identities=26% Similarity=0.388 Sum_probs=194.7
Q ss_pred EecCCCeEEEe-cCCeEEEEecCCCC-ceEEEeccCCCCCCCCCCCCccccccceeEEEE---EEcCc-EEEEE-ecCce
Q 011924 138 WATSKHDVYLM-SHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL---AVKDK-LLVAG-GFQGE 210 (475)
Q Consensus 138 ~~~~~~~v~~~-~~~~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l---~~~~~-~lvsg-~~dg~ 210 (475)
+......+... .+..+.+|+..... ....+... +. ..+..+ ..++. +++.. ..++.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-HD----------------SSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-CC----------------CceeeEEEECCCcceEEeccCCCCcc
Confidence 44444545544 47889999977665 22222110 00 122222 22444 44543 44999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeeeee-ccccEEeccCCceE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCII 288 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l 288 (475)
+.+|++...... ......|...|..+.+ +|++.. +++++. ++.+++|++..+..+..+. +...+.
T Consensus 136 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------- 202 (466)
T COG2319 136 VKLWDLSTPGKL--IRTLEGHSESVTSLAF--SPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS-------- 202 (466)
T ss_pred EEEEEecCCCeE--EEEEecCcccEEEEEE--CCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceE--------
Confidence 999998862222 3556678888999988 999985 666665 9999999998877777666 677888
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEEecCCCEEEEEe
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
+++|+|++. .+++++.++.+++||...+..+. .+.+|.... -..|+|++.++++++
T Consensus 203 ---------------------~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 203 ---------------------SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred ---------------------EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec
Confidence 999999998 55555899999999998888887 688888876 448999999999999
Q ss_pred CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe--ccCCCeEEEEEcCCC
Q 011924 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDT 444 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~fspdg 444 (475)
.|+.+++|+++.....+..+..|...+.++.|+|++..+++++.++.+.+|+..+........ .|...+..+.|++++
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 999999999987444345556778899999999988888888888889999998887666665 677789999994343
Q ss_pred CeEEEE-EecC
Q 011924 445 ESLFIG-VWDR 454 (475)
Q Consensus 445 ~~l~~~-~~D~ 454 (475)
..++.+ ..|+
T Consensus 341 ~~~~~~~~~d~ 351 (466)
T COG2319 341 SLLVSGGSDDG 351 (466)
T ss_pred CEEEEeecCCC
Confidence 566666 4553
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-15 Score=130.45 Aligned_cols=278 Identities=19% Similarity=0.123 Sum_probs=187.5
Q ss_pred ceeeecccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeE--EEEEEcCcEE
Q 011924 126 STILHFQLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV--STLAVKDKLL 202 (475)
Q Consensus 126 ~~~~h~~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~l 202 (475)
..-.|+|+.+++--......+-. -..++.+|+..+.....+ .+. ++... .++.-+..+|
T Consensus 26 v~snhwqlk~~is~~~~s~~~ni~~t~sv~i~~~y~N~~~iv-~~y-----------------~g~~F~p~s~~~kc~~l 87 (344)
T KOG4532|consen 26 VNSNHWQLKANISLPPPSQPINISKTISVPINSHYSNPKGIV-EFY-----------------TGMTFTPGSFINKCVTL 87 (344)
T ss_pred cchhhhhhhhcccCCCCCccccccceeeeEeccccCCchhhE-Eee-----------------ecccccchHhhccccEE
Confidence 45569999998855554433322 235677787665542111 110 00011 1122267799
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-ccEEe
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-WPVNV 281 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~ 281 (475)
+.||..|++.+|.+.+..... +.-..+...|.-+.= ..+.+.-+..+++|.++++.++..+........+ -.++
T Consensus 88 a~gG~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~r--~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n- 162 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGHL--YQCDVSNNDVTLVKR--YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN- 162 (344)
T ss_pred EeccccceeeeecccCcccce--eeecccccchhhhhh--hcccccceeeccCCcceeEEEEecCcccceeecccccee-
Confidence 999999999999998665442 222223222221111 1122233777789999999998665433332222 2255
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ce-EE-EeecCCCCeEEEEEecC
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KT-IA-SLCGHLDFSFASAWHPN 358 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~-~~-~l~~h~~~v~~~~~sp~ 358 (475)
++++++++++++++++...|..|.+... .. +. .....++.-++..|+..
T Consensus 163 ----------------------------s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 163 ----------------------------SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred ----------------------------eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 8999999999999999999999988743 32 22 33445677889999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEe----cCCCceEEEEEccCC--CEEEEEcCCCeEEEEECCCCeeEEEEeccC
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLK----GNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~spdg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
...+|++.+||++.|||+|+...+..... .|.++++.+.|+|-| .+|.....-+.+++.|++++.....+....
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 99999999999999999998776655443 478999999999977 477777888899999999987655544322
Q ss_pred --------CCeEEEEEcCCCCeEEEEEecC
Q 011924 433 --------GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 433 --------~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..|.+-.|+.++..+.+...+.
T Consensus 295 d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 295 DVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cccccccccccccccccCCCcccccccchh
Confidence 2388888999888888877653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=151.06 Aligned_cols=237 Identities=19% Similarity=0.231 Sum_probs=163.2
Q ss_pred EEEEEcCcEEEE--EecCceEEEEeCCCCCceEEEeee-cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 193 STLAVKDKLLVA--GGFQGELICKHLDRPGVSFCSRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 193 ~~l~~~~~~lvs--g~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..++.+..++++ .|..|.|-|++++.++...-...- .-....|..+.| .|-....|++++.||.|++|.+..+..
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~W--dPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHW--DPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeeccc--CCCChHHeeecccCceEEEEEeccCCC
Confidence 345555555553 466799999999887744221111 123456777777 887766799999999999999977544
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
-.....+..+. ..+...|+++.|+| -...|++++.|-+|++||+++++....|.+|++
T Consensus 663 ~e~~~tPe~~l---------------------t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd 721 (1012)
T KOG1445|consen 663 PENEMTPEKIL---------------------TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD 721 (1012)
T ss_pred CcccCCcceee---------------------ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC
Confidence 32222111111 01111233999999 677899999999999999999999999999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCCEEEEEcCC----CeEEEEECCCCe
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPA----DFVHVYDVKSGY 423 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~~la~~~~d----g~i~iwd~~~~~ 423 (475)
.|+.++|||+|+.+|+.+.||+|+||.-+...+++..-++..+ .-..+.|--+|+++++.+.| ..|.+||.++-.
T Consensus 722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 9999999999999999999999999999986667766554332 22357788899999888766 468899876532
Q ss_pred --eEEEE-eccCCCeEEEEEcCCCCeEEEEEe
Q 011924 424 --EKEQE-IDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 424 --~~~~~-~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
.+.+. .+..-.+.-..+.+|...|+..+.
T Consensus 802 ~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 802 LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred CCcceeeeecccCccccccccCCCceEEEecC
Confidence 22211 111122223345667666665443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=138.80 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=167.7
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 227 (475)
+.-|.+|+..+++.........++ ... ..-.+|+| +|..|++| ....|+++++..++.......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~-----------de~--taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQ-----------DEY--TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhH-----------Hhh--hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 467899999998876543322211 011 12346666 88888876 678999999977664432222
Q ss_pred e-----cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceE
Q 011924 228 T-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKV 301 (475)
Q Consensus 228 ~-----~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~ 301 (475)
+ .+..+++.++++ +|-....++.++...++-|+.-..+.++..+. +.+.|+
T Consensus 198 t~~~~k~gq~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT--------------------- 254 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT--------------------- 254 (406)
T ss_pred hhhcccccccceeeeeec--cCCCCcceeeecccceeeeEecCCCCceeeecccCCCee---------------------
Confidence 2 334788999999 99887779999999999999887777776665 888999
Q ss_pred EEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECC-CCceEEEeecCCC-CeEEE--EEecCCCEEEEEeCCCeEEEEEC
Q 011924 302 IICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSM-TGKTIASLCGHLD-FSFAS--AWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 302 ~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~-~~~~~~~l~~h~~-~v~~~--~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
.+.|.++|+.|.+|+. +-.|..||++ .+.++..|..|.+ .-..| ...|+++.|++|+.||.|++||+
T Consensus 255 --------hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 255 --------HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred --------eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 9999999999999974 6789999999 4566777777765 33334 45689999999999999999999
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
...+..+..+..+...+..++++|-=.++|+++..
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCCcccccccccccccceecCcccceeeeccCc
Confidence 98788888888899999999999998888887754
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=149.57 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=151.1
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc-------eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
..+|.|+++ ++..+++||-||+|++|++..+.- ......+.+|...|+.+++ |+.... |++++.||+|
T Consensus 344 ~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~~-Llscs~DgTv 420 (577)
T KOG0642|consen 344 EGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKDR-LLSCSSDGTV 420 (577)
T ss_pred cCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee--cccccc-eeeecCCceE
Confidence 347999999 899999999999999997753221 1223456789999999999 777765 9999999999
Q ss_pred EEEECCCCeeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEEC
Q 011924 260 RDFDMGKYQLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~ 334 (475)
|+|....... .+|. +..|. ++.+-... ...++....+.--+++.
T Consensus 421 r~w~~~~~~~-~~f~~~~e~g~Pl------------------------------svd~~ss~~a~~~~s~~~~~~~~~~~ 469 (577)
T KOG0642|consen 421 RLWEPTEESP-CTFGEPKEHGYPL------------------------------SVDRTSSRPAHSLASFRFGYTSIDDM 469 (577)
T ss_pred EeeccCCcCc-cccCCccccCCcc------------------------------eEeeccchhHhhhhhcccccccchhh
Confidence 9999866554 3332 22222 22222111 22222223333344555
Q ss_pred CCCceEEEeec-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE
Q 011924 335 MTGKTIASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 335 ~~~~~~~~l~~-------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
..+..+..+.. ....+.-+.++|.+.+.+++..|+.|+++|..+ +.+++....|...++++++.|+|-+|++
T Consensus 470 ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 470 EVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred hhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEe
Confidence 55554444432 123567789999999999999999999999977 8999999999999999999999999999
Q ss_pred EcCCCeEEEEECCCCeeEEEEecc
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
++.|+.|++|.+....++.....|
T Consensus 549 ~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 549 GSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ecCCceeehhhccchheeeccccc
Confidence 999999999998766555544433
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=150.60 Aligned_cols=211 Identities=17% Similarity=0.136 Sum_probs=144.4
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE--E
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF--D 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw--d 263 (475)
.+.+.+| +|+.|+.++.+ .+|++|++....... .....+ ....++| +|+|+.++++.+.+|.+.|| |
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g---~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG---HNGAPAF--SPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC---ccCceeE--CCCCCEEEEEEecCCcEEEEEEE
Confidence 4666666 88888887654 479999997654331 122222 2345777 99999856666678876655 6
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-CceEE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTIA 341 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~~~~ 341 (475)
+.+++......+...+. +++|+|+|+.|+.++ .++...||++.. +....
T Consensus 279 ~~~~~~~~lt~~~~~~~-----------------------------~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNT-----------------------------EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCCeEeeccCCCCcC-----------------------------CEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 66665443333444455 789999999887665 567778887643 22233
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC--
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-- 419 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~-- 419 (475)
.+ ++.. .+++|+|+|++|+.++.++ +.+||+.+ +... .+... .....+.|+|+|++|++++.++.+.+|.+
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS-GSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC-CCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 33 3443 4678999999999888776 55599976 4433 22222 13357889999999999999888887775
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCC
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+|..+..+..|.+.+..++|||-
T Consensus 403 ~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCCCCCCcccCCC
Confidence 457777788788888999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-16 Score=134.72 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=159.0
Q ss_pred CeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCC
Q 011924 143 HDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 143 ~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
.+++. ...+.|..|...+.+....+... ..-.|+.+.. .+..|.+-+.|+.+.+|++....
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~-----------------g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRLF-----------------GRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhhh-----------------ccceeeceeecCCcchhhcCCCceEEEEEccCcc
Confidence 33444 34588899998877666655432 2235666655 66777888888888888876421
Q ss_pred -----------ceEEEeeec---------------------------------------CCCCceeEEEEEeCCCCCeEE
Q 011924 221 -----------VSFCSRTTY---------------------------------------DDNAITNAVEIYGSPSGAVHF 250 (475)
Q Consensus 221 -----------~~~~~~~~~---------------------------------------~~~~~v~~l~~~~s~~g~~~l 250 (475)
..||...+. ...+.+.+..+-+......++
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 111111000 011223333322122234467
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 251 TASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
++|..+|.|-+||+.++..+..++..+++... . ..+...+.++.+.+.-..=++|+.+-.+.
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~-------------~-----ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESP-------------N-----ASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccc-------------h-----hhccCcceeeeechhhcCCcCCCccccce
Confidence 78889999999999887555444433322200 0 00000111777777555557777778888
Q ss_pred EEECCC--CceE--EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEE
Q 011924 331 LVDSMT--GKTI--ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 331 iwd~~~--~~~~--~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la 406 (475)
.|.+.. |.+. ..++-..-.+..+.+-||++.+||+++|+.||||..++ ..++..++-|.+.|.+++|+|+...+|
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCchhh
Confidence 888763 3321 12222234578899999999999999999999999988 789999999999999999999999999
Q ss_pred EEcCCCeEEEEEC
Q 011924 407 TAEPADFVHVYDV 419 (475)
Q Consensus 407 ~~~~dg~i~iwd~ 419 (475)
.|+.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=131.05 Aligned_cols=192 Identities=16% Similarity=0.273 Sum_probs=146.2
Q ss_pred eeEEEEEEcCcEEEEEecC--ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAVKDKLLVAGGFQ--GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|.-+-|...++|..+.+ ..+++.++.... ..|...+. ..|-+|.+ + .++ |+++ -...|.|||+++.
T Consensus 47 ~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~-~ICe~~fp---t~IL~Vrm--N--r~R-LvV~-Lee~IyIydI~~M 116 (391)
T KOG2110|consen 47 VSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT-TICEIFFP---TSILAVRM--N--RKR-LVVC-LEESIYIYDIKDM 116 (391)
T ss_pred eEEEEeecccceeEEEecCCCceEEEEEcccCc-eEEEEecC---CceEEEEE--c--cce-EEEE-EcccEEEEecccc
Confidence 3566677777777766554 347777776433 33433332 34777777 3 344 5555 3445999999999
Q ss_pred eeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEE
Q 011924 268 QLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 268 ~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~ 341 (475)
+++.++. ++..+. ++++++.+.++|.-+ ..|.|.|||+.+-+++.
T Consensus 117 klLhTI~t~~~n~~gl~-----------------------------AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKGLC-----------------------------ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred eeehhhhccCCCccceE-----------------------------eeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 9988776 233344 555555667888643 57899999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCCceEEEEecCC--CceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKT-CRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~-v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.+..|.+.+.+++|+|+|.+|||+|..|| |||+.+.+ ++.+..++-.. ..|.+++|+|++++|++.+..++||||.
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 99999999999999999999999999987 79999977 77777776533 4678999999999999999999999998
Q ss_pred CCC
Q 011924 419 VKS 421 (475)
Q Consensus 419 ~~~ 421 (475)
+.+
T Consensus 247 L~~ 249 (391)
T KOG2110|consen 247 LEK 249 (391)
T ss_pred ecc
Confidence 764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-14 Score=135.97 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=145.4
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC-CCee--eeeeecccc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQL--SKHFRFPWP 278 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~-~~~~--~~~~~~~~~ 278 (475)
+++...++.|.+|++...+......... ..+....+++ +|+++.+++++..++.|.+|++. +++. .........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4455778999999997544332233333 2345667888 99999866666678899999986 3332 222223333
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-Cc---eEEEeecCCCCeEEE
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GK---TIASLCGHLDFSFAS 353 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~---~~~~l~~h~~~v~~~ 353 (475)
.. .++++|+|++|++++ .++.|.+|++.+ +. .+..+. +.....++
T Consensus 82 p~-----------------------------~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~ 131 (330)
T PRK11028 82 PT-----------------------------HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSA 131 (330)
T ss_pred ce-----------------------------EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEe
Confidence 44 889999999988876 478899999863 32 233333 23446778
Q ss_pred EEecCCCEEEEEe-CCCeEEEEECCCCCceE------EEEecCCCceEEEEEccCCCEEEEEcC-CCeEEEEECCC--Ce
Q 011924 354 AWHPNGVTFATGN-QDKTCRIWDLRNLSESV------AVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS--GY 423 (475)
Q Consensus 354 ~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~------~~~~~~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~--~~ 423 (475)
+++|+++++++++ .++.|.+||+...+... ..... ....+.++|+|+|++|+++.. ++.|.+|++.. +.
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 9999999886655 56899999997533221 11111 234678999999999988766 89999999973 32
Q ss_pred --eEEEEecc------CCCeEEEEEcCCCCeEEEEEe
Q 011924 424 --EKEQEIDF------FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 424 --~~~~~~~~------~~~i~~l~fspdg~~l~~~~~ 452 (475)
....+..+ ......+.|+|+|++|+++..
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 22222211 123446899999999999854
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-15 Score=134.30 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=172.8
Q ss_pred ccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEEC
Q 011924 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDM 264 (475)
Q Consensus 187 ~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~ 264 (475)
+...+|..++.....|++|-.+|.+.+|....+.......+.......+..+.- ++....++++|+.. ..+.+||+
T Consensus 103 l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~--~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQ--TDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeecc--CCCCCceEecCchhcccceeeeec
Confidence 344577788887778899999999999998744311111111122245566665 77777778889888 88999999
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCC-ceEE
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTG-KTIA 341 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~-~~~~ 341 (475)
+..+.+..-..... ...-.-+.+ .++.+.|-|. ...||+++.-+.+++||++.+ +++.
T Consensus 181 e~~~qiw~aKNvpn------D~L~LrVPv-------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPN------DRLGLRVPV-------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ccceeeeeccCCCC------ccccceeee-------------eeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 88755443331110 000011222 3447778776 789999999999999999965 5788
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+.--..++.++...|.++++++|..-+.+..+|++...-....+.+-.++|+++..+|.+++||+++-|..|+|+|+++
T Consensus 242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 88877889999999999999999999999999999883334444888999999999999999999999999999999998
Q ss_pred CeeEEEEeccCCCeEEEEEcCC
Q 011924 422 GYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspd 443 (475)
...+.... ....+++|.+.++
T Consensus 322 rkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 322 RKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred chhhhhhh-hhccccEEEecCC
Confidence 55443322 3456777777664
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=132.26 Aligned_cols=201 Identities=12% Similarity=0.172 Sum_probs=152.2
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE---eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~---~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+.|.|+.| ++..|++-. +..|.+|++......... ....++....++-+|..+.+|+. +++. .|++++.||
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq-v~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ-VATT-SDSTLQFWD 199 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce-EEEe-CCCcEEEEE
Confidence 358899999 777777765 889999999876542111 11122333455667732336764 5554 799999999
Q ss_pred CCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCC-Cce
Q 011924 264 MGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMT-GKT 339 (475)
Q Consensus 264 ~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~-~~~ 339 (475)
+++.+....+. |...|. .+.|+|+.. +|+++++||.|+|||.+. ..+
T Consensus 200 ~RT~~~~~sI~dAHgq~vr-----------------------------dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVR-----------------------------DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred ccchhhhcchhhhhcceee-----------------------------eccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 99988777666 667788 999999665 577889999999999984 558
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCC----------------------------ceEEEEecCC
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS----------------------------ESVAVLKGNL 390 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~----------------------------~~~~~~~~~~ 390 (475)
+..+.+|.-+|+++.|+| ...++++|+.|..|.+|...... ..+.++..|.
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 999999999999999999 56799999999999999764311 1344666788
Q ss_pred CceEEEEEccCC-CEEEEEcCCCeEEEEECCC
Q 011924 391 GAIRSIRYTSDG-RYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 391 ~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~ 421 (475)
..|.+++||.-. -.+|+-+.||++.|=.+..
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 999999998744 4678889999998877653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=143.07 Aligned_cols=213 Identities=15% Similarity=0.125 Sum_probs=139.3
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.++|.+..... ....+...+...+| +|+|+.++++...+ ..|.+||+.+++.......+....
T Consensus 176 ~~L~~~D~dG~~~~----~l~~~~~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~------ 243 (427)
T PRK02889 176 YQLQISDADGQNAQ----SALSSPEPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS------ 243 (427)
T ss_pred cEEEEECCCCCCce----EeccCCCCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc------
Confidence 35666665432222 22245567788888 99999744444222 459999998887654433444455
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE-EeCCCcEEEE--ECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII-VGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~-~~~dg~i~iw--d~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+.+|+|+|+.|+. .+.++...|| |+.++. ...+..+........|+|||+.|+
T Consensus 244 -----------------------~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 244 -----------------------APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred -----------------------ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEE
Confidence 7899999998875 4566665555 554444 556665666667789999999888
Q ss_pred EEeC-CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 364 TGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 364 t~s~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
..+. ++...||.+...+.....+..........+|||+|++|+..+..+ .|.+||+.++... .+.. ......+.
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~ 377 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPS 377 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCce
Confidence 6654 466677765422222333332233345688999999998876554 6999999887644 3332 23456789
Q ss_pred EcCCCCeEEEEEecCCcceE
Q 011924 440 FSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 440 fspdg~~l~~~~~D~~~~~l 459 (475)
|+|||+.|+.++.++....+
T Consensus 378 ~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 378 FAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred ECCCCCEEEEEEecCCCEEE
Confidence 99999999998877654333
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=133.13 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=172.0
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCC---c-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPG---V-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~---~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|.++.| ++++|++||.|-.+++|+++..- . .........|.+.|-+++| ...+. .+.+|.++++|.+.|
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F--~~~N~-~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF--DLENR-FLYSGERWGTVIKHD 133 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE--ccCCe-eEecCCCcceeEeee
Confidence 36888888 89999999999999999986321 1 1112333456689999999 65555 499999999999999
Q ss_pred CCCCeeeeeeeccc---cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc-e
Q 011924 264 MGKYQLSKHFRFPW---PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-T 339 (475)
Q Consensus 264 ~~~~~~~~~~~~~~---~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~ 339 (475)
+++.+.+..+.+.. .|. .+..+|..+.|++.+.++.|.+||.+... +
T Consensus 134 iEt~qsi~V~~~~~~~~~VY-----------------------------~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVY-----------------------------HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred cccceeeeeecccCccccee-----------------------------ecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 99999888777544 777 99999999999999999999999998554 2
Q ss_pred --EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE------------------------------
Q 011924 340 --IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL------------------------------ 386 (475)
Q Consensus 340 --~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~------------------------------ 386 (475)
+..+.........+-|+| ...+|++++..+-+.+||.|...+++...
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 222333455677889999 67889999999999999987643221110
Q ss_pred -----------------ec-CC-------CceEEEEEccCCCEEEEEcCCCeEEEEECCCC-------------------
Q 011924 387 -----------------KG-NL-------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG------------------- 422 (475)
Q Consensus 387 -----------------~~-~~-------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~------------------- 422 (475)
+. |. ..+.+++|--| +-+++|+.+-.|++|.+...
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 00 00 12334444433 23778888878999987531
Q ss_pred ----eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 423 ----YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 423 ----~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
..+..+.+|..-+..+.|+|....|++.+....++-+
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 1234566788889999999998888887766655433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=140.13 Aligned_cols=196 Identities=18% Similarity=0.173 Sum_probs=143.6
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
.+.+...+|..|++|+.||.+++|++...... .....|.+.|..+.| +|+|+. |++-+.| ..+||+++++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---l~e~~~~~eV~DL~F--S~dgk~-lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---LEEIAHHAEVKDLDF--SPDGKF-LASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh---hhhHhhcCcccccee--CCCCcE-EEEecCC-ceEEEEeccCchh
Confidence 34444448899999999999999998765544 445568889999999 999996 8887788 8999999998665
Q ss_pred eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC---c--EEEEEeCCCcEEEEECCCCc------
Q 011924 271 KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG---K--LLIIVGDNPDGLLVDSMTGK------ 338 (475)
Q Consensus 271 ~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g---~--~l~~~~~dg~i~iwd~~~~~------ 338 (475)
.... ...+-.|+ .+.|+.++ . +++.....+.|..|++..-+
T Consensus 221 a~~t~~~k~~~~~---------------------------~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 221 ARKTPFSKDEMFS---------------------------SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred hhcCCcccchhhh---------------------------hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 5444 22222211 55676665 2 23333445567776654211
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.-+.+. -...|.+++.+++|+++|.|+.||.|-|++..........-+.|...|+.+.|+|+.+++++.+.+...+|.-
T Consensus 274 ~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 274 LRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred hhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 111122 2346999999999999999999999999999875444555567999999999999999999999999888887
Q ss_pred CCC
Q 011924 419 VKS 421 (475)
Q Consensus 419 ~~~ 421 (475)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=136.54 Aligned_cols=188 Identities=20% Similarity=0.301 Sum_probs=148.0
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee---------eeeee-ccccEEeccCCceEEEEEEeecccce
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---------SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEK 300 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~---------~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~ 300 (475)
...++..+.| .++....+++|+.|..|++|-+..... ...+. |...|+
T Consensus 12 ~~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN-------------------- 69 (434)
T KOG1009|consen 12 DHEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN-------------------- 69 (434)
T ss_pred CCCceEEEEe--ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE--------------------
Confidence 4556788888 666654599999999999998865321 12222 777888
Q ss_pred EEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC--------C--------CceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM--------T--------GKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 301 ~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~--------~--------~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
++.|+|+|.+||+|+++|.+.+|-.. + -.....+.+|...|+.++|+|+++++++
T Consensus 70 ---------~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 70 ---------VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ---------EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 99999999999999999999999765 2 1234567789999999999999999999
Q ss_pred EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe--------c------
Q 011924 365 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--------D------ 430 (475)
Q Consensus 365 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~--------~------ 430 (475)
++.|.++++||+.. +.....+..|..-|..++|.|-++++++-+.|...+++.+.......... .
T Consensus 141 ~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEecc-ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 99999999999987 88999999999999999999999999999998877777765432221111 0
Q ss_pred -----cC----CCeEEEEEcCCCCeEEEE
Q 011924 431 -----FF----GEISGISFSPDTESLFIG 450 (475)
Q Consensus 431 -----~~----~~i~~l~fspdg~~l~~~ 450 (475)
|. .-...++|+|+|..|++.
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 11 123467999999999865
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=143.50 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=161.7
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC--------Ceeeeeee-ccccEEeccCCceEEEEEEeecc
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
+...|...|.++++ .|.... |++++.|+++.+|.++. .+.+.+|. |.+||-
T Consensus 289 tl~s~~d~ir~l~~--~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl----------------- 348 (577)
T KOG0642|consen 289 TLRSHDDCIRALAF--HPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL----------------- 348 (577)
T ss_pred eeecchhhhhhhhc--CCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceE-----------------
Confidence 45567777888888 777665 99999999999999933 23455666 888999
Q ss_pred cceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC----------ceEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 011924 298 TEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG----------KTIASLCGHLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~----------~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
|+++++++..+.+|+.||+|+.|++... .....+.||.+.++.+++|+....|++++.
T Consensus 349 ------------~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 349 ------------CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred ------------EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence 9999999999999999999999965411 234567899999999999999889999999
Q ss_pred CCeEEEEECCCCCce-------------------------------------------EEEEec-------CCCceEEEE
Q 011924 368 DKTCRIWDLRNLSES-------------------------------------------VAVLKG-------NLGAIRSIR 397 (475)
Q Consensus 368 dg~v~iwd~~~~~~~-------------------------------------------~~~~~~-------~~~~v~~l~ 397 (475)
||||++|.......+ +..+.. ....+..+.
T Consensus 417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 999999987431110 000000 012356778
Q ss_pred EccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 398 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 398 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.|.+.+.+++-.|+.|+++|..++..+.....|...++++++.|+|.+|++++.|+.++
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceee
Confidence 889999999999999999999999999999999999999999999999999999999875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-15 Score=139.80 Aligned_cols=200 Identities=19% Similarity=0.226 Sum_probs=146.6
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceE-EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSF-CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 276 (475)
++--|+.|-..|.|++.+........ ......-.+..|+++.| -|.++.+|+++-.+|.+.+||... .
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikW--vpg~~~~Fl~a~~sGnlyly~~~~---------~ 252 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKW--VPGSDSLFLVAHASGNLYLYDKEI---------V 252 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEE--EeCCCceEEEEEecCceEEeeccc---------c
Confidence 56667788888999888765422210 00111123467999999 566655688888999999998711 1
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
.... .. +...-+++..+++..... ..+..++..+.--++.|...+|+
T Consensus 253 ~~~t--~p-------------------------~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 253 CGAT--AP-------------------------SYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred ccCC--CC-------------------------cccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEc
Confidence 1111 00 222334666666542211 11224555665556689999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
|||++||+.++||.+||||..+ .+.+..++..-+...|++|||||+||++|+.|+-|.||.+...+.+..-.+|...|+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred CCCceEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 9999999999999999999976 666777777778899999999999999999999999999999999998899999999
Q ss_pred EEEEcC
Q 011924 437 GISFSP 442 (475)
Q Consensus 437 ~l~fsp 442 (475)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999997
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=138.36 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=143.1
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.++|.+..... .+ ..+...+....| ||+|+.++.+.. .+..|.+|++.+++.......+....
T Consensus 179 ~~l~~~d~dg~~~~---~l-t~~~~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~------ 246 (429)
T PRK03629 179 YELRVSDYDGYNQF---VV-HRSPQPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG------ 246 (429)
T ss_pred eeEEEEcCCCCCCE---Ee-ecCCCceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC------
Confidence 37888887654433 22 234557788888 999998554432 34579999998876544333444445
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
.++|+|+|+.|+.. ..++ .|++||+.+++.. .+..+...+...+|+|+|+.|+
T Consensus 247 -----------------------~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 247 -----------------------APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred -----------------------CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEE
Confidence 77899999988865 3344 5899999887654 4444455678899999999888
Q ss_pred EEeCC-CeEEEE--ECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQD-KTCRIW--DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~d-g~v~iw--d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
..+.. +...|| |+.. + ....+.........+.|+|||++|+..+.+ ..|.+||+.++... .+.. ......
T Consensus 303 f~s~~~g~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~ 378 (429)
T PRK03629 303 YTSDQAGRPQVYKVNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDET 378 (429)
T ss_pred EEeCCCCCceEEEEECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCC
Confidence 77653 444555 5543 3 334444444456678999999999876543 35889999887543 3332 223457
Q ss_pred EEEcCCCCeEEEEEecCCcce
Q 011924 438 ISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~ 458 (475)
..|||||++|+.++.++....
T Consensus 379 p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 379 PSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred ceECCCCCEEEEEEcCCCceE
Confidence 889999999999998876443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=137.67 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=143.1
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.++|.+..... ....+...+....| +|+|+.++.+.. .+..|.+||+.+++.......+..+.
T Consensus 182 ~~l~~~d~dg~~~~----~lt~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~------ 249 (435)
T PRK05137 182 KRLAIMDQDGANVR----YLTDGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF------ 249 (435)
T ss_pred eEEEEECCCCCCcE----EEecCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc------
Confidence 47888887543322 23355667888888 999997444432 34689999998877644333555555
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+.+|+|+|+.|+.. +.++ .|++||+.++.. ..+..+.......+|+|||+.|+
T Consensus 250 -----------------------~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~ 305 (435)
T PRK05137 250 -----------------------APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIV 305 (435)
T ss_pred -----------------------CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEE
Confidence 78999999987654 4444 488889887764 45666666677899999999988
Q ss_pred EEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
..+. ++ .|.+||+.. +. ...+..+.+.+..+.|+|+|++|+....+ ..|.+||+.++.. ..+. ....+..
T Consensus 306 f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~ 381 (435)
T PRK05137 306 FESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEG 381 (435)
T ss_pred EEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCC
Confidence 7764 33 688888753 33 44444445556778999999999877543 3688899865543 3332 2335778
Q ss_pred EEEcCCCCeEEEEEecC
Q 011924 438 ISFSPDTESLFIGVWDR 454 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~ 454 (475)
+.|+|||+.|+..+.++
T Consensus 382 p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 382 PTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CeECCCCCEEEEEEccC
Confidence 99999999998776544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-13 Score=121.00 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=157.9
Q ss_pred EEEEEEcCcEEEE-EecC------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 192 VSTLAVKDKLLVA-GGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 192 v~~l~~~~~~lvs-g~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
+.-|-+..++|+. ||.. ..|.|||=..... .....-.++|.+|.+ .++ . +++. ..+.|.||..
T Consensus 51 ~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~----i~el~f~~~I~~V~l--~r~--r-iVvv-l~~~I~VytF 120 (346)
T KOG2111|consen 51 IVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC----IIELSFNSEIKAVKL--RRD--R-IVVV-LENKIYVYTF 120 (346)
T ss_pred hhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE----EEEEEeccceeeEEE--cCC--e-EEEE-ecCeEEEEEc
Confidence 4444455555553 3333 6899999332222 233345667899988 555 2 5554 6789999998
Q ss_pred C-CCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCce
Q 011924 265 G-KYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKT 339 (475)
Q Consensus 265 ~-~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~ 339 (475)
. .-+.++.+. .|..+. +++-..+..+||.-| .-|.|.|.|+...+.
T Consensus 121 ~~n~k~l~~~et~~NPkGlC-----------------------------~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 121 PDNPKLLHVIETRSNPKGLC-----------------------------SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred CCChhheeeeecccCCCceE-----------------------------eecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence 6 344454443 344454 333333444555533 568999999986554
Q ss_pred --EEEeecCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCCeE
Q 011924 340 --IASLCGHLDFSFASAWHPNGVTFATGNQDKT-CRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 340 --~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~-v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
...+..|...|.|++.+-+|.++||+|..|| |||||..+ +..+..+.-. ...|.+++|||++.+||++|..|+|
T Consensus 172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 172 NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 4678899999999999999999999999997 89999988 7777777643 3579999999999999999999999
Q ss_pred EEEECCCCeeEE------------------------EEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 415 HVYDVKSGYEKE------------------------QEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 415 ~iwd~~~~~~~~------------------------~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+||.++...... ++.-..+...-++|-.+.+.+++.+.||++-++.-+
T Consensus 251 HiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 251 HIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999886532111 111123445556777776677777788877655544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=136.76 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=146.1
Q ss_pred eEEEEEE--cCcEEEEEe---cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGG---FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd 263 (475)
.+.+.+| +|+.|+..+ ....|.+|++...... .+ ....+.+..+.| +|+|+.++++.+.++ .|.+||
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l-~~~~~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV-ASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ec-cCCCCCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEE
Confidence 4566666 888887654 2457899998764432 11 122233456777 999998666655555 588899
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-C--cEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-P--DGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-g--~i~iwd~~~~~~~ 340 (475)
+.+++..........+. ...|+|+|+.|+.++.+ + .|+++++.++..
T Consensus 274 ~~tg~~~~lt~~~~~~~-----------------------------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 274 LASGQIRQVTDGRSNNT-----------------------------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCCCCEEEccCCCCCcC-----------------------------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence 98877655444444455 78999999999887754 3 455667766654
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe---E
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF---V 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~---i 414 (475)
..+..+.......+|+|+|++|+..+.+ ..|.+||+.. +. ...+... .......|+|||++|+.++.++. +
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 4444444556678999999999887653 3588899865 33 3444432 23457889999999999887753 7
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.++++ +|.....+..|.+.+..++|+|-
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 77887 45566667778889999999983
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=130.58 Aligned_cols=234 Identities=15% Similarity=0.140 Sum_probs=163.3
Q ss_pred eeEEEEEE-------cCcEEEEEecCceEEEEeCCCCCceEEEeee--cCCCCceeEEEEEeCC-CCCeEEEEEeCCCeE
Q 011924 190 TQVSTLAV-------KDKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSP-SGAVHFTASNNDCGV 259 (475)
Q Consensus 190 ~~v~~l~~-------~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v 259 (475)
.+|..++| ..+.+++.| ...+.++...........+.. .++......++|.... +++.++++++.-|.|
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvI 117 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVI 117 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEE
Confidence 45666666 234555555 456778887655532222222 2344455555664333 356678888899999
Q ss_pred EEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCC
Q 011924 260 RDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
+|.|+.++++...+. |.+.|+ .+.+.| ..+++++++.|..|++|++++.
T Consensus 118 rVid~~~~~~~~~~~ghG~sIN-----------------------------eik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSIN-----------------------------EIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred EEEecchhhhccceeccCccch-----------------------------hhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 999999999988887 899999 999999 4578899999999999999999
Q ss_pred ceEEEee---cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC--c---eE----------------E------EEe
Q 011924 338 KTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS--E---SV----------------A------VLK 387 (475)
Q Consensus 338 ~~~~~l~---~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~--~---~~----------------~------~~~ 387 (475)
.++..+- ||.+.|.++.|+++|.+|++++.|.++++|++.... . .. . +-.
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 9998874 699999999999999999999999999999986210 0 00 0 112
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC-Cee-------------EEEEeccCCCeEEE--EEcCCCCeEEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS-GYE-------------KEQEIDFFGEISGI--SFSPDTESLFIGV 451 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~-~~~-------------~~~~~~~~~~i~~l--~fspdg~~l~~~~ 451 (475)
-|...|-|++|- |.++++-+-++.|..|-.-. ++. +..+.-....|+-+ +|.|-++.||.|.
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 245566666665 56888888889999998621 111 11111123455554 4566678888876
Q ss_pred ecCC
Q 011924 452 WDRT 455 (475)
Q Consensus 452 ~D~~ 455 (475)
.-|.
T Consensus 327 q~g~ 330 (385)
T KOG1034|consen 327 QSGK 330 (385)
T ss_pred CCCc
Confidence 5543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=138.67 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=132.9
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFC 224 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~ 224 (475)
..-+.+.+.++...+...+++.... .....|+|+.| +...++++-.+|.+++++......
T Consensus 192 f~tGqvq~idp~~~~~sklfne~r~--------------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~--- 254 (636)
T KOG2394|consen 192 FTTGQVQLIDPINFEVSKLFNEERL--------------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG--- 254 (636)
T ss_pred eccCceEEecchhhHHHHhhhhccc--------------ccccceEEEEEEeCCCceEEEEEecCceEEeecccccc---
Confidence 4456666666666544555544432 23368999999 666777777899999998732111
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEE
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
.....+...+++.. +... .|-- .+...+.... ...+++
T Consensus 255 ----------~t~p~~~~~k~~~~-f~i~-------t~ksk~~rNPv~~w~~~~g~in---------------------- 294 (636)
T KOG2394|consen 255 ----------ATAPSYQALKDGDQ-FAIL-------TSKSKKTRNPVARWHIGEGSIN---------------------- 294 (636)
T ss_pred ----------CCCCcccccCCCCe-eEEe-------eeeccccCCccceeEecccccc----------------------
Confidence 11111111334433 2222 1110 1112222222 233566
Q ss_pred EEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
..+|+|||++||+++.||.++|+|..+..++..++..-+...|++|||||++|++|+.|-.|.||.+.. .+.
T Consensus 295 -------~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRV 366 (636)
T KOG2394|consen 295 -------EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRV 366 (636)
T ss_pred -------ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceE
Confidence 889999999999999999999999999988888888888999999999999999999999999999976 788
Q ss_pred EEEEecCCCceEEEEEcc
Q 011924 383 VAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~sp 400 (475)
+..-++|.+.|..++|.|
T Consensus 367 VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccccccceeeEeecc
Confidence 888899999999999983
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-16 Score=143.21 Aligned_cols=216 Identities=19% Similarity=0.196 Sum_probs=178.9
Q ss_pred EEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee
Q 011924 194 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 271 (475)
Q Consensus 194 ~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (475)
.+.+ +|..|+.||..|.|..+|+.+....+...+ ...|..+.| -.+.++ ++++ ....+.|||- .|..+.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~--LHneq~-~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTF--LHNEQF-FAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhh--hcchHH-HHhh-hhceEEEecC-CCcEEe
Confidence 4445 899999999999999999987765543332 334677777 455554 6665 6678999996 466667
Q ss_pred eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE
Q 011924 272 HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF 351 (475)
Q Consensus 272 ~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~ 351 (475)
.+.....|+ .+.|-|-.-+|++++..|.+..-|+.+|+.+..+..-.+.+.
T Consensus 205 Clk~~~~v~-----------------------------rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 205 CLKRHIRVA-----------------------------RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred ehhhcCchh-----------------------------hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 777666777 889999999999999999999999999999999988888899
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
.++-+|-...+-+|...|+|.+|.... ..++..+-.|.++|.++++.++|+|+||++.|..++|||++....+.++..
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-
Confidence 999999888999999999999999965 788888889999999999999999999999999999999998887766655
Q ss_pred CCCeEEEEEcCCCCeEEEE
Q 011924 432 FGEISGISFSPDTESLFIG 450 (475)
Q Consensus 432 ~~~i~~l~fspdg~~l~~~ 450 (475)
.-+...++||..| .||++
T Consensus 334 p~~a~~ls~Sqkg-lLA~~ 351 (545)
T KOG1272|consen 334 PHPASNLSLSQKG-LLALS 351 (545)
T ss_pred CCCcccccccccc-ceeee
Confidence 4567788898765 44444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=138.10 Aligned_cols=214 Identities=16% Similarity=0.115 Sum_probs=142.5
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
.+|.+||.+..... ....+...+....| +|+|+.++.+.. ....|.+|++.+++.......+....
T Consensus 184 ~~l~i~D~~g~~~~----~lt~~~~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~------ 251 (433)
T PRK04922 184 YALQVADSDGYNPQ----TILRSAEPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING------ 251 (433)
T ss_pred EEEEEECCCCCCce----EeecCCCccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc------
Confidence 46888887643322 22344566778888 999997444432 23469999998876543333344444
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|+|+.|+.. +.++ .|++||+.+++. ..+..+......++|+|+|+.|+
T Consensus 252 -----------------------~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~ 307 (433)
T PRK04922 252 -----------------------APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIY 307 (433)
T ss_pred -----------------------CceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence 67899999987654 4444 699999988764 45665655567789999999888
Q ss_pred EEeC-CCe--EEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQ-DKT--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~-dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
.++. ++. |.++|+.. ++ ...+.........++|+|+|++|+..+.++ .|.+||+.++... .+. +......
T Consensus 308 f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~ 383 (433)
T PRK04922 308 FTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDES 383 (433)
T ss_pred EEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCC
Confidence 7764 444 66666644 33 333333333455789999999998765433 6999999887654 332 3334567
Q ss_pred EEEcCCCCeEEEEEecCCcceEEEE
Q 011924 438 ISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+.|+|||++|+..+.++....|..+
T Consensus 384 p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 384 PSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred ceECCCCCEEEEEEecCCceEEEEE
Confidence 8999999999888776544444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=140.40 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=169.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|..+++ +|..|+.+. +..+.++|.+.++.. +++.+|...|++++| +.+|+. +++|+.|..|.+|.-.- +
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---qtLKgHKDtVycVAy--s~dGkr-FASG~aDK~VI~W~~kl-E 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---QPLKGHKDTVYCVAY--AKDGKR-FASGSADKSVIIWTSKL-E 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccc---cccccccceEEEEEE--ccCCce-eccCCCceeEEEecccc-c
Confidence 5777777 777766664 457899999876655 778899999999999 999996 99999999999998643 2
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
-+..+.|...+. |+.|+|-...|++++-+ ..-+|..... .+...+ ...
T Consensus 86 G~LkYSH~D~IQ-----------------------------CMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~k-ss~ 133 (1081)
T KOG1538|consen 86 GILKYSHNDAIQ-----------------------------CMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHK-SSS 133 (1081)
T ss_pred ceeeeccCCeee-----------------------------EeecCchHHHhhhcchh-hccccChhhh-hHHhhh-hhe
Confidence 234556788888 99999999999988653 3567876533 232222 346
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe---cCCCceEEEEEccCC-----CEEEEEcCCCeEEEEECC
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDG-----RYMATAEPADFVHVYDVK 420 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg-----~~la~~~~dg~i~iwd~~ 420 (475)
.+.+++|..||.+|+.|-.+|||.|-+.. +++...+. +...+|++++|+|.. ..+++.....++.+|.+.
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 78899999999999999999999998653 34333333 366799999999954 377778778888888864
Q ss_pred CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|+.+.......-...++.+-|+|+++++|+.|+.+
T Consensus 212 -G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 212 -GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred -ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 44444333444567899999999999999999754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=120.94 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=161.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC------CeEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDF 262 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~iw 262 (475)
+...++| +..-+++|...| .++|+++.-+....... +.+.+..+.+.+- .+++.+.|+.. ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~---~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF---IDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc---ccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEE
Confidence 3455788 566666665555 89999876433221111 1111333333212 23445555444 479999
Q ss_pred ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC-CCceEE
Q 011924 263 DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIA 341 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~ 341 (475)
|=...+++.++.+..+|. ++.++++ .++++- .+.|+||... ..+.++
T Consensus 81 DD~k~~~i~el~f~~~I~-----------------------------~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~ 128 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIK-----------------------------AVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH 128 (346)
T ss_pred ecccCcEEEEEEecccee-----------------------------eEEEcCC--eEEEEe-cCeEEEEEcCCChhhee
Confidence 977788889999999999 8888875 455553 4679999987 667777
Q ss_pred EeecCCCCeEEEEEec--CCCEEEE-EeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCCEEEEEcCCCe-EEE
Q 011924 342 SLCGHLDFSFASAWHP--NGVTFAT-GNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHV 416 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp--~g~~l~t-~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-i~i 416 (475)
.+..-..+=--++..| +..+||. |..-|.|+|-|+..... +...+.+|.+.|.+++.+.+|..||+||..|+ |+|
T Consensus 129 ~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 129 VIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred eeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 6664332222334445 4444554 34578999999976333 45788999999999999999999999999996 899
Q ss_pred EECCCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 417 YDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 417 wd~~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
||..+|..+..+.. -...|.+|+|||++.+|++++.-|++..
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence 99999998888764 2367999999999999999998887753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=122.78 Aligned_cols=111 Identities=21% Similarity=0.391 Sum_probs=88.2
Q ss_pred eEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCCceEE
Q 011924 310 HSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVA 384 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~ 384 (475)
+++|+|+|+.||+.. .+..|.+||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++ .+.+.
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~ 139 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIS 139 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEee
Confidence 999999999987653 46789999996 66676664 567789999999999999874 46799999986 56666
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcC------CCeEEEEECCCCeeEEE
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~------dg~i~iwd~~~~~~~~~ 427 (475)
.... ..++.++|+|+|++|+++.. |+.++||+.. |..+..
T Consensus 140 ~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 140 TFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 5543 34789999999999999874 6779999974 655543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-14 Score=140.13 Aligned_cols=244 Identities=17% Similarity=0.201 Sum_probs=169.7
Q ss_pred ceeEEecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEec
Q 011924 134 RNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGF 207 (475)
Q Consensus 134 r~l~~~~~~~~v~~--~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~ 207 (475)
..+.+++-...+.. +.+++|.+|+...+......-+ ..+.+.+..+|+.+.| .+.-+++++.
T Consensus 246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc------------ccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 33445554444444 4568999999776554321100 1123344557888888 3356889999
Q ss_pred CceEEEEeCCCCCceEEE---eee------cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---Ce-----ee
Q 011924 208 QGELICKHLDRPGVSFCS---RTT------YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQ-----LS 270 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~---~~~------~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---~~-----~~ 270 (475)
||.|..|+++.-...... ... ......+++++| .+.....|+.|+..|.|.--.-.. .. .+
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F--~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF--EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEee--ccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 999999987643321100 011 122234666777 888878899999999987733322 11 12
Q ss_pred -eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECC-CCceEEEeecCC
Q 011924 271 -KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSM-TGKTIASLCGHL 347 (475)
Q Consensus 271 -~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~ 347 (475)
....|.++|. ++.++|=+. .+++++ |..++||... ...++..+..+.
T Consensus 392 ~~~~~h~g~v~-----------------------------~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 392 STFITHIGPVY-----------------------------AVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred ccccccCcceE-----------------------------eeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 2223778888 999999554 444554 8999999977 677788888888
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 348 DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 348 ~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+.+++++||| ....|+++..+|.+.|||+... ..++...+-.....+.+.|++.|++|++|...|.+++|++..
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999 5678899999999999999752 346666655566778899999999999999999999999864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=130.10 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=138.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGD 325 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~ 325 (475)
.++++-..|.|++||..+++.+..|. ++..++ .+.|.. .+..+.+++.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-----------------------------~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-----------------------------GVRFISCDSPHGVISCSS 92 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCccc-----------------------------ceEEecCCCCCeeEEecc
Confidence 36677788999999999999999998 666666 677765 5677899999
Q ss_pred CCcEEEEECCCCceEEE--eecCC-CCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCCceEEEE-ecCCCceEEEE
Q 011924 326 NPDGLLVDSMTGKTIAS--LCGHL-DFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVL-KGNLGAIRSIR 397 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~--l~~h~-~~v~~~~~sp~g~~l~t~s~----dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~ 397 (475)
||+|++||+|+.....+ +.+++ .+..+++..-.++.+++|.. +-.|.+||+|+..+++..+ ..|..-|++++
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 99999999997655444 44555 34556666657888888853 6689999999977756555 45889999999
Q ss_pred EccC-CCEEEEEcCCCeEEEEECCCCe---eEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCc
Q 011924 398 YTSD-GRYMATAEPADFVHVYDVKSGY---EKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 456 (475)
Q Consensus 398 ~spd-g~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~ 456 (475)
|+|. -+.|++||.||.|.|||++... .+.....+...|..+.|..++ +.|.+-+...++
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCce
Confidence 9995 4799999999999999997653 234455677889999999887 346665655544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=151.16 Aligned_cols=234 Identities=16% Similarity=0.200 Sum_probs=173.9
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|+|..+ .|.++++|+.|..++||..++ ..|.....+|.+.++.++. +.++. +++++|+|..|++|.+..+
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et---~~~lAs~rGhs~ditdlav--s~~n~-~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMET---ARCLASCRGHSGDITDLAV--SSNNT-MIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccc---hhhhccCCCCccccchhcc--chhhh-hhhhcccCceEEEEecCCC
Confidence 46999999 799999999999999999765 3445777899999999998 76665 5999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC---------
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--------- 337 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--------- 337 (475)
.++..+. |.+.|+ +++|+|-. +.+.||++++||.+-.
T Consensus 265 ~pvsvLrghtgavt-----------------------------aiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVT-----------------------------AIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chHHHHhcccccee-----------------------------eeccCccc----cCCCCCceEeccccccccccCCCCC
Confidence 9988776 888999 88999843 6778899999987711
Q ss_pred -----ceEEEe----------ecC------CCCeEEEEEecCCCEEE-----------EEeCCCeEEEEECCCCCceEEE
Q 011924 338 -----KTIASL----------CGH------LDFSFASAWHPNGVTFA-----------TGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 338 -----~~~~~l----------~~h------~~~v~~~~~sp~g~~l~-----------t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
..+..+ .+- .-..-+++|...+-.++ ++-.+-.+.+|++.. +...+.
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~ 390 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHN 390 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhh
Confidence 011111 000 00112233433333333 333455678898866 788899
Q ss_pred EecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 386 LKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 386 ~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
+.+|...+..+.++| +-+...+++.||...|||+..|.+++.+....+.+...+||+||..++..- ..|.++-++.
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd---~hgql~i~g~ 467 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD---DHGQLYILGT 467 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC---CCCceEEecc
Confidence 999999999999999 456667899999999999999988777765577888999999998887643 2344444444
Q ss_pred ec
Q 011924 465 CR 466 (475)
Q Consensus 465 ~~ 466 (475)
+.
T Consensus 468 gq 469 (1113)
T KOG0644|consen 468 GQ 469 (1113)
T ss_pred CC
Confidence 43
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-13 Score=135.32 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=143.6
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd 263 (475)
.+.+.+| +++.|+..+.. ..|++|++...... .+ ....+...+..| +|+|+.++++.+.++ .|.+||
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l-~~~~g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LV-ASFRGINGAPSF--SPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Ee-ccCCCCccCceE--CCCCCEEEEEEeCCCCceEEEEE
Confidence 4556666 78888877643 47999999765432 12 222344456778 999998667766666 589999
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CC--cEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NP--DGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~ 340 (475)
+.+++......+..... .++|+|+|+.|+.++. .+ .|+++++.+++.
T Consensus 279 ~~~g~~~~lt~~~~~~~-----------------------------~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~- 328 (433)
T PRK04922 279 LGSRQLTRLTNHFGIDT-----------------------------EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA- 328 (433)
T ss_pred CCCCCeEECccCCCCcc-----------------------------ceEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 98877544333333334 6789999999888764 33 477778777664
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i 414 (475)
..+..+......++|+|+|++|+..+.++ .|.+||+.. +... .+.. ......+.|+|||++|+..+.+ ..|
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence 33333344555789999999998876543 699999965 4433 4432 2244578999999988877653 468
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
.++++.. .....+..+.+.+..++|+|
T Consensus 406 ~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECCC-CceEEcccCCCCCCCCccCC
Confidence 8888754 44555555667888889987
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=134.93 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=138.9
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP 327 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg 327 (475)
.|+.+++||.+.+.+- .++.-+... |.+.+. |-.|+|+|.-|++++.||
T Consensus 77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~-----------------------------~gRW~~dGtgLlt~GEDG 126 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-SARVERSISAHAAAIS-----------------------------SGRWSPDGAGLLTAGEDG 126 (737)
T ss_pred eEEEEcCCceEEEecc-cchhhhhhhhhhhhhh-----------------------------hcccCCCCceeeeecCCc
Confidence 4778889999888764 334434444 777777 889999999999999999
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE
Q 011924 328 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
.|++|. ++|-...++.....+|+|++|.|+++-++.+. .+.+.|=.+.. ...+-.+++|.+-|.++.|+|....+++
T Consensus 127 ~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 127 VIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred eEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCccccceee
Confidence 999998 67776666666778999999999887776663 45677777755 5567778999999999999999999999
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
|+.|-..+||| ..|..+..-..|.-+|++++|.|+ +..++++..
T Consensus 204 gGED~kfKvWD-~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 204 GGEDFRFKIWD-AQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred cCCceeEEeec-ccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence 99999999999 457777777789999999999999 666666543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=125.35 Aligned_cols=230 Identities=13% Similarity=0.177 Sum_probs=158.5
Q ss_pred ceeEEEEEEcC--cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAVKD--KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~~~--~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
...+.-++|.. ..+++++.|-.|++++-..... ..+.......|.+++| -|.+...|+.|.. +.|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclaw--RPlsaselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAW--RPLSASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEe--ccCCcceeeeeec-ceeEEEEcCc
Confidence 34566777744 3467788999999998665222 3555566778999999 8887776777754 5589997643
Q ss_pred -Ceeee-----------eee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEE
Q 011924 267 -YQLSK-----------HFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLL 331 (475)
Q Consensus 267 -~~~~~-----------~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~i 331 (475)
...-+ .++ ...+|+ +++|++||..+++++ .+..|.|
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVt-----------------------------smqwn~dgt~l~tAS~gsssi~i 222 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVT-----------------------------SMQWNEDGTILVTASFGSSSIMI 222 (445)
T ss_pred ccccccccccccccchhheeCCCCceee-----------------------------EEEEcCCCCEEeecccCcceEEE
Confidence 11111 111 123444 999999999999987 5678999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
||..++..+....--.+.+.-+.|||||.+|.++.-|+..++|...+.....+-. ...+.|....|+|.|++|..++..
T Consensus 223 Wdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 223 WDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred EcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 9999887665443345678889999999999999999999999765533333333 345589999999999988766543
Q ss_pred CeEEEEECCC----C-------eeEEEEe----------c---cCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 412 DFVHVYDVKS----G-------YEKEQEI----------D---FFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 412 g~i~iwd~~~----~-------~~~~~~~----------~---~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.-++|.+.- + .....+. + ..+++.+++|.|.|++|++.-..+.
T Consensus 302 -sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 302 -SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred -CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 244444321 0 0001111 0 2368999999999999998754433
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=125.88 Aligned_cols=185 Identities=16% Similarity=0.227 Sum_probs=134.3
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
.-+..++| ++.-.. ++++.+|-.|++|+-.. +....++ ....|+ |
T Consensus 99 ~dlr~~aW--hqH~~~-fava~nddvVriy~kss-t~pt~Lks~sQrnvt-----------------------------c 145 (445)
T KOG2139|consen 99 IDLRGVAW--HQHIIA-FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVT-----------------------------C 145 (445)
T ss_pred cceeeEee--chhhhh-hhhhccCcEEEEeccCC-CCCceecchhhccee-----------------------------E
Confidence 34677888 664333 77888999999999765 4444454 345666 9
Q ss_pred EEECC-CCcEEEEEeCCCcEEEEECCC-C---ce----------EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEE
Q 011924 311 SSQSP-DGKLLIIVGDNPDGLLVDSMT-G---KT----------IASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIW 374 (475)
Q Consensus 311 ~~~sp-~g~~l~~~~~dg~i~iwd~~~-~---~~----------~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iw 374 (475)
++|.| .++.|++|...| |.+|.... + +. +..-.|| .+|++++|.+||..+++++- +..|.||
T Consensus 146 lawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW 223 (445)
T KOG2139|consen 146 LAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW 223 (445)
T ss_pred EEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence 99999 556677776655 89997642 1 11 1122345 68999999999999999986 6789999
Q ss_pred ECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 375 d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
|... +..+....-..+.++-+.|||||.+|.+++.|+..++|+.........-....+.|...+|+|+|++|+.++.-
T Consensus 224 dpdt-g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 224 DPDT-GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred cCCC-CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC
Confidence 9976 44443333455688999999999999999999999999654433332333345699999999999998866543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-12 Score=111.11 Aligned_cols=229 Identities=15% Similarity=0.150 Sum_probs=157.3
Q ss_pred ccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc-eEEE---------eeecCCCCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV-SFCS---------RTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 187 ~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~-~~~~---------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
.+..+|+.|++...+|++|+. |.|+-|....... ..+. +.-.-.-..|+++.+ .|..+. ++.++.|
T Consensus 60 ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enS-i~~AgGD 135 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENS-ILFAGGD 135 (325)
T ss_pred ccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCc-EEEecCC
Confidence 355699999998888888875 9999998754332 1111 111122345888888 776666 4444489
Q ss_pred CeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 257 CGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
+.++.||+++|+..+.++ |...+. ++.-......+++|+.||++++||.+
T Consensus 136 ~~~y~~dlE~G~i~r~~rGHtDYvH-----------------------------~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYRGHTDYVH-----------------------------SVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred eEEEEEEecCCEEEEEEcCCcceee-----------------------------eeeecccCcceeecCCCccEEEEecc
Confidence 999999999999999999 888888 88876666678999999999999999
Q ss_pred CCceEEEeecCC----------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE
Q 011924 336 TGKTIASLCGHL----------DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 336 ~~~~~~~l~~h~----------~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
+++.+..+.... .+|.+++- +...+++|+. ..+.+|.++. .++..++.- .+.+..+.|-.+ .+
T Consensus 187 t~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 187 TQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD--CV 259 (325)
T ss_pred ccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccC-CCceEEEec-ccceeEeeeecc--eE
Confidence 999998876421 24555555 5567777754 5699999987 666666653 346778888654 56
Q ss_pred EEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCc
Q 011924 406 ATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 456 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~ 456 (475)
++++..+.|.-|-+. |.....+...........|+..- ++|-+++....+
T Consensus 260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~ 310 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKL 310 (325)
T ss_pred EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceee
Confidence 667766778888864 44444433323334455554332 444445554444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=117.67 Aligned_cols=293 Identities=13% Similarity=0.032 Sum_probs=194.7
Q ss_pred EEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcE-EEEEecCceEEE
Q 011924 137 VWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKL-LVAGGFQGELIC 213 (475)
Q Consensus 137 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~-lvsg~~dg~i~v 213 (475)
.+++.++.|...+++.+.+=++.+-+...++.. -.+|.-+.| +..+ |.....++.|.+
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-------------------ldki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-------------------LDKIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-------------------HHHhhheeeeccceeeeeeeeccceEEE
Confidence 367777888888888888777665443322111 013445555 4444 445567889999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee--eee-ccccEEeccCCceEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK--HFR-FPWPVNVSSSYCIILL 290 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-~~~~v~~s~~~~~l~~ 290 (475)
|++..++.. -......+.+.++.| ||+|+.++.+..-+-.|.+|.+.+.+... ..+ ....+.|+++|+..+.
T Consensus 76 wsl~Qpew~---ckIdeg~agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 76 WSLVQPEWY---CKIDEGQAGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred EEeecceeE---EEeccCCCcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeee
Confidence 999877655 233455667889999 99998888899999999999998755432 111 2345567777765531
Q ss_pred ------------------------------------------EEEeecccceE---EEEeeeeeeEEECCCCcEEEEEeC
Q 011924 291 ------------------------------------------CRLLNFMTEKV---IICLLCLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 291 ------------------------------------------~~v~d~~~~~~---~~~~~~i~~~~~sp~g~~l~~~~~ 325 (475)
+-|||---.-. ......+..++|+|.+++|++|+.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence 22333322111 122234568899999999999999
Q ss_pred CCcEEEEECCCCceE------------------------------------------------------------EEeec
Q 011924 326 NPDGLLVDSMTGKTI------------------------------------------------------------ASLCG 345 (475)
Q Consensus 326 dg~i~iwd~~~~~~~------------------------------------------------------------~~l~~ 345 (475)
|+.+++.+--+-++. +.++.
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 998887542211100 01110
Q ss_pred ------CCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 346 ------HLDFSFASAWHPNGVTFATGNQ--DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 346 ------h~~~v~~~~~sp~g~~l~t~s~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
..-.+.-++|++|..+++|-+. -..+-+||+++ .+....+ ....+|+...|+|....|+.+.....+++|
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 0113456899999999998865 35799999986 3333333 345689999999998888888777789999
Q ss_pred ECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 418 DVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 418 d~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
....... .......-.|..+.|.-+|..|+..+.|.-.
T Consensus 389 ~psg~~~-V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 389 APSGPRV-VGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred cCCCceE-EecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 9665333 3333344579999999999999999888543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=124.88 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=154.1
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe---eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
...+|+|.+| ++++.. ++.+.+...|.||.....+ ..+++. |...++
T Consensus 9 ~~~pitchAw--n~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vt-------------------------- 59 (361)
T KOG1523|consen 9 LLEPITCHAW--NSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVT-------------------------- 59 (361)
T ss_pred ccCceeeeee--cCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCccee--------------------------
Confidence 3457899999 999986 7777788899999886654 455565 888888
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-- 381 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-- 381 (475)
++.|+|..+.|++++.|..-++|....+ ++...|..+...++++.|+|.++.||+|+....|.||-++....
T Consensus 60 ---gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 60 ---GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred ---EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 9999999999999999999999998433 34556666889999999999999999999999999998864211
Q ss_pred -eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC-----C-------------CeeEEEEeccCCCeEEEEEcC
Q 011924 382 -SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK-----S-------------GYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 382 -~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~l~fsp 442 (475)
..+.-+.+.+.|+++.|+|++-.|++|+.|+..+||..- . |....++....|.+.++.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 223334566789999999999999999999999999641 1 111222223457899999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+|..|+-.+.|.++.
T Consensus 217 sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVS 231 (361)
T ss_pred CCCEeeEecCCCceE
Confidence 999999888887653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-12 Score=129.52 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=145.1
Q ss_pred eEEEEEE--cCcEEEEEec---CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe--EEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~--v~iwd 263 (475)
.+.+.+| +|+.|+..+. +..|.+|++...... ....+.+.+....| +|+|+.++++.+.++. |.+||
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEE--CCCCCEEEEEEecCCCceEEEEE
Confidence 5677777 8888887653 468999999765432 22234455667778 9999986777776665 77778
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-C--CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d--g~i~iwd~~~~~~~ 340 (475)
+.+++......+..... ..+|+|+|+.|+.++. + ..|+++|+.++..
T Consensus 277 ~~~~~~~~Lt~~~~~~~-----------------------------~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~- 326 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDT-----------------------------SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP- 326 (435)
T ss_pred CCCCceEEccCCCCccC-----------------------------ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence 88776644333444444 7799999999988764 2 3688889876554
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC------
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------ 411 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d------ 411 (475)
..+..+...+....|+|+|+.|+..+.+ ..|.+||+.. + ....+.. ...+..+.|+|||++|+..+.+
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 4454445566778999999999887653 3688888753 2 3344433 2346788999999998876543
Q ss_pred CeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 412 DFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
..|.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 3688889876544 3333 4566788888873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-13 Score=119.39 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=102.4
Q ss_pred eEEECCCCcEEEEEeC----------CCcEEEEECC-CCceEEEeec-CCCCeEEEEEecCCCEEEEE--eCCCeEEEEE
Q 011924 310 HSSQSPDGKLLIIVGD----------NPDGLLVDSM-TGKTIASLCG-HLDFSFASAWHPNGVTFATG--NQDKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~----------dg~i~iwd~~-~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~--s~dg~v~iwd 375 (475)
.+.|+|+|..|++-.. -+...||.++ .+.++..+.- ..++|.+++|+|+|+.||+. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 6789999988876533 1334455543 2334444543 34579999999999987654 4577999999
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
++ .+.+..+. ...+..+.|+|+|++|++|+.+ |.|.+||+++.+.+.... | ..++.++|||||++|++++.
T Consensus 90 ~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 90 VK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred Cc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 96 56666664 4577899999999999998753 679999999877765543 3 34789999999999999876
Q ss_pred c
Q 011924 453 D 453 (475)
Q Consensus 453 D 453 (475)
.
T Consensus 164 ~ 164 (194)
T PF08662_consen 164 S 164 (194)
T ss_pred c
Confidence 4
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-12 Score=131.22 Aligned_cols=257 Identities=18% Similarity=0.152 Sum_probs=180.8
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
++++++.. ....|.|+...+.. |...+.+|..++..+.+..++.....+.+++.+|.|++||...+.+++++....
T Consensus 27 D~k~l~~~-~~~~V~VyS~~Tg~---~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~ 102 (792)
T KOG1963|consen 27 DAKFLFLC-TGNFVKVYSTATGE---CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL 102 (792)
T ss_pred CCcEEEEe-eCCEEEEEecchHh---hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence 56555554 56789999987644 346888999999999995555443457899999999999999999988887433
Q ss_pred cEE---eccCCc---eEE-----EEEEeecccceEEE--------Eee-----------eeeeEEECCCCcEEEEEeCCC
Q 011924 278 PVN---VSSSYC---IIL-----LCRLLNFMTEKVII--------CLL-----------CLQHSSQSPDGKLLIIVGDNP 327 (475)
Q Consensus 278 ~v~---~s~~~~---~l~-----~~~v~d~~~~~~~~--------~~~-----------~i~~~~~sp~g~~l~~~~~dg 327 (475)
++. +.+..- ..+ ..++....+.+... +.. .-.++.+++.|...+.... .
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~-~ 181 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM-C 181 (792)
T ss_pred ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe-e
Confidence 332 111100 011 01111111111100 000 1137788888887777644 5
Q ss_pred cEEEEECCCCceEEEe----ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---CCceEEEEecCCCceEEEEEcc
Q 011924 328 DGLLVDSMTGKTIASL----CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN---LSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l----~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~sp 400 (475)
.+++|....+...... ..|.-.+.+.++||+++++|+|..||.|.+|.--. .......+.-|...|.+++|++
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~ 261 (792)
T KOG1963|consen 182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS 261 (792)
T ss_pred eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence 6889988765411111 23677789999999999999999999999996432 1224556666888999999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
+|.+|++|+..+.+.+|.+.+++ ..-+....++|..+.+|||+.+.++...|..+.-+.
T Consensus 262 ~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 262 DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 99999999999999999999987 444455678999999999999999999998875443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-12 Score=130.13 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=139.0
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE--
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD-- 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd-- 263 (475)
.+.+.+| +|+.|+..+.. ..|.+|++...... .+. ...+.+.+..| +|+|+.++++.+.++...+|.
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l~-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---VVA-NFKGSNSAPAW--SPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---Eee-cCCCCccceEE--CCCCCEEEEEEccCCCceEEEEE
Confidence 4556666 88888876643 46999999765433 221 22344567778 999998666777888766665
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEE--ECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLV--DSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iw--d~~~~~~~ 340 (475)
+..+.......+..... ...|+|||+.|+.++. .+...|| ++.+++.
T Consensus 271 ~~~~~~~~lt~~~~~~~-----------------------------~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~- 320 (427)
T PRK02889 271 ADGSGLRRLTQSSGIDT-----------------------------EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA- 320 (427)
T ss_pred CCCCCcEECCCCCCCCc-----------------------------CeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-
Confidence 44444322222333334 6789999999887664 3455555 4445543
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i 414 (475)
..+..+.......+|+|+|++|+..+.++ .|.+||+.. +.. ..+... .....+.|+|||++|+.++.++ .+
T Consensus 321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDT-TRDESPSFAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCC-CCccCceECCCCCEEEEEEecCCCEEE
Confidence 33332333455689999999999877654 699999965 443 333322 2346789999999998877543 46
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+.++ +|.....+..+.+.+...+|+|-
T Consensus 398 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 398 AAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 67776 45555566667788899999984
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-12 Score=127.37 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=175.6
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEE
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELIC 213 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~v 213 (475)
+.++.+.+....+...+..+..|....+. .......- . ..+.-...+.++++.++++++|..+|+|.+
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~----~-------~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDI----T-------VHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchh----h-------hhhcccceeEEeccccceEEEeccCCcEEE
Confidence 44556666666666777888888866544 11111100 0 011111233444449999999999999999
Q ss_pred EeCCC-CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEE
Q 011924 214 KHLDR-PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 214 w~~~~-~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~ 292 (475)
|.--. ........+++=|...|+++.| +++|.+ |++|+..|.+-+|.+.+++...--+...++.
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~f--S~~G~~-LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~------------ 296 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSF--SSDGAY-LLSGGREGVLVLWQLETGKKQFLPRLGSPIL------------ 296 (792)
T ss_pred EeccccccccccceEEEecccccceeEE--ecCCce-EeecccceEEEEEeecCCCcccccccCCeeE------------
Confidence 97433 3334445666778889999999 999997 9999999999999999988333333677888
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-----------CCCCeEEEEEecCCCE
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-----------HLDFSFASAWHPNGVT 361 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-----------h~~~v~~~~~sp~g~~ 361 (475)
.+.+|||+.+.++...|..|.+....+.....++.| ..+-.+.++++|..+.
T Consensus 297 -----------------~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 297 -----------------HIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred -----------------EEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 999999999999999999999987754332222222 1223344555664444
Q ss_pred EEEEeCCCeEEEEECCCCC-------------------------------------------------------------
Q 011924 362 FATGNQDKTCRIWDLRNLS------------------------------------------------------------- 380 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~------------------------------------------------------------- 380 (475)
++-.+..|+|.+||+-+..
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 5555555555555543210
Q ss_pred -c----e-EEEEecCCCceEEEEEcc-CCC-EEEEEcCCCeEEEEECCCC---------e-eEEEEeccCCCeEEEEEcC
Q 011924 381 -E----S-VAVLKGNLGAIRSIRYTS-DGR-YMATAEPADFVHVYDVKSG---------Y-EKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 381 -~----~-~~~~~~~~~~v~~l~~sp-dg~-~la~~~~dg~i~iwd~~~~---------~-~~~~~~~~~~~i~~l~fsp 442 (475)
. + .....+|...+...+|.+ ... .+++++.||.++||-+... . +...-.-|..++..++||.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 0 0 111123444444444433 333 7889999999999987322 1 2222223678999999999
Q ss_pred CCCeEEEEE
Q 011924 443 DTESLFIGV 451 (475)
Q Consensus 443 dg~~l~~~~ 451 (475)
||..|+++-
T Consensus 520 dGslla~s~ 528 (792)
T KOG1963|consen 520 DGSLLAVSF 528 (792)
T ss_pred CCcEEEEec
Confidence 998777663
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=134.03 Aligned_cols=233 Identities=11% Similarity=0.098 Sum_probs=159.2
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC-CC----Ceeeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GK----YQLSKH 272 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~-~~----~~~~~~ 272 (475)
-...++++...-.|+|||...+...............|+.+.+..-.+. .++++|+.||.||||+- .. .+++..
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEecccccccCCceeEEe
Confidence 4556777777789999999876644222222233456888887644444 46999999999999963 22 223322
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeE
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSF 351 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h~~~v~ 351 (475)
+..-......+.+ ++ --+.|.....+|+++|+-..|+|||....+.++.+.. ....++
T Consensus 1154 w~~Ls~~~~~~r~------------~~---------~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARG------------TG---------LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred eccccccCccCCC------------CC---------eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 2211100000000 00 0457888666777777788999999988877776653 334455
Q ss_pred EEEEe-cCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCc--eEEEEEccCCC-EEEEEcCCCeEEEEECCCCeeE
Q 011924 352 ASAWH-PNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGA--IRSIRYTSDGR-YMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 352 ~~~~s-p~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~--v~~l~~spdg~-~la~~~~dg~i~iwd~~~~~~~ 425 (475)
++.-+ +.|+.+++|..||.|++||.|.... .+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.....
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence 55433 2689999999999999999987544 77888888876 99999998774 5999999999999999874211
Q ss_pred --EEEeccC--C-CeEEEEEcCCCCeEEEEEe
Q 011924 426 --EQEIDFF--G-EISGISFSPDTESLFIGVW 452 (475)
Q Consensus 426 --~~~~~~~--~-~i~~l~fspdg~~l~~~~~ 452 (475)
.++..|. | .++++..++....||+|+.
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 1222232 4 5999999999999999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=134.08 Aligned_cols=254 Identities=16% Similarity=0.140 Sum_probs=173.0
Q ss_pred CCCCCCCCCCCccccccce--eEEEEEE---cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEe
Q 011924 172 HVAPSEKHPGSLLEGFTQT--QVSTLAV---KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYG 242 (475)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~--~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~ 242 (475)
...+.+...|.++.+++.+ .|..++. ++.++++|+.||+|++|++.... ...+..+..-..+.+.++.+
T Consensus 1029 ~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-- 1106 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-- 1106 (1431)
T ss_pred CCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe--
Confidence 3444455667777777653 5666666 55899999999999999985432 22333333436778889988
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeee-------eeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLS-------KHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~-------~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.++++. ++.++.||.|++.++...... +... ..+.+. ..-++
T Consensus 1107 ~~~~~~-~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv----------------------------~m~a~ 1157 (1431)
T KOG1240|consen 1107 CGNGDQ-FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVV----------------------------SMHAF 1157 (1431)
T ss_pred ccCCCe-EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceE----------------------------Eeecc
Confidence 888887 888899999999998763211 1111 111111 02223
Q ss_pred CC-CCc-EEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-
Q 011924 314 SP-DGK-LLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG- 388 (475)
Q Consensus 314 sp-~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~- 388 (475)
.. .+. .|+.+...+.|..||+++.....+++. ..+.|++++.+|.++++++|+..|.+.+||+|- +.++..+..
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc
Confidence 22 333 778888889999999997766665553 347899999999999999999999999999986 666666653
Q ss_pred CCCceEEEEEccCC---CEEEEEc--CCCeEEEEECCCCeeEEEEeccC-----------------CC--eEEEEEcCCC
Q 011924 389 NLGAIRSIRYTSDG---RYMATAE--PADFVHVYDVKSGYEKEQEIDFF-----------------GE--ISGISFSPDT 444 (475)
Q Consensus 389 ~~~~v~~l~~spdg---~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~-----------------~~--i~~l~fspdg 444 (475)
+..+++.+..+|-- ...++++ ..+.|.+|++.+|.+...+.... .. .....+..-+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 44678888777732 3555444 47889999999997666554321 11 1122333445
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
..+++|+.|..++
T Consensus 1317 ~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIR 1329 (1431)
T ss_pred ceeeecCCcccee
Confidence 6788888888776
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-11 Score=114.70 Aligned_cols=283 Identities=17% Similarity=0.169 Sum_probs=170.1
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
.+++|.+.+..+.+....+...+. .+....++.+++++++.+.+|.|.++|+.+.+.......
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~----------------~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~- 76 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA----------------PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV- 76 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT----------------EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC----------------ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-
Confidence 458889999888776655543211 011122233899999999999999999998875532222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-----------ccEEeccCCceEE-------E
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-----------WPVNVSSSYCIIL-------L 290 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~~v~~s~~~~~l~-------~ 290 (475)
+ .....+++ |++|++++++....+.+.++|.++.+.++.+... ..+..++...... .
T Consensus 77 -G--~~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 77 -G--GNPRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp -S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred -C--CCcceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 2 23466777 9999997777788999999999999988877621 1233455555332 1
Q ss_pred EEEeecccceEE-----EEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeec----CCCCeEEE-------
Q 011924 291 CRLLNFMTEKVI-----ICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCG----HLDFSFAS------- 353 (475)
Q Consensus 291 ~~v~d~~~~~~~-----~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~----h~~~v~~~------- 353 (475)
+-+.|....+.. ..........|+|++++++++ ..+..+-++|..+++.+..+.. |..++..+
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEE
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcce
Confidence 223343332221 112245678999999988775 4567899999999888766542 33333332
Q ss_pred EEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE----cCCCeEEEEECCCCeeEEE
Q 011924 354 AWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA----EPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 354 ~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~----~~dg~i~iwd~~~~~~~~~ 427 (475)
.|.. .+...++.-....+.+||..+ .+.++.+....++ ..++-+|++++|.+. ...+.|.|+|.++.+....
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-
T ss_pred EEeeccccceecccccCCccccchhhc-CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE
Confidence 2322 222222222233566788876 7889999887666 688899999999988 3457999999999866655
Q ss_pred EeccC-CCeEEEEEcCCCCeEEEEEecCC
Q 011924 428 EIDFF-GEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 428 ~~~~~-~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+.... ..+..+.|+++|+.+.++.|+..
T Consensus 310 i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 310 ITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 54322 35999999999999999999876
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-12 Score=124.81 Aligned_cols=211 Identities=22% Similarity=0.215 Sum_probs=142.9
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
..|.+++....... ....+...+....| +|+|+.++++...+ ..|++|++.+++..........+.
T Consensus 170 ~~l~~~d~~g~~~~----~l~~~~~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~------ 237 (417)
T TIGR02800 170 YELQVADYDGANPQ----TITRSREPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG------ 237 (417)
T ss_pred ceEEEEcCCCCCCE----EeecCCCceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc------
Confidence 35777776533322 22345556777778 99999855444332 479999998876554444445555
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCC--CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDN--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~d--g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|+|+.|+.. +.+ ..|++|++.+++. ..+..+.......+|+|+|+.|+
T Consensus 238 -----------------------~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 238 -----------------------APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred -----------------------ceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEE
Confidence 77999999987754 333 4689999887754 44554555556789999999887
Q ss_pred EEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEE
Q 011924 364 TGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 364 t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
..+. .+ .|.++|+.. ++ ...+..+...+..+.|+|+|++|+.++.++ .|.+||+.++... .+.. ......
T Consensus 294 ~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~ 369 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDES 369 (417)
T ss_pred EEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCC
Confidence 7654 33 577778764 33 344444455677889999999999887765 7999999876442 2222 233456
Q ss_pred EEEcCCCCeEEEEEecCCcceE
Q 011924 438 ISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~l 459 (475)
..|+|||++|+.++.++....+
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEE
Confidence 7899999999988877655433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=132.99 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=179.1
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEE
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw 214 (475)
++..+.++.+ -..+.+-.++..+.+...-+++- -.|..+.| +.++++++ ...-++||
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------Etv~Dv~~LHneq~~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------ETVRDVTFLHNEQFFAVA-QKKYVYVY 196 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehh-------------------hhhhhhhhhcchHHHHhh-hhceEEEe
Confidence 4433333333 23455666666666554444332 24667777 45555554 66778888
Q ss_pred eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEE
Q 011924 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v 293 (475)
|-...+ ..|.+. ...|..+.| -|.- ++|++++..|.++--|+.+|+++..+. ..+.+.
T Consensus 197 D~~GtE-lHClk~----~~~v~rLeF--LPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~------------- 255 (545)
T KOG1272|consen 197 DNNGTE-LHCLKR----HIRVARLEF--LPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD------------- 255 (545)
T ss_pred cCCCcE-Eeehhh----cCchhhhcc--cchh-heeeecccCCceEEEeechhhhhHHHHccCCccc-------------
Confidence 854322 333322 345788888 6664 578999999999999999999998887 566777
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
.++-+|-...+-+|..+|+|.+|......++..+-.|.++|.++++.|+|+|+||++.|..|+|
T Consensus 256 ----------------vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 256 ----------------VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred ----------------hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence 7889998889999999999999999999999888899999999999999999999999999999
Q ss_pred EECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC-CC--CeeEEEEecc--CCCeEEEEEcCCCCeEE
Q 011924 374 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-KS--GYEKEQEIDF--FGEISGISFSPDTESLF 448 (475)
Q Consensus 374 wd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~-~~--~~~~~~~~~~--~~~i~~l~fspdg~~l~ 448 (475)
||+|+..++ .++.. .-+...++||..| .||.+ ....|.||-- -. +....-+..| .+.|.++.|.|-...|-
T Consensus 320 WDlR~~~ql-~t~~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLG 395 (545)
T KOG1272|consen 320 WDLRNFYQL-HTYRT-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLG 395 (545)
T ss_pred eeecccccc-ceeec-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeee
Confidence 999986544 44433 3356788898766 44444 4456999952 22 1111222233 47899999999766665
Q ss_pred EEE
Q 011924 449 IGV 451 (475)
Q Consensus 449 ~~~ 451 (475)
+|-
T Consensus 396 IGH 398 (545)
T KOG1272|consen 396 IGH 398 (545)
T ss_pred ccc
Confidence 553
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=129.52 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=151.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+.+.|.||+| +|.+|++|+.|-.+.|||.-..+.. ..+-.+|.+.|-++.|....++ .++++|..|..|++||+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCC-eEEEeccCcceEEEEecc
Confidence 3357999999 9999999999999999998755544 4556689999999999755454 469999999999999997
Q ss_pred CCe----------eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEE
Q 011924 266 KYQ----------LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVD 333 (475)
Q Consensus 266 ~~~----------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd 333 (475)
..+ ..+.+. |...|. .++..|++ ..+.+++.||+|+-+|
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVK-----------------------------ria~~p~~PhtfwsasEDGtirQyD 176 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVK-----------------------------RIATAPNGPHTFWSASEDGTIRQYD 176 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhh-----------------------------heecCCCCCceEEEecCCcceeeec
Confidence 421 111222 444555 77888877 7889999999999999
Q ss_pred CCCCce-------EEE---eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCC-----------------ceEEE
Q 011924 334 SMTGKT-------IAS---LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS-----------------ESVAV 385 (475)
Q Consensus 334 ~~~~~~-------~~~---l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~-----------------~~~~~ 385 (475)
++.... ... +....-...|+..+| +..+||+|+.|-..++||.|... .++..
T Consensus 177 iREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y 256 (758)
T KOG1310|consen 177 IREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY 256 (758)
T ss_pred ccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe
Confidence 985321 111 111223467899999 67899999999999999954211 12333
Q ss_pred Eec-CC-----------CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 386 LKG-NL-----------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 386 ~~~-~~-----------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
+.. |. ..++-+.|+|+|..|++.-....|+++|+..++.+..+.
T Consensus 257 f~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 257 FSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 321 11 125678899999877766666689999998877655544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=122.89 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=139.8
Q ss_pred EEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEEC
Q 011924 192 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 264 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~ 264 (475)
+.+.+| +|++|+.+... ..|++|++.+..... ...+.+.+.++.| +|+|+.++++.+.++ .|.+|++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEE--CCCCCEEEEEECCCCCccEEEEEC
Confidence 444455 88888877644 479999997654331 1223444566777 999998666665554 5888898
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC---CcEEEEECCCCceEE
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~ 341 (475)
.+++......+..... ..+|+|+|+.|+.++.. ..|+++++.+++. .
T Consensus 266 ~~~~~~~l~~~~~~~~-----------------------------~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~ 315 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDT-----------------------------EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R 315 (417)
T ss_pred CCCCEEECCCCCCCCC-----------------------------CEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E
Confidence 8766544333433334 66899999988876543 2688888877664 4
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVH 415 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~ 415 (475)
.+..+...+..+.|+|+|++++.++.++ .|.+||+.. +. ...+... .......|+|+|++|+.++.++ .+.
T Consensus 316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 4554566777889999999999988876 789999875 33 3333332 2345678999999988877654 466
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+.+. ++.....+....+.+..++|+
T Consensus 393 ~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 393 LVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred EEEC-CCceeeECCCCCCCcCCCCCC
Confidence 6664 344455554445666666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=117.74 Aligned_cols=234 Identities=15% Similarity=0.104 Sum_probs=169.3
Q ss_pred eeEEEEEE--c--CcEEEEEecCceEEEEeCCCCCceEE---EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 190 TQVSTLAV--K--DKLLVAGGFQGELICKHLDRPGVSFC---SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 190 ~~v~~l~~--~--~~~lvsg~~dg~i~vw~~~~~~~~~~---~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
..|+.++| + ...|+..+.+-.+....+...+.... ........+.|..+.. .+| . |++|-.+|.+.+|
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg-~-Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG-T-LITCVSSGNLQVR 130 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC-E-EEEEecCCcEEEE
Confidence 36777777 3 33444444555555555443332211 1122333445555544 244 3 7777889999999
Q ss_pred ECCCCe----eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCC--CcEEEEECC
Q 011924 263 DMGKYQ----LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDN--PDGLLVDSM 335 (475)
Q Consensus 263 d~~~~~----~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d--g~i~iwd~~ 335 (475)
..+.+. ....+....++. .+.-.|.. ..+++||.. ..+.|||+.
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~-----------------------------~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLY-----------------------------DVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred eccCCccccccceeeecCCcee-----------------------------eeccCCCCCceEecCchhcccceeeeecc
Confidence 987443 222233333444 55666644 455668877 789999999
Q ss_pred CCceEEEeecC---------CCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 336 TGKTIASLCGH---------LDFSFASAWHPN--GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 336 ~~~~~~~l~~h---------~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
+.+++.+-+.- .-+++++.|-|. ...||+++.-+.||+||.+...+|+..+.-...+++++...|+|++
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence 88665544321 235678899886 8899999999999999999888899999988889999999999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++|..-+.+..||++++..+.. +.+..|.|++|..+|.+++|++++-|+.++
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence 99999999999999999988776 677889999999999999999999997664
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-11 Score=121.03 Aligned_cols=210 Identities=18% Similarity=0.139 Sum_probs=131.8
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeE--EEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccC
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVH--FTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSS 284 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~--l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~ 284 (475)
..|.+.|.+..... .++. .......-.| ||+|+.+ ++++..++ .|.+.++.+++..+....+....
T Consensus 165 ~~l~~~d~dG~~~~---~lt~-~~~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~---- 234 (428)
T PRK01029 165 GELWSVDYDGQNLR---PLTQ-EHSLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL---- 234 (428)
T ss_pred ceEEEEcCCCCCce---Eccc-CCCCcccceE--ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc----
Confidence 45666666543332 2222 3334455677 9999752 23444444 57777888776544443444444
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CC--cEE--EEECCC---CceEEEeecCCCCeEEEEEe
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NP--DGL--LVDSMT---GKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg--~i~--iwd~~~---~~~~~~l~~h~~~v~~~~~s 356 (475)
..+|||||+.|+..+. .| .++ +|++.. ++......++.......+|+
T Consensus 235 -------------------------~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 235 -------------------------MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred -------------------------ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 6789999999887653 22 343 467664 23333333333445678999
Q ss_pred cCCCEEEEEe-CCCeEEEEE--CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEec
Q 011924 357 PNGVTFATGN-QDKTCRIWD--LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 357 p~g~~l~t~s-~dg~v~iwd--~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~ 430 (475)
|||+.|+..+ .+|...||. +...+.....+......+....|||||+.|+..+.. ..|.+||+.++... .+..
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~ 368 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTT 368 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccC
Confidence 9999888766 466555554 432223345555555567789999999998876543 46999999888654 3333
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecC
Q 011924 431 FFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
....+..+.|+|||+.|+....++
T Consensus 369 ~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 369 SPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCC
Confidence 345678899999999998765543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-11 Score=121.68 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=137.1
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
.|.++|.+..... ....+...+....| +|+|+.+++++..+ ..|.+|++.+++............
T Consensus 180 ~l~~~d~~g~~~~----~l~~~~~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~------- 246 (430)
T PRK00178 180 TLQRSDYDGARAV----TLLQSREPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG------- 246 (430)
T ss_pred EEEEECCCCCCce----EEecCCCceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-------
Confidence 4666666543322 22234556777888 99999855554333 368899998876544333344444
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
..+|+|+|+.|+.. ..++ .|++||+.+++. ..+..+........|+|+|+.|+.
T Consensus 247 ----------------------~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f 303 (430)
T PRK00178 247 ----------------------APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYF 303 (430)
T ss_pred ----------------------CeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEE
Confidence 67899999988754 3344 688899987764 446556666677899999998876
Q ss_pred EeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-C--eEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 365 GNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 365 ~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.+. ++ .|.++|+.. ++. ..+..........+|+|+|++|+..+.. + .|.+||+.++... .+. ........
T Consensus 304 ~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p 379 (430)
T PRK00178 304 TSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESP 379 (430)
T ss_pred EECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCc
Confidence 654 33 577778754 332 3332222234467899999999877653 2 5888999887543 232 22233467
Q ss_pred EEcCCCCeEEEEEecCCcceEE
Q 011924 439 SFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~ll 460 (475)
.|+|||+.|+.++.++....+.
T Consensus 380 ~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 380 SVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eECCCCCEEEEEEecCCceEEE
Confidence 8999999999887765444333
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-14 Score=138.21 Aligned_cols=267 Identities=15% Similarity=0.167 Sum_probs=174.5
Q ss_pred cceeeecccceeE-EecCCCeEEEecC-CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc
Q 011924 125 KSTILHFQLRNLV-WATSKHDVYLMSH-FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK 200 (475)
Q Consensus 125 ~~~~~h~~lr~l~-~~~~~~~v~~~~~-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~ 200 (475)
+....|+....|+ +-.+++.|++.++ ..+++|+..+... +....| +...|+.+++ +.-
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rG----------------hs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRG----------------HSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCC----------------Cccccchhccchhhh
Confidence 3344565544443 5667778888655 6788999655432 223333 2246888888 566
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEE
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVN 280 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~ 280 (475)
++++++.|..|++|.+...... .++.+|.+.|++|+| +|-. +.+.||++++||.+ .... ...+.|..
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pv---svLrghtgavtaiaf--sP~~-----sss~dgt~~~wd~r-~~~~--~y~prp~~ 312 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPV---SVLRGHTGAVTAIAF--SPRA-----SSSDDGTCRIWDAR-LEPR--IYVPRPLK 312 (1113)
T ss_pred hhhhcccCceEEEEecCCCchH---HHHhccccceeeecc--Cccc-----cCCCCCceEecccc-cccc--ccCCCCCC
Confidence 7888999999999999887665 678899999999999 7753 66799999999986 1111 11222222
Q ss_pred eccCCceE--EEEEEeec-ccceEEEE--eeeeeeEEECCCC-----------cEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 281 VSSSYCII--LLCRLLNF-MTEKVIIC--LLCLQHSSQSPDG-----------KLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 281 ~s~~~~~l--~~~~v~d~-~~~~~~~~--~~~i~~~~~sp~g-----------~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
|....... .....|+. .++..-.. .-.+.+++|...+ ...+++-.+-.+.+|++.+|...+.+.
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ 392 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM 392 (1113)
T ss_pred cccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc
Confidence 21110000 00011111 11100000 0001112222222 233444456678899999999999999
Q ss_pred cCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 345 ~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+|.+.++.+.+|| +.+...+++.||...|||+-. +.+++......+.+..-+||++|..++....-|.+.|.....+.
T Consensus 393 ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 393 GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccccceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999999999999 777888999999999999977 55555444335567788999999999988888899998865543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-10 Score=107.04 Aligned_cols=243 Identities=15% Similarity=0.151 Sum_probs=150.1
Q ss_pred EEEEcCcEEEEEec----CceEEEEeCCCC-CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-C
Q 011924 194 TLAVKDKLLVAGGF----QGELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-Y 267 (475)
Q Consensus 194 ~l~~~~~~lvsg~~----dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~ 267 (475)
+++.++++|++... .|.|..|.+... +.................+++ +|+++.++++...+|+|.++++.. +
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCc
Confidence 34448888888766 579999998876 332222222223334567888 999998666666799999999976 4
Q ss_pred eeeee---eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCc--eE-
Q 011924 268 QLSKH---FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK--TI- 340 (475)
Q Consensus 268 ~~~~~---~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~--~~- 340 (475)
.+... +.+... . +. ... +......++.++|+|+++++.. ....|.+|++.... ..
T Consensus 121 ~l~~~~~~~~~~g~-g--~~-----------~~r----q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 121 SLGEVVQTVRHEGS-G--PN-----------PDR----QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EEEEEEEEEESEEE-E--SS-----------TTT----TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred ccceeeeecccCCC-C--Cc-----------ccc----cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 44332 211100 0 00 000 0000111789999999988874 23468999987554 32
Q ss_pred -EEee-cCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-Cc--eEEEEecC------CCceEEEEEccCCCEEEEE
Q 011924 341 -ASLC-GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-SE--SVAVLKGN------LGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 341 -~~l~-~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-~~--~~~~~~~~------~~~v~~l~~spdg~~la~~ 408 (475)
..+. ......+.++|+|++++++..+. +++|.++++... +. .+..+... ......++++|||++|+++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 2232 23456889999999998877765 788999998721 22 22222211 1257789999999998876
Q ss_pred c-CCCeEEEEECC--CCee--EEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 409 E-PADFVHVYDVK--SGYE--KEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 409 ~-~dg~i~iwd~~--~~~~--~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
. ..+.|.+|++. ++.. +..+.......+.++++|+|++|+++..+...
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 5 46789999993 3332 22222223458999999999999999766544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-11 Score=120.99 Aligned_cols=210 Identities=18% Similarity=0.137 Sum_probs=133.5
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
.|.++|.+..... ........+....| +|+|+.++.+...++ .|.+||+.+++.......+....
T Consensus 199 ~l~i~d~dG~~~~----~l~~~~~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~------- 265 (448)
T PRK04792 199 QLMIADYDGYNEQ----MLLRSPEPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING------- 265 (448)
T ss_pred EEEEEeCCCCCce----EeecCCCcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-------
Confidence 5666666543322 22334556778888 999998555554443 58888998776533322333333
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
..+|+|+|+.|+.. +.++ .|+++|+.+++. ..+..+.......+|+|+|+.|+.
T Consensus 266 ----------------------~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f 322 (448)
T PRK04792 266 ----------------------APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIF 322 (448)
T ss_pred ----------------------CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEE
Confidence 67899999988764 4455 488889887764 455556556678899999998877
Q ss_pred EeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-C--eEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 365 GNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 365 ~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.+. ++ .|.++|+.. ++ ...+..........+|+|||++|+..+.. + .|.++|+.++... .+... ......
T Consensus 323 ~s~~~g~~~Iy~~dl~~-g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~p 398 (448)
T PRK04792 323 TSERGGKPQIYRVNLAS-GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESP 398 (448)
T ss_pred EECCCCCceEEEEECCC-CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCc
Confidence 654 33 466667754 33 33332222233467899999998876553 3 4666788877543 22222 223356
Q ss_pred EEcCCCCeEEEEEecCCcceE
Q 011924 439 SFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~l 459 (475)
.|+|||+.|+..+.++....+
T Consensus 399 s~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred eECCCCCEEEEEEecCCceEE
Confidence 899999999887766543333
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-13 Score=125.76 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=130.8
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
..+.+|.+-|++++| +.+|.. |++||.|-.+.|||.-..+++..+. |...|-
T Consensus 44 ~eL~GH~GCVN~LeW--n~dG~l-L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF----------------------- 97 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEW--NADGEL-LASGSDDTRLIVWDPFEYKLLHSISTGHTANIF----------------------- 97 (758)
T ss_pred hhhccccceecceee--cCCCCE-EeecCCcceEEeecchhcceeeeeeccccccee-----------------------
Confidence 456789999999999 999986 9999999999999998877777665 666666
Q ss_pred EeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCC----------ceEEEeecCCCCeEEEEEecCC-CEEEEEeCCCe
Q 011924 304 CLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTG----------KTIASLCGHLDFSFASAWHPNG-VTFATGNQDKT 370 (475)
Q Consensus 304 ~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~----------~~~~~l~~h~~~v~~~~~sp~g-~~l~t~s~dg~ 370 (475)
++.|-| +.+++++|..|..|+++|+... ...+.+..|...|..++-.|++ +.+.+++.||+
T Consensus 98 ------svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 98 ------SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred ------EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999998 6678889999999999999742 2344556799999999999977 89999999999
Q ss_pred EEEEECCCCCceEEEEe---------cCCCceEEEEEccCC-CEEEEEcCCCeEEEEEC
Q 011924 371 CRIWDLRNLSESVAVLK---------GNLGAIRSIRYTSDG-RYMATAEPADFVHVYDV 419 (475)
Q Consensus 371 v~iwd~~~~~~~~~~~~---------~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~ 419 (475)
++-+|+|.+..+..... ...-...++..+|.. .+||+|+.+-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 99999997433322221 112345688899955 58999999999999994
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=109.02 Aligned_cols=215 Identities=14% Similarity=0.085 Sum_probs=146.6
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCC
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSY 285 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~ 285 (475)
..|.+.++++...+......+.....+.+..+.|..-+ +|...++-+-..|.|.++.........+++.-.....+..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~- 122 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV- 122 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe-
Confidence 35778888876655332112222233445555553223 4444466666778888887654444444432211110000
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEEec-CCCEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFASAWHP-NGVTF 362 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~h~~~v~~~~~sp-~g~~l 362 (475)
. .-++.|++.+..++++-.+|.+.+.+...+.. ++.++.|.-.++.+.|+. +.+++
T Consensus 123 --------------------~-~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 123 --------------------E-ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred --------------------e-eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceE
Confidence 0 01788999999999999999999776554443 447889999999999987 66899
Q ss_pred EEEeCCCeEEEEECCCCCceEEE-EecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
.+|+.|+.+.-||+|.+++.+.. .+-|...|.++.-+| .+.+|++|+.|..|++||.++..++.......|.|+.+.+
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence 99999999999999965554444 556788899998887 5789999999999999999864433333345588999999
Q ss_pred cCC
Q 011924 441 SPD 443 (475)
Q Consensus 441 spd 443 (475)
+|.
T Consensus 262 ~p~ 264 (339)
T KOG0280|consen 262 HPE 264 (339)
T ss_pred cch
Confidence 994
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=119.59 Aligned_cols=196 Identities=12% Similarity=0.111 Sum_probs=148.1
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC------Ceeeeeee--ccccEEeccCCceEEEEE
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------YQLSKHFR--FPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~------~~~~~~~~--~~~~v~~s~~~~~l~~~~ 292 (475)
..+|.+-..+|.+-|++|.| +.++++ |++|+.|..+++|.+.. .+++.... |...|-
T Consensus 45 R~~~qKD~~~H~GCiNAlqF--S~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF------------ 109 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQF--SHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIF------------ 109 (609)
T ss_pred cchhhhhhhhhccccceeee--ccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceE------------
Confidence 34556667789999999999 889886 99999999999999853 23333332 223444
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC---CCeEEEEEecCCCEEEEEeCCC
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL---DFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~---~~v~~~~~sp~g~~l~t~s~dg 369 (475)
|++|+...+.|.+|+.+++|.+-|+.+.+.+..+. |. +.|+.+..+|..+.|++.+.++
T Consensus 110 -----------------~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 110 -----------------SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAK 171 (609)
T ss_pred -----------------EEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCc
Confidence 99999999999999999999999999988877665 44 4899999999999999999999
Q ss_pred eEEEEECCCCCceEE--EEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCee-EEEEec---cCC---CeEEEE
Q 011924 370 TCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYE-KEQEID---FFG---EISGIS 439 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~-~~~~~~---~~~---~i~~l~ 439 (475)
.|.+||.|....+.. .+.........+.|+|.. ++|++++..+-+.+||++.... +.+... ... +-.+..
T Consensus 172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 999999987432322 223344567889999965 6888898888999999875432 222221 112 235788
Q ss_pred EcCCCCeEEE
Q 011924 440 FSPDTESLFI 449 (475)
Q Consensus 440 fspdg~~l~~ 449 (475)
|+|+|..|++
T Consensus 252 ~~~~G~Q~ms 261 (609)
T KOG4227|consen 252 WSPSGNQFMS 261 (609)
T ss_pred eCCCCCeehh
Confidence 9999987764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-10 Score=102.07 Aligned_cols=248 Identities=17% Similarity=0.161 Sum_probs=159.4
Q ss_pred EEEEE--cCcEEEEEec---CceEEEEeCCCC-C-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 193 STLAV--KDKLLVAGGF---QGELICKHLDRP-G-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~---dg~i~vw~~~~~-~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+-|++ +++.|.++.. .|.|..+.++.. + ..+.... .....+.+.+++ +++|+.++++...-|.|.++-++
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcc
Confidence 34444 7778888754 488888888764 2 2221122 122233478888 99999866666778999999986
Q ss_pred C-Ceee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCce
Q 011924 266 K-YQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKT 339 (475)
Q Consensus 266 ~-~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~ 339 (475)
. |.+. ..+.|..+-- ...+....+.+..+.|++++|++.. .| .|.+|++..|++
T Consensus 120 ~dG~l~~~v~~~~h~g~~p-------------------~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L 179 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGP-------------------HERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKL 179 (346)
T ss_pred cCCccccceeeeecCCCCC-------------------CccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcc
Confidence 5 4332 2333333300 0000000111778999999999874 44 599999997765
Q ss_pred EEEee---cCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecC---------CCceEEEEEccCCCEEE
Q 011924 340 IASLC---GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGN---------LGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 340 ~~~l~---~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~la 406 (475)
...-. ......+-+.|||++++.+..+. +++|.+|........+..++.+ ......+..+|||++|.
T Consensus 180 ~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 180 TPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 32211 23456788999999999988876 8999999997643434444321 23566899999999998
Q ss_pred EEcC-CCeEEEEECCC--CeeE-EEEe-ccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEee
Q 011924 407 TAEP-ADFVHVYDVKS--GYEK-EQEI-DFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 465 (475)
Q Consensus 407 ~~~~-dg~i~iwd~~~--~~~~-~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~ 465 (475)
++.. .+.|.+|.+.. +... .... .+....+.+.|+|.|++|+++..|+.. +.-|.+.
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~--i~vf~~d 321 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN--ITVFERD 321 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc--EEEEEEc
Confidence 8754 34788887753 3221 1112 233348899999999999999887654 4444443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-11 Score=118.10 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=138.5
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd 263 (475)
.+...+| +|+.|+..+.. ..|.+|++...... .+ ....+.+....| +|+|+.++++.+.++ .|.+||
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l-~~~~g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QI-TNFEGLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---Ec-cCCCCCcCCeEE--CCCCCEEEEEEccCCCceEEEEE
Confidence 4566666 88888776543 46888998765433 22 222334456777 999998666666665 578889
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-C--CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d--g~i~iwd~~~~~~~ 340 (475)
+.+++............ ...|+|+|+.++..+. + ..|+++++.+++..
T Consensus 274 ~~~~~~~~lt~~~~~~~-----------------------------~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 274 LASRQLSRVTNHPAIDT-----------------------------EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCCCeEEcccCCCCcC-----------------------------CeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 98876544333333333 6789999998887664 2 36888888777643
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD-K--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i 414 (475)
.+..........+|+|+|+.|+..+.. + .|.+||+.. +. ...+... .......|+|||++|+.++.+ ..|
T Consensus 325 -~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 325 -RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CCCCCceECCCCCEEEEEEecCCceEE
Confidence 333222334467899999999887653 3 588899865 33 3333322 223367899999998877654 357
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.++++. |.....+..+.+.+...+|||-
T Consensus 401 ~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 401 MLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 778875 4444445455677888889874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-11 Score=119.35 Aligned_cols=213 Identities=19% Similarity=0.200 Sum_probs=135.9
Q ss_pred eEEEEEE--cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe--EEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~--v~iwd 263 (475)
.+.+..| +|+.|+..+.. ..|++|++...... .+. ...+......| +|+|+.++++.+.++. |.++|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt-~~~g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVT-SFPGINGAPRF--SPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---Eec-CCCCCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEE
Confidence 4555555 88888776543 36888888765432 111 11223345677 9999986777777775 77778
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-C--CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d--g~i~iwd~~~~~~~ 340 (475)
+.+++......+..... ..+|+|+|+.++..+. + ..|+++|+.+++..
T Consensus 293 l~tg~~~~lt~~~~~~~-----------------------------~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 293 IATKALTRITRHRAIDT-----------------------------EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCCCCeEECccCCCCcc-----------------------------ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 87776544333333334 6789999998887654 2 35777788777643
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-C--eE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FV 414 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i 414 (475)
.+..........+|+|+|++|+..+. ++ .|.++|+.. +. ...+.... ......|+|+|++|+..+.+ + .+
T Consensus 344 -~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l 419 (448)
T PRK04792 344 -RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVL 419 (448)
T ss_pred -EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-CCCCceECCCCCEEEEEEecCCceEE
Confidence 33322333455799999999887765 34 455567755 33 33333221 22356899999988876654 2 47
Q ss_pred EEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 415 HVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+++. +|.....+..+.+.+...+|||-
T Consensus 420 ~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 420 AAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 78886 45556666666678888999883
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=111.11 Aligned_cols=259 Identities=14% Similarity=0.172 Sum_probs=160.1
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCc-eEE-EeeecCCC------------CceeEEEEEeCCCCCeEEEEEe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-SFC-SRTTYDDN------------AITNAVEIYGSPSGAVHFTASN 254 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-~~~-~~~~~~~~------------~~v~~l~~~~s~~g~~~l~s~s 254 (475)
-|+++.| .|.+|++|..+|.|.++.-..... .+. ...+..|. ..|+.+.|..-.+.. .++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEEec
Confidence 4778888 899999999999999987654332 111 12223333 348889995333444 466667
Q ss_pred CCCeEEEEECCCCeeee-eeeccccEEeccCCceEEEEEEeecccceE--------E---EEeeeeeeEEECCCCcEEEE
Q 011924 255 NDCGVRDFDMGKYQLSK-HFRFPWPVNVSSSYCIILLCRLLNFMTEKV--------I---ICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 255 ~dg~v~iwd~~~~~~~~-~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~--------~---~~~~~i~~~~~sp~g~~l~~ 322 (475)
+|.+|++|.+....... .+..+... +. ..+..+++--...... + .+.-.|.+++++.|+..+++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~---~~-~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEG---PP-GTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred CCcceeeeeeeccccccccccccccC---CC-CccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 99999999885432221 11100000 00 0000111110000000 0 01114668999999999987
Q ss_pred EeCCCcEEEEECCCC-c--eEEEeecC-----CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce-----EEE---
Q 011924 323 VGDNPDGLLVDSMTG-K--TIASLCGH-----LDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES-----VAV--- 385 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~-~--~~~~l~~h-----~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~-----~~~--- 385 (475)
+ +|-.|.+|.+.-. + .+.-++.+ ..-|++..||| ..+.|+.++..|+|++-|+|...-+ +..
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 7 6678999998722 2 12223333 24578899999 6788999999999999999852111 111
Q ss_pred -------EecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC-CCCeeEEEEeccC------------CC---eEEEEEcC
Q 011924 386 -------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-KSGYEKEQEIDFF------------GE---ISGISFSP 442 (475)
Q Consensus 386 -------~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~~---i~~l~fsp 442 (475)
+.+--..|..+.|+++|+++++-.. -+|++||+ ....++..+.-|. .. -..++||-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1111246888999999999998764 47999998 4455666665543 11 24578999
Q ss_pred CCCeEEEEEecCCc
Q 011924 443 DTESLFIGVWDRTY 456 (475)
Q Consensus 443 dg~~l~~~~~D~~~ 456 (475)
++.++++|+....+
T Consensus 340 ~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVF 353 (433)
T ss_pred CcceEecccccceE
Confidence 99999999876544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=115.49 Aligned_cols=261 Identities=14% Similarity=0.149 Sum_probs=167.7
Q ss_pred EEEEEE--cCcEEE-EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV--KDKLLV-AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.+.|.. +|++++ +|...-.|+||++.+....+. .+..+.+..+.+. +.+-.. ++.-.+|.+|.+...-...
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE----RhlDae~V~feiL-sDD~SK-~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE----RHLDAEVVDFEIL-SDDYSK-SVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccceeeee----ecccccceeEEEe-ccchhh-heEeecCceeeehhhcCee
Confidence 344555 888755 677889999999986554432 2222222222221 333333 2222356666554322111
Q ss_pred eeeeee-ccccEEeccCCceEE------EEEEeecccceEEEEe----eeeeeEEECCCCcEEEEEeCCCcEEEEECCCC
Q 011924 269 LSKHFR-FPWPVNVSSSYCIIL------LCRLLNFMTEKVIICL----LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 269 ~~~~~~-~~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~----~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
....++ +...+..+...+.|. .+.-.++..|.-+..+ .++.++.+++...+|++|+.+|.+..||.++.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 111111 223333332222221 2333455555443322 25569999999999999999999999999987
Q ss_pred ceEEEeec------CCC-----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC--CCE
Q 011924 338 KTIASLCG------HLD-----FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD--GRY 404 (475)
Q Consensus 338 ~~~~~l~~------h~~-----~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd--g~~ 404 (475)
..+.++.. |.+ .|+++.|+.+|-.+++|...|.|.|||+|.....+..-.+..-+|..+.|.+. +..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 76666542 333 38999999999999999999999999999844444444455568999999775 345
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
|++.. ...++|||-.+|+....+.. ...+..+++-|++-.+++|-.++.+....
T Consensus 288 v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 288 VVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred EEecc-hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 55543 45799999999987766554 44599999999999999998887665443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=111.82 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=136.5
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
||+|++ +++++ +-.+-|-|.++.+....|..-..|. .+.|..+..++++
T Consensus 17 Sp~g~y-iAs~~-~yrlviRd~~tlq~~qlf~cldki~-----------------------------yieW~ads~~ilC 65 (447)
T KOG4497|consen 17 SPCGNY-IASLS-RYRLVIRDSETLQLHQLFLCLDKIV-----------------------------YIEWKADSCHILC 65 (447)
T ss_pred CCCCCe-eeeee-eeEEEEeccchhhHHHHHHHHHHhh-----------------------------heeeeccceeeee
Confidence 999997 88874 4478888888887776666555566 7888887777665
Q ss_pred E-eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc
Q 011924 323 V-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT-FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 323 ~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~-l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 400 (475)
+ ..++.|.+|++....-...+...+.++.+++|||+|+. |.+...+-.|.||.+.+ .+ ...++-....+..++|+|
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~-~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QK-GYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc-ce-eEEecccccCceeEEECC
Confidence 4 67889999999988888888888889999999999955 45666788999999965 33 333333344568899999
Q ss_pred CCCEEEEEcCC------------------------------------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 401 DGRYMATAEPA------------------------------------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 401 dg~~la~~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
||++.+.++.- +.+.|||---...+..+. -.-.+..++|+|.+
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCN 222 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEecccc
Confidence 99998877632 235555532222222111 12368889999999
Q ss_pred CeEEEEEecCCcceEEEEE
Q 011924 445 ESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ll~~~ 463 (475)
++|++|+.|+.++.|-++.
T Consensus 223 qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ceEEeeccchhhhhhceee
Confidence 9999999998887665544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=124.47 Aligned_cols=194 Identities=12% Similarity=0.027 Sum_probs=153.6
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe
Q 011924 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG 324 (475)
Q Consensus 245 ~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 324 (475)
..+. ++.++.+..+.+||...+.......+....... +..-+.++++.-++++|+
T Consensus 98 e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~------------------------~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 98 ENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY------------------------SSLIIGDSAEELYIASGS 152 (967)
T ss_pred hcce-EEEEEcCceEEEEecccCceehhcCCCceEEEE------------------------eEEEEeccCcEEEEEecc
Confidence 4443 677778889999999887777666654433311 000334677888899999
Q ss_pred CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 325 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 325 ~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
.-+.|.+|+....+....+.||.+.++++.|+-+|+++++.|.|.++|+|++.+........-+|...|+.+.|.|+ .
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence 99999999987444444789999999999999999999999999999999998754444467789999999999999 8
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccC-CCeEEEEEcCCCCeEEEEEecCCcceEEEEEeec
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~ 466 (475)
+++++.|.+.++|+. .+..+..+..|. ..|..++..++...+++++.|+.++..-...++.
T Consensus 231 i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred eEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 999999999999974 456666777776 4699999999999999999999987555444443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-09 Score=105.10 Aligned_cols=194 Identities=16% Similarity=0.132 Sum_probs=132.4
Q ss_pred cEE-EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecccc
Q 011924 200 KLL-VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP 278 (475)
Q Consensus 200 ~~l-vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 278 (475)
+++ ++-..+|.|.+.|..+.+... .+......-..+.+ +|+|++ +++++.||.|.++|+.+.+.+..+.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~--s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVA---RIPTGGAPHAGLKF--SPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGGN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEE---EEE-STTEEEEEE---TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEE---EEcCCCCceeEEEe--cCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCCC
Confidence 344 556678999999988766553 22222222233455 999997 55567899999999999999999987666
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeecC-------CCCe
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGH-------LDFS 350 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~h-------~~~v 350 (475)
.. ++++|++|++++++. ..+.+.++|.++.+++..+... ...+
T Consensus 80 ~~-----------------------------~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 80 PR-----------------------------GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp EE-----------------------------EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred cc-----------------------------eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 77 899999999998875 6889999999999999887642 3467
Q ss_pred EEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEE
Q 011924 351 FASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~ 428 (475)
.++..+|....++..-. .+.|-+-|......................|+|+|++++++ ...+.|-++|.++++.+..+
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 78888888886666655 47888889876433333333334467789999999987664 55679999999998776654
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=121.59 Aligned_cols=251 Identities=16% Similarity=0.236 Sum_probs=180.3
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~- 266 (475)
+.|.++.| .|..|++|+.|-+|.+|++...... .....+|...|---.|....+... +++++.||.|++=.+..
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDGQVRVSEILET 219 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcC-ceeccccCceeeeeeccc
Confidence 46888888 8999999999999999999877665 355667777776666754444444 88999999999987643
Q ss_pred Ceee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
+.+. +..+|.+++. -++.-| +...|.+++.|+.+.-+|++++.+...
T Consensus 220 ~~~e~t~rl~~h~g~vh-----------------------------klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVH-----------------------------KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred cceecceecccccCccc-----------------------------eeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 3332 2334788888 888888 556788999999999999998876544
Q ss_pred ee---cCCC---CeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce-----EEEEec------CCCceEEEEEccCCCE
Q 011924 343 LC---GHLD---FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES-----VAVLKG------NLGAIRSIRYTSDGRY 404 (475)
Q Consensus 343 l~---~h~~---~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~-----~~~~~~------~~~~v~~l~~spdg~~ 404 (475)
+. .+.. ..++++.+| +.+++++|+.|..+++||.+...+. +..+.. ..-.|++++|+.+|.-
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 43 2333 578899999 6669999999999999999753321 222222 2347999999988888
Q ss_pred EEEEcCCCeEEEEECCC--C-----------eeEEEEeccCC--CeEEEE-EcCCCCeEEEE-------EecCCcceEEE
Q 011924 405 MATAEPADFVHVYDVKS--G-----------YEKEQEIDFFG--EISGIS-FSPDTESLFIG-------VWDRTYGSLLE 461 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~--~-----------~~~~~~~~~~~--~i~~l~-fspdg~~l~~~-------~~D~~~~~ll~ 461 (475)
|.++..|-.|++|.-.- | ...+.+++|.. .|.++- |-|..+|+++| -||...+.+++
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 88888888899995322 2 12233667763 466665 47888999988 46666667766
Q ss_pred EEeecceeeecc
Q 011924 462 YGRCRNYSYLDS 473 (475)
Q Consensus 462 ~~~~~~~~~l~~ 473 (475)
+..+... .++|
T Consensus 431 ~MegDr~-VVNC 441 (559)
T KOG1334|consen 431 FMEGDRH-VVNC 441 (559)
T ss_pred Hhhcccc-eEec
Confidence 6655443 4444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-11 Score=113.78 Aligned_cols=191 Identities=16% Similarity=0.089 Sum_probs=148.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceE---EEEeeeeeeEEECCCCcEEEEEeC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKV---IICLLCLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~---~~~~~~i~~~~~sp~g~~l~~~~~ 325 (475)
+++....||.+|+|+..++++...|....... +. ++...|.+..+.. ..+... ...-+.+-..++-|..
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s----~t--~~~~~w~L~~~~s~~k~~~~~~--~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLS----GT--CTYTKWGLSADYSPMKWLSLEK--AKKASLDTSMLVLGTP 78 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhcc----Cc--ceeEEEEEEeccchHHHHhHHH--HhhccCCceEEEeecC
Confidence 48888999999999999998877776332222 10 1123333211110 000000 1112334456777888
Q ss_pred CCcEEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 326 NPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
.|.|.+|+...|+....+. +|.+.|.++.|+.+-..|.+++.|+.+..|+... ...++.+.+....+.+++.+|||+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCC
Confidence 9999999999999888887 5899999999999999999999999999999966 788888888888999999999999
Q ss_pred EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC-----CCeEEEE
Q 011924 404 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-----TESLFIG 450 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd-----g~~l~~~ 450 (475)
.|++|+. .|++||+++++.+..+.+|.++|++++|--+ |.+++++
T Consensus 158 ~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 158 ILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred EEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 9999874 7999999999999999999999999999887 6776654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-11 Score=114.58 Aligned_cols=235 Identities=13% Similarity=0.177 Sum_probs=154.6
Q ss_pred CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCC---ceEEEE---EEeecc--cce
Q 011924 230 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSY---CIILLC---RLLNFM--TEK 300 (475)
Q Consensus 230 ~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~---~~l~~~---~v~d~~--~~~ 300 (475)
.+....+.|.+ +|+|++++++|..--.|++||+..-.+..... ....|.|-+-. ..++.+ +-.+++ .|.
T Consensus 49 e~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 45566778888 99999999999999999999997654433222 12233322111 000000 000111 111
Q ss_pred EEEEee--eeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 301 VIICLL--CLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 301 ~~~~~~--~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
....-. .-..++++. ...++ +++....|+-+++..|+.+..+....+.+++|..+|...+|++|+.+|.|..||.|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111100 112455553 44444 44455678999999999999998888999999999988999999999999999998
Q ss_pred CCCceEEEEec------CCC-----ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC--CCeEEEEEcCCC
Q 011924 378 NLSESVAVLKG------NLG-----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDT 444 (475)
Q Consensus 378 ~~~~~~~~~~~------~~~-----~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~fspdg 444 (475)
. .+.+..+.. +.+ .|+++.|+.+|-.+++|...|.|.|||+++..++. +..|. -+|..+.|-+.+
T Consensus 206 ~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 206 D-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred h-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccC
Confidence 7 444444432 222 49999999999999999999999999999876653 34555 478899998764
Q ss_pred CeEEEEEecCCcceEEEEEeeccee
Q 011924 445 ESLFIGVWDRTYGSLLEYGRCRNYS 469 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ll~~~~~~~~~ 469 (475)
..=.+.+.|..+-.++.-..+..+.
T Consensus 284 ~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 284 QQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred CCceEEecchHHhhhcccccCCcee
Confidence 4434444555555555444444433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-09 Score=100.65 Aligned_cols=261 Identities=18% Similarity=0.201 Sum_probs=161.2
Q ss_pred cceeEEecCCCeEEEecC-----CeEEEEecCCC--CceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEE
Q 011924 133 LRNLVWATSKHDVYLMSH-----FSVIHWSSLTS--SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV 203 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~-----~~v~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lv 203 (475)
...+.+.++...||.... +.|..|..... +...+-... . .+..-..+++ ++++|+
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---------------~-~g~~p~~i~~~~~g~~l~ 102 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---------------S-GGSSPCHIAVDPDGRFLY 102 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---------------E-SSSCEEEEEECTTSSEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---------------c-CCCCcEEEEEecCCCEEE
Confidence 345667777788888643 46776665443 332221111 0 1112234555 888888
Q ss_pred EEe-cCceEEEEeCCCCCceEEE-eeec----------CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe--e
Q 011924 204 AGG-FQGELICKHLDRPGVSFCS-RTTY----------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--L 269 (475)
Q Consensus 204 sg~-~dg~i~vw~~~~~~~~~~~-~~~~----------~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~--~ 269 (475)
++. .+|.|.++++...+..... .... .......++.+ +|+|++++++.-....|++|++.... +
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 876 4899999999876533222 1111 12344567777 99999877766556689999997644 3
Q ss_pred ee--ee--eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECC--CCce--E
Q 011924 270 SK--HF--RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSM--TGKT--I 340 (475)
Q Consensus 270 ~~--~~--~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~--~~~~--~ 340 (475)
.. .+ ......+ +++|+|+++++.+.. .++.|.++++. +++. +
T Consensus 181 ~~~~~~~~~~G~GPR-----------------------------h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPR-----------------------------HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp EEEEEEECSTTSSEE-----------------------------EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEeeccccccCCCCc-----------------------------EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 22 22 2333445 899999999887765 56789999887 4432 2
Q ss_pred EEeec----C--CCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-Cc--eEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 341 ASLCG----H--LDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-SE--SVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 341 ~~l~~----h--~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
..+.. . ......++++|+|++|++++. ..+|.+|++... +. .+..+.......+.++++|+|++|+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 22221 1 125788999999999988875 668999999432 22 33334433445789999999999998874
Q ss_pred -CCeEEEEEC--CCCeeEEEEe-ccCCCeEEEEE
Q 011924 411 -ADFVHVYDV--KSGYEKEQEI-DFFGEISGISF 440 (475)
Q Consensus 411 -dg~i~iwd~--~~~~~~~~~~-~~~~~i~~l~f 440 (475)
++.|.+|++ ++|.....-. ..-....||.|
T Consensus 312 ~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 312 DSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 578999866 5776544432 23356777766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.6e-11 Score=104.20 Aligned_cols=235 Identities=16% Similarity=0.098 Sum_probs=152.0
Q ss_pred eEEEEEE-----cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCcee-EEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 191 QVSTLAV-----KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITN-AVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 191 ~v~~l~~-----~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+..|-| ++. .|+-+-..|.|.++............-.....-.+. ++.+.+++.+.. ++++-.+|.+.+-+
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVY 149 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEe
Confidence 4455555 444 556667789999987654333211111222222222 455555888887 66666778887555
Q ss_pred CCCCeeee--eee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-CCc
Q 011924 264 MGKYQLSK--HFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-TGK 338 (475)
Q Consensus 264 ~~~~~~~~--~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~~~ 338 (475)
.....+.. ..+ |..+.- -.+|+- +.+++.+|++|+.+..||+| .++
T Consensus 150 ~t~~~le~vq~wk~He~E~W-----------------------------ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAW-----------------------------TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred cceeeeeecccccccceeee-----------------------------eeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 44333322 222 333333 445654 55789999999999999999 344
Q ss_pred eEEE-eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC--CCEEEEEcCCCeE
Q 011924 339 TIAS-LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD--GRYMATAEPADFV 414 (475)
Q Consensus 339 ~~~~-l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd--g~~la~~~~dg~i 414 (475)
.+.. .+-|...|.++.-+| .+.+++||+.|-.|++||.|+.++++..-.. .+.|+.+.++|. ++.|+++-.+| .
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ 278 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-A 278 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-c
Confidence 4433 456888999998887 7899999999999999999988888876554 478999999994 45566666666 7
Q ss_pred EEEECCCCee-----EEEEeccCCCeEEEEEcCCCCeEEEE-EecCCcc
Q 011924 415 HVYDVKSGYE-----KEQEIDFFGEISGISFSPDTESLFIG-VWDRTYG 457 (475)
Q Consensus 415 ~iwd~~~~~~-----~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~~~ 457 (475)
+|-++..+.. ......|.+-..+-.|......|+++ ..|+.+.
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR 327 (339)
T ss_pred eEEEecccccchheeeeccccccceeeccccccccceeeeeecccccee
Confidence 7777765432 22333466666666774444556664 4565533
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=111.68 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=152.4
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeC----C-------------CCCeEEEEEeCCCeEEE
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS----P-------------SGAVHFTASNNDCGVRD 261 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s----~-------------~g~~~l~s~s~dg~v~i 261 (475)
..+++....+|.+++|+...+.......-.....+...+..|..+ | .+..+++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 457888899999999999877654333333333344444444322 2 23446888889999999
Q ss_pred EECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc
Q 011924 262 FDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 262 wd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
|++..++....+. |.++|+ ++.++.+-..|.+++.|+.+..|+...++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~-----------------------------~~~~~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVN-----------------------------EILDAQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEecCCeEEEEEecCCCCCcce-----------------------------eeecccccCceEecCCceeEEEEecccce
Confidence 9999999988776 788999 99999999999999999999999999999
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC-----CCEEEE-EcCCC
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-----GRYMAT-AEPAD 412 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~la~-~~~dg 412 (475)
.++.+.+.+..+.+++.+|||..+++++ ++|++||+.+ .+.+..+.+|.++|+++.|.-+ |.++.+ +....
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 9999998889999999999999999997 5799999977 8999999999999999999876 665544 44455
Q ss_pred eEEEEECC
Q 011924 413 FVHVYDVK 420 (475)
Q Consensus 413 ~i~iwd~~ 420 (475)
.+.+|-+.
T Consensus 213 ~i~~w~v~ 220 (541)
T KOG4547|consen 213 GITVWVVE 220 (541)
T ss_pred ceeEEEEE
Confidence 57777554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=115.94 Aligned_cols=289 Identities=14% Similarity=0.175 Sum_probs=198.0
Q ss_pred eeecccceeEEecCCCeEEE--ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEE
Q 011924 128 ILHFQLRNLVWATSKHDVYL--MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVA 204 (475)
Q Consensus 128 ~~h~~lr~l~~~~~~~~v~~--~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvs 204 (475)
..|....|-|......++.. ..+..+++|+..+++.+.-+. +||-.- ..+---|-+ +...|++
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~N-------------vfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNN-------------VFQAKFIPFSGDRTIVT 204 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccc-------------hhhhhccCCCCCcCcee
Confidence 34555555554444444444 234789999998775433221 222100 001111222 6678999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---cccc--E
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWP--V 279 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~--v 279 (475)
.+.||++++=.+...+...-.+....|.+.|.-++. -|....-|.+++.|+.+.-+|++.......+. ...+ |
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred ccccCceeeeeeccccceecceecccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999999887766655445667789999999999 88887789999999999999998765433332 1111 2
Q ss_pred EeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCc------eEEEeec------C
Q 011924 280 NVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGK------TIASLCG------H 346 (475)
Q Consensus 280 ~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~------~~~~l~~------h 346 (475)
. .+.++..| +...+++++.+..+++||.+.-. .+..+.. .
T Consensus 283 ~---------------------------L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 283 G---------------------------LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred e---------------------------eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 2 12888999 44589999999999999987321 1222222 2
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-C----------ceEEE-EecCCC--ceEEEEE-ccCCCEEEEEcCC
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-S----------ESVAV-LKGNLG--AIRSIRY-TSDGRYMATAEPA 411 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~----------~~~~~-~~~~~~--~v~~l~~-spdg~~la~~~~d 411 (475)
...|++++++.++.-|+++-.|-.|.++.-... + ..+.. +++|.. .|..+-| -|...|+++|+.-
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 346899999987777777777888999943211 1 12222 677754 4556654 7888999999999
Q ss_pred CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 412 DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
|.|.||+-++++.+....+-..-|.||.=+|--..||+++-|..++.+
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 999999988887776666655689999999999999999999887644
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=103.69 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=162.9
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccccccee-EEEEEE-cCcEEEEEecCce
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ-VSTLAV-KDKLLVAGGFQGE 210 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~-~~~~lvsg~~dg~ 210 (475)
.||+ .+++..|.+...+.|+.+++.+.+...+ +..=++.-..+.+. ....+. .-..+. +|++++..+ .|+
T Consensus 271 ~R~~--nsDGkrIvFq~~GdIylydP~td~lekl-dI~lpl~rk~k~~k----~~~pskyledfa~~~Gd~ia~VS-RGk 342 (668)
T COG4946 271 PRNA--NSDGKRIVFQNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQPK----FVNPSKYLEDFAVVNGDYIALVS-RGK 342 (668)
T ss_pred cccc--CCCCcEEEEecCCcEEEeCCCcCcceee-ecCCcccccccccc----ccCHHHhhhhhccCCCcEEEEEe-cCc
Confidence 3454 5677888888889999999988876553 22101110111110 111111 112344 788888876 566
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-eEEEEECCCCeeeeeeeccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~ 289 (475)
..+.+...+- .+.-++.+.|....+ ..+++. ++.|.+|| .+-|+|..+++..+....-+.+.
T Consensus 343 aFi~~~~~~~-----~iqv~~~~~VrY~r~--~~~~e~-~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~--------- 405 (668)
T COG4946 343 AFIMRPWDGY-----SIQVGKKGGVRYRRI--QVDPEG-DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE--------- 405 (668)
T ss_pred EEEECCCCCe-----eEEcCCCCceEEEEE--ccCCcc-eEEeccCCceEEEEecCCceEEEeeCCccceE---------
Confidence 7666654322 223356666888888 555554 88888999 89999999988877777777787
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
++..+|+|+.++++.....+.++|+.+|+....=+...+-|...+|||+++++|-+--+|
T Consensus 406 --------------------av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 406 --------------------AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred --------------------EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 999999999999999999999999999987665566678899999999999999987766
Q ss_pred ----eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 370 ----TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 370 ----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
.|+++|+.. ++. ...+...+.=.+.+|.|+|++|..-+
T Consensus 466 y~tq~Iklydm~~-~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 466 YYTQSIKLYDMDG-GKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeeeeEEEEecCC-CeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 699999975 443 33343444446789999999887654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-09 Score=105.18 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=126.0
Q ss_pred ceeEEEEEeCCCCCe-EEEEEeC--CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 234 ITNAVEIYGSPSGAV-HFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~-~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
......| +|+|+. ++++... ...|.++|+.+++.......++... .
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-----------------------------~ 237 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-----------------------------V 237 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-----------------------------e
Confidence 5556677 999985 3433332 3568888998887655554555555 6
Q ss_pred EEECCCCcEEEEEe---CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCCceEE
Q 011924 311 SSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVA 384 (475)
Q Consensus 311 ~~~sp~g~~l~~~~---~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg--~v~iwd~~~~~~~~~ 384 (475)
..|+|||+.++... .+..|+++++.+++ ...+..+........|+|||+.|+..+. .+ .|.+.|+.. +...+
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~~r 315 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSVEQ 315 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCeEe
Confidence 78999998777653 23578888987776 4455544443445689999998877664 23 577778854 44322
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCC---------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPA---------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+..... ....|||+|++|+..+.. ..|.+.|+.++.. ..+... +......|||||+.|+....++.
T Consensus 316 -lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 -VVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred -CccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 222111 135899999988876643 3688889888754 333332 33446899999999988876655
Q ss_pred cceEEEEE
Q 011924 456 YGSLLEYG 463 (475)
Q Consensus 456 ~~~ll~~~ 463 (475)
...|....
T Consensus 391 ~~~L~~~~ 398 (419)
T PRK04043 391 QSALGIIR 398 (419)
T ss_pred cEEEEEEe
Confidence 54454443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-11 Score=120.93 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=146.5
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCc-eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeee
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAI-TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKH 272 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~ 272 (475)
+.++...++.+..+..+.+|+....... ..+....... ..++-+-.+++. ..+++|+--+.|.+|+... ...++.
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCccee
Confidence 3447788899999999999998654332 1222222111 122223234444 4588899999999999863 233334
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeE
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSF 351 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~ 351 (475)
..|.+.+- .+.++-+|++++++++|..+++|++.+++... +.-+|+..++
T Consensus 172 ~GHeG~iF-----------------------------~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 172 KGHEGSIF-----------------------------SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred cccCCceE-----------------------------EEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence 44777777 99999999999999999999999999887665 6668999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-CceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.++|+|+ .++|++.|-++++|+.. +..+..+.+|. ..++.++..++...+++++.|+.+++|++..
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999998 89999999999999774 55566777776 4789999999989999999999999999754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=107.60 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=124.7
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC----eEEEEECCCC---eeeeeeecc-ccEE
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKY---QLSKHFRFP-WPVN 280 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~---~~~~~~~~~-~~v~ 280 (475)
..|.+.++..+... ++. ...+......| ||+|+.++++...+| .+.+|++..+ +........ ....
T Consensus 211 ~~I~~~~l~~g~~~---~lt-~~~g~~~~p~w--SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~ 284 (428)
T PRK01029 211 PKIFLGSLENPAGK---KIL-ALQGNQLMPTF--SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQG 284 (428)
T ss_pred ceEEEEECCCCCce---Eee-cCCCCccceEE--CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcC
Confidence 46777787755433 221 12333445677 999998666654333 3444666542 222222221 1223
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCc--EEEEECCC-CceEEEeecCCCCeEEEEEe
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPD--GLLVDSMT-GKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~--i~iwd~~~-~~~~~~l~~h~~~v~~~~~s 356 (475)
..+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+...+|+
T Consensus 285 -----------------------------~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 285 -----------------------------NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred -----------------------------CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 678999999888776 3554 44555542 33455566555677889999
Q ss_pred cCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEEECCCCeeEEEEec
Q 011924 357 PNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 357 p~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~ 430 (475)
|||+.|+..+.+ ..|.+||+.. ++. ..+......+..+.|+|||++|+.... ...|.++|+.+++.. .+..
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~ 412 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVI 412 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec
Confidence 999999877653 3699999965 443 344433445678999999998875443 356899999877543 3444
Q ss_pred cCCCeEEEEEcCCC
Q 011924 431 FFGEISGISFSPDT 444 (475)
Q Consensus 431 ~~~~i~~l~fspdg 444 (475)
..+.+...+|+|-.
T Consensus 413 ~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCcccCceecCCC
Confidence 56778889999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-09 Score=101.71 Aligned_cols=241 Identities=16% Similarity=0.167 Sum_probs=149.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE-----eCC-----CeEEEEECCCC
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-----NND-----CGVRDFDMGKY 267 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~-----s~d-----g~v~iwd~~~~ 267 (475)
++..+.+-+.++.+.|++........|... . .+..+.| ||-|.+ +.+- ..+ ..+.+|+++++
T Consensus 44 ~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~----~-~~~~L~f--SP~g~y-L~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 44 NNGRLFAYSDNQVVKVFEIATLKVVLCVEL----K-KTYDLLF--SPKGNY-LLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred CCCcEEEEEcCCeEEEEEccCCcEEEEecc----c-eeeeeee--cccccc-cccccccccccCCCCCCCceeeeeeccc
Confidence 444444555678899999877664433222 1 4566666 999876 4431 122 34779999885
Q ss_pred eeeeeee----ccccEEeccCCceEE-----EEEEeecccceEEEEee---eee--------------------------
Q 011924 268 QLSKHFR----FPWPVNVSSSYCIIL-----LCRLLNFMTEKVIICLL---CLQ-------------------------- 309 (475)
Q Consensus 268 ~~~~~~~----~~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~~---~i~-------------------------- 309 (475)
.....+. ..|...|+.+....+ .+.+++...-+.+.... .|.
T Consensus 116 ~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 116 VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 5444443 235555665554332 34444444322222211 222
Q ss_pred --------------------------eEEECCCCcEE-EEEeC-----------CCcEEEEECCCCceEEEeecCCCCeE
Q 011924 310 --------------------------HSSQSPDGKLL-IIVGD-----------NPDGLLVDSMTGKTIASLCGHLDFSF 351 (475)
Q Consensus 310 --------------------------~~~~sp~g~~l-~~~~~-----------dg~i~iwd~~~~~~~~~l~~h~~~v~ 351 (475)
.+.|++-|.-| +.++. ..+++++++........|. -.++|.
T Consensus 196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVh 274 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVH 274 (566)
T ss_pred EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCce
Confidence 34444433322 22211 2345566655223333333 368999
Q ss_pred EEEEecCCCEEEE--EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEE
Q 011924 352 ASAWHPNGVTFAT--GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKE 426 (475)
Q Consensus 352 ~~~~sp~g~~l~t--~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~ 426 (475)
++.|+|+|+.|++ |-.-..+.|+|++ +.++..+. .++-.++-|+|.|++|+.|+-+ |.|-|||+.+.+++.
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence 9999999987765 4567789999996 56776664 4567899999999999988764 789999999866665
Q ss_pred EEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 427 QEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 427 ~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.+.. ..-+-+.|+|||++++++..-
T Consensus 351 ~~~a--~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 351 KFKA--ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred cccc--CCceEEEEcCCCcEEEEEecc
Confidence 5443 234567899999999998654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-08 Score=93.71 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=157.8
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEec----------CceEEEEeCCCCC
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGF----------QGELICKHLDRPG 220 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~----------dg~i~vw~~~~~~ 220 (475)
+++.+.+..+.+....+.... . .... ++.+++.|+++.. +..|.+||..+.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-------~----------P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-------L----------PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-------C----------Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 578888877766655544321 1 1122 6667777776654 7899999998877
Q ss_pred ceEEEeeecC-C---CCceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCeeeeeeeccccEE--eccCCceEE----
Q 011924 221 VSFCSRTTYD-D---NAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFRFPWPVN--VSSSYCIIL---- 289 (475)
Q Consensus 221 ~~~~~~~~~~-~---~~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~v~--~s~~~~~l~---- 289 (475)
......+-.. + ......+++ +|+|+.++++- +.+..|.+.|+.+++.+..+.-+.+.. .++....+.
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~D 166 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRD 166 (352)
T ss_pred EEeEEccCCCchhhccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeec
Confidence 6533332111 0 111224455 99999855554 337999999999999998887443322 111111110
Q ss_pred --EEEEeecccceEEEEeeee---------eeEEECC-CCcEEEEEeCCCcEEEEECCC-----CceEEEeec-------
Q 011924 290 --LCRLLNFMTEKVIICLLCL---------QHSSQSP-DGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG------- 345 (475)
Q Consensus 290 --~~~v~d~~~~~~~~~~~~i---------~~~~~sp-~g~~l~~~~~dg~i~iwd~~~-----~~~~~~l~~------- 345 (475)
...+-....++.......+ ..-.+.+ +|+++.+... |.|.+.|+.. .+.+..+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence 1111111222222111111 1113455 8887777766 9999999643 233333221
Q ss_pred CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-EEEEEc-CCCe
Q 011924 346 HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADF 413 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~-~dg~ 413 (475)
..+.+.-++++|+++.++.... .+.|.++|..+ .+.+..+... ..+..++++|||+ +|++.. .++.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCc
Confidence 2233445999999998888531 24799999977 6777776643 3788999999999 887766 5788
Q ss_pred EEEEECCCCeeEEEEe
Q 011924 414 VHVYDVKSGYEKEQEI 429 (475)
Q Consensus 414 i~iwd~~~~~~~~~~~ 429 (475)
|.++|+.+++.+..+.
T Consensus 324 VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 324 LYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECcCCeEEeeec
Confidence 9999999998888763
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-09 Score=101.24 Aligned_cols=258 Identities=13% Similarity=0.114 Sum_probs=164.1
Q ss_pred eEEEEEEcCcEEEEEec-----------CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 191 QVSTLAVKDKLLVAGGF-----------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~-----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+...+++..++||+-+. ...++|||+.++..........+....-.-..| |.++++ ++.-.. .+|
T Consensus 253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW--S~DdKy-~Arm~~-~si 328 (698)
T KOG2314|consen 253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW--SHDDKY-FARMTG-NSI 328 (698)
T ss_pred eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe--ccCCce-eEEecc-ceE
Confidence 44455558899998652 257999999987766444443333322333466 999986 555433 679
Q ss_pred EEEECCCCeeeee--e--eccccEEeccCCceEEE-----------EEEeecccceEEEEee--eee--eEEECCCCcEE
Q 011924 260 RDFDMGKYQLSKH--F--RFPWPVNVSSSYCIILL-----------CRLLNFMTEKVIICLL--CLQ--HSSQSPDGKLL 320 (475)
Q Consensus 260 ~iwd~~~~~~~~~--~--~~~~~v~~s~~~~~l~~-----------~~v~d~~~~~~~~~~~--~i~--~~~~sp~g~~l 320 (475)
.||+.....++.. + .......++|.+.+|+. +.+....+++.+.+.. .|. .+.|-.+|.+|
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 9999877554422 1 23445558888888863 4555666665554433 232 35677788888
Q ss_pred EEEeC----------CCcEEEEECCCCc-eEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECC-CCCc--eE
Q 011924 321 IIVGD----------NPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLR-NLSE--SV 383 (475)
Q Consensus 321 ~~~~~----------dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~~-~~~~--~~ 383 (475)
++--. -..+-|+.++... ++..+. -...|...+|-|.|+.+++-+. ..++.+|-+. +..+ .+
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 76321 1234456555332 333333 4567899999999998887654 4579999887 3222 33
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
..+. ....+.+.|+|.|++++++. ..|.+.++|+.-......-..-.-..+.+.|.|.|+|+++++.-..
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 3333 24567899999999998764 4688999997642222222222235678999999999999876544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-08 Score=93.47 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=145.7
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEECCCCeeeeeeec----
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFRF---- 275 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~---- 275 (475)
|+|.+.|..+.+..- .+..+.... .+ + ||+|+.++++.+ .+..|.+||..+.+.+..+..
T Consensus 27 ~~v~ViD~~~~~v~g--~i~~G~~P~--~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLG--MTDGGFLPN--PV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEE--EEEccCCCc--ee-E--CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 889999988766542 222222222 23 5 999999788888 789999999999999887763
Q ss_pred -------cccEEeccCCceEE--------EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--------CCCcEEEE
Q 011924 276 -------PWPVNVSSSYCIIL--------LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--------DNPDGLLV 332 (475)
Q Consensus 276 -------~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--------~dg~i~iw 332 (475)
+..+.++++|+.+. .+.+.|..+++.+..+. . |++..++..+ .||.....
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~------v-p~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD------V-PDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe------C-CCCcEEEEecCCccEEEeecCceEEE
Confidence 12566889998774 57899999998876443 1 4444444332 33333332
Q ss_pred ECC-CCceE-EE---eecCCCCeEE-EEEec-CCCEEEEEeCCCeEEEEECCCC----CceEEEEec-------CCCceE
Q 011924 333 DSM-TGKTI-AS---LCGHLDFSFA-SAWHP-NGVTFATGNQDKTCRIWDLRNL----SESVAVLKG-------NLGAIR 394 (475)
Q Consensus 333 d~~-~~~~~-~~---l~~h~~~v~~-~~~sp-~g~~l~t~s~dg~v~iwd~~~~----~~~~~~~~~-------~~~~v~ 394 (475)
.+. +|+.. .. +.+...++.. -.+.+ +|+++..... |+|.+-|+... ......+.. ..+.+.
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 222 22211 11 1111111111 14456 8888877777 99999996431 222222221 123444
Q ss_pred EEEEccCCCEEEEEc----------CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEe
Q 011924 395 SIRYTSDGRYMATAE----------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 452 (475)
Q Consensus 395 ~l~~spdg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~ 452 (475)
-++++|+|+.|+++. ..+.|.++|+++++.+..+.. ..++.+++|||||+ +|++...
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 599999999887743 225899999999988877663 56899999999999 7776653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-10 Score=101.23 Aligned_cols=258 Identities=17% Similarity=0.241 Sum_probs=161.1
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCC---ceEEEeeecCCC------------CceeEEEEEeCCCCCeEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPG---VSFCSRTTYDDN------------AITNAVEIYGSPSGAVHFTA 252 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~---~~~~~~~~~~~~------------~~v~~l~~~~s~~g~~~l~s 252 (475)
..|+++.+ .|.+|++|...|.|.++.-.... ..+. ..+++|. ..|+.|.|+ .+.|...++.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~-teFQshe~EFDYLkSleieEKin~I~w~-~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFF-TEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGRNHFLL 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhh-hhhcccccchhhhhhccHHHHhhheeee-cCCCcceEEE
Confidence 36889999 78899999999999999765433 1111 1122332 347888885 4555556777
Q ss_pred EeCCCeEEEEECCCCee--eeeeeccccEEeccCCceEE-------------------EEEEeecccceEEEEeeeeeeE
Q 011924 253 SNNDCGVRDFDMGKYQL--SKHFRFPWPVNVSSSYCIIL-------------------LCRLLNFMTEKVIICLLCLQHS 311 (475)
Q Consensus 253 ~s~dg~v~iwd~~~~~~--~~~~~~~~~v~~s~~~~~l~-------------------~~~v~d~~~~~~~~~~~~i~~~ 311 (475)
.++|.+|++|.+....+ +..-.....+.+...|..+. ..+++.- .+.-.|.++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN------aH~yhiNSi 178 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN------AHPYHINSI 178 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc------cceeEeeee
Confidence 77999999999865432 21111122222111111111 1122210 111245689
Q ss_pred EECCCCcEEEEEeCCCcEEEEECCCCc---eEEEeecCC-----CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce
Q 011924 312 SQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCGHL-----DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 312 ~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~l~~h~-----~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
+++.+...++++ ++-.|.+|++.-.. .+.-++.|. .-|++..||| ..+.+..++..|+|++-|+|...-+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999998888876 66779999986321 233344443 3578889999 5567777888899999999852211
Q ss_pred -----EEE----------EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe-eEEEEeccC------------CC
Q 011924 383 -----VAV----------LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFF------------GE 434 (475)
Q Consensus 383 -----~~~----------~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~------------~~ 434 (475)
+.. +.+-...|..+.|+|+|+++++-..- +|+|||+...+ ++.++.-|. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 111 11223478889999999999887654 79999987643 455553332 12
Q ss_pred e---EEEEEcCCCCeEEEEEecCCcc
Q 011924 435 I---SGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 435 i---~~l~fspdg~~l~~~~~D~~~~ 457 (475)
| ..+.||-|.+.+++|+....+|
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfg 362 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFG 362 (460)
T ss_pred eeeeEEEEecCCccccccccccccee
Confidence 2 3578898888888887665554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=112.80 Aligned_cols=196 Identities=9% Similarity=0.025 Sum_probs=134.0
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-------eeeeee-ccccEEeccCCceEEEEEEeec
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-------LSKHFR-FPWPVNVSSSYCIILLCRLLNF 296 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~ 296 (475)
...++.|.+.++.++. ++...-+|++||.||+|++|++..-. ...++. ....+.
T Consensus 1041 VAhL~Ehs~~v~k~a~--s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~---------------- 1102 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAV--SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE---------------- 1102 (1431)
T ss_pred eehhhhccccccceee--cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE----------------
Confidence 3566778888888887 66553469999999999999986411 111222 233444
Q ss_pred ccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC--Cce-----EEEeecCC-CC-eEEEEEec-CC-CEEEEE
Q 011924 297 MTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKT-----IASLCGHL-DF-SFASAWHP-NG-VTFATG 365 (475)
Q Consensus 297 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~-----~~~l~~h~-~~-v~~~~~sp-~g-~~l~t~ 365 (475)
++..-+.+..+|+++.||.|++.++.. .+. ......+. +. +..-++.. .+ ..++.+
T Consensus 1103 -------------~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1103 -------------KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred -------------EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE
Confidence 888889999999999999999999875 211 11111122 22 23334433 33 378888
Q ss_pred eCCCeEEEEECCCCCceEEE--EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-ccCCCeEEEEEcC
Q 011924 366 NQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFGEISGISFSP 442 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~fsp 442 (475)
..-+.|..||++. ....-. .....|.|++++.+|-+.+++.|+..|.+.+||++=+.++.... ++..+|..+..+|
T Consensus 1170 T~~~~iv~~D~r~-~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRM-RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred EeccceEEecchh-hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 8889999999987 332222 23345789999999999999999999999999998766655443 3446777777666
Q ss_pred C---CCeEEEEEe
Q 011924 443 D---TESLFIGVW 452 (475)
Q Consensus 443 d---g~~l~~~~~ 452 (475)
- ...+++++.
T Consensus 1249 ~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGS 1261 (1431)
T ss_pred cCCCCceEEEecc
Confidence 3 345555554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-08 Score=92.66 Aligned_cols=210 Identities=15% Similarity=0.196 Sum_probs=142.1
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC--CCeEEEEECCC--Ceeee--eee-ccccEE
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGK--YQLSK--HFR-FPWPVN 280 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~--dg~v~iwd~~~--~~~~~--~~~-~~~~v~ 280 (475)
+..|++|++++..............+..+.|+| +|+++.+.+.... +|.|..|.+.. |++.. ... ...+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 577999999865544333444456677888999 9999874444433 68888888764 44332 222 222335
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-CceEE--EeecCCCC-------
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTIA--SLCGHLDF------- 349 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~~~~--~l~~h~~~------- 349 (475)
.++++++|++|+++. ..|.|.++-++. |.+.. .+..|.+.
T Consensus 93 -----------------------------yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 93 -----------------------------YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred -----------------------------EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 889999999998886 457899999864 44322 12225544
Q ss_pred ---eEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceE----EEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECC
Q 011924 350 ---SFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESV----AVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVK 420 (475)
Q Consensus 350 ---v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~----~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~ 420 (475)
+....+.|++++|++..- --.|.+|++.. ++.. ..++ .....+.|.|+|+|++..+. ..+++|.+|...
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEccc-CccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 788999999999998853 22599999974 4321 1222 33467899999999988765 558999999887
Q ss_pred CC-eeEEEEec-------c--CCCeEEEEEcCCCCeEEEE
Q 011924 421 SG-YEKEQEID-------F--FGEISGISFSPDTESLFIG 450 (475)
Q Consensus 421 ~~-~~~~~~~~-------~--~~~i~~l~fspdg~~l~~~ 450 (475)
.. ..+..+.. + ......|..+|||++|.++
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 63 22222221 1 2467889999999999876
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=100.87 Aligned_cols=208 Identities=11% Similarity=0.114 Sum_probs=139.3
Q ss_pred eeEEEEEE----cCcEEEEEecCceEEEEeCCCCCceE--------------------------------EEe-eecCCC
Q 011924 190 TQVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSF--------------------------------CSR-TTYDDN 232 (475)
Q Consensus 190 ~~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~--------------------------------~~~-~~~~~~ 232 (475)
-.|..+.| ....++..+.+.+|++|.+...+... |.+ ....|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 36777888 44566677789999999885432211 111 123466
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
-.|++|.+ +.++.. ++++ .|-.|.+|.++--.....+-...|.+. ......|++..
T Consensus 165 yhiNSIS~--NsD~Et-~lSA-DdLRINLWnlei~d~sFnIVDIKP~nm--------------------EeLteVITsaE 220 (433)
T KOG1354|consen 165 YHINSISV--NSDKET-FLSA-DDLRINLWNLEIIDQSFNIVDIKPANM--------------------EELTEVITSAE 220 (433)
T ss_pred eEeeeeee--cCccce-Eeec-cceeeeeccccccCCceeEEEccccCH--------------------HHHHHHHhhhc
Confidence 67899988 888875 6666 788999999864322111111111110 00000233778
Q ss_pred ECC-CCcEEEEEeCCCcEEEEECCCCceEE----Eee------------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 313 QSP-DGKLLIIVGDNPDGLLVDSMTGKTIA----SLC------------GHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 313 ~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~----~l~------------~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
|+| ..++++-.+..|+|++.|++...+.- .+. +--..|..+.|+++|+++++-.. -+|+|||
T Consensus 221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 999 56778888899999999998443211 111 11235788999999999998644 5899999
Q ss_pred CCCCCceEEEEecCCC------------c---eEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 376 LRNLSESVAVLKGNLG------------A---IRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~------------~---v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+....+++.+++-|.. . -..++|+-++.++++|+..+.+++|++..|
T Consensus 300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9665788888876531 2 246789999999999999999999996554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=124.58 Aligned_cols=210 Identities=14% Similarity=0.133 Sum_probs=148.2
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (475)
...+.++|+.||.+++|....+....|.++... +.|+.+.| +..|+. +..+-.||.+.+|.+.. +.....+ |.
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk-~~i~d~dg~l~l~q~~p-k~~~s~qchn 2292 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNK-FGIVDGDGDLSLWQASP-KPYTSWQCHN 2292 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCc-eeeeccCCceeecccCC-cceeccccCC
Confidence 456889999999999999998887776666443 77888888 899987 77777999999999863 2222222 44
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe---CCCcEEEEECC-CCceEEEeecCCCCeEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG---DNPDGLLVDSM-TGKTIASLCGHLDFSFA 352 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~dg~i~iwd~~-~~~~~~~l~~h~~~v~~ 352 (475)
.... ...|-. ..+++++ .++.+.+||.. .+.....-..|.+.+++
T Consensus 2293 k~~~-----------------------------Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2293 KALS-----------------------------DFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred cccc-----------------------------ceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence 4444 444433 5566654 57889999965 22222222789999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec--
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-- 430 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-- 430 (475)
+++-|...+|++|+.+|.|++||++. .+.++.++. +. ...++++|+..|.|+||++.....+..+..
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 99999999999999999999999987 666666554 33 456899999999999999987654444332
Q ss_pred -cCC---CeEEEEEcCCCCeEEEEEecCC
Q 011924 431 -FFG---EISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 431 -~~~---~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+.| .+..=.+--.+.+|++++.|++
T Consensus 2411 ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2411 AKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhhcCceeeeccCceEEEecCCCC
Confidence 111 1111112223567788888763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-10 Score=109.63 Aligned_cols=233 Identities=14% Similarity=0.082 Sum_probs=166.7
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc------------eEEEeeecCCCCceeEEEEEeCCCCCeEEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV------------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~ 253 (475)
.+.+..|++| ..+++++||.+|.++|..+.+... ....+++.+|++.|..+.| +.+.+. |.++
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW--Ne~~QK-LTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW--NENNQK-LTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe--cccccc-cccc
Confidence 4567889999 788999999999999998865321 1223567899999999999 877776 8888
Q ss_pred eCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 254 NNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
..+|.|.+|-+-.+....... ...-|. +++|+.+|..++.+..||.|.
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~-----------------------------SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVV-----------------------------SMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEE-----------------------------EEEEcCCCcEEEEEEccCCEE
Confidence 899999999997776544332 344455 999999999999999999998
Q ss_pred EEECCCCceE-EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC------ceEEEEec----CCCceEEEEE-
Q 011924 331 LVDSMTGKTI-ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS------ESVAVLKG----NLGAIRSIRY- 398 (475)
Q Consensus 331 iwd~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~------~~~~~~~~----~~~~v~~l~~- 398 (475)
+=.+...+.. ..+++ .....+.|+||.+.++.+-..|.+.+||..... .+.....+ ....|..+.|
T Consensus 141 VGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 8766532211 12332 123468899999999888889999999975311 12122211 1123444444
Q ss_pred -------ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 399 -------TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 399 -------spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
-|+...||++-.+|.+.|-.-.+...+. +....-.+.++.|+++|..|++++.|..
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEecccEeecceecCCCcEEEEccCccc
Confidence 3577899999999999987655443332 2333467889999999999999977643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-08 Score=93.26 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=150.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEee---e--cCCCCceeEEEEE--eCC-CCCeEEEEEeCCCeEEEEECCCCee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRT---T--YDDNAITNAVEIY--GSP-SGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~---~--~~~~~~v~~l~~~--~s~-~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
+|+.++.. ..|.|.++|..+......-.- . ......+....+. |++ +|.. ++..| -|.+.+.+...+-.
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~-ia~VS-RGkaFi~~~~~~~~ 353 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY-IALVS-RGKAFIMRPWDGYS 353 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcE-EEEEe-cCcEEEECCCCCee
Confidence 77777764 578999999876554311100 0 0011111111110 122 4554 55554 45666666544333
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC-cEEEEECCCCceEEEeecCCC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg-~i~iwd~~~~~~~~~l~~h~~ 348 (475)
....++..|. -..+..+++-++.|..|| .+-|+|.++++ +..+...-+
T Consensus 354 -iqv~~~~~Vr-----------------------------Y~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg 402 (668)
T COG4946 354 -IQVGKKGGVR-----------------------------YRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG 402 (668)
T ss_pred -EEcCCCCceE-----------------------------EEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCcc
Confidence 2344555677 667777778899999998 88999988775 456666788
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC----eEEEEECCCCee
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD----FVHVYDVKSGYE 424 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg----~i~iwd~~~~~~ 424 (475)
.|.++..+|+|++++.++....+-+.|+.+ +.+...-+...+-|+.+.|+|+++++|-+-.+| .|++||+.+++.
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999999999999999999999999999987 565555555667899999999999999998776 699999988765
Q ss_pred EEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 425 KEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 425 ~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
... ....+.-.+.+|.|||++|.--
T Consensus 482 y~v-TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDV-TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEe-cCCcccccCcccCCCCcEEEEE
Confidence 433 3344555678899999998754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-08 Score=96.78 Aligned_cols=197 Identities=15% Similarity=0.244 Sum_probs=135.0
Q ss_pred EecCceEEEEeCCCCCce--EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-----------CCeEEEEECCCCeeee
Q 011924 205 GGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-----------DCGVRDFDMGKYQLSK 271 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-----------dg~v~iwd~~~~~~~~ 271 (475)
+|.-+.|++|.....+.. ...+.+.. ...+.+.+++-|.-+|+.++. ..++++.+++...+.-
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 466788999987632211 10111111 123444447777766665533 2467788887556666
Q ss_pred eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCC
Q 011924 272 HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDF 349 (475)
Q Consensus 272 ~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~ 349 (475)
.+...+||. ++.|+|+|+-++++. .--.+.|+|++ ++++..+. +++
T Consensus 266 ~L~k~GPVh-----------------------------dv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egp 313 (566)
T KOG2315|consen 266 PLLKEGPVH-----------------------------DVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGP 313 (566)
T ss_pred ecCCCCCce-----------------------------EEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCC
Confidence 666788899 999999999887764 34578899986 66766654 567
Q ss_pred eEEEEEecCCCEEEEEeC---CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC------CCeEEEEECC
Q 011924 350 SFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVK 420 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~------dg~i~iwd~~ 420 (475)
=.++-|+|.|++++.++. -|.+.|||+.+ .+++..+.... -+-+.|+|||+++++++. |+.++||+.
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy- 389 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY- 389 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-
Confidence 778899999999998865 57899999987 77777777654 356889999999998874 577999996
Q ss_pred CCeeEEEEeccCCCeEEEEEcC
Q 011924 421 SGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+|..+.... ...+...+.|-|
T Consensus 390 tG~~l~~~~-f~sEL~qv~W~P 410 (566)
T KOG2315|consen 390 TGSLLHEKM-FKSELLQVEWRP 410 (566)
T ss_pred cCceeehhh-hhHhHhheeeee
Confidence 454443221 222567777765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-07 Score=103.84 Aligned_cols=241 Identities=10% Similarity=0.088 Sum_probs=144.1
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCC------------CceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDN------------AITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~------------~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
++.++++-..++.|++++..... . ..... +.. ..-..|++ .++++.++++-...+.|+++|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~-i--~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNF-I--VQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCE-E--EEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCCceEEEEec
Confidence 46678888888999999976422 1 11111 110 12356777 7877765666666788999998
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.++.. .++...+...+...+... +. ...+..-..++++| ++.++++.+.++.|++||..++... .+
T Consensus 654 ~~~~V-~tlag~G~~g~~~~gg~~----------~~-~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 654 VNETV-RTLAGNGTKGSDYQGGKK----------GT-SQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred CCCEE-EEEeccCcccCCCCCChh----------hh-HhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 77543 333211100000000000 00 00000111789999 5666677778889999998776542 22
Q ss_pred ecC---------------CCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCCceEEE------------Eec-------
Q 011924 344 CGH---------------LDFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLSESVAV------------LKG------- 388 (475)
Q Consensus 344 ~~h---------------~~~v~~~~~sp~g~~l~-t~s~dg~v~iwd~~~~~~~~~~------------~~~------- 388 (475)
.+. -.....++++|++..|+ +-+.++.|++||+.+....+.. +..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 211 12356799999988554 5556789999999753221111 000
Q ss_pred -CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-------------ccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 389 -NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-------------DFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 389 -~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.......++++++|+++++-+.++.|++||..++....... .......+++++++|+.+++.+.+.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 01124589999999988888889999999998875543221 1123578999999998666655555
Q ss_pred Cc
Q 011924 455 TY 456 (475)
Q Consensus 455 ~~ 456 (475)
.+
T Consensus 881 ~I 882 (1057)
T PLN02919 881 LI 882 (1057)
T ss_pred EE
Confidence 44
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-06 Score=80.99 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=139.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeC-CCCCeEEEEEeCCCeEEEEECCCCeeeeeeec-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS-PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF- 275 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s-~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~- 275 (475)
++.++++--..+.|+.|+........ ... .. ...+.+ . ++|. ++.+.. +.+.++|..+++.......
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~--~~-~~G~~~--~~~~g~--l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV---IDL--PG-PNGMAF--DRPDGR--LYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE---EES--SS-EEEEEE--ECTTSE--EEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE---Eec--CC-CceEEE--EccCCE--EEEEEc-CceEEEecCCCcEEEEeecc
Confidence 45667777788999999987654331 111 11 455566 5 5653 444444 4456669988866544442
Q ss_pred -----cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC--------CcEEEEECCCCceEEE
Q 011924 276 -----PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN--------PDGLLVDSMTGKTIAS 342 (475)
Q Consensus 276 -----~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--------g~i~iwd~~~~~~~~~ 342 (475)
....+ .+++.|+|++.++.... |.+..++.. ++....
T Consensus 80 ~~~~~~~~~N-----------------------------D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 80 DGGVPFNRPN-----------------------------DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTCSCTEEEE-----------------------------EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCCcccCCCc-----------------------------eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 12233 89999999977776533 557777766 554433
Q ss_pred eecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCCc------eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLSE------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~-t~s~dg~v~iwd~~~~~~------~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
.. .......++|+|+++.|+ +-+..+.|..+++..... ....+....+..-.+++.++|++.++....+.|.
T Consensus 130 ~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 130 AD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp EE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 33 456688999999998776 556678899999864333 1112222223477899999999888777788999
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEe
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISF-SPDTESLFIGVW 452 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~ 452 (475)
+++.. |+.+..+......+++++| -|+.+.|++.+.
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 99976 8887777765568999999 578888888763
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-07 Score=89.56 Aligned_cols=279 Identities=13% Similarity=0.099 Sum_probs=166.5
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...||+.. ++.+..++..+++..-..++.+.+ ..+...++..+++++.+|.+..+|..+.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~------------------~~~p~v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERL------------------SGGVGADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCc------------------ccceEEcCCEEEEEcCCCEEEEEECCCCc
Confidence 34566654 467888887777654333332211 11233467888889999999999988776
Q ss_pred ceEEEeeecCCCCceeE-EEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccE-Ee-------ccCCceE---
Q 011924 221 VSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV-NV-------SSSYCII--- 288 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~-l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-~~-------s~~~~~l--- 288 (475)
........ +.+.+ ..+ .+.. ++.++.++.|..||.++++.+..+....+. .+ ..++..+
T Consensus 127 ~~W~~~~~----~~~~~~p~v----~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~ 197 (377)
T TIGR03300 127 ELWRAKLS----SEVLSPPLV----ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGF 197 (377)
T ss_pred EeeeeccC----ceeecCCEE----ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEEC
Confidence 55432221 11211 111 2333 566668999999999999887665532211 10 0111111
Q ss_pred --EEEEEeecccceEEEEeee-----------eeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q 011924 289 --LLCRLLNFMTEKVIICLLC-----------LQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 353 (475)
Q Consensus 289 --~~~~v~d~~~~~~~~~~~~-----------i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~ 353 (475)
..+..+|..+|+....... +..+.-+| .+..+++++.++.++.+|..+|+.+..... .. ....
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p 275 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGP 275 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCc
Confidence 1455667777765432210 00011122 355777788899999999999988776652 11 1112
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
. ..+..++.++.+|.+..+|..+ ++.+-.... ......+... .+..|++++.+|.|+++|..+|+.+.....+.
T Consensus 276 ~--~~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 276 A--VDDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred e--EeCCEEEEECCCCeEEEEECCC-CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 2 2567788888999999999976 554433321 1112222222 46688999999999999999999888776555
Q ss_pred CCe-EEEEEcCCCCeEEEEEecCCc
Q 011924 433 GEI-SGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 433 ~~i-~~l~fspdg~~l~~~~~D~~~ 456 (475)
..+ ....+. + ..|++++.||.+
T Consensus 351 ~~~~~sp~~~-~-~~l~v~~~dG~l 373 (377)
T TIGR03300 351 SGIASPPVVV-G-DGLLVQTRDGDL 373 (377)
T ss_pred CccccCCEEE-C-CEEEEEeCCceE
Confidence 332 333333 2 468888888765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=94.69 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=126.4
Q ss_pred EEEEEE--cCcE-EEEEec---CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEE
Q 011924 192 VSTLAV--KDKL-LVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFD 263 (475)
Q Consensus 192 v~~l~~--~~~~-lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd 263 (475)
+..-.| +|+. ++..+. ...|+++++.+.... .+. ...+......| +|+|+.++++.+.+ ..|.+++
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---~lt-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---KIA-SSQGMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---EEe-cCCCcEEeeEE--CCCCCEEEEEEccCCCcEEEEEE
Confidence 444555 7764 554333 356888888665433 222 23444556677 99999877776555 4577778
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC---CcEEEEECCCCceE
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTI 340 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~ 340 (475)
+.+++.......+.... ...|+|||+.|+..+.. ..|+++|+.+++..
T Consensus 264 l~~g~~~~LT~~~~~d~-----------------------------~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 264 TNTKTLTQITNYPGIDV-----------------------------NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred CCCCcEEEcccCCCccC-----------------------------ccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 87776544333333222 45799999988887643 36888898877764
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQD---------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
+... .... ...|+|+|+.|+..+.. ..|.+.|+.. +. .+.+... +......|+|||+.|+..+..
T Consensus 315 rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 315 QVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred eCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 3332 1112 24899999998877653 2577788865 33 3445443 233468999999988776543
Q ss_pred ---CeEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 412 ---DFVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 412 ---g~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
..+.+.++.. .....+....+.+...+
T Consensus 389 ~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 389 GNQSALGIIRLNY-NKSFLFPLKVGKIQSID 418 (419)
T ss_pred CCcEEEEEEecCC-CeeEEeecCCCccCCCC
Confidence 2477777754 33344444445555443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=106.91 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=161.2
Q ss_pred cccccceeEEEEEE-----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe
Q 011924 184 LEGFTQTQVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (475)
Q Consensus 184 ~~~~~~~~v~~l~~-----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~ 258 (475)
+.+...-+|-.+.| ....+|+.+ ...-.+|++........-..+.+|...|+.+.| +|...-++++++-|-.
T Consensus 62 l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 62 LHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTY 138 (1081)
T ss_pred eeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceecccc--CCCCCcceeecccccc
Confidence 34444445555555 334555544 445668998766655445677899999999999 8888778999999999
Q ss_pred EEEEECCCCe-eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 259 VRDFDMGKYQ-LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 259 v~iwd~~~~~-~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
|..||++... .+..+. -..... .++|+.....+.+.+....|++||++.
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~as-----------------------------qVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSAAS-----------------------------QVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred ceeeeccCCCcceeeeecccccCc-----------------------------eeeecccCcchhhhccCCceEEEeccC
Confidence 9999997633 222222 111222 678888544555556777899999995
Q ss_pred C-ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC--CEEEEEcCCC
Q 011924 337 G-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPAD 412 (475)
Q Consensus 337 ~-~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg--~~la~~~~dg 412 (475)
| .++..+++|...|..++|.. .-..+.+.+.|++|+.||..+..+.-........+|..-+|-|-| .++.---.+.
T Consensus 190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence 5 57889999999999999976 445688899999999999976444333333445678888888844 3443333334
Q ss_pred eEEEEECCC----------CeeEEEEeccCCCeEEEEEcCCCC----------eEEEEEecCCcc
Q 011924 413 FVHVYDVKS----------GYEKEQEIDFFGEISGISFSPDTE----------SLFIGVWDRTYG 457 (475)
Q Consensus 413 ~i~iwd~~~----------~~~~~~~~~~~~~i~~l~fspdg~----------~l~~~~~D~~~~ 457 (475)
.|.+++.++ ...+..+.+|...|....|-..++ .|++-+.|.+++
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 566655432 245777888887776665544322 456666666553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-06 Score=95.58 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=129.5
Q ss_pred EEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEEee------ecCC-------CCceeEEEEEeCCCCCeEEEEEeCC
Q 011924 193 STLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCSRT------TYDD-------NAITNAVEIYGSPSGAVHFTASNND 256 (475)
Q Consensus 193 ~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~~~------~~~~-------~~~v~~l~~~~s~~g~~~l~s~s~d 256 (475)
..+++ +++.| ++-..++.|+++++.+......... ..+. -..-..+++ +|++..++++.+.+
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~ 704 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQ 704 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCC
Confidence 45555 56654 4445567888888765432211000 0000 001245777 88555568888888
Q ss_pred CeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE-EEeCCCcEEEEECC
Q 011924 257 CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI-IVGDNPDGLLVDSM 335 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~-~~~~dg~i~iwd~~ 335 (475)
+.|++|+..++... .+...+... ..++. .. ..........++++|+|+.|+ +-+.++.|++||+.
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~-~~~g~-----------~~-~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYER-NLNGS-----------SG-TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccc-cCCCC-----------cc-ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 99999999776543 221110000 00000 00 000011222789999998554 55567899999998
Q ss_pred CCceEEEeec---------------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec------
Q 011924 336 TGKTIASLCG---------------------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG------ 388 (475)
Q Consensus 336 ~~~~~~~l~~---------------------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~------ 388 (475)
++.......+ .......++++|+|+++++-+.+++|++||..+ +. +..+.+
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G~ 848 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAGF 848 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EEEEeccCCcCC
Confidence 7653211100 011346889999999888888999999999865 33 323322
Q ss_pred --------CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 389 --------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 389 --------~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
.......++++++|+++++-+.++.|++||+.++..
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112467899999999888888999999999988754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-07 Score=98.91 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=158.0
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEE----eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICK----HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
...|.++.+ +..-|+.+..+|.|.+. +....... ....-...|.+.+| |||+.. ++..+.+++|.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~W--SPD~El-la~vT~~~~l~~m 147 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE----IVGSVDSGILAASW--SPDEEL-LALVTGEGNLLLM 147 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE----EEEEEcCcEEEEEE--CCCcCE-EEEEeCCCEEEEE
Confidence 357889988 78888999999999998 44433322 22334556899999 999996 6666678888776
Q ss_pred ECCCCeeeeeee-------ccccEE---------eccCCceEEEEEEeecc-----cceEEEEeeeeeeEEECCCCcEEE
Q 011924 263 DMGKYQLSKHFR-------FPWPVN---------VSSSYCIILLCRLLNFM-----TEKVIICLLCLQHSSQSPDGKLLI 321 (475)
Q Consensus 263 d~~~~~~~~~~~-------~~~~v~---------~s~~~~~l~~~~v~d~~-----~~~~~~~~~~i~~~~~sp~g~~l~ 321 (475)
. ..+..+.... ....|+ |...+..-+.-.+-++. .+... ....-..++|..||.++|
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFA 225 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEE
Confidence 4 3444443332 111222 22221111110011110 00000 111223789999999999
Q ss_pred EEeC------CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCCceEEEEe----c
Q 011924 322 IVGD------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLK----G 388 (475)
Q Consensus 322 ~~~~------dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~~~~----~ 388 (475)
+.+- ...++||+ +.|....+-+.-.+--.+++|.|.|++||+... ...|.+|.- | +-....+. .
T Consensus 226 Vss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-N-GLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-N-GLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-C-CcEeeeEecCCCC
Confidence 8763 35789999 457765555544444567899999999998865 345666764 4 33333332 2
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe-eEEEEecc--CCCeEEEEEcCCC-CeEEEEEecCCc
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDF--FGEISGISFSPDT-ESLFIGVWDRTY 456 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~--~~~i~~l~fspdg-~~l~~~~~D~~~ 456 (475)
....|..++|++|+..||..-.+. |.+|-..+.. -+++.... ...+..+.|+|.. ..|.+...++.+
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 346789999999999999987665 9999987753 23333322 2345669999954 446666654444
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-08 Score=87.21 Aligned_cols=242 Identities=13% Similarity=0.148 Sum_probs=164.2
Q ss_pred ecccceeE-EecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 130 HFQLRNLV-WATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 130 h~~lr~l~-~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
|+.+.|.. .-+....|+.+ .+..+++|....... .-|+ +.+..+++++++++ +...|+.|
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---------~wps-------I~~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---------YWPS-------IYHYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccc---------cCch-------hhhhCCCCceEeeeeccceEEEEE
Confidence 44444433 23333445554 457788886443211 1111 22334557888888 77889999
Q ss_pred ecCceEEEEeCCCCC-ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccC
Q 011924 206 GFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSS 284 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~ 284 (475)
-.+|++.-+.+...- .....+....|...+..+-| +-.-.. +++.+.|..+.---.+.+..+..+.......
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if--~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t---- 159 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF--SLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPAS---- 159 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe--cCCcee-EEEeccccceEEEeeccCCcccceEeeccCC----
Confidence 999999888764322 12223556678888998888 555555 7777788776544445555554443222222
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC--CCCceEEEeecCCCCeEEEEEecCCCEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS--MTGKTIASLCGHLDFSFASAWHPNGVTF 362 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~~~l~~h~~~v~~~~~sp~g~~l 362 (475)
++.+.-. +..+|...|.|.+..+ ..-.++.++.+|.+.+.+++|.|....|
T Consensus 160 -------------------------~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 160 -------------------------ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred -------------------------CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 2222211 4455555666655544 3456788999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+|..|..+.+||+--.......+.+|...|+.+..-+--+.|.+++.||.|.+|++..
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999754556778889999999999888888999999999999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-06 Score=95.47 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=134.9
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE----ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDF----DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw----d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
..+.|.++.+ -++... ++.+..+|.|.+. +......-..-.....|.
T Consensus 74 ~~~~ivs~~y--l~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-------------------------- 124 (928)
T PF04762_consen 74 PNDKIVSFQY--LADSES-LCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-------------------------- 124 (928)
T ss_pred CCCcEEEEEe--ccCCCc-EEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE--------------------------
Confidence 3455666666 677665 6667788988888 444333222222455666
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECC---------------C--------CceEEEeec------------------
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSM---------------T--------GKTIASLCG------------------ 345 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~---------------~--------~~~~~~l~~------------------ 345 (475)
+++||||+.+|+.++.++++.+.... . |+.-..|.|
T Consensus 125 ---a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~ 201 (928)
T PF04762_consen 125 ---AASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV 201 (928)
T ss_pred ---EEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence 99999999999999988888876421 0 111111111
Q ss_pred ------CCCCeEEEEEecCCCEEEEEeC---C---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC---
Q 011924 346 ------HLDFSFASAWHPNGVTFATGNQ---D---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP--- 410 (475)
Q Consensus 346 ------h~~~v~~~~~sp~g~~l~t~s~---d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~--- 410 (475)
+.+.-..++|-.||.+||+.+- . ..+|||+-. +....+-..-.+--.+++|.|.|.+||+...
T Consensus 202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 1223456889999999999874 2 579999974 4443333333333457899999999998764
Q ss_pred CCeEEEEECCCCeeEEEEec----cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE-eecceeeecc
Q 011924 411 ADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLFIGVWDRTYGSLLEYG-RCRNYSYLDS 473 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~-~~~~~~~l~~ 473 (475)
...|.+|. ++|-....+.- ....|..+.|++|+..||+...|. +++. ++..+.||+.
T Consensus 280 ~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-----vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 280 RHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-----VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-----ceEEEeeCCEEEEEE
Confidence 35688888 67765555443 235799999999999999988765 4444 4444567764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-07 Score=91.65 Aligned_cols=283 Identities=17% Similarity=0.111 Sum_probs=183.9
Q ss_pred ecccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 130 HFQLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 130 h~~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
|.+|+..-|.-..+.|... .++.+.+....+... -.+.+|..+++.-.-.+.+++ +...|.-+.| ..+.|-+..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~--d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT--DLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCC--cccccccccccccchhhhhcc-CcceEEEEEeccccccccccC
Confidence 4556656677666666664 345555544322211 122222111111111111222 3346777788 567888899
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCc
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYC 286 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~ 286 (475)
.+|-|.||-+..+.... .-+.....+.|.+++| +.+|.. +.....||.|.+=.+...+.-..--......
T Consensus 91 t~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsW--n~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~------ 160 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSW--NLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLA------ 160 (1189)
T ss_pred CCceEEEEeeecccHHH-HHhhCcCccEEEEEEE--cCCCcE-EEEEEccCCEEEEeeccceecchhcchhecc------
Confidence 99999999987655321 1122334567888888 999997 7777899998887776544322111122233
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-------ceEEE----eecCCCCeEEEEE
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-------KTIAS----LCGHLDFSFASAW 355 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-------~~~~~----l~~h~~~v~~~~~ 355 (475)
++.|++|.+.++.+-.+|.++++|.+.. .+... +......+-.+.|
T Consensus 161 -----------------------hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 161 -----------------------HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred -----------------------ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 7789999999999989999999997532 11111 1112233555666
Q ss_pred e--------cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---------CeEEEEE
Q 011924 356 H--------PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---------DFVHVYD 418 (475)
Q Consensus 356 s--------p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---------g~i~iwd 418 (475)
. |+...||.+-..|.+.|..-.+...|+..-.+ -.+..+.|+++|.+||+++.+ +.|++|.
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 3 47789999999999999887775666655554 467899999999999998864 3677777
Q ss_pred CCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 419 VKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.-|..+..+......|++++|-..|-.++.+.
T Consensus 296 -p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 296 -PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred -cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 34667777777778899999998888888765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=110.39 Aligned_cols=241 Identities=16% Similarity=0.163 Sum_probs=170.7
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-eEEEEECC-
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMG- 265 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-~v~iwd~~- 265 (475)
...+|++| ..+.|+.|+..|+|+++++.++.-. ....+|+++|+.|.- +.+|..+|.+++... -..+|++.
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccc--cCCcceeeeeccccCchHHHhcccc
Confidence 35677888 7889999999999999999876544 556789999999988 899998777666555 56799985
Q ss_pred CCeeeeeeeccccEEeccCC--ceEE----EEEEeecccceEEEEee--------eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 266 KYQLSKHFRFPWPVNVSSSY--CIIL----LCRLLNFMTEKVIICLL--------CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~--~~l~----~~~v~d~~~~~~~~~~~--------~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
++...+.|.....|.|+... +.++ ...+||..++....+.. .-.++.|||+.++++ .|| .+
T Consensus 1177 ~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vL 1251 (1516)
T KOG1832|consen 1177 TGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VL 1251 (1516)
T ss_pred ccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--ee
Confidence 47777888877888887542 2222 57899999887655422 124788999988876 444 68
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC-
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP- 410 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~- 410 (475)
||.+..+.++.|......+. -.|||+|+.++.-+ .|||+|+ .+.++....-. -..+.|...|..++..-.
T Consensus 1252 WDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RT-F~lLh~VP~Ld--qc~VtFNstG~VmYa~~~~ 1322 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRT-FKLLHSVPSLD--QCAVTFNSTGDVMYAMLNI 1322 (1516)
T ss_pred eeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHH-HHHHhcCcccc--ceEEEeccCccchhhhhhh
Confidence 99998888888775554443 35999999998875 4899998 67676665432 257889888887765431
Q ss_pred -C---------------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 411 -A---------------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 411 -d---------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
| ...+-||...-..+.++ .....+..++-+|...+|.+-
T Consensus 1323 ~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi-~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1323 EDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI-PVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred hhhhhhhcccccccchhhhhccccccccccceee-ecccchhhhhcCCccceEEEE
Confidence 0 12333443333333333 234567788888888888765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-09 Score=112.22 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=139.1
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
|.++.- +|.... .++|+.||.|++|....++.+..++.. ..|+ .+.
T Consensus 2211 v~r~~s--Hp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt-----------------------------r~~ 2258 (2439)
T KOG1064|consen 2211 VRRMTS--HPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT-----------------------------RSR 2258 (2439)
T ss_pred eeeecC--CCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhh-----------------------------hhh
Confidence 444444 777665 899999999999999988888887743 4444 778
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCCceEEEEecC
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~~~~~~~~~~~ 389 (475)
|+.+|+.+.++..||.+-+|.+. .++....+.|........|-. ..+++++ .++.+.+||.-.+...-..-+.|
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence 99999999999999999999976 777778888998888888865 6677765 46789999986433322223789
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+.++++++-|..+.|++|+.+|.|.+||++..+.+..+.. +. ...+++.|+..|.++
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 99999999999999999999999999999987665544432 33 445677777776665
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.5e-09 Score=91.17 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=74.9
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRY 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~ 404 (475)
+..+.|+++..+.+..-......|.+++-|| ..+++++|+.||.+.+||+|+..-++..++.|..+++.+.|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 3456676664333222122234599999999 6678889999999999999997778888899999999999999 6689
Q ss_pred EEEEcCCCeEEEEECCC
Q 011924 405 MATAEPADFVHVYDVKS 421 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~ 421 (475)
|.+++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999664
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-08 Score=91.79 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=103.7
Q ss_pred cCcEEEEEecCceEEEEeCCCCCc-eEEEeeecCCCCceeEEEEEeCCCCCeEEE--EEeCCCeEEEEECCCCeeeeeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFT--ASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~--s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
.+++|+.+.......++++..... ..+.... .-...-+++.+ ..+....++ .++....+.+|....+.+...+.
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~--~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG 149 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISF--IREDTSVLVADKAGDVYSFDILSADSGRCEPILG 149 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeee--eeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence 556666666666665666544332 1111111 11112233333 222222222 23455566777766667666777
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEE
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFAS 353 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~ 353 (475)
|...+. .++|+||+++++++..|..|++-.......+..+. ||+..|..+
T Consensus 150 hvSml~-----------------------------dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 150 HVSMLL-----------------------------DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred hhhhhh-----------------------------eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 888888 99999999999999999999998876555555554 799999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
+.-++ ..|++|+.|++|++||+++ ++.+.++.
T Consensus 201 sl~~~-~~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN-YLLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred eeccC-ceeeecCCCCcEEEEeccc-CCcccccc
Confidence 99775 4589999999999999988 66555554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=99.08 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=138.5
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (475)
++..++.||....+..+|+.+.... +...-..+.|.-+ ..+++. +.+|...|+|.+-|.++.+.++++. |.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~im----R~Nnr~-lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIM----RYNNRN-LFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---eeeeccCCceEEE----EecCcE-EEeecccceEEeecCCcCceeeeeeccc
Confidence 6778999999999999998865433 2322222234433 346664 8899999999999999999999998 88
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------CCcEEEEECCCCceEEEeecCC
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------NPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
+.+. +|+-.|++|+++|. |..|+|||+|..+.+.-+.-+.
T Consensus 218 ~siS-------------------------------DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~ 266 (1118)
T KOG1275|consen 218 GSIS-------------------------------DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY 266 (1118)
T ss_pred ccee-------------------------------eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc
Confidence 8887 77788999999874 5678999999887776666555
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc---eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 348 DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 348 ~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
++ .-+.|+| -...++++++.|.+.+-|....+. .+..+......+..+.+|++|..||.|..+|.|++|-
T Consensus 267 ~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 267 GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Cc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 54 3478899 456788889999999999443333 2334444455699999999999999999999999997
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=95.68 Aligned_cols=182 Identities=17% Similarity=0.250 Sum_probs=134.2
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
-.++|.++.+.+|+.|+..|.|++.+....- .....|.+. ..+|.+ +++||.||+|.|..+-+.+.
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-----~~~~~~s~~--------~~~Gey-~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNP-----KTNFDHSSS--------ILEGEY-VASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCcc-----ccccccccc--------ccCCce-EEEecCCCcEEEeeccCCcc
Confidence 3577888899999999999999998875432 111122221 346776 99999999999999999998
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-----CcEEEEEeCCCcEEEEECC-CC-ceEEE
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-----GKLLIIVGDNPDGLLVDSM-TG-KTIAS 342 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-----g~~l~~~~~dg~i~iwd~~-~~-~~~~~ 342 (475)
...+.+..++. +++++|+ .+.+++||..| +.++.-+ -| +....
T Consensus 106 ~~~~df~rpik-----------------------------sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 106 ITQYDFKRPIK-----------------------------SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred ceeEecCCcce-----------------------------eEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 88899999999 9999997 67899999888 7777643 12 22224
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCce------EEEEEccCCCEEEEEcCCCeEEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI------RSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v------~~l~~spdg~~la~~~~dg~i~i 416 (475)
+..-.++|.++.| .|+++|-++.+| |+|||+.. .+.+..++.....+ ..+.|.++.+ |+.|=.| +|+|
T Consensus 156 l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i 229 (846)
T KOG2066|consen 156 LSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKI 229 (846)
T ss_pred eecCccceEEEEe--cCcEEEEecCCC-cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEE
Confidence 5566789999999 688999998887 99999976 55555555433333 3577776654 5555444 6999
Q ss_pred EECCC
Q 011924 417 YDVKS 421 (475)
Q Consensus 417 wd~~~ 421 (475)
..++.
T Consensus 230 ~~I~~ 234 (846)
T KOG2066|consen 230 CSIKK 234 (846)
T ss_pred EEEec
Confidence 88873
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=87.14 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=153.9
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE-CCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD-MGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd-~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
....++...+++... -|...- +++.+.|.++|+|- ...++.-..+. .+.+++
T Consensus 18 ~~~eG~~d~vn~~~l--~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~---------------------- 72 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAIL--IPKEEG-VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCS---------------------- 72 (404)
T ss_pred hhhcCchhhhhhhee--ccCCCC-eEEccccceeeeEEeccccccCchhhhhCCCCce----------------------
Confidence 344566667777666 454444 88999999999994 34455444443 466777
Q ss_pred EEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC----CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM----TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~----~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
++++.+....|++|-.+|++.-+.+. ....++....|..+++.+-|+-....+++.+.|..+.---.+.
T Consensus 73 -------~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 73 -------AMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred -------EeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 88999999999999999999887654 2334445556888888888877777777777665433111110
Q ss_pred ----------------------------------------CCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 379 ----------------------------------------LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 379 ----------------------------------------~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.-.++..+.+|.+.+++++|.|..+.|.+|..|..|.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 1235667788999999999999999999999999999999
Q ss_pred CCCCe-eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc-eEEEEEeecceeeecc
Q 011924 419 VKSGY-EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG-SLLEYGRCRNYSYLDS 473 (475)
Q Consensus 419 ~~~~~-~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~-~ll~~~~~~~~~~l~~ 473 (475)
+--.+ ......+|...|..+..-+-.+.|++++.|+.+- .-+.-.|....+||++
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s 282 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDS 282 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcccccc
Confidence 86543 2345567888899998888889999999997663 2233345555666654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-06 Score=82.43 Aligned_cols=218 Identities=10% Similarity=0.062 Sum_probs=142.8
Q ss_pred eeEEEEEE----cCcEEEE-----EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe------
Q 011924 190 TQVSTLAV----KDKLLVA-----GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN------ 254 (475)
Q Consensus 190 ~~v~~l~~----~~~~lvs-----g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s------ 254 (475)
..|+.+++ ++..|+. ++..+.+++|.+..+.......++. +..+.+.+.+.|+++++-.-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-----~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-----VSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-----ecccEEEEecCCceEEEEEEEeeecc
Confidence 34566665 3334443 4677899999998655543333322 23344444888887555331
Q ss_pred ----CCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCc
Q 011924 255 ----NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPD 328 (475)
Q Consensus 255 ----~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~ 328 (475)
....+.+++++...+........+|. ..+|+|.++.+++.+ ....
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVh-----------------------------df~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEKDLKDPVH-----------------------------DFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred cceeccceEEEEeecccccceeccccccce-----------------------------eeeecccCCceeEEecccccc
Confidence 12456777776433322223456777 999999998887765 5667
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE
Q 011924 329 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
+.++|++.. .... .....=..+.|+|.+++++.++-| |.+.+||......++..+.+. ..+-+.|+|||.++
T Consensus 300 ~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~ 374 (561)
T COG5354 300 VSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY 374 (561)
T ss_pred eeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEE
Confidence 889998754 3333 344455667899999999997764 579999997533444455544 34567899999998
Q ss_pred EEEc------CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 406 ATAE------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 406 a~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.++. .|..|.|||+.... .. +.+.+.|.|.|++..+.+.+.
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EecCCCcccccCcceEEEEecCch-hh-------hhhhccccCCcccceeeccCC
Confidence 8764 36789999986532 21 566788888888887776665
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-06 Score=81.10 Aligned_cols=276 Identities=11% Similarity=0.106 Sum_probs=169.1
Q ss_pred eecccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 129 LHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 129 ~h~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
..+..++..+++-+..+++.....|..|..-+... +..+ ....|.-+.+ .+++|++=.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~------------------~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRF------------------RHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh--eeee------------------ecCCceecccCcccceeeeec
Confidence 34566777888888888888888899997655442 1111 1123444444 777777754
Q ss_pred cCc---------------eEEEEeCCCCCceEEEeeecCCCCcee-EEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 207 FQG---------------ELICKHLDRPGVSFCSRTTYDDNAITN-AVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 207 ~dg---------------~i~vw~~~~~~~~~~~~~~~~~~~~v~-~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
..+ .+.+||...+...+......... ..+ -+.| +.+.++ ++-- -...+.++++ +...-
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~--s~~D~y-~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKF--SIDDKY-VARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeee--eecchh-hhhh-ccCeEEEEec-CCccc
Confidence 433 48899987766553322222111 123 5666 666654 3222 2346888887 33221
Q ss_pred -eeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEE-----EeCCCcEEEEECCCCceE
Q 011924 271 -KHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLII-----VGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 271 -~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~-----~~~dg~i~iwd~~~~~~~ 340 (475)
..+. .+..+. ..+|+|. +..||. .+..+.+++|.+..++.+
T Consensus 165 ~~p~~~lr~~gi~-----------------------------dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 165 EHPFKNLRPVGIL-----------------------------DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred cCchhhcccccee-----------------------------eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 1111 122333 7788884 334443 356788999999877665
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEe-----------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGN-----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s-----------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
.+-.-....-..+.|++.|++|+.-- ....+.|++++. ..+.......++|...+|.|.++.+++.+
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEe
Confidence 54433344445689999998876431 124688888864 33333335578999999999887665544
Q ss_pred --CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 410 --PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 410 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
....+.++|++.. .. +....+.=..+.|||.+++++.++.|...|.+.-+..
T Consensus 294 g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 294 GYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 5678999998865 22 2223445556778888888888888877776655543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-05 Score=70.87 Aligned_cols=217 Identities=15% Similarity=0.132 Sum_probs=135.5
Q ss_pred eEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceE
Q 011924 136 LVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 211 (475)
Q Consensus 136 l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i 211 (475)
.+|......||++ ..+.|+.|+..++.... +...+ ...+++ .++.|+.+...+ +
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--------------------~~G~~~~~~~g~l~v~~~~~-~ 62 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--------------------PNGMAFDRPDGRLYVADSGG-I 62 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--------------------EEEEEEECTTSEEEEEETTC-E
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--------------------CceEEEEccCCEEEEEEcCc-e
Confidence 3466656777775 35889999987765433 22211 223333 355666665544 4
Q ss_pred EEEeCCCCCceEEEeee-cC-CCCceeEEEEEeCCCCCeEEEEEeCC--------CeEEEEECCCCeeeeeeeccccEEe
Q 011924 212 ICKHLDRPGVSFCSRTT-YD-DNAITNAVEIYGSPSGAVHFTASNND--------CGVRDFDMGKYQLSKHFRFPWPVNV 281 (475)
Q Consensus 212 ~vw~~~~~~~~~~~~~~-~~-~~~~v~~l~~~~s~~g~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~v~~ 281 (475)
.++++.+.......... .. .....+.+++ .|+|+. .++.... |.|..++.. ++...........+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v--d~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN- 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAV--DPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN- 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEE--cCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEecCccccc-
Confidence 55587766544322332 12 3456778888 999984 6665433 456667766 55444444444455
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE-EeCCCcEEEEECCCC-c-e-----EEEeecCCCCeEEE
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII-VGDNPDGLLVDSMTG-K-T-----IASLCGHLDFSFAS 353 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~-~~~dg~i~iwd~~~~-~-~-----~~~l~~h~~~v~~~ 353 (475)
.++|+|+++.|++ -+..+.|..+++... . . ...+....+..-.+
T Consensus 138 ----------------------------Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 138 ----------------------------GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp ----------------------------EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE
T ss_pred ----------------------------ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcc
Confidence 8999999987765 456778888888632 2 1 11222222347889
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE-ccCCCEEEEEc
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY-TSDGRYMATAE 409 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-spdg~~la~~~ 409 (475)
++.++|++.++....+.|.++|.. ++.+..+......+++++| .|+.+.|...+
T Consensus 190 ~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 190 AVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred eEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 999999988888888999999985 7778877776568999999 46766665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=96.20 Aligned_cols=203 Identities=14% Similarity=0.110 Sum_probs=142.5
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
.|.+++. +.+-+++++.|.+|++|.+...+ ...|.-+...|+.+|+.+.| -.+.+. +++ -||.|.+||.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf--L~~lr~-i~S--cD~giHlWDP 811 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF--LADLRS-IAS--CDGGIHLWDP 811 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee--eeccce-eee--ccCcceeecc
Confidence 4666655 67889999999999999987554 34566777889999999998 455443 444 5899999998
Q ss_pred CCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEE-eCCCcEEEEECCCCc
Q 011924 265 GKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIV-GDNPDGLLVDSMTGK 338 (475)
Q Consensus 265 ~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~-~~dg~i~iwd~~~~~ 338 (475)
-.++++.... ..+.+. .+..-| +..+++++ +...+++++|.+.+.
T Consensus 812 Figr~Laq~~dapk~~a~~-----------------------------~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGG-----------------------------NIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cccchhHhhhcCcccCCCc-----------------------------eeEecccCcchheeeeccchhhheeeeccccc
Confidence 7776654332 111111 122222 34444444 678899999999887
Q ss_pred eEEEee-----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 339 TIASLC-----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 339 ~~~~l~-----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
.+..++ +....+++++..|.|+.+|.+-..|+|.+.|.|+ +..+..+....-....++ .|..+.|+....|.+
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsdq~L~~saldHs 940 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSDQALAQSALDHS 940 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-CchhHHHHhhcccce
Confidence 666654 3456789999999999999999999999999998 776766665433333333 355667887777888
Q ss_pred EEE-EECCCCeeEEEEe
Q 011924 414 VHV-YDVKSGYEKEQEI 429 (475)
Q Consensus 414 i~i-wd~~~~~~~~~~~ 429 (475)
+.+ |-.-.|....+..
T Consensus 941 laVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 941 LAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eEeeehhcCCeeeeccC
Confidence 888 8766665444433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=88.69 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=84.9
Q ss_pred eEEECCCCcEEEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 310 HSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.+.+-.+...+.++.. ...+.+|....+.+ ..+-||-..+..++|+||+++|+|+..|..|||-........-...
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 4444444444444443 44445555444443 3456899999999999999999999999999998876533333334
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
-||..-|..++.-++ +.|++|+.|++|++||+.+|+.+..
T Consensus 191 lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence 568889999998765 5689999999999999999987644
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=62.71 Aligned_cols=39 Identities=38% Similarity=0.764 Sum_probs=37.0
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
|+++.++.+|...|.+++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=97.04 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=119.9
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-------Ceeeeeee-ccccEEeccCCceEEEEEEeecc
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
..+.+|...|.+++. -.+.+. +++++.|++|++|.++. ..+..++. |..+++
T Consensus 729 ~nf~GH~~~iRai~A--idNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~----------------- 788 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAA--IDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH----------------- 788 (1034)
T ss_pred ecccCcHHHhHHHHh--cccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCccc-----------------
Confidence 345577777777765 334443 99999999999999864 22334444 788888
Q ss_pred cceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec--CCCCeEEEEEec--CCCEEEEE-eCCCeEE
Q 011924 298 TEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHP--NGVTFATG-NQDKTCR 372 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp--~g~~l~t~-s~dg~v~ 372 (475)
.+.|-.+-+.++++ ||.|++||.--|+++..+.. ..+.+..+..-| +...++.| +...||+
T Consensus 789 ------------~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVK 854 (1034)
T KOG4190|consen 789 ------------DIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVK 854 (1034)
T ss_pred ------------ceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhe
Confidence 88888887777654 78899999887877664431 122233333334 44555555 6788999
Q ss_pred EEECCCCCceEEEEe-----cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 373 IWDLRNLSESVAVLK-----GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 373 iwd~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
++|.|. ..-+..++ +..+-+++++..|.|++||.|-.+|.|.+.|.++|..+....
T Consensus 855 l~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 855 LFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred eeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 999987 44443333 345678999999999999999999999999999998665443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-08 Score=88.97 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=112.4
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 251 TASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
++.+.+..|-+-+++++.. ..|.....|- ++.|...++++..|..+|.|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVf-----------------------------AlQf~~s~nLv~~GcRngeI~ 277 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVF-----------------------------ALQFAGSDNLVFNGCRNGEIF 277 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHH-----------------------------HHHhcccCCeeEecccCCcEE
Confidence 3444666777777776543 2333455555 778888899999999999999
Q ss_pred EEECCCC-----ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce---EEEEecCCCceE--EEEEc
Q 011924 331 LVDSMTG-----KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES---VAVLKGNLGAIR--SIRYT 399 (475)
Q Consensus 331 iwd~~~~-----~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~---~~~~~~~~~~v~--~l~~s 399 (475)
.+|++.+ .+.+.+. |...|+++..-. ++.+|.+.+.+|+|++||.|. -++ +..+.+|...-. -+...
T Consensus 278 ~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 278 VIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred EEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccc
Confidence 9999854 4556665 888899987766 788999999999999999997 444 777777754222 23345
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCeeEEEEec
Q 011924 400 SDGRYMATAEPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
+...++++++.|...+||.+++|..+.++.-
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 6667888899999999999999988877653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-05 Score=70.40 Aligned_cols=222 Identities=16% Similarity=0.075 Sum_probs=134.1
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
++.|..++..+++..-...+... . ....+..+ .++.+++++.++.|++||..+.+........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~---------------~-~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG---------------I-GGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS---------------C-SSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS
T ss_pred CCEEEEEECCCCCEEEEEECCCC---------------C-CCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc
Confidence 45677788777755443333110 1 11222233 7778888889999999999877765543331
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-eccccEE-eccCCceEEEEEEeecccceEEEEee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFPWPVN-VSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~-~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
...... ... .+.. ++.++.++.|+.+|..+++.+... ....+.. +..
T Consensus 66 ~~~~~~---~~~----~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~----------------------- 114 (238)
T PF13360_consen 66 GPISGA---PVV----DGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS----------------------- 114 (238)
T ss_dssp SCGGSG---EEE----ETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB------------------------
T ss_pred ccccce---eee----cccc-cccccceeeeEecccCCcceeeeecccccccccccc-----------------------
Confidence 111111 122 2333 555557889999999999988874 3221111 000
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCe----------EEEEEecCCCEEEEEeCCCe-EEEEE
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFS----------FASAWHPNGVTFATGNQDKT-CRIWD 375 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v----------~~~~~sp~g~~l~t~s~dg~-v~iwd 375 (475)
.+.....+..++++..++.|..+|+++|+.+.......... ..-....++ .++.++.++. +.+ |
T Consensus 115 ---~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d 189 (238)
T PF13360_consen 115 ---SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D 189 (238)
T ss_dssp ----SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred ---ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence 11222237888888889999999999999988887644221 122222244 6666666774 565 9
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
+.+ ++.+-... ...+..+ ..+.+..|++++.++.|..||+++|+.+-+
T Consensus 190 ~~t-g~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 190 LAT-GEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTT-TEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCC-CCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 987 55342222 2233331 446777888888999999999999987643
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=88.89 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=143.8
Q ss_pred eEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCe
Q 011924 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~ 268 (475)
.|+-+.. ..+++++++.||.++.|.-.........+.+..|.+.+.+++. +.+|- ++.+.+. |..++++|++...
T Consensus 11 ~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~-L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 11 VITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGW-LFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred eeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccce-eEeeccCcccceeEEEeeccc
Confidence 4554444 7889999999999999987652333234556778888888888 88886 4778666 9999999998876
Q ss_pred eeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-C-cEEEE-EeCCCcEEEEECCCCc-eEE
Q 011924 269 LSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-G-KLLII-VGDNPDGLLVDSMTGK-TIA 341 (475)
Q Consensus 269 ~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g-~~l~~-~~~dg~i~iwd~~~~~-~~~ 341 (475)
.+.-+. .|+.+. ...+|. . .++++ .-.++.+.++|-.... +..
T Consensus 88 minmiKL~~lPg~a~------------------------------wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAE------------------------------WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred hhhhcccccCCCceE------------------------------EecCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence 665444 344443 122221 1 13333 3467899999977443 333
Q ss_pred Ee-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceE-------------EEEecCCCceEEEEEccCCCEEE
Q 011924 342 SL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESV-------------AVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 342 ~l-~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~-------------~~~~~~~~~v~~l~~spdg~~la 406 (475)
-+ .-|..+|.++.+.|.+..+++....|-|.-|.....- .+. ..+.-......++.|+|+|..++
T Consensus 138 ~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence 33 4599999999999999999999999999999886211 111 11111234567999999999999
Q ss_pred EEcCCCeEEEEECCCCeeEE
Q 011924 407 TAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~ 426 (475)
+-+.|..|++++.++|+.++
T Consensus 218 tl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccCcccEEEEEEeccchhhh
Confidence 99999999999999986543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.4e-05 Score=73.88 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=77.5
Q ss_pred eEEECC-CCcEEEEE----eCCCc----EEEEECCCCce----EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 310 HSSQSP-DGKLLIIV----GDNPD----GLLVDSMTGKT----IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 310 ~~~~sp-~g~~l~~~----~~dg~----i~iwd~~~~~~----~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
++.||- +...+.+. +.+|. ..+|+....+. +.++ .....+.+++++|+...++.|+.||.|.+||.
T Consensus 210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 566665 44445443 22333 24566654432 1222 36778999999999999999999999999998
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
.. + +..+....-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 289 ~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 54 2 2222223346779999999999999999999999998643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=78.78 Aligned_cols=247 Identities=13% Similarity=0.017 Sum_probs=142.9
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...+|+. .++.++-++..+++..-.....+. ........++.++.++.+|.|+.+|..+.+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------------~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE------------------VLSPPLVANGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce------------------eecCCEEECCEEEEECCCCeEEEEEcCCCc
Confidence 3445553 457788888777765332221110 111122255677778889999999998776
Q ss_pred ceEEEeeecCC---CCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecccc-----------EEecc--C
Q 011924 221 VSFCSRTTYDD---NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP-----------VNVSS--S 284 (475)
Q Consensus 221 ~~~~~~~~~~~---~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----------v~~s~--~ 284 (475)
........... ... ....+ . ++ .++.+..++.+..+|+.+++.+.......+ +.-+| .
T Consensus 167 ~~W~~~~~~~~~~~~~~-~sp~~--~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~ 240 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGS-ASPVI--A-DG--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD 240 (377)
T ss_pred eeeEEccCCCceeecCC-CCCEE--E-CC--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence 55432221110 000 11111 1 23 366777889999999998877654331110 00000 1
Q ss_pred CceE------EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC-eEEEEEec
Q 011924 285 YCII------LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF-SFASAWHP 357 (475)
Q Consensus 285 ~~~l------~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~-v~~~~~sp 357 (475)
+..+ +.+..+|..+++.......-........+..+++++.+|.++.+|..+|+.+......... ..+...
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-- 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-- 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--
Confidence 1122 1467788888876654331111111225677888889999999999999887665322221 122222
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCce-EEEEEccCCCEEEEEcCCCeEEEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI-RSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v-~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+..+++++.+|.|.++|..+ ++.+..++.+...+ .+.++. + ..|+.++.||.|..|
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 467899999999999999977 77777777555332 223333 3 358888889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-05 Score=69.23 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=115.9
Q ss_pred CCCCCeEEEEE----eCCCeEEEEECC-CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC
Q 011924 243 SPSGAVHFTAS----NNDCGVRDFDMG-KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD 316 (475)
Q Consensus 243 s~~g~~~l~s~----s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~ 316 (475)
|++|++++++- +..|.|-|||.. +.+.+..+. +.-... .+.+.|+
T Consensus 59 s~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-----------------------------el~l~pD 109 (305)
T PF07433_consen 59 SPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-----------------------------ELLLMPD 109 (305)
T ss_pred cCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-----------------------------hEEEcCC
Confidence 99999855542 345789999998 667777776 222222 5567788
Q ss_pred CcEEEEEe------------------CCCcEEEEECCCCceEEE--e--ecCCCCeEEEEEecCCCEEEEEeCCC-----
Q 011924 317 GKLLIIVG------------------DNPDGLLVDSMTGKTIAS--L--CGHLDFSFASAWHPNGVTFATGNQDK----- 369 (475)
Q Consensus 317 g~~l~~~~------------------~dg~i~iwd~~~~~~~~~--l--~~h~~~v~~~~~sp~g~~l~t~s~dg----- 369 (475)
|+.|+++. -+.++.+.|..+|+.+.. + .-|...++-+++.++|..++..-..|
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA 189 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence 86666652 235567778888988776 4 23778899999999987665553333
Q ss_pred --eEEEEECCCCCceEEEEec-------CCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 370 --TCRIWDLRNLSESVAVLKG-------NLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 370 --~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
.|-+++.. ..+..+.. -.+.+-+|+++++|.++++.+. .+.+.+||..++..+.... -..+.+++
T Consensus 190 ~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva 264 (305)
T PF07433_consen 190 PPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVA 264 (305)
T ss_pred CCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeee
Confidence 24444432 22333322 2357889999999998877765 5789999999997765543 24567777
Q ss_pred EcCCCCeEEEE
Q 011924 440 FSPDTESLFIG 450 (475)
Q Consensus 440 fspdg~~l~~~ 450 (475)
-.+++ ++++.
T Consensus 265 ~~~~~-f~~ss 274 (305)
T PF07433_consen 265 PTDDG-FLVSS 274 (305)
T ss_pred ecCCc-eEEeC
Confidence 77776 55444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-05 Score=70.55 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=128.0
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
+|+|.++|..+.+..............+.. . .+.+.. +++++.++.|..||..+++.+..+..+.++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~---~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~------- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-A---VPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPIS------- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-E---EEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGG-------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-E---EEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccc-------
Confidence 688899998776666544332222222211 2 224454 6666799999999999999988887655444
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe-ecCC---CCeEEEEEecCCCEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CGHL---DFSFASAWHPNGVTFA 363 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l-~~h~---~~v~~~~~sp~g~~l~ 363 (475)
... ...+..+++++.++.++.+|..+|+.+... .... ...........+..++
T Consensus 70 ----------------------~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (238)
T PF13360_consen 70 ----------------------GAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLY 126 (238)
T ss_dssp ----------------------SGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEE
T ss_pred ----------------------cee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEE
Confidence 111 124556666667889999999999998874 3221 1122233333578889
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCc----------eEEEEEccCCCEEEEEcCCCe-EEEEECCCCeeEEEEeccC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGA----------IRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~----------v~~l~~spdg~~la~~~~dg~-i~iwd~~~~~~~~~~~~~~ 432 (475)
.+..++.|..+|+++ ++.+-........ +..-....++ .+..++.++. +.+ |++++..+-. .. .
T Consensus 127 ~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~-~~-~ 201 (238)
T PF13360_consen 127 VGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWS-KP-I 201 (238)
T ss_dssp EEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEE-EC-S
T ss_pred EEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEE-ec-C
Confidence 998899999999987 7776666553321 1122222345 6666666774 555 9999986642 22 3
Q ss_pred CCeEEEEEcCCCCeEEEEEecC
Q 011924 433 GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..+.. ...+++..|++++.++
T Consensus 202 ~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 202 SGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp S-ECE-CEECCCTEEEEEETTT
T ss_pred CCccC-CceeeCCEEEEEeCCC
Confidence 33333 2456778888887553
|
... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-07 Score=91.40 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=132.8
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCc
Q 011924 250 FTASNNDCGVRDFDMGKYQLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPD 328 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~ 328 (475)
++.|+....+..+|+.+.+..+.... ...+. -...+++.+.+|...|+
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~-------------------------------imR~Nnr~lf~G~t~G~ 198 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVT-------------------------------IMRYNNRNLFCGDTRGT 198 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceE-------------------------------EEEecCcEEEeecccce
Confidence 77777888888899998888776652 22344 34457899999999999
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC---------CCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 329 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
|.+-|.++-+.++++..|++.+.++.. .|++|++++. |.-|+|||+|+ -+.+..+.-+.++ .-++|.
T Consensus 199 V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~ 274 (1118)
T KOG1275|consen 199 VFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFH 274 (1118)
T ss_pred EEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhc
Confidence 999999999999999999999976554 7899999874 55699999998 4444444444443 568888
Q ss_pred cCC-CEEEEEcCCCeEEEEECC---CCe-eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEE
Q 011924 400 SDG-RYMATAEPADFVHVYDVK---SGY-EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 400 pdg-~~la~~~~dg~i~iwd~~---~~~-~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll 460 (475)
|.= ..+|+++..|...+.|.. +.. .+..+......+.++.+|++|..|+.|-.++.+.-+-
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 853 578888999999999943 321 1222333344599999999999999998888775444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-06 Score=73.50 Aligned_cols=169 Identities=8% Similarity=-0.069 Sum_probs=113.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN 326 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d 326 (475)
.|+.|+.-|...+|.+.+.+....+- +...|.+.. ..+- ....+..++.|
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--------------------------r~cd--~~~~~~i~snd 137 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--------------------------RYCD--LKFPLNIASND 137 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhh--------------------------hhcc--cccceeeccCC
Confidence 48888889999999988655433222 222222100 1111 11235566778
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE--EecCCCceEEEEEccCCCE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~spdg~~ 404 (475)
.++++.++.-+..-..+....-...+++++|+++++++.+....|-.|.+...+..+.. .......-.+..|+.....
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~ 217 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ 217 (344)
T ss_pred cceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce
Confidence 88888877644322222111123788999999999999999999999999875554333 2223344568899999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEE-----EeccCCCeEEEEEcCCCC
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQ-----EIDFFGEISGISFSPDTE 445 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~l~fspdg~ 445 (475)
+|++..||++.|||++....+.. -..|.|.++.+.|+|.|.
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 99999999999999987543322 234889999999998663
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-07 Score=81.08 Aligned_cols=204 Identities=10% Similarity=0.109 Sum_probs=127.6
Q ss_pred eEEEEEE----cCcEEEEEecCceEEEEeCCCCCce------------------------------------E----EEe
Q 011924 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVS------------------------------------F----CSR 226 (475)
Q Consensus 191 ~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~------------------------------------~----~~~ 226 (475)
.|..+.| .-..++..+.+.+|++|.+...... . |..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 5777777 2234555568999999988643100 0 001
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
....|.-.++++.+ +.+... ++++ .|-.|.+|+++.......+-...|-+ -.....
T Consensus 167 yaNaH~yhiNSiS~--NsD~et-~lSa-DdLrINLWnl~i~D~sFnIVDiKP~n--------------------meeLte 222 (460)
T COG5170 167 YANAHPYHINSISF--NSDKET-LLSA-DDLRINLWNLEIIDGSFNIVDIKPHN--------------------MEELTE 222 (460)
T ss_pred ccccceeEeeeeee--cCchhe-eeec-cceeeeeccccccCCceEEEeccCcc--------------------HHHHHH
Confidence 11345556777777 666554 5554 78889999876422111111111100 000001
Q ss_pred eeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceE------EE----------eecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 307 CLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTI------AS----------LCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 307 ~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~------~~----------l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
.|++..|+| ....+.-.+..|.|++-|++..... .. +.+-...|..+.|+|+|+++++-.. -
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-l 301 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-L 301 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-c
Confidence 223778999 4566777788999999999843211 11 1122356788999999999988755 5
Q ss_pred eEEEEECCCCCceEEEEecCC------------Cce---EEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 370 TCRIWDLRNLSESVAVLKGNL------------GAI---RSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~------------~~v---~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
+|+|||++....|+.++.-|. .+| ..+.||-|.+.+.+|+..+..-||-+
T Consensus 302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 899999998888998886542 233 35788988899999988777777653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=84.68 Aligned_cols=182 Identities=17% Similarity=0.194 Sum_probs=133.1
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.-+.+.| ||-|.+ |++- ....|.+|--+....++.|.|+. |. -+.|
T Consensus 212 Tetyv~w--SP~GTY-L~t~-Hk~GI~lWGG~~f~r~~RF~Hp~-Vq-----------------------------~idf 257 (698)
T KOG2314|consen 212 TETYVRW--SPKGTY-LVTF-HKQGIALWGGESFDRIQRFYHPG-VQ-----------------------------FIDF 257 (698)
T ss_pred eeeeEEe--cCCceE-EEEE-eccceeeecCccHHHHHhccCCC-ce-----------------------------eeec
Confidence 3467888 999986 7666 55669999888888888888774 55 6789
Q ss_pred CCCCcEEEEEeC-----------CCcEEEEECCCCceEEEeecC--CCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCC
Q 011924 314 SPDGKLLIIVGD-----------NPDGLLVDSMTGKTIASLCGH--LDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 314 sp~g~~l~~~~~-----------dg~i~iwd~~~~~~~~~l~~h--~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~ 379 (475)
||+.++|++-+. ...++|||+++|...+.+... ...++ -..||.|++++|.-..+ +|.||+...
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps- 335 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS- 335 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc-
Confidence 999999998542 257899999999988887652 22233 25899999999987664 699999754
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCC-----CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
-.++..-.-.-..|....|+|.+..||.=... ..+.+-.+.++..++....+.-.-..+-|-.+|.+|.+-.
T Consensus 336 f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 22222222234578899999999999865432 3678888888877766555554445678889999998764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-05 Score=76.75 Aligned_cols=67 Identities=24% Similarity=0.433 Sum_probs=57.8
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
|.+++|+...|+.|..||.|.+||...+... +....-.+..++|||+|..+++|+..|.+.+||+.-
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999999999999999998766433 333455678899999999999999999999999864
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-05 Score=71.55 Aligned_cols=197 Identities=19% Similarity=0.174 Sum_probs=132.3
Q ss_pred EEEEEeCCCCCeEEEEEeCCCe-EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC
Q 011924 237 AVEIYGSPSGAVHFTASNNDCG-VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP 315 (475)
Q Consensus 237 ~l~~~~s~~g~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp 315 (475)
.++. +|.....++.+-.-|+ ..+||..+++....+..+..-.|.. +..|||
T Consensus 9 ~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG--------------------------Hg~fs~ 60 (305)
T PF07433_consen 9 GVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG--------------------------HGVFSP 60 (305)
T ss_pred ceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec--------------------------CEEEcC
Confidence 4555 7866555777766664 6789999998887776443333322 668999
Q ss_pred CCcEEEEEe-----CCCcEEEEECC-CCceEEEeecCCCCeEEEEEecCCCEEEEEeC------------------CCeE
Q 011924 316 DGKLLIIVG-----DNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGNQ------------------DKTC 371 (475)
Q Consensus 316 ~g~~l~~~~-----~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~------------------dg~v 371 (475)
+|++|++.- ..|.|-|||.. +-+.+..+..|.-....+.+.|||+.|+.++- +..+
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 999999873 35789999998 66778888888777788999999988888752 2235
Q ss_pred EEEECCCCCceEEEEe----cCCCceEEEEEccCCCEEEEEcCCC-------eEEEEECCCCeeEEEE-----eccCCCe
Q 011924 372 RIWDLRNLSESVAVLK----GNLGAIRSIRYTSDGRYMATAEPAD-------FVHVYDVKSGYEKEQE-----IDFFGEI 435 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~----~~~~~v~~l~~spdg~~la~~~~dg-------~i~iwd~~~~~~~~~~-----~~~~~~i 435 (475)
...|.++ ++.+.... .|..+|+.+++.++|..++..-..| -|-+++.......... ....+.+
T Consensus 141 ~~ld~~s-G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 141 VYLDARS-GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EEEecCC-CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence 5556655 56555532 2667899999999998665543322 3555553322111111 1245789
Q ss_pred EEEEEcCCCCeEEEE--------EecCCcceEEEE
Q 011924 436 SGISFSPDTESLFIG--------VWDRTYGSLLEY 462 (475)
Q Consensus 436 ~~l~fspdg~~l~~~--------~~D~~~~~ll~~ 462 (475)
-+|+++++|..++++ .||...+.++..
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 999999999988866 455555554443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=82.04 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=118.1
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCC---CeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeee
Q 011924 233 AITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQ 309 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~ 309 (475)
..+..-.| +|++..+....-.. ..+.++++.+++........+.-.
T Consensus 193 ~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~----------------------------- 241 (425)
T COG0823 193 SLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG----------------------------- 241 (425)
T ss_pred cceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC-----------------------------
Confidence 34445566 88888754443222 358889998887666665444444
Q ss_pred eEEECCCCcEEEEEe-CCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeC-CCe--EEEEECCCCCceE
Q 011924 310 HSSQSPDGKLLIIVG-DNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKT--CRIWDLRNLSESV 383 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~-~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~--v~iwd~~~~~~~~ 383 (475)
..+|+|+|+.|+.+. .+| .|+++|+.++. +..+..-.+.-..-.|+|+|+.++-.+. .|. |.+++.. +..+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--g~~~ 318 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--GSQV 318 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--CCce
Confidence 668999999988775 344 57778887666 3445544444446789999999887764 444 5555654 3434
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCC-Ce--EEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPA-DF--VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
..+....+.-....|+|||++|+..+.. |. |.+.|+.++.. .+............|.|+|+.|...+
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 4454444444488899999999887743 43 77777776654 23333344455667788877776544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=92.85 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=137.4
Q ss_pred CCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeee
Q 011924 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCL 308 (475)
Q Consensus 232 ~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i 308 (475)
.+.++++.+ +|.|+- ++.++.-| +.+.|+.. +...+-+. .++.|.
T Consensus 24 ~~~~~a~si--~p~grd-i~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~va---------------------------- 71 (1081)
T KOG0309|consen 24 DGGFNAVSI--NPSGRD-IVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVA---------------------------- 71 (1081)
T ss_pred cCcccceee--ccccch-hhhhhhcC-eEEEeccCCCCCceeeeccCcchhc----------------------------
Confidence 455778888 999987 66666555 44556543 44444444 356666
Q ss_pred eeEEECCCC--cEEEEEeCCCcEEEEECCC---CceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCce
Q 011924 309 QHSSQSPDG--KLLIIVGDNPDGLLVDSMT---GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 309 ~~~~~sp~g--~~l~~~~~dg~i~iwd~~~---~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
.+.|+|.. .+-++........+|++.. ...-..+.||...|+.+.|+| ....+++++-|..|..||++.+..+
T Consensus 72 -d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 72 -DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred -ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence 88888743 3445555666778898763 233456779999999999999 5678999999999999999998888
Q ss_pred EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCC-CeEEEEEecCCcc
Q 011924 383 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg-~~l~~~~~D~~~~ 457 (475)
+..+..-..+.+.++|+-....+.+.+....|.+||++.| .++..+.+|...|.++.|..-. ..+.+.+.|+++.
T Consensus 151 ~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 8888776667789999875444445556667999999876 4667777788888888776522 2345556666653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=80.81 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=160.2
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--------------cC
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--------------KD 199 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--------------~~ 199 (475)
++.+--.....+.|.+...|.+-++.+-+....+.+ +++.|+.+.| ..
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~------------------h~s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIEL------------------HQSAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhcccc------------------CccceeEEEeccCCCchhccCccccc
Confidence 444422334456677777777777766555444322 1134444444 12
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCC-eEEEEEeCCCeEEEEECCCCeeeeeee-ccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA-VHFTASNNDCGVRDFDMGKYQLSKHFR-FPW 277 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 277 (475)
-+|+++.-.|.|.+||+...... ..+.++..++..++|++..+.. .+|++-....+|.+|+..+|+.+.... ...
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 36778888999999998765544 4566788889999998777665 456666677899999999999887776 444
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-------CCceEEEeecCCC-
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLD- 348 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-------~~~~~~~l~~h~~- 348 (475)
.+. |+.+.| +.+.+.+.+..|.+.+.+.- .|+..+.-..|.+
T Consensus 157 iLs-----------------------------~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 157 ILS-----------------------------CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred cee-----------------------------eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 555 788888 88888888888888777653 1233332222222
Q ss_pred ------------------------CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-
Q 011924 349 ------------------------FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR- 403 (475)
Q Consensus 349 ------------------------~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~- 403 (475)
+...++|+|.-+.++-......+.|+|++- ..++....-..+.+.-+.+-|+++
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCc
Confidence 112357788555444455567799999976 677777776677777788878764
Q ss_pred -EEEEEcCCCeEEEEECCC
Q 011924 404 -YMATAEPADFVHVYDVKS 421 (475)
Q Consensus 404 -~la~~~~dg~i~iwd~~~ 421 (475)
.|.+.-.||.+.||-.+.
T Consensus 287 d~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEEecCCeEEEEEeec
Confidence 788999999999997654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00013 Score=65.77 Aligned_cols=243 Identities=14% Similarity=0.134 Sum_probs=126.5
Q ss_pred eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 136 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
++.+..+..|....+..|-+=++..+=.+.+-.. -.|..++ .+-.-++| ++.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kc---qVpkD~~----------PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKC---QVPKDPN----------PQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEE---ecCCCCC----------chheEEEECCCCcEEEEEcCCCeEEE
Confidence 3445556666667777766655443322222111 1122222 23556667 9999999999999999
Q ss_pred EeCCCCCceEEEe----eecCCCCceeEEEEEeCCC-C--CeEEEEEeCCCeEEEEECC-----CCeeeeeee----ccc
Q 011924 214 KHLDRPGVSFCSR----TTYDDNAITNAVEIYGSPS-G--AVHFTASNNDCGVRDFDMG-----KYQLSKHFR----FPW 277 (475)
Q Consensus 214 w~~~~~~~~~~~~----~~~~~~~~v~~l~~~~s~~-g--~~~l~s~s~dg~v~iwd~~-----~~~~~~~~~----~~~ 277 (475)
+|+.... .+... ....-...|..+.|..... . ...|++-+..|.++-|-+. ..+....|. ++.
T Consensus 70 fdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 70 FDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred Eecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 9987533 21111 1112234455555531111 1 1235555678888777652 233444444 366
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE-EEEECC-CCce-EEEeecCCCCeEEEE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG-LLVDSM-TGKT-IASLCGHLDFSFASA 354 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i-~iwd~~-~~~~-~~~l~~h~~~v~~~~ 354 (475)
.|+ ++.++|..++|++||....= ..+... .|-. .+.+.+..... .+.
T Consensus 149 Gi~-----------------------------~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-~v~ 198 (282)
T PF15492_consen 149 GIN-----------------------------SAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-QVT 198 (282)
T ss_pred cee-----------------------------EEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE-Ecc
Confidence 777 99999999999988743220 000000 0111 11111111110 010
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
+-+...-..... -.+|.+-+ .+...........|..+..||||..||+...+|.|.+|++.+-.....
T Consensus 199 -~~~~~~~~~~~~---~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 199 -SSEDDITASSKR---RGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred -ccCccccccccc---cceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 111111111111 22333321 111111122456899999999999999999999999999988655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-05 Score=78.51 Aligned_cols=207 Identities=14% Similarity=0.061 Sum_probs=129.1
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCC-CCceeEEEEEeCCCCCeEEEEEeCCC-----eEEEEEC
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDD-NAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDM 264 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~l~~~~s~~g~~~l~s~s~dg-----~v~iwd~ 264 (475)
.|+|++..+..+|.|+.+|.|.+.+-.- .. ..-+..+ .++|..+. .-++..+|++-+.|+ .|++|++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~-~~~fqa~~~siv~~L~---~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QL-IRGFQAYEQSIVQFLY---ILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---ee-eehheecchhhhhHhh---cccCceEEEEEeecCCCCceEEEEecc
Confidence 6788888899999999999998776321 11 1112222 22344443 345544566655554 5899998
Q ss_pred CCC------eee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 265 GKY------QLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 265 ~~~------~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
+.- +++ +.+.+..|.+-+ .+.+++++.+-+.+|+|-.+|.|..+.-.
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~------------------------p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPS------------------------PASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCC------------------------cceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 652 223 222222221111 11288999999999999999999988532
Q ss_pred ----CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 336 ----TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 336 ----~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
.|....-...-..+|+.+++..++..++-+..-..|.+|.+.+.......+..+...+.|..|++....+++|+..
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence 1222222223457899999998887744444456799999975332355577788889999998865545555544
Q ss_pred CeEEEEECCCCeeEEEEe
Q 011924 412 DFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~ 429 (475)
.|.+|+........++.
T Consensus 236 -~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 236 -FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred -eEEEEcCCCcceeeeec
Confidence 59999976544433443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-07 Score=57.79 Aligned_cols=38 Identities=26% Similarity=0.614 Sum_probs=36.3
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
+++.++.+|.+.|++++|+|++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.3e-07 Score=78.20 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=58.9
Q ss_pred eEEECC-CCcEEEEEeCCCcEEEEECCCCc-eEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC
Q 011924 310 HSSQSP-DGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 310 ~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~ 377 (475)
+++-+| +..++++|+.+|.+-+||.+... ++..++.|+..++.+-||| ++..|.+++.||.+--||..
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 888888 56677788899999999999764 3455678999999999999 88899999999999999985
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.7e-05 Score=73.52 Aligned_cols=261 Identities=16% Similarity=0.099 Sum_probs=145.8
Q ss_pred CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc
Q 011924 143 HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 143 ~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
..||+. .++.++-++..+++..-..+..+.+ ..+-.+.+..++.+..+|.|..+|..+.+.
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 455554 3467777887777653332222110 111122456677788899999999988776
Q ss_pred eEEEeeecCCC--CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccc
Q 011924 222 SFCSRTTYDDN--AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTE 299 (475)
Q Consensus 222 ~~~~~~~~~~~--~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~ 299 (475)
........... .......+ . ++ . ++.++.++.+..+|..+++.+..+....+....... ++.
T Consensus 183 ~W~~~~~~~~~~~~~~~sP~v--~-~~-~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~------~~~----- 246 (394)
T PRK11138 183 KWTVNLDVPSLTLRGESAPAT--A-FG-G-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEID------RLV----- 246 (394)
T ss_pred eeeecCCCCcccccCCCCCEE--E-CC-E-EEEEcCCCEEEEEEccCChhhheeccccCCCccchh------ccc-----
Confidence 55433211000 00011111 1 23 3 555668899999999988876554321110000000 000
Q ss_pred eEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 300 KVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 300 ~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.+..+| .+..+++++.++.+..+|+.+|+.+....- .....+. ..+..++.++.++.+..+|..
T Consensus 247 ----------~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 247 ----------DVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred ----------ccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECC
Confidence 111223 345677777889999999999987765431 1111122 246678888889999999997
Q ss_pred CCCceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe-EEEEEcCCCCeEEEEEecCC
Q 011924 378 NLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 378 ~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~fspdg~~l~~~~~D~~ 455 (475)
+ ++.+-.... ......+... .+..|+.++.+|.|+++|..+|+.+.+.......+ ....+ .+..|++++.||.
T Consensus 313 t-G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~ 387 (394)
T PRK11138 313 G-GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT 387 (394)
T ss_pred C-CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce
Confidence 6 443222111 1111222222 24577888999999999999998877665433322 22233 2458889998875
Q ss_pred c
Q 011924 456 Y 456 (475)
Q Consensus 456 ~ 456 (475)
+
T Consensus 388 l 388 (394)
T PRK11138 388 V 388 (394)
T ss_pred E
Confidence 4
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-05 Score=80.40 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=112.4
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEee---eeeeEE----
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLL---CLQHSS---- 312 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~---~i~~~~---- 312 (475)
+|+|+.+....-..+.+.+.|.++.+....+. .+..+.+++++..+... .+|.+.+..+..+. .-..+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvT-syNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFST-CYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEe-ccCcccCcceeeeccccCceEEEEchH
Confidence 55676544455556778888988877776665 34456677777666432 22333222221111 001223
Q ss_pred ----ECCCCcEEEEEeCCCcEEEEECCC----C-ceEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCc-
Q 011924 313 ----QSPDGKLLIIVGDNPDGLLVDSMT----G-KTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE- 381 (475)
Q Consensus 313 ----~sp~g~~l~~~~~dg~i~iwd~~~----~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~- 381 (475)
+.++|++..++ ++.|.++|.++ + +.+..+. -......++++|||+++++++. +.+|.|.|+.+...
T Consensus 280 ~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 280 RIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 34567766653 56799999988 3 4444444 4556788999999999888776 88999999976332
Q ss_pred ----------eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 382 ----------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 382 ----------~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+....-..++ ...+|.++|+...+.--|..|..||+.+
T Consensus 357 ~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23333333344 4788999998888888899999999876
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-08 Score=96.20 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=133.6
Q ss_pred eEEEEEE----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE----eCCCeEEEE
Q 011924 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS----NNDCGVRDF 262 (475)
Q Consensus 191 ~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~----s~dg~v~iw 262 (475)
.+.|+++ +..++++|..+|.|.+-.+..+... ...++..+....++++| ++-...+|++| -+|..+.||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceeccccccccccccc--ccccHHHHHhhhhhhcccCCccce
Confidence 3556666 4467889999999999888765433 23566778889999999 66544446666 356679999
Q ss_pred ECCCC--eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ce
Q 011924 263 DMGKY--QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KT 339 (475)
Q Consensus 263 d~~~~--~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~ 339 (475)
|+.++ .+.... .|+. + ......+++|-.+.+++.+|.....+.++|++.. ..
T Consensus 135 di~s~ltvPke~~------~fs~-~------------------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~ 189 (783)
T KOG1008|consen 135 DINSLLTVPKESP------LFSS-S------------------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS 189 (783)
T ss_pred ecccccCCCcccc------cccc-c------------------cccCccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence 99775 221111 1111 0 0111117788889999999999999999999832 22
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEE-CCCCCceEEEEecCCC----ceEEEEEccCCC-EEEEEcC-C
Q 011924 340 IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWD-LRNLSESVAVLKGNLG----AIRSIRYTSDGR-YMATAEP-A 411 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd-~~~~~~~~~~~~~~~~----~v~~l~~spdg~-~la~~~~-d 411 (475)
...+ .+..+..+...| .++++++-+ ||.|.+|| .++...++..+..... .+..++|+|-.. .|++... .
T Consensus 190 ~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS 266 (783)
T KOG1008|consen 190 VSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS 266 (783)
T ss_pred hhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence 2222 234566688889 888888876 89999999 6665555555544333 488999999442 4455444 4
Q ss_pred CeEEEEECC
Q 011924 412 DFVHVYDVK 420 (475)
Q Consensus 412 g~i~iwd~~ 420 (475)
++|+.+|+.
T Consensus 267 ~tIrlydi~ 275 (783)
T KOG1008|consen 267 ITIRLYDIC 275 (783)
T ss_pred ceEEEeccc
Confidence 789999975
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.5e-06 Score=82.91 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=121.3
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.+++.++ .++ +|+-|+..|.|++++.... ....+.+. +-
T Consensus 41 ~is~~av----~~~-~~~~GtH~g~v~~~~~~~~-~~~~~~~s-----------------------------------~~ 79 (846)
T KOG2066|consen 41 AISCCAV----HDK-FFALGTHRGAVYLTTCQGN-PKTNFDHS-----------------------------------SS 79 (846)
T ss_pred HHHHHHh----hcc-eeeeccccceEEEEecCCc-cccccccc-----------------------------------cc
Confidence 3455555 233 5999999999999987432 22222111 11
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEECCCCCc-eEEEEe
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-----GVTFATGNQDKTCRIWDLRNLSE-SVAVLK 387 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~-----g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~ 387 (475)
..+|.++++|+.||++.|-.+-+++...++. ...++.+++++|+ .+.+++|+..| +.++.-+-.+. ....+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 4589999999999999999998888877776 4568999999996 67899999988 77776432222 122466
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC------eEEEEEcCCCCeEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE------ISGISFSPDTESLFIG 450 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~------i~~l~fspdg~~l~~~ 450 (475)
...|+|.++.|. |.++|-++.+| |+|||+.++..+..+...... ...+.|.++. .|++|
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG 222 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG 222 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe
Confidence 677899999996 78999999888 999999988776655543322 3467787764 44444
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.4e-05 Score=76.50 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=160.1
Q ss_pred eeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC--------C-CCeEEEEEeCCCeE
Q 011924 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP--------S-GAVHFTASNNDCGV 259 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~--------~-g~~~l~s~s~dg~v 259 (475)
+.-.++.| .+.+|+.|+ ...|.+-|...-+.. +....|.+.|+.|.|..-| . ...+++++...|.|
T Consensus 16 sN~~A~Dw~~~GLiAygs-hslV~VVDs~s~q~i---qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGS-HSLVSVVDSRSLQLI---QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccccCccceEEEec-CceEEEEehhhhhhh---hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34556777 566666665 456777776654433 5667788999999994211 1 33457777778999
Q ss_pred EEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CC-cEEEEEeCCCcEEEEEC
Q 011924 260 RDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DG-KLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g-~~l~~~~~dg~i~iwd~ 334 (475)
.+||...+..+..+. +..++. .++|-| +. ..|++-.....+.+|+.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~q-----------------------------dl~W~~~rd~Srd~LlaIh~ss~lvLwnt 142 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQ-----------------------------DLCWVPARDDSRDVLLAIHGSSTLVLWNT 142 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchh-----------------------------heeeeeccCcchheeEEecCCcEEEEEEc
Confidence 999998888777776 455666 666654 44 45666667788999999
Q ss_pred CCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCC------ceEEEEecCCC----------------
Q 011924 335 MTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLS------ESVAVLKGNLG---------------- 391 (475)
Q Consensus 335 ~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~------~~~~~~~~~~~---------------- 391 (475)
.+|..............|+.+.| +.+.+..-+..|.|-+-+.-... +....-..|..
T Consensus 143 dtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 143 DTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred cCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 99999888776666788899999 77777777777877777653211 12222222211
Q ss_pred ---------ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC--CeEEEEEecCCcc
Q 011924 392 ---------AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT--ESLFIGVWDRTYG 457 (475)
Q Consensus 392 ---------~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg--~~l~~~~~D~~~~ 457 (475)
....++|+|.-+.++.......+.|+|++-..++..+....+.+.-+.|-|++ ..|++.-.||.+.
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 01245788877655555566679999998777777766666666666676665 5688888887653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-05 Score=79.60 Aligned_cols=206 Identities=14% Similarity=0.177 Sum_probs=134.2
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
..|.++.| ..+... ++.+...|.|.+-|.++......-.-...|. +++
T Consensus 69 ~~i~s~~f--l~d~~~-i~v~~~~G~iilvd~et~~~eivg~vd~GI~-----------------------------aas 116 (1265)
T KOG1920|consen 69 DEIVSVQF--LADTNS-ICVITALGDIILVDPETLELEIVGNVDNGIS-----------------------------AAS 116 (1265)
T ss_pred cceEEEEE--ecccce-EEEEecCCcEEEEcccccceeeeeeccCceE-----------------------------EEe
Confidence 45677777 556555 5666688888888887755443333455666 999
Q ss_pred ECCCCcEEEEEeCCCcEEEEEC----CCCceE-------------------EEeecCC---------------------C
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDS----MTGKTI-------------------ASLCGHL---------------------D 348 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~----~~~~~~-------------------~~l~~h~---------------------~ 348 (475)
||||+.+++..+..+++.+-.- -..+++ ..+.|.. +
T Consensus 117 wS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 117 WSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred ecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence 9999999999988777766432 111111 1222111 1
Q ss_pred CeEEEEEecCCCEEEEEe-----CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECC
Q 011924 349 FSFASAWHPNGVTFATGN-----QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVK 420 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s-----~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~ 420 (475)
.=.++.|--||.++|+.. ..+.|+|||-. +..-.+-....+--.+++|-|.|..+|+-. .++.|.+|. +
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-r 273 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-R 273 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-c
Confidence 123588999999999843 23789999975 222222222223335899999999888753 456799998 5
Q ss_pred CCeeEEEEec----cCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecceeeecc
Q 011924 421 SGYEKEQEID----FFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYLDS 473 (475)
Q Consensus 421 ~~~~~~~~~~----~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~~l~~ 473 (475)
+|-....+.- -..++..++|+.++..|++-..+..-..+.-|..+....||.+
T Consensus 274 NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 274 NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 6644333221 2245899999999999998776666655666666777788875
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00053 Score=62.66 Aligned_cols=191 Identities=9% Similarity=0.117 Sum_probs=112.4
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc--ccEEeccCCceEEEEEEeecccceEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
+...+-...++.|+| .|+.+.++++....+.|..++. .++.++.+... ...-
T Consensus 15 ~~l~g~~~e~SGLTy--~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E----------------------- 68 (248)
T PF06977_consen 15 KPLPGILDELSGLTY--NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE----------------------- 68 (248)
T ss_dssp EE-TT--S-EEEEEE--ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-----------------------
T ss_pred eECCCccCCccccEE--cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-----------------------
Confidence 344455556899999 9988777888888889988887 47888877633 3455
Q ss_pred EeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc------eEEEee-----cCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 011924 304 CLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK------TIASLC-----GHLDFSFASAWHPNGVTFATGNQDKTCR 372 (475)
Q Consensus 304 ~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~------~~~~l~-----~h~~~v~~~~~sp~g~~l~t~s~dg~v~ 372 (475)
.+++..++.++++.-.++.+.++++.... ....+. .+...+-.++|.|.++.|+.+-.....+
T Consensus 69 ------gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~ 142 (248)
T PF06977_consen 69 ------GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKR 142 (248)
T ss_dssp ------EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEE
T ss_pred ------eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChh
Confidence 78888888777766668899999884221 112222 2344578999999877777777766677
Q ss_pred EEECCC--CCceEEEEe--------cCCCceEEEEEccC-CCEEEEEcCCCeEEEEECCCCeeEEEEeccC---------
Q 011924 373 IWDLRN--LSESVAVLK--------GNLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKSGYEKEQEIDFF--------- 432 (475)
Q Consensus 373 iwd~~~--~~~~~~~~~--------~~~~~v~~l~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--------- 432 (475)
||.+.. ....+.... .....+.+++++|. |.+++.......|.++| .+|..+....-..
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 143 LYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS--
T ss_pred hEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCccccc
Confidence 776643 111111111 12345788999995 45666677788999999 6677655544222
Q ss_pred CCeEEEEEcCCCCeEEE
Q 011924 433 GEISGISFSPDTESLFI 449 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~ 449 (475)
...-+|+|.++|+..++
T Consensus 222 ~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -SEEEEEE-TT--EEEE
T ss_pred CCccEEEECCCCCEEEE
Confidence 35789999999965544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00014 Score=77.21 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=131.2
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|.++.+ +.+-++.+...|.|.+-|..+.... ....-...|.+.+| ||++.. ++..+..+++.+-.- ..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aasw--S~Dee~-l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASW--SPDEEL-LALITGRQTLLFMTK-DF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEee--cCCCcE-EEEEeCCcEEEEEec-cc
Confidence 47889988 8888888889999999876654433 22223456888999 999997 666667777665432 22
Q ss_pred eeeeeee-------ccccEE---------eccCCceEEEE-EEeecccceEEEEeeeeeeEEECCCCcEEEEEe----CC
Q 011924 268 QLSKHFR-------FPWPVN---------VSSSYCIILLC-RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----DN 326 (475)
Q Consensus 268 ~~~~~~~-------~~~~v~---------~s~~~~~l~~~-~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----~d 326 (475)
.++...+ ....++ |.......+.- .+-....-..+.....-..++|.-||.++|+.. .+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 2111110 011111 22111111000 000000000000000112689999999999842 23
Q ss_pred -CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCC--CceEEEEecCCCceEEEEEcc
Q 011924 327 -PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNL--SESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 327 -g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~sp 400 (475)
..|++||.. |.+-..-..-.+.-.+++|-|.|.++|+-. .|+.|.++.-... +.-...+......|..++|+.
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 789999976 654333333344456799999999999864 3557888875321 111222233344589999999
Q ss_pred CCCEEEE---EcCCCeEEEEECCCC
Q 011924 401 DGRYMAT---AEPADFVHVYDVKSG 422 (475)
Q Consensus 401 dg~~la~---~~~dg~i~iwd~~~~ 422 (475)
++..||+ ......|++|-+.+-
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCe
Confidence 9999998 445556999998764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-06 Score=77.21 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=111.5
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-----eeeeeeeccc
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-----QLSKHFRFPW 277 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~ 277 (475)
++.|.+-++-+-++.++-.. .+ ..++.|-++.| ...++ ++..|...|.|..+|++.+ .+...+-|+.
T Consensus 228 fs~G~sqqv~L~nvetg~~q----sf-~sksDVfAlQf--~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ----SF-QSKSDVFALQF--AGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS 299 (425)
T ss_pred ecccccceeEEEEeeccccc----cc-ccchhHHHHHh--cccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCc
Confidence 44445556767777654322 11 25567888888 66565 5888999999999999763 4556666888
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCce---EEEeecCCCCeEEE
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT---IASLCGHLDFSFAS 353 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~---~~~l~~h~~~v~~~ 353 (475)
.|+ ++..-. ++..|++.+-+|+|.+||++.-++ +++++||.....-+
T Consensus 300 svt-----------------------------slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 300 SVT-----------------------------SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred chh-----------------------------hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 888 777666 788899999999999999997666 88999987544333
Q ss_pred --EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC
Q 011924 354 --AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390 (475)
Q Consensus 354 --~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~ 390 (475)
-.+|....++++++|-..|||.++. +..+.+++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 3456677888899999999999987 77777776543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0006 Score=66.71 Aligned_cols=251 Identities=17% Similarity=0.122 Sum_probs=138.3
Q ss_pred EEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC----------------CceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 194 TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN----------------AITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~----------------~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
.++.+|+.++... ++.|.++++...... ..+..+.. +.-.++.| ||+|+.++...-++.
T Consensus 49 ~~sP~g~~~~~v~-~~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~~~~d~~ 123 (353)
T PF00930_consen 49 KWSPDGKYIAFVR-DNNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAFLRFDER 123 (353)
T ss_dssp EE-SSSTEEEEEE-TTEEEEESSTTSEEE--ESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEEEE-T
T ss_pred eeecCCCeeEEEe-cCceEEEECCCCCeE--EeccccceeEEcCccceeccccccccccceEE--CCCCCEEEEEEECCc
Confidence 4444888888774 678999887655222 12222211 12245666 999999777777777
Q ss_pred eEEEEECCC----Ce---eeeeeeccccEEeccCCceEEEEEEeecccceEEEE--e-------eeeeeEEECCCCcEEE
Q 011924 258 GVRDFDMGK----YQ---LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIIC--L-------LCLQHSSQSPDGKLLI 321 (475)
Q Consensus 258 ~v~iwd~~~----~~---~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~--~-------~~i~~~~~sp~g~~l~ 321 (475)
.|+.+.+.. .. ....++.+. .........+.++++.+++.... . .-+..+.|.++++.|+
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPK----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--B----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCC----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 777665422 11 222222211 01111345677888888775322 1 1467899999998444
Q ss_pred EE--eCC---CcEEEEECCCCceEEEeec-CCCCe---EEEEEe-cCCC-EEEEEeCCCeEEEEECCCCCceEEEEecCC
Q 011924 322 IV--GDN---PDGLLVDSMTGKTIASLCG-HLDFS---FASAWH-PNGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNL 390 (475)
Q Consensus 322 ~~--~~d---g~i~iwd~~~~~~~~~l~~-h~~~v---~~~~~s-p~g~-~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~ 390 (475)
+. .++ ..+.++|..++.....+.. ...+| ....|. +++. ++.....+|--+||-+...+.....+....
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 43 222 3466788887765433332 22222 355555 6554 444555677655555544355566777666
Q ss_pred CceEE-EEEccCCCEEE-EEcCC----CeEEEEECC-CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 391 GAIRS-IRYTSDGRYMA-TAEPA----DFVHVYDVK-SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 391 ~~v~~-l~~spdg~~la-~~~~d----g~i~iwd~~-~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
-.|.. +.++++++.|+ +|..+ ..|...++. .+ .+..+....+.-..+.|||+|++++......
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-EPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-EEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-CeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 67755 77888877554 44442 256666767 44 4445544444446999999999999876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00044 Score=70.16 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCeEEEEECCC----CCceEEEEecCCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCee--------
Q 011924 358 NGVTFATGNQDKTCRIWDLRN----LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYE-------- 424 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~----~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~-------- 424 (475)
+|++... .+++|.+.|.++ ....+..+... .....++++|||+++++++. +++|.|+|+.+...
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4444443 246788999875 23445555433 35679999999998887665 78999999987542
Q ss_pred ----EEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 425 ----KEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 425 ----~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
..++. ..-.....+|+++|....+---|..+
T Consensus 364 ~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 364 RDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred cceEEEeec-cCCCcceEEECCCCCEEEeEeeccee
Confidence 22222 23345678899998755555445433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00042 Score=68.38 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=133.2
Q ss_pred eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC
Q 011924 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP 315 (475)
Q Consensus 236 ~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp 315 (475)
..+++ ++.+...++....+..|.+.|..+.+............ .++++|
T Consensus 77 ~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-----------------------------~~~~~~ 125 (381)
T COG3391 77 AGVAV--NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-----------------------------GLAVDP 125 (381)
T ss_pred cceee--CCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-----------------------------eEEECC
Confidence 45666 88888767777778999999987777766665443444 789999
Q ss_pred CCcEEEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEE-----EE
Q 011924 316 DGKLLIIVGD---NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVA-----VL 386 (475)
Q Consensus 316 ~g~~l~~~~~---dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~-----~~ 386 (475)
+++.+.++.. ++.+.+.|..+++.+.....-..+ ..++++|+|+.++... .+++|.+.|... ....+ ..
T Consensus 126 ~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~ 203 (381)
T COG3391 126 DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLV 203 (381)
T ss_pred CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceecccccccc
Confidence 9988877755 688999999999888875543334 8899999999777665 688999999754 33222 11
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEeccCC-CeEEEEEcCCCCeEEEEEe
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIGVW 452 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~i~~l~fspdg~~l~~~~~ 452 (475)
.. ......++++|+|.++...... +.+.+.|..++........... ....+.++|+|.++.+...
T Consensus 204 ~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 204 GV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred cc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 11 1234588999999977666544 5899999998876665332222 5778999999999988733
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0012 Score=65.63 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=116.4
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
....+..++.++.+|.+..+|..+.+......... .......+ . ++ . ++.++.++.|..+|.++++.+..+.
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v--~-~~-~-v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV--S-DG-L-VLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE--E-CC-E-EEEECCCCEEEEEEccCCCEeeeec
Confidence 34467778888899999999998777655333211 11111122 1 33 3 5566788999999999999887776
Q ss_pred ccccEE-eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC-----
Q 011924 275 FPWPVN-VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD----- 348 (475)
Q Consensus 275 ~~~~v~-~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~----- 348 (475)
...+.. ..... ...+ .+..+++++.++.+..+|..+|+.+........
T Consensus 188 ~~~~~~~~~~~~------------------------sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 188 LDVPSLTLRGES------------------------APAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred CCCCcccccCCC------------------------CCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence 432211 00000 1111 123566677888999999999987665431110
Q ss_pred --CeEEEEEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 349 --FSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 349 --~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
....+.-+| .+..++.++.++.+..+|..+ ++.+-... .+....+.. .+..|+.++.+|.|..+|.++|+.
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 011122233 345677777899999999977 44332221 111222222 456777888899999999999876
Q ss_pred EEE
Q 011924 425 KEQ 427 (475)
Q Consensus 425 ~~~ 427 (475)
+-.
T Consensus 317 ~W~ 319 (394)
T PRK11138 317 LWS 319 (394)
T ss_pred EEc
Confidence 543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=76.39 Aligned_cols=194 Identities=16% Similarity=0.077 Sum_probs=133.0
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
|...|+.+.. + -..++++++.||.++.|.-.. -+.+.++. |...+.
T Consensus 8 hrd~i~hv~~--t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~-------------------------- 57 (558)
T KOG0882|consen 8 HRDVITHVFP--T--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVIL-------------------------- 57 (558)
T ss_pred ccceeeeEee--e--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHH--------------------------
Confidence 5566666644 2 233699999999999997543 23344444 556666
Q ss_pred eeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEEeecCCCCeEEEEEec-CC---CEEEE-EeCCCeEEEEECCCCC
Q 011924 307 CLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NG---VTFAT-GNQDKTCRIWDLRNLS 380 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g---~~l~t-~s~dg~v~iwd~~~~~ 380 (475)
+++.+-+|.++.+++. |..++++|+.+-..+..++..- ....+.|.- .| ..+|. .-.++.+.|+|-+...
T Consensus 58 ---sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~ 133 (558)
T KOG0882|consen 58 ---SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF 133 (558)
T ss_pred ---hhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence 8889999999999877 9999999988665544333211 122233322 23 13333 3457899999987655
Q ss_pred ce-EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC------Cee---------EEEEeccCCCeEEEEEcCCC
Q 011924 381 ES-VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS------GYE---------KEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 381 ~~-~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~------~~~---------~~~~~~~~~~i~~l~fspdg 444 (475)
.+ ...-.-|..+|..+.+.|-+..+++....|.|.-|.... +.. +..+....+...++.|+|+|
T Consensus 134 ~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 134 CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence 33 344445889999999999999999988899999999762 100 11112234678999999999
Q ss_pred CeEEEEEecCCcce
Q 011924 445 ESLFIGVWDRTYGS 458 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ 458 (475)
..+..-..|..++.
T Consensus 214 ~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 214 AQISTLNPDRKVRG 227 (558)
T ss_pred CcccccCcccEEEE
Confidence 99998888877653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00092 Score=64.50 Aligned_cols=224 Identities=10% Similarity=0.080 Sum_probs=121.4
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC----CeEEEEEeC----------CCeEEEEECCCC-----ee-
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG----AVHFTASNN----------DCGVRDFDMGKY-----QL- 269 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g----~~~l~s~s~----------dg~v~iwd~~~~-----~~- 269 (475)
.|++.|..+..... .........+.+++...-+++ ..+++.|+. .|.|.++++... ++
T Consensus 3 ~i~l~d~~~~~~~~--~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLD--SFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEE--EEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEE--EEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 46666655444332 222223334555544332321 344665532 288999999773 22
Q ss_pred -eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 270 -SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 -~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
+.....+++|. +++-- ++. |+++ ..+.|.+|++...+.+.....+..
T Consensus 81 ~i~~~~~~g~V~-----------------------------ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~ 128 (321)
T PF03178_consen 81 LIHSTEVKGPVT-----------------------------AICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEESS-EE-----------------------------EEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-B
T ss_pred EEEEEeecCcce-----------------------------Ehhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecc
Confidence 23333567777 55533 455 4444 347899999987772222222323
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCC-----
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS----- 421 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~----- 421 (475)
++..++....+++++.|..-..+.++..+.....+..+.. ....++++.|-++++.++++..+|.|.++....
T Consensus 129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence 2333344445679999988777887755432332333332 334678888887778999999999999998652
Q ss_pred --Ce-eEEEE-e-ccCCCeEEE---EEcCC--CC------eEEEEEecCCcceEEEEEeecc
Q 011924 422 --GY-EKEQE-I-DFFGEISGI---SFSPD--TE------SLFIGVWDRTYGSLLEYGRCRN 467 (475)
Q Consensus 422 --~~-~~~~~-~-~~~~~i~~l---~fspd--g~------~l~~~~~D~~~~~ll~~~~~~~ 467 (475)
+. .+... . .....|+++ ++.|. +. .++.++.+|.++.++.+.....
T Consensus 209 ~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~ 270 (321)
T PF03178_consen 209 RDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIPFLSEEE 270 (321)
T ss_dssp TTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE-E-HHH
T ss_pred ccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEecCCHHH
Confidence 11 22211 1 233557777 55552 22 4888999999998888544433
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0016 Score=61.77 Aligned_cols=217 Identities=18% Similarity=0.186 Sum_probs=130.8
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccc
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPW 277 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~ 277 (475)
++.+--..+.|.-|+....... .+.......+...+ ...+ +|+++ +..+.+++.+++..+..+. ...
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~--d~~g--~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI--DAGG--RLIAC--EHGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee--cCCC--eEEEE--ccccEEEeccCCceeEEeccccCCC
Confidence 4556667788888877644322 11122222222333 4444 25554 2346667776555533222 111
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------CCcEEEEECC-CCceEEEeecCC
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------NPDGLLVDSM-TGKTIASLCGHL 347 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------dg~i~iwd~~-~~~~~~~l~~h~ 347 (475)
+.+ .++ ...+.|+|.+.+.... ...-.||.+. .+..+..+..+-
T Consensus 109 ~~~-r~N-------------------------D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 109 PLN-RPN-------------------------DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred CcC-CCC-------------------------ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 111 111 6678888877665433 1112344444 577777777666
Q ss_pred CCeEEEEEecCCCEEEEEeC-CCeEEEEECCC-C----Cc-eEEEEecCCCceEEEEEccCCCEEEEEcCCC-eEEEEEC
Q 011924 348 DFSFASAWHPNGVTFATGNQ-DKTCRIWDLRN-L----SE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV 419 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~-~----~~-~~~~~~~~~~~v~~l~~spdg~~la~~~~dg-~i~iwd~ 419 (475)
...+.++||||++.|+.+-. .+.|.-|++.. . .+ ....+....+..-.++...+|.+-+++..+| .|.+|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 77788999999988887755 46777777641 1 11 1222233345566788888998776665554 8999997
Q ss_pred CCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEecC
Q 011924 420 KSGYEKEQEIDFFGEISGISF-SPDTESLFIGVWDR 454 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~D~ 454 (475)
. |+++..+......+++++| .|+.+.|++.+...
T Consensus 243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred C-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 7 8888888877678888888 45678888776654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-05 Score=75.40 Aligned_cols=140 Identities=24% Similarity=0.287 Sum_probs=95.5
Q ss_pred eEEECCCCcEEEEEe---CC-CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCe--EEEEECCCCCce
Q 011924 310 HSSQSPDGKLLIIVG---DN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKT--CRIWDLRNLSES 382 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~---~d-g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~--v~iwd~~~~~~~ 382 (475)
..+|+|++..++... .. ..++++++.+++....+. ..+.-...+|+|||+.|+-+ ..||. |.+.|+.. +.
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--~~ 273 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--KN 273 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--Cc
Confidence 568999998876652 23 469999999887655544 33445567899999887755 45665 55566654 33
Q ss_pred EEEEecCCCceEEEEEccCCCEEEEEcCC-C--eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 383 VAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~spdg~~la~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
...+....+.-+.-.|+|||+.|+..+.. | .|.++++..+.. ..+....+.-....|||||++|+..+..
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 44465555555578899999998877653 3 577778776554 3444334434488899999999987743
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=76.09 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=96.1
Q ss_pred ccceeeecccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE------
Q 011924 124 VKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV------ 197 (475)
Q Consensus 124 ~~~~~~h~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------ 197 (475)
++....|-+-++++.-... ...+|+..+...|+...-+++...+ +|..++.
T Consensus 483 P~k~mL~~~d~~mil~~~~------~~~~ly~mDLe~GKVV~eW~~~~~~-----------------~v~~~~p~~K~aq 539 (794)
T PF08553_consen 483 PKKAMLHDQDRNMILLDPN------NPNKLYKMDLERGKVVEEWKVHDDI-----------------PVVDIAPDSKFAQ 539 (794)
T ss_pred cchhhhhccccceEeecCC------CCCceEEEecCCCcEEEEeecCCCc-----------------ceeEecccccccc
Confidence 4445567777777654332 2355666676666666666654321 1333333
Q ss_pred -cCcEEEEEecCceEEEEeCCCCCceEEE--eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 198 -KDKLLVAGGFQGELICKHLDRPGVSFCS--RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 -~~~~lvsg~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
...-.+.|-.+..+..||.+..+..... ......+...+|++- +.+| .+|+||.+|.||+||--..+....++
T Consensus 540 lt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aT--t~~G--~iavgs~~G~IRLyd~~g~~AKT~lp 615 (794)
T PF08553_consen 540 LTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFAT--TEDG--YIAVGSNKGDIRLYDRLGKRAKTALP 615 (794)
T ss_pred cCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEe--cCCc--eEEEEeCCCcEEeecccchhhhhcCC
Confidence 2334566777888999998865522111 111234445677766 7777 49999999999999954333334444
Q ss_pred -ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 275 -FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 275 -~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
...||. ++.++.||+++++.+. ..+.|++.
T Consensus 616 ~lG~pI~-----------------------------~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 616 GLGDPII-----------------------------GIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCCCee-----------------------------EEEecCCCcEEEEeec-ceEEEEEE
Confidence 467888 9999999999987654 46777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00043 Score=71.13 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=114.9
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc-EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP-VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL 320 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l 320 (475)
++++.. ++.|+.+|.|.+.+- ..+.++.|. ++.. +. .+-.-.+..+|
T Consensus 32 ~s~~~~-vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~-----------------------------~L~~~~~~~~L 80 (933)
T KOG2114|consen 32 SSSTGS-VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQ-----------------------------FLYILNKQNFL 80 (933)
T ss_pred cCCCce-EEEeeccccEEEecc-cceeeehheecchhhhh-----------------------------HhhcccCceEE
Confidence 666664 999999998877763 234445554 3333 44 33333333566
Q ss_pred EEEeCCC-----cEEEEECCC------CceE--EEeec-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEEC---CCC
Q 011924 321 IIVGDNP-----DGLLVDSMT------GKTI--ASLCG-----HLDFSFASAWHPNGVTFATGNQDKTCRIWDL---RNL 379 (475)
Q Consensus 321 ~~~~~dg-----~i~iwd~~~------~~~~--~~l~~-----h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~---~~~ 379 (475)
++.+.|. .++||++.. ..++ +++.+ .+.++.+++.|.+-+.+|+|-.+|.|..+.- |..
T Consensus 81 ~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 81 FSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred EEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 6665543 589999862 2233 22333 2456888999999999999999999998853 221
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCCeEEEEE
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
+...........+|+.+++..+++-++.+..-..|.+|.+....+... +..|...+.|-.|++....+++++
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence 222333333457999999999998633333345699999884442333 445667899999998777566654
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0027 Score=62.53 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=124.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCce---------------------------------------E-EEeee
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS---------------------------------------F-CSRTT 228 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~---------------------------------------~-~~~~~ 228 (475)
.|+.+++ ...-|++|...|.|.+|.+..++.. + .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4667777 6678888889999999876432110 0 11222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCL 308 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i 308 (475)
....+.|++++. |.-| +++.|..+|.+.|.|++....+..-.... .. .. ..... .+
T Consensus 83 ~~~~g~vtal~~--S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~-~~-~~------------~~~~~------~v 138 (395)
T PF08596_consen 83 DAKQGPVTALKN--SDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE-SF-LS------------KSSSS------YV 138 (395)
T ss_dssp ---S-SEEEEEE---BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-------------SS----------E
T ss_pred eccCCcEeEEec--CCCc--EEEEEecCCcEEEEECCCCeEEeeccccc-cc-cc------------ccccc------Ce
Confidence 334578999988 7666 58999999999999998877765533111 00 00 00000 01
Q ss_pred eeEEE-----CCCC---cEEEEEeCCCcEEEEECC--C-CceE----EEeecCCCCeEEEE-EecC-C------------
Q 011924 309 QHSSQ-----SPDG---KLLIIVGDNPDGLLVDSM--T-GKTI----ASLCGHLDFSFASA-WHPN-G------------ 359 (475)
Q Consensus 309 ~~~~~-----sp~g---~~l~~~~~dg~i~iwd~~--~-~~~~----~~l~~h~~~v~~~~-~sp~-g------------ 359 (475)
+++.| ..|+ -.+++|...|.+.+|.+. . +... .....+.+++..+. ++.+ |
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 13333 3344 578888999999999764 1 2221 12223556666554 3221 0
Q ss_pred -------CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE-----ccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 360 -------VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY-----TSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 360 -------~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-----spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
+-++.......+||+..-+ .+..+......-....+.+ ...+..|++-..+|.|++|.+..-+.+..
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 1233334456799999876 3433333322223334445 23567888889999999999999887776
Q ss_pred EeccC----CCeEEEEEcCCCCeEEEE
Q 011924 428 EIDFF----GEISGISFSPDTESLFIG 450 (475)
Q Consensus 428 ~~~~~----~~i~~l~fspdg~~l~~~ 450 (475)
..... ..+....|+++|..++..
T Consensus 298 ~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 298 VSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp EE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred ccCCCccccccccccEECCCCCEEEEe
Confidence 66432 345667789999876544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00042 Score=72.83 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeeeeeeecccc--EE-eccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEE
Q 011924 246 GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP--VN-VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLI 321 (475)
Q Consensus 246 g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--v~-~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~ 321 (475)
.+.+|........|+-.|+++|+.+........ |. +.|+. .++. +....+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~--------------------------K~aqlt~e~tf 546 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDS--------------------------KFAQLTNEQTF 546 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccc--------------------------cccccCCCceE
Confidence 343344445667899999999999998884332 33 21111 1111 123445
Q ss_pred EEeCCCcEEEEECCC-CceEEEeec----CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE
Q 011924 322 IVGDNPDGLLVDSMT-GKTIASLCG----HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396 (475)
Q Consensus 322 ~~~~dg~i~iwd~~~-~~~~~~l~~----h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 396 (475)
+|-.+..+..||.|- +..+..-.. ......|++-+.+| +||+|+.+|.||+||- .+.+....+.+-..+|..|
T Consensus 547 lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 547 LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGI 624 (794)
T ss_pred EEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEE
Confidence 566778899999984 322221122 22345566666565 7999999999999995 3345555666767899999
Q ss_pred EEccCCCEEEEEcCCCeEEEEEC
Q 011924 397 RYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+.||++|++.+.. .|.++++
T Consensus 625 Dvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 625 DVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EecCCCcEEEEeecc-eEEEEEE
Confidence 999999999877754 5777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0022 Score=58.03 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=111.6
Q ss_pred eeeecccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---c----
Q 011924 127 TILHFQLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---K---- 198 (475)
Q Consensus 127 ~~~h~~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~---- 198 (475)
.-.+.|.|.+.|+++...+.++ +.+.|.+++.... .++... |....++. -...|..|.| .
T Consensus 40 kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I~----p~~~~~~d-----~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 40 KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVIP----PAMSFPGD-----LSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred CCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEcC----cccccCCc-----cccceeeeEeeccccccc
Confidence 3456789999999999888776 5588999986542 222222 22222221 1235666666 1
Q ss_pred -CcEEEEEecCceEEEEeCCC---CC--ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee
Q 011924 199 -DKLLVAGGFQGELICKHLDR---PG--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272 (475)
Q Consensus 199 -~~~lvsg~~dg~i~vw~~~~---~~--~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (475)
...|++-...|.++-+-+.. .+ ..............|+++.+ +|.-+.+++.|.....-..+..
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy--~p~h~LLlVgG~~~~~~~~s~a-------- 177 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY--HPKHRLLLVGGCEQNQDGMSKA-------- 177 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE--cCCCCEEEEeccCCCCCccccc--------
Confidence 22566666888888777632 12 12223333445667899888 8887765555543331111100
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC------cEEEEECCCCceEEEeecC
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP------DGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg------~i~iwd~~~~~~~~~l~~h 346 (475)
....++ .|-+. .=+|-.+.+. ...++ ...+|.+-+.+........
T Consensus 178 --~~~GLt------------aWRiL--------------~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 178 --SSCGLT------------AWRIL--------------SDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred --cccCce------------EEEEc--------------CCCCcEEEcc-ccCccccccccccceeeccceeeeeccccC
Confidence 000111 00000 0111111111 11111 1123333322222222335
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.+.|+.+..||||..||+...+|.|.+|++-+ -+....+
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W 267 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSW 267 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhccc
Confidence 78899999999999999999999999999965 3333333
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.015 Score=55.88 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=112.6
Q ss_pred cCcEEEE-EecCceEE--EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 198 KDKLLVA-GGFQGELI--CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~~lvs-g~~dg~i~--vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
+|+.|+. +..+|.-. +.|+.+.... +++.+.........+ +|..+.++. ......|+..|+.+.+....+.
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~---QLTdg~g~~~~g~~~--s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEIT---QLTDGPGDNTFGGFL--SPDDRALYY-VKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEE---E---SS-B-TTT-EE---TTSSEEEE-EETTTEEEEEETTT--EEEEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEE---ECccCCCCCccceEE--ecCCCeEEE-EECCCeEEEEECCcCcEEEEEE
Confidence 6755554 44565544 4455543322 444433222223444 788776444 3356788999999877654444
Q ss_pred ccc----cEEe--ccCCceEE----------------------------EEEEeecccceEEEEee---eeeeEEECC-C
Q 011924 275 FPW----PVNV--SSSYCIIL----------------------------LCRLLNFMTEKVIICLL---CLQHSSQSP-D 316 (475)
Q Consensus 275 ~~~----~v~~--s~~~~~l~----------------------------~~~v~d~~~~~~~~~~~---~i~~~~~sp-~ 316 (475)
.+. ..++ ..++..++ .+...|+.+|+...... .+.++.||| +
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 222 1222 23344442 23344666666544333 567999999 5
Q ss_pred CcEEEEEeC---CC-cEEEEECC-CCceEEEeecCCC--CeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCCceEE
Q 011924 317 GKLLIIVGD---NP-DGLLVDSM-TGKTIASLCGHLD--FSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNLSESVA 384 (475)
Q Consensus 317 g~~l~~~~~---dg-~i~iwd~~-~~~~~~~l~~h~~--~v~~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~~~~~~ 384 (475)
..+|+.|-. +. .-+||-++ .|.....+..+.. .+.-=-|.|+|..|.--+. +..|.-+|..+. ....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~-~~~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG-ERRR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---EEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-CceE
Confidence 566666642 11 12455444 3444444443332 2333468999987775432 446777888763 3222
Q ss_pred EEecCCCceEEEEEccCCCEEEEEcCC----------------CeEEEEECCCCeeEEEEeccC---------C--CeEE
Q 011924 385 VLKGNLGAIRSIRYTSDGRYMATAEPA----------------DFVHVYDVKSGYEKEQEIDFF---------G--EISG 437 (475)
Q Consensus 385 ~~~~~~~~v~~l~~spdg~~la~~~~d----------------g~i~iwd~~~~~~~~~~~~~~---------~--~i~~ 437 (475)
... ..+...+.-++||++++-=+.| -.|++++++++.... +..|. . .=..
T Consensus 279 ~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 279 LME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT---
T ss_pred EEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCC
Confidence 222 1234466668899987653333 157778888765432 22222 1 1246
Q ss_pred EEEcCCCCeEEEEEe
Q 011924 438 ISFSPDTESLFIGVW 452 (475)
Q Consensus 438 l~fspdg~~l~~~~~ 452 (475)
+.|||||++|+-.+.
T Consensus 356 p~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSD 370 (386)
T ss_dssp -EE-TTSSEEEEEE-
T ss_pred CccCCCCCEEEEECC
Confidence 899999999987664
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4e-06 Score=85.45 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCceEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~~~~~~~ 387 (475)
|++|+...+.|++|+..|.|+++++.+|.......+|...|+-+.-+-+|..+++.+.-. -..+|++.....+.+.+.
T Consensus 1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc
Confidence 999999999999999999999999999999999999999999998888998888776533 478999987777888877
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec----cCCCeEEEEEcCCCCeEEE--EEecCCc
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLFI--GVWDRTY 456 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~fspdg~~l~~--~~~D~~~ 456 (475)
+. .++.|+..-.+-+.|+......|||++++..+.++.. ....-+...|||+...|+- -.||..+
T Consensus 1186 ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~ 1256 (1516)
T KOG1832|consen 1186 ED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRI 1256 (1516)
T ss_pred cc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeecc
Confidence 54 4788987665556666667799999999877666432 1123366778888776653 1455443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-06 Score=85.50 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=122.6
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee-eee--eccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-KHF--RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~-~~~--~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
.+.|++++...+ +-+++.|..+|.|-+-.++...-. ..+ .+..+.+ +
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct-----------------------------~ 107 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCT-----------------------------S 107 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceeccccccccc-----------------------------c
Confidence 355666633333 346888888999988877543222 222 2556667 9
Q ss_pred EEECC-CCcEEEEEe----CCCcEEEEECCCC--ce--EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC
Q 011924 311 SSQSP-DGKLLIIVG----DNPDGLLVDSMTG--KT--IASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 380 (475)
Q Consensus 311 ~~~sp-~g~~l~~~~----~dg~i~iwd~~~~--~~--~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~ 380 (475)
++|++ |.+.||+|- .+..+.|||+.++ .+ ...+.+ ......+++|-.+.+++.+|...+.+.++|+|.
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-- 185 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-- 185 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--
Confidence 99999 777888773 4677999999876 22 222332 334556889998999999999999999999984
Q ss_pred ceEEEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEE-CCCCeeEEEEeccC-----CCeEEEEEcCCC-CeEEEEEe
Q 011924 381 ESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYD-VKSGYEKEQEIDFF-----GEISGISFSPDT-ESLFIGVW 452 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd-~~~~~~~~~~~~~~-----~~i~~l~fspdg-~~l~~~~~ 452 (475)
.+.....-....+..+..+| .+.++++-. ||.|.+|| ..+-+.+.+...+. ..+..++|+|-. ..|++..-
T Consensus 186 s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 186 SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 22222222334567778888 777887665 89999999 33322222222222 348899999953 34455555
Q ss_pred cCCcc
Q 011924 453 DRTYG 457 (475)
Q Consensus 453 D~~~~ 457 (475)
|..+-
T Consensus 265 dS~tI 269 (783)
T KOG1008|consen 265 DSITI 269 (783)
T ss_pred CcceE
Confidence 54433
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5e-05 Score=71.22 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=94.1
Q ss_pred eEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 310 HSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 310 ~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
.++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.- +.++|+.|-..|.|.|||+|.+..++..+.
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 999999665 7888899999999999999888888877 7899999988 457888888999999999998776665555
Q ss_pred cC--CCceEEEE------EccCCCEEEEEcCCCeEEEEECCCC--eeEE-EEeccCCCeEEEEEcCCCCeEEE
Q 011924 388 GN--LGAIRSIR------YTSDGRYMATAEPADFVHVYDVKSG--YEKE-QEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 388 ~~--~~~v~~l~------~spdg~~la~~~~dg~i~iwd~~~~--~~~~-~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
+. ..+|..++ ..+.|-+|+.+..+ +..|++.-. .... ......|...++...+-.+.+++
T Consensus 277 a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 277 ANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred hhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 42 22444433 23445566655543 566765422 1122 22233566666777664455443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.001 Score=65.06 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=103.6
Q ss_pred CCCCCeEEEEE--------eCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC
Q 011924 243 SPSGAVHFTAS--------NNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS 314 (475)
Q Consensus 243 s~~g~~~l~s~--------s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s 314 (475)
||+++.+|+.. +..+.+.++|+++++..........+. ...||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~-----------------------------~~~~s 51 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQ-----------------------------DAKWS 51 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBS-----------------------------EEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccc-----------------------------cceee
Confidence 57777655532 234567888888876655444444555 78999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEee--c-------C---------CCCeEEEEEecCCCEEEEEeCCC-------
Q 011924 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLC--G-------H---------LDFSFASAWHPNGVTFATGNQDK------- 369 (475)
Q Consensus 315 p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~-------h---------~~~v~~~~~sp~g~~l~t~s~dg------- 369 (475)
|+|+.+|.+. ++.|++++..++... .+. | - -+.-.++-|||||++||....|.
T Consensus 52 P~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 52 PDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 9999999885 578999998777443 332 2 0 11235688999999998765321
Q ss_pred -----------------------------eEEEEECCCCCce-EEEE---ecCCCceEEEEEccCCCEEEEEc--CC---
Q 011924 370 -----------------------------TCRIWDLRNLSES-VAVL---KGNLGAIRSIRYTSDGRYMATAE--PA--- 411 (475)
Q Consensus 370 -----------------------------~v~iwd~~~~~~~-~~~~---~~~~~~v~~l~~spdg~~la~~~--~d--- 411 (475)
.+.|+|+...... +... .....-+..+.|+++++.|+... .+
T Consensus 130 ~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~ 209 (353)
T PF00930_consen 130 LPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR 209 (353)
T ss_dssp EEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE
T ss_pred eeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE
Confidence 1333444331111 1111 12234578899999998444332 22
Q ss_pred CeEEEEECCCCeeEEEEec-cCCC---eEEEEEc-CCCCeEEEE-EecCCcceEEEE
Q 011924 412 DFVHVYDVKSGYEKEQEID-FFGE---ISGISFS-PDTESLFIG-VWDRTYGSLLEY 462 (475)
Q Consensus 412 g~i~iwd~~~~~~~~~~~~-~~~~---i~~l~fs-pdg~~l~~~-~~D~~~~~ll~~ 462 (475)
-.+.++|..++........ ..+. -..+.|. +++..++.. ..|| ...|..+
T Consensus 210 ~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G-~~hly~~ 265 (353)
T PF00930_consen 210 LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG-YRHLYLY 265 (353)
T ss_dssp EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS-SEEEEEE
T ss_pred EEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC-CcEEEEE
Confidence 2577788877654433322 2232 2356665 666555544 3333 3344333
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.018 Score=56.89 Aligned_cols=209 Identities=18% Similarity=0.163 Sum_probs=138.8
Q ss_pred cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe--CCCeEEEEECCCCeeeeeee
Q 011924 198 KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~iwd~~~~~~~~~~~ 274 (475)
.+. ..++...++.|.+.+........ ....+. .-..+++ +++++.+.++-. .++++.+.|-.+.+......
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~--~~~vG~--~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLG--SIPVGL--GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceee--Eeeecc--CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 444 56666667899999966544332 222222 3345667 999988666665 47899999999888887754
Q ss_pred cc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEE-E---eecCCC
Q 011924 275 FP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA-S---LCGHLD 348 (475)
Q Consensus 275 ~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~-~---l~~h~~ 348 (475)
.. .+ . .++++|+|+.+.++. .++.+.+.|........ . ...-..
T Consensus 158 vG~~P-~-----------------------------~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~ 207 (381)
T COG3391 158 VGNTP-T-----------------------------GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT 207 (381)
T ss_pred cCCCc-c-----------------------------eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC
Confidence 32 23 4 789999999777665 78899999976555442 1 111223
Q ss_pred CeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCe
Q 011924 349 FSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGY 423 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~ 423 (475)
....+.++|+|+++...... +++.+.|... +..... ..........+.++|+|+++.++.. .+.+.+.|..+..
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 45678999999988777665 4899999876 443333 2222214567899999999888844 4889999988876
Q ss_pred eEEEEeccC---CCeEEEEEcCC
Q 011924 424 EKEQEIDFF---GEISGISFSPD 443 (475)
Q Consensus 424 ~~~~~~~~~---~~i~~l~fspd 443 (475)
......... +.+..+++.+.
T Consensus 287 v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 287 VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeeeecccccccccceeccceee
Confidence 655444322 34556666554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0098 Score=60.26 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=83.5
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
...+|++..+++|+.|+..|.+++++-..+... .....+..+++..+.+ |++.. ++++|+..|.|.++-+.....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--~~~~~~~~~~~~~~~v--s~~e~-lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--KLKNEGATGITCVRSV--SSVEY-LVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhh--cccccCccceEEEEEe--cchhH-hhhhhcCCceEEeehhhccCC
Confidence 467788889999999999999999997654433 2223334556666677 88876 488888999999998765322
Q ss_pred -----eeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 270 -----SKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 270 -----~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
+.... |+..|+ +++|++++..|.+|...|.|.+..+.+
T Consensus 111 ~~~~~~t~~d~~~~~rVT-----------------------------al~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVT-----------------------------ALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEE-----------------------------EEEecccccEEeecCCCceEEEEEech
Confidence 11111 455666 999999999999999999998877765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.04 Score=56.39 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE------------------eCCCeEEEEECCCCC
Q 011924 319 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG------------------NQDKTCRIWDLRNLS 380 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~------------------s~dg~v~iwd~~~~~ 380 (475)
.+++++.+|.+...|.++|+.+...... ...++.+| ..++.+ ..+|.+.-.|+.+ +
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-G 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC-C
Confidence 5777788999999999999988765421 11123333 222221 1346677777765 4
Q ss_pred ceEEEEecCC--------Cce--EEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe-EE-EEEcCCCCeEE
Q 011924 381 ESVAVLKGNL--------GAI--RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SG-ISFSPDTESLF 448 (475)
Q Consensus 381 ~~~~~~~~~~--------~~v--~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~-l~fspdg~~l~ 448 (475)
+.+=...... .+. ..+. ..+..|++++.+|.|+.+|.++|+.+-.... .+.+ .. +.|..+| .++
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g-~~y 452 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNG-KQY 452 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCC-EEE
Confidence 3322222110 111 1122 2456888889999999999999998877654 3333 22 2344454 666
Q ss_pred EEEecCC
Q 011924 449 IGVWDRT 455 (475)
Q Consensus 449 ~~~~D~~ 455 (475)
++..++.
T Consensus 453 v~~~~g~ 459 (488)
T cd00216 453 VGVMVGG 459 (488)
T ss_pred EEEEecC
Confidence 6666664
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.015 Score=52.14 Aligned_cols=141 Identities=13% Similarity=0.041 Sum_probs=95.4
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecccc
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWP 278 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 278 (475)
..+++.|+..|.+..-|...+....... .+ ..+.+-++. -|+. ++.|...|.+++.+.++|.....|.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg--~RiE~sa~v---vgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LG--VRIECSAIV---VGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hC--ceeeeeeEE---ECCE-EEEEEccCcEEEEEecchhheeeeeehhh
Confidence 4577788888888888877665443221 11 222232221 2554 88888999999999999988887775555
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP- 357 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp- 357 (475)
|.. .....+++.++..++.|++.+..|.++..++...+...+...+-+..|
T Consensus 95 vk~----------------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g 146 (354)
T KOG4649|consen 95 VKV----------------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG 146 (354)
T ss_pred hcc----------------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC
Confidence 541 335678999999999999999999999998888775444444556677
Q ss_pred CCCEEEEEeCCCeEEEEEC
Q 011924 358 NGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~ 376 (475)
++. |+.+...|.|.--..
T Consensus 147 ~~s-ly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 147 DGS-LYAAITAGAVLAVTK 164 (354)
T ss_pred Cce-EEEEeccceEEEEcc
Confidence 444 444445555544443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=71.76 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=73.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
-+.|+|.-.++|.+..+|.+.+..+. -+.+.++.-|...++ +++|.|||++||.|-.||+|++-|+.++.........
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s 103 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS 103 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc
Confidence 78899999999999999999999987 666778876666666 9999999999999999999999999884443332233
Q ss_pred CCCceEEEEEcc
Q 011924 389 NLGAIRSIRYTS 400 (475)
Q Consensus 389 ~~~~v~~l~~sp 400 (475)
....|.++-|+|
T Consensus 104 ~e~~is~~~w~~ 115 (665)
T KOG4640|consen 104 VETDISKGIWDR 115 (665)
T ss_pred cccchheeeccc
Confidence 445777777863
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0035 Score=55.99 Aligned_cols=146 Identities=13% Similarity=-0.007 Sum_probs=100.2
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
.++.+.+++.||..+.+..-|..+|+..........+. +-+.- -|++++.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-----------------------------~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-----------------------------CSAIV-VGDFVVL 68 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceee-----------------------------eeeEE-ECCEEEE
Confidence 45666678899999999999998888776554433333 22211 4778999
Q ss_pred EeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 323 VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
|...|.+++.+..+|.....+..-..--......+++.++..|+.|++....|.++ ..++...+...+.-.+.+..|-.
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~g~ 147 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAPGD 147 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceeccceecCCC
Confidence 99999999999999988777764332222345677999999999999999999987 66777666554444455566622
Q ss_pred CEEEEEcCCCeEEEEEC
Q 011924 403 RYMATAEPADFVHVYDV 419 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~ 419 (475)
..|..+...|.|.--..
T Consensus 148 ~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceEEEEeccceEEEEcc
Confidence 23444444454444443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.055 Score=55.43 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=124.8
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCC--C-CceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEECCCC
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDD--N-AITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKY 267 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~--~-~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd~~~~ 267 (475)
..++.++.+|.|+.+|..+.+........... . .......+ . + .. ++.++ .++.|..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~-~-~~-v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--V-K-KL-VIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--E-C-CE-EEEeccccccccCCCCcEEEEEECCCC
Confidence 78888889999999999887766533322110 0 01112222 1 2 22 33432 3678999999999
Q ss_pred eeeeeeeccc--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC------------------
Q 011924 268 QLSKHFRFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP------------------ 327 (475)
Q Consensus 268 ~~~~~~~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg------------------ 327 (475)
+.+-.+.... +..+...+. ...++....+... ...++.+.+.++++++.++
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~g~~vw------~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~ 256 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGP---DRQMWGPGGGTSW------ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTD 256 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCC---CcceecCCCCCcc------CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCcee
Confidence 9887765321 111000000 0000000000000 0345566667777776554
Q ss_pred cEEEEECCCCceEEEeec--CCCC----eEEEEEe----cCCC---EEEEEeCCCeEEEEECCCCCceEEEEecCCCceE
Q 011924 328 DGLLVDSMTGKTIASLCG--HLDF----SFASAWH----PNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~--h~~~----v~~~~~s----p~g~---~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 394 (475)
.+.-+|+.+|+.+..++. |... .....+. -++. .++.++.+|.+...|.++ ++.+-..... ..
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~ 332 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQ 332 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeEee---cc
Confidence 689999999998877652 2110 0011111 1333 677888899999999987 5654433221 11
Q ss_pred EEEEccCCCEEEEE------------------cCCCeEEEEECCCCeeEEEEeccC--------CCeEEEEEcCCCCeEE
Q 011924 395 SIRYTSDGRYMATA------------------EPADFVHVYDVKSGYEKEQEIDFF--------GEISGISFSPDTESLF 448 (475)
Q Consensus 395 ~l~~spdg~~la~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~l~fspdg~~l~ 448 (475)
.++.+| + .++.+ ..+|.|.-.|+.+|+.+-+..... .+...-...-.+..|+
T Consensus 333 ~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~ 410 (488)
T cd00216 333 PMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVF 410 (488)
T ss_pred ccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEE
Confidence 233444 2 23222 246789999999998766554320 1111101112456777
Q ss_pred EEEecCCc
Q 011924 449 IGVWDRTY 456 (475)
Q Consensus 449 ~~~~D~~~ 456 (475)
+++.|+.+
T Consensus 411 ~g~~dG~l 418 (488)
T cd00216 411 AGAADGYF 418 (488)
T ss_pred EECCCCeE
Confidence 77666543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00046 Score=69.50 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=96.2
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE-
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL- 386 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~- 386 (475)
-.+++..+++++.|+.-|.+++|+-..++. ..++ +-.+.+..++.|++..++|.|++.|.|.++-+.+...+-..+
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 446677899999999999999999665543 3333 344556677889999999999999999999886533222111
Q ss_pred ----ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC----eeEEEEeccCCCeEEEEEc
Q 011924 387 ----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 387 ----~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~fs 441 (475)
+.|...|++++|++++..|++|...|.|..-.+.+. .....+....++|..+...
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 125678999999999999999999999999887761 1222333455677777665
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.059 Score=53.97 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=110.7
Q ss_pred EEEEEeCCCCCeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 237 AVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 237 ~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
...+ ||+|++++++-+..| .|+++|+++++.+...-...... .+.
T Consensus 128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-----------------------------~~~ 176 (414)
T PF02897_consen 128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-----------------------------SVS 176 (414)
T ss_dssp EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-----------------------------EEE
T ss_pred eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-----------------------------eEE
Confidence 3445 999998766655554 59999999997654321111111 478
Q ss_pred ECCCCcEEEEEeCC-----------CcEEEEECCCCce--EEEeecCCCC--eEEEEEecCCCEEEEEeC---C-CeEEE
Q 011924 313 QSPDGKLLIIVGDN-----------PDGLLVDSMTGKT--IASLCGHLDF--SFASAWHPNGVTFATGNQ---D-KTCRI 373 (475)
Q Consensus 313 ~sp~g~~l~~~~~d-----------g~i~iwd~~~~~~--~~~l~~h~~~--v~~~~~sp~g~~l~t~s~---d-g~v~i 373 (475)
|.++++.|+....+ ..|+.|.+.++.. ...+...... ...+..++++++|+..+. + ..+.+
T Consensus 177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 99998887766432 2377888776643 2445443322 567889999998875433 2 34778
Q ss_pred EECCCC---CceEEEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECCCCee---EEEEeccCCCeEEEEEcCCC
Q 011924 374 WDLRNL---SESVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYE---KEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 374 wd~~~~---~~~~~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~fspdg 444 (475)
.|+... ......+......+....-+..+.+++... .++.|.-.++.+... ...+..+...+.-..++..+
T Consensus 257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence 888652 223444444333443333333444444432 346787788877652 22455555543333344456
Q ss_pred CeEEEEEecCCcceEEEEEee
Q 011924 445 ESLFIGVWDRTYGSLLEYGRC 465 (475)
Q Consensus 445 ~~l~~~~~D~~~~~ll~~~~~ 465 (475)
.+|++...++....|..+...
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT
T ss_pred CEEEEEEEECCccEEEEEECC
Confidence 678877666666555555443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.076 Score=52.94 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=60.5
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-CC
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-LG 391 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-~~ 391 (475)
++.+....+....++.+.+.+-...+. +. ..+++..++.||+++++|.-..+|.+.|....- .+....+... ..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecCcCC
Confidence 444455555555556666454332211 22 245799999999999999999999999988754 4555555443 34
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
....+.|.-+...++.- ...|.++.
T Consensus 261 ~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 261 PPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 56677787654333322 33455555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.031 Score=55.67 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=52.5
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCC
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFG 433 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~ 433 (475)
++.+....+....++.+.+.+... ... +. ..+++..++.||+|++||.-..+|.+.|....-.+....+.. -..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENS-FKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccc-ccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 444555555555556666444322 111 22 246899999999999999999999999987544333333322 235
Q ss_pred CeEEEEEcCCC
Q 011924 434 EISGISFSPDT 444 (475)
Q Consensus 434 ~i~~l~fspdg 444 (475)
.+..+.|.-+.
T Consensus 261 ~p~~~~WCG~d 271 (410)
T PF04841_consen 261 PPKQMAWCGND 271 (410)
T ss_pred CCcEEEEECCC
Confidence 66677776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=43.96 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=34.8
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
++++..+..|...+.+++|+|.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.018 Score=57.51 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=107.9
Q ss_pred EEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
..|+. +|+++++ ..+|...++........ .. +.-....| .+.++ +++-....+|.++.--+....
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~r~k----~~----G~g~~~vw--~~~n~--yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK----AF----GSGLSFVW--SSRNR--YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE----EE----EE-SEEEE---TSSE--EEEE-TTS-EEEEETTEE-TT
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCCccc----cc----CceeEEEE--ecCcc--EEEEECCCeEEEEEcCccccc
Confidence 34444 7777777 45788888873222211 11 11233445 77554 566556888999743233333
Q ss_pred eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCe
Q 011924 271 KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFS 350 (475)
Q Consensus 271 ~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v 350 (475)
..+..+..+. .+- + |.+|++.+.+ .|.+||..+++.++++... +|
T Consensus 103 k~i~~~~~~~-----------------------------~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~v 147 (443)
T PF04053_consen 103 KSIKLPFSVE-----------------------------KIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AV 147 (443)
T ss_dssp -----SS-EE-----------------------------EEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-
T ss_pred eEEcCCcccc-----------------------------eEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CC
Confidence 3454444444 332 2 8888777655 7999999999999998733 48
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCC-----------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 351 FASAWHPNGVTFATGNQDKTCRIWDLRNLS-----------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-----------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+.|+++|.++|..+.+ ++.|++... . .....+..-...|.+.+|.-+ .++-.+.. .|+. +
T Consensus 148 k~V~Ws~~g~~val~t~~-~i~il~~~~-~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 148 KYVIWSDDGELVALVTKD-SIYILKYNL-EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp EEEEE-TTSSEEEEE-S--SEEEEEE-H-HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred cEEEEECCCCEEEEEeCC-eEEEEEecc-hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 999999999999999866 577777632 1 034444443557889999866 44433334 6666 3
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
-.|. ...+.....++.=+...|..+.|+..-.|+++
T Consensus 221 ~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v 256 (443)
T PF04053_consen 221 VNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNV 256 (443)
T ss_dssp ETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--E
T ss_pred EcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCE
Confidence 3443 22333334455566667766667666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.077 Score=51.13 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=106.0
Q ss_pred CcEEEEEec---------C-ceEEEEeCCCC---CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 199 DKLLVAGGF---------Q-GELICKHLDRP---GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 199 ~~~lvsg~~---------d-g~i~vw~~~~~---~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
..+|++|+. . |.|.++.+... .............++|.+++-+ +| . ++++ ..+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~---~~-~-lv~~-~g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF---NG-R-LVVA-VGNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE---TT-E-EEEE-ETTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh---CC-E-EEEe-ecCEEEEEEcc
Confidence 467777753 2 99999999874 1222223334457889998773 33 3 4444 34889999997
Q ss_pred CCe-eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-CceEEEe
Q 011924 266 KYQ-LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASL 343 (475)
Q Consensus 266 ~~~-~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~l 343 (475)
..+ ....-....++. .++....++++++|.....+.++..+. +..+..+
T Consensus 116 ~~~~l~~~~~~~~~~~-----------------------------i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFY-----------------------------ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp TTSSEEEEEEE-BSSS-----------------------------EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred CcccchhhheecceEE-----------------------------EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 766 444333322222 334444466999998877788774432 3323333
Q ss_pred ec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC------C--ceEEEEecC-CCceEEE---EEcc--CCC----
Q 011924 344 CG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL------S--ESVAVLKGN-LGAIRSI---RYTS--DGR---- 403 (475)
Q Consensus 344 ~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~------~--~~~~~~~~~-~~~v~~l---~~sp--dg~---- 403 (475)
.. ....+.++.+-++++.++.+..+|.+.++..... + +......-| ...|+++ .+.| .+.
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~ 246 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN 246 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence 32 3456888888877789999999999999987521 1 222222222 2356666 4445 222
Q ss_pred --EEEEEcCCCeEEEE
Q 011924 404 --YMATAEPADFVHVY 417 (475)
Q Consensus 404 --~la~~~~dg~i~iw 417 (475)
.++.++.+|.|.+.
T Consensus 247 ~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 247 RPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEEETTS-EEEE
T ss_pred cceEEEEecCCEEEEE
Confidence 47777888887743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.058 Score=49.45 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=104.0
Q ss_pred eEEEEEE--c-CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--K-DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~-~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.++.|++ + +.++++....+.|.-.++. ++... .......+-.-.|++ ..++.+ +++.-.++.+.++++...
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~EgI~y--~g~~~~-vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEGITY--LGNGRY-VLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEEEEE---STTEE-EEEETTTTEEEEEEE---
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCceeEEE--ECCCEE-EEEEcCCCcEEEEEEecc
Confidence 4889999 3 4466667777888777764 33332 222222345677887 666643 555556889999988432
Q ss_pred ee------eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC---Cc
Q 011924 268 QL------SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT---GK 338 (475)
Q Consensus 268 ~~------~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~---~~ 338 (475)
.. ...+.....-. .. ..+..++|+|.++.|+++-...-..|+.+.. +.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~-----------------~N------~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNK-----------------GN------KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp -TT--EEEEEEEE---S--------------------S------S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred ccccchhhceEEecccccC-----------------CC------cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 11 11122110000 00 1122899999877777776665566666543 22
Q ss_pred eEEEe--------ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCC---------CceEEEEEcc
Q 011924 339 TIASL--------CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------GAIRSIRYTS 400 (475)
Q Consensus 339 ~~~~l--------~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~---------~~v~~l~~sp 400 (475)
.+... ......+.+++++| .+++++.+.....|.++|. . ++++..+.-.. ...-.|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-Q-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-C-CCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 11334578899999 5677777778899999995 4 66666554322 2466899999
Q ss_pred CCCEEEEEcCCCeEEEE
Q 011924 401 DGRYMATAEPADFVHVY 417 (475)
Q Consensus 401 dg~~la~~~~dg~i~iw 417 (475)
+|++.++...+ ..++|
T Consensus 232 ~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 232 DGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp T--EEEEETTT-EEEEE
T ss_pred CCCEEEEcCCc-eEEEe
Confidence 99877777654 44443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0052 Score=60.49 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred ceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeec-----CCCCceeEEEEEeC---CCC--CeEEEEEeCCC
Q 011924 189 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-----DDNAITNAVEIYGS---PSG--AVHFTASNNDC 257 (475)
Q Consensus 189 ~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~s---~~g--~~~l~s~s~dg 257 (475)
..+|++++. +=.+++.|..+|.+.|.|++.+...+...+.. .....++++.|.-. .++ ..++++|.+.|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 568999999 77899999999999999998777665433322 23445777777421 122 24578888999
Q ss_pred eEEEEECCC---CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee-eeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 258 GVRDFDMGK---YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL-CLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 258 ~v~iwd~~~---~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.+.+|.+.- +.....+. ... ......+..+...+..++..-.... .++.+.=...-.-+++......++++.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~--~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFA--GAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEE--EEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred CEEEEEEecCCCCceEEEEe--ecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999998741 11111111 000 0111222233333444443211110 000000000011233334456799999
Q ss_pred CCCCceEEEeecCCCCeEEEEEe-----cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC----CceEEEEEccCCCE
Q 011924 334 SMTGKTIASLCGHLDFSFASAWH-----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL----GAIRSIRYTSDGRY 404 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~s-----p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~----~~v~~l~~spdg~~ 404 (475)
..+.+..+......-....+++- ..+..|++-..+|.|+++.+-. -+.+..+.-.. ..+....++++|..
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccccccccEECCCCCE
Confidence 88887766554222233344553 3577888889999999999976 34444444321 23456778999998
Q ss_pred EEEEcCCCeEEEEE
Q 011924 405 MATAEPADFVHVYD 418 (475)
Q Consensus 405 la~~~~dg~i~iwd 418 (475)
++..+.. .+.++.
T Consensus 321 ~~~~gps-E~~l~s 333 (395)
T PF08596_consen 321 FYWTGPS-EIQLFS 333 (395)
T ss_dssp EEE-SSS-EEEEEE
T ss_pred EEEeCcc-cEEEEE
Confidence 8777654 344433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0036 Score=64.47 Aligned_cols=244 Identities=13% Similarity=0.057 Sum_probs=137.1
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.+++++| ..-.|+.|-.-|.+.+|...+.+.. .....|..++..+.| |++|.. ++++.+=|.|.+|......
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~w--S~~G~~-l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDW--SHDGTV-LMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceee---eeccCCCCCceeEEe--cCCCCe-EEEcCCCceeEEEEeeecc
Confidence 5667888 4456677778899999987765443 556678999999999 999996 9999999999999775211
Q ss_pred eee---eeec-------cccEEeccCCceE---------------EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE
Q 011924 269 LSK---HFRF-------PWPVNVSSSYCII---------------LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV 323 (475)
Q Consensus 269 ~~~---~~~~-------~~~v~~s~~~~~l---------------~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 323 (475)
.+. .+.| -+..+.++++..+ -...-|-..+-. ... --.-.|+|..+.++
T Consensus 135 ~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~-----rs~-~ksgv~~g~~F~~~ 208 (1416)
T KOG3617|consen 135 EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAE-----RSD-EKSGVPKGTEFLFA 208 (1416)
T ss_pred ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhh-----ccc-cccCCCCCcEEEEE
Confidence 111 1111 0111122221111 111112111100 000 11235788999999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC----------------c------
Q 011924 324 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS----------------E------ 381 (475)
Q Consensus 324 ~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~----------------~------ 381 (475)
+.+|+|+..| +.|++....+.... ..+-|.|-...++..-.+-++.++=+...+ +
T Consensus 209 ~~~GtVyyvd-q~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~ 285 (1416)
T KOG3617|consen 209 GKSGTVYYVD-QNGRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIAC 285 (1416)
T ss_pred cCCceEEEEc-CCCcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccc
Confidence 9999999888 45666555442211 123344422222222222222222211100 0
Q ss_pred --eEEEEe-------cCCCceEEEEEccCCCEEEEEcCCCeEEEEE-CCCCe------eEEEEe---ccCCCeEEEEEcC
Q 011924 382 --SVAVLK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYD-VKSGY------EKEQEI---DFFGEISGISFSP 442 (475)
Q Consensus 382 --~~~~~~-------~~~~~v~~l~~spdg~~la~~~~dg~i~iwd-~~~~~------~~~~~~---~~~~~i~~l~fsp 442 (475)
....+. .....+.+++++..+..|+.|...|.+.+|- +.++. ...++. ...+.|+.+.|.|
T Consensus 286 sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 286 SESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP 365 (1416)
T ss_pred ccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc
Confidence 000000 1234689999999999999999999999995 33221 122222 2457899999999
Q ss_pred CCCeEEE
Q 011924 443 DTESLFI 449 (475)
Q Consensus 443 dg~~l~~ 449 (475)
--+.+++
T Consensus 366 ~k~~~av 372 (1416)
T KOG3617|consen 366 IKSTAAV 372 (1416)
T ss_pred ccchhhh
Confidence 6555544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.049 Score=51.71 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=67.2
Q ss_pred eEEECCCCcEEEEEeC-CCcEEEEECCC--C----ce-EEEeecCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCC
Q 011924 310 HSSQSPDGKLLIIVGD-NPDGLLVDSMT--G----KT-IASLCGHLDFSFASAWHPNGVTFATGNQDK-TCRIWDLRNLS 380 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~-dg~i~iwd~~~--~----~~-~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-~v~iwd~~~~~ 380 (475)
.++||||++.|..+.. .+.|+-|++.. + +. ...+....+..-.++...+|++-+++-..| .|.+|+.. +
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G 244 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--G 244 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--C
Confidence 8999999988887754 46777776641 2 11 122223445666778888898886665654 89999985 7
Q ss_pred ceEEEEecCCCceEEEEE-ccCCCEEEEEc
Q 011924 381 ESVAVLKGNLGAIRSIRY-TSDGRYMATAE 409 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~-spdg~~la~~~ 409 (475)
+.+..+.-+...+++++| .|+.+.|.+.+
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 788888877677888888 45556555444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.076 Score=49.85 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=123.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee----
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF---- 273 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~---- 273 (475)
.++.|+.|+.+| +.++++...... ... .+...|..+.+ .++-+.+++.+ |+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~--~~i--~~~~~I~ql~v--l~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKP--TRI--LKLSSITQLSV--LPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccc--eeE--eecceEEEEEE--ecccCEEEEEc--CCccEEEEchhhcccccccccc
Confidence 678899998888 888888322222 111 12223788877 66666544443 599999998764433311
Q ss_pred -----------eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE--ECCCCcEEEEEeCCCcEEEEECCCC---
Q 011924 274 -----------RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS--QSPDGKLLIIVGDNPDGLLVDSMTG--- 337 (475)
Q Consensus 274 -----------~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~--~sp~g~~l~~~~~dg~i~iwd~~~~--- 337 (475)
.....+. ..+ -.+.+...+++.....|.+|.....
T Consensus 77 ~~~~~~~~~~~~~~~~v~-----------------------------~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~ 127 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVS-----------------------------FFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS 127 (275)
T ss_pred ccccccccccccccCCee-----------------------------EEeeccccccceEEEEEECCEEEEEEEECCccc
Confidence 1111222 222 1233444444445558888876642
Q ss_pred --ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC------------CCceEEEEEccCCC
Q 011924 338 --KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN------------LGAIRSIRYTSDGR 403 (475)
Q Consensus 338 --~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~------------~~~v~~l~~spdg~ 403 (475)
+....+. -.+.+.+++|. ++.++.|..++ ..+.|+.+ +.....+... ..++..+.. +++.
T Consensus 128 f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 201 (275)
T PF00780_consen 128 FSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNE 201 (275)
T ss_pred ccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEe-CCce
Confidence 3455555 45788999998 56778777654 78889874 3332222111 123333333 3456
Q ss_pred EEEEEcCCCeEEEEECCCCeeEE-EEeccCCCeEEEEEcCCCCeEEEEEe------cCCcceEEEEEeecceeeec
Q 011924 404 YMATAEPADFVHVYDVKSGYEKE-QEIDFFGEISGISFSPDTESLFIGVW------DRTYGSLLEYGRCRNYSYLD 472 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~fspdg~~l~~~~~------D~~~~~ll~~~~~~~~~~l~ 472 (475)
+|++- +..-.+.| ..|...+ ........+..+++. ..||++-.. +-.-+.+++....++..+|.
T Consensus 202 ~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~ 272 (275)
T PF00780_consen 202 FLLCY--DNIGVFVN-KNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLC 272 (275)
T ss_pred EEEEe--cceEEEEc-CCCCcCcccEEEcCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEe
Confidence 66653 44444455 4454443 233334566666664 346665433 22334666666666555553
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0022 Score=62.77 Aligned_cols=145 Identities=15% Similarity=0.208 Sum_probs=100.3
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc----
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK---- 318 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~---- 318 (475)
..+.+.++.++.....++-.|+++|+.+........|+ -+.+.|+.+
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~-----------------------------mv~~t~d~K~~Ql 392 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDIN-----------------------------MVDITPDFKFAQL 392 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCCcc-----------------------------eeeccCCcchhcc
Confidence 33455567777777888889999999998888655555 445555432
Q ss_pred ---EEEEEeCCCcEEEEECC-CCc-eEEEeecCC----CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC
Q 011924 319 ---LLIIVGDNPDGLLVDSM-TGK-TIASLCGHL----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 319 ---~l~~~~~dg~i~iwd~~-~~~-~~~~l~~h~----~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~ 389 (475)
.-++|-.+..|.-||.| .++ .+..-++|. ....|.+-..+ -++|+||.+|-||+||- ...+....+++-
T Consensus 393 ~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgL 470 (644)
T KOG2395|consen 393 TSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGL 470 (644)
T ss_pred cccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhccccc
Confidence 12345567789999988 333 333334433 12334443334 48999999999999997 435566677888
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+|..+..+.+|++|++.+. ..+.+.++
T Consensus 471 G~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 471 GDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred CCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 889999999999999887764 45666664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.078 Score=53.08 Aligned_cols=217 Identities=10% Similarity=0.069 Sum_probs=113.8
Q ss_pred cccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCc
Q 011924 131 FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQG 209 (475)
Q Consensus 131 ~~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg 209 (475)
+.++++.+.+.++.|....++...++....-+... ...-..+.| ..+.+++-...+
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----------------------~G~g~~~vw~~~n~yAv~~~~~ 89 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----------------------FGSGLSFVWSSRNRYAVLESSS 89 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----------------------EEE-SEEEE-TSSEEEEE-TTS
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----------------------cCceeEEEEecCccEEEEECCC
Confidence 34677888888888888888888888744332211 123345566 445566666688
Q ss_pred eEEEE-eCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 210 ELICK-HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 210 ~i~vw-~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
+|.++ ++...... .+.. +.++-.++ + |.. |...+ ++.|.+||+.+++.++.+..+. |.
T Consensus 90 ~I~I~kn~~~~~~k---~i~~----~~~~~~If--~-G~L-L~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk-------- 148 (443)
T PF04053_consen 90 TIKIYKNFKNEVVK---SIKL----PFSVEKIF--G-GNL-LGVKS-SDFICFYDWETGKLIRRIDVSA-VK-------- 148 (443)
T ss_dssp -EEEEETTEE-TT------------SS-EEEEE----SSS-EEEEE-TTEEEEE-TTT--EEEEESS-E--E--------
T ss_pred eEEEEEcCccccce---EEcC----CcccceEE--c-CcE-EEEEC-CCCEEEEEhhHcceeeEEecCC-Cc--------
Confidence 88884 44332211 1111 11223332 2 765 44443 3489999999999999988553 77
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-----------ceEEEeecCCCCeEEEEEec
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-----------KTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-----------~~~~~l~~h~~~v~~~~~sp 357 (475)
.+.|+++|.+++..+.+ .+.|++.... .....+..-...|.+.+|.-
T Consensus 149 ---------------------~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~ 206 (443)
T PF04053_consen 149 ---------------------YVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE 206 (443)
T ss_dssp ---------------------EEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred ---------------------EEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence 89999999999999766 5777775422 03333433356788889976
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+ .|+-.+.. .++. +.+ + ...++..-..++.=+.+.|..+.|.....++.|..+.+.
T Consensus 207 d--~fiYtT~~-~lkY--l~~-G-e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 207 D--CFIYTTSN-HLKY--LVN-G-ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp T--EEEEE-TT-EEEE--EET-T-EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred C--EEEEEcCC-eEEE--EEc-C-CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 5 44444444 6665 322 2 233333334466667777766677777777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=73.35 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=85.1
Q ss_pred eEEECCCCcEEEEEe----CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSPDGKLLIIVG----DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~----~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
-.+|+|...++++++ ..|.+.||- .+|.+-.... .+-.+.++||||..-.|+.|=.-|.+.+|.... .+....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeeee
Confidence 347999999999886 457787774 5676543332 233467799999988889988889999999865 454555
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
...|..+|..+.|||+|..|+++..-|.|++|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 56688999999999999999999999999999865
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.014 Score=45.65 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=66.3
Q ss_pred eEEECC---CC-cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSP---DG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp---~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
++++.. +| +.|++|+.|..|++|+- ...+..+. ..+.|.+++-... ..|+.+..+|||.+|+-. .+.-+
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR- 76 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR- 76 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-
Confidence 555443 33 57899999999999973 46666776 4556777766655 679999999999999863 23222
Q ss_pred EecCCCceEEEEE-ccCC---CEEEEEcCCCeEEE
Q 011924 386 LKGNLGAIRSIRY-TSDG---RYMATAEPADFVHV 416 (475)
Q Consensus 386 ~~~~~~~v~~l~~-spdg---~~la~~~~dg~i~i 416 (475)
++... .+.++++ ..+| +.|++|-.+|.|-+
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22222 3555554 3333 47889988887743
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=60.11 Aligned_cols=180 Identities=10% Similarity=0.020 Sum_probs=98.3
Q ss_pred CceeEEEEEeCCCCCeEEEEEe-----CCC--eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 233 AITNAVEIYGSPSGAVHFTASN-----NDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s-----~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
..+...++ +|+|+.++++.. .|. .|.+++.. +.. ..+.......
T Consensus 350 ~~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t------------------------- 400 (591)
T PRK13616 350 GNITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLT------------------------- 400 (591)
T ss_pred cCcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCC-------------------------
Confidence 35677788 999998555542 244 44444542 222 2222222344
Q ss_pred eeeeeEEECCCCcEEEEEeCC------------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 306 LCLQHSSQSPDGKLLIIVGDN------------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~~~d------------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
...|+|+|+.+++..+. +.+.+.++..+.... .....|..+.|||||..+|... ++.|.+
T Consensus 401 ----~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 401 ----RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ----CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 67899998877776533 223333333332221 2345799999999999988876 466666
Q ss_pred ---EECCCCCc-eE---EEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEE--ECCCCeeEEEEec--cCCCeEEEEEc
Q 011924 374 ---WDLRNLSE-SV---AVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVY--DVKSGYEKEQEID--FFGEISGISFS 441 (475)
Q Consensus 374 ---wd~~~~~~-~~---~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iw--d~~~~~~~~~~~~--~~~~i~~l~fs 441 (475)
-.... +. .+ ..+.. ....+.++.|.+++.++ ++..++...+| ++. |.....+.. ...++..++=+
T Consensus 473 a~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 473 AVVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAAS 549 (591)
T ss_pred EEEEeCCC-CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecC-CccccccCCCCccCceEEEecC
Confidence 33222 22 11 11222 22346889999999855 54444433444 444 222222122 24567777777
Q ss_pred CCCCeEEEEEecC
Q 011924 442 PDTESLFIGVWDR 454 (475)
Q Consensus 442 pdg~~l~~~~~D~ 454 (475)
++ .|+++..++
T Consensus 550 ~~--~iyv~~~~g 560 (591)
T PRK13616 550 PS--TVYVTDARA 560 (591)
T ss_pred Cc--eEEEEcCCc
Confidence 63 465555443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0008 Score=66.99 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE-EEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
-.+.-+.|+|.-.++|++..+|.|.+..+. .+.+-++..+...++ +++|.|||+.||+|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 356778999999999999999999998884 566777775665666 99999999999999999999999999988776
Q ss_pred EEe-ccCCCeEEEEEcC
Q 011924 427 QEI-DFFGEISGISFSP 442 (475)
Q Consensus 427 ~~~-~~~~~i~~l~fsp 442 (475)
... .....|+++-|+|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345677777764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0047 Score=64.09 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=82.4
Q ss_pred eeeEEECCCCcEEEEEe------CCC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCC
Q 011924 308 LQHSSQSPDGKLLIIVG------DNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIWDLRN 378 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~------~dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g~v~iwd~~~ 378 (475)
+.++++||+|+.++... .+. .|.+++. .+.......+. ....-.|+|+|..+++.+.. ..+++.+-..
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 34889999999988775 233 4555554 23332223332 37788999999988887543 2233332211
Q ss_pred CCceEEEE--e------cCCCceEEEEEccCCCEEEEEcCCCeEEE---EECCCCee-E---EEEec-cCCCeEEEEEcC
Q 011924 379 LSESVAVL--K------GNLGAIRSIRYTSDGRYMATAEPADFVHV---YDVKSGYE-K---EQEID-FFGEISGISFSP 442 (475)
Q Consensus 379 ~~~~~~~~--~------~~~~~v~~l~~spdg~~la~~~~dg~i~i---wd~~~~~~-~---~~~~~-~~~~i~~l~fsp 442 (475)
...+..+ . ...+.|..++|||||+.||... ++.|++ -....|.. + ..+.. ....+.++.|.+
T Consensus 429 -~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 429 -TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred -CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 1111111 0 2245799999999999888766 467777 44445541 1 11222 223468899999
Q ss_pred CCCeEEEEEec
Q 011924 443 DTESLFIGVWD 453 (475)
Q Consensus 443 dg~~l~~~~~D 453 (475)
++.. +++..+
T Consensus 507 ~~~L-~V~~~~ 516 (591)
T PRK13616 507 GDSL-VVGRSD 516 (591)
T ss_pred CCEE-EEEecC
Confidence 9984 455443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.034 Score=43.49 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=70.8
Q ss_pred eeEEEEE-eCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIY-GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~-~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
|+++++. +..+|..-|++||.|..||+|+- ...+..+.....+. +++-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~-----------------------------~L~~ 50 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVT-----------------------------SLCS 50 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceE-----------------------------EEEE
Confidence 4555553 24456667999999999999985 46777777677777 6665
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-CC---CEEEEEeCCCeEE
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NG---VTFATGNQDKTCR 372 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g---~~l~t~s~dg~v~ 372 (475)
... ..++.+..+|+|-+|+- ...+.+.+. ...+.++++.. ++ .-|++|-.+|.|-
T Consensus 51 ~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 51 LGG-GRFAYALANGTVGVYDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCC-CEEEEEecCCEEEEEeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 554 56888999999999984 334445553 33466666554 32 3688888888764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0018 Score=61.05 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=96.4
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
.....+...|..++| ||...-++..++.+.+|+|.|+++...+..+....++-
T Consensus 187 q~lp~~g~~Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~w------------------------- 239 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAF--SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIW------------------------- 239 (463)
T ss_pred hcccccchhhhhhcc--CccccceeeeeccCceEEEEecccceeeeheeccCCce-------------------------
Confidence 466677888999999 88877678899999999999999999888888667777
Q ss_pred eeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCc-eEEEeec--CCCCeEEE------EEecCCCEEEEEeCCCeEEEEE
Q 011924 306 LCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGK-TIASLCG--HLDFSFAS------AWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 306 ~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~-~~~~l~~--h~~~v~~~------~~sp~g~~l~t~s~dg~v~iwd 375 (475)
+.+|.-+. ..+.+|-.+|.|++||++... ++..+.+ ...+|..+ ...+.|.+++..+.+ +..|.
T Consensus 240 ----SC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~e 313 (463)
T KOG1645|consen 240 ----SCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYE 313 (463)
T ss_pred ----eeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhh
Confidence 88998855 456666789999999998543 2333322 11223222 233445555555543 56677
Q ss_pred CCCCC-ceEEEEe-cCCCceEEEEEccCCCEEE
Q 011924 376 LRNLS-ESVAVLK-GNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 376 ~~~~~-~~~~~~~-~~~~~v~~l~~spdg~~la 406 (475)
+.... .+..++. +..+...++++.+..++++
T Consensus 314 i~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 314 IVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred hhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 64322 1222222 2345666777776555443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.028 Score=56.28 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=87.2
Q ss_pred eEEECCCCcEEEEE-eCCC----cEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEeCCC-----------eEE
Q 011924 310 HSSQSPDGKLLIIV-GDNP----DGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDK-----------TCR 372 (475)
Q Consensus 310 ~~~~sp~g~~l~~~-~~dg----~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s~dg-----------~v~ 372 (475)
..++||+|+++|.+ +..| .++++|+.+|+.+.. +... ....+.|.++++.|+....+. .|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 56899999999876 3333 599999999987653 2221 122399999988877665332 478
Q ss_pred EEECCCCCce-EEEEecCCCc--eEEEEEccCCCEEEEEcC---C-CeEEEEECCCC----eeEEEEeccCCCe-EEEEE
Q 011924 373 IWDLRNLSES-VAVLKGNLGA--IRSIRYTSDGRYMATAEP---A-DFVHVYDVKSG----YEKEQEIDFFGEI-SGISF 440 (475)
Q Consensus 373 iwd~~~~~~~-~~~~~~~~~~--v~~l~~spdg~~la~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~i-~~l~f 440 (475)
.|.+.+.... ...+...... ...+..++||++|+..+. + ..+++.++..+ .....+......+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 8888653322 3444443332 568889999998875433 2 45888898874 2333333333333 33333
Q ss_pred cCCCCeEEEEEecCCcceEEEEE
Q 011924 441 SPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~ll~~~ 463 (475)
. .+.+++.+-.+..-+.|+.+.
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEec
Confidence 3 434444444445555666554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.021 Score=51.87 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=97.3
Q ss_pred eEEECCC-CcEEEEEeCCCc-EEEEECCCCceEEEeecCCCCeE--EEEEecCCCEEEEEeC-----CCeEEEEECCCCC
Q 011924 310 HSSQSPD-GKLLIIVGDNPD-GLLVDSMTGKTIASLCGHLDFSF--ASAWHPNGVTFATGNQ-----DKTCRIWDLRNLS 380 (475)
Q Consensus 310 ~~~~sp~-g~~l~~~~~dg~-i~iwd~~~~~~~~~l~~h~~~v~--~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~~ 380 (475)
.++++|. ..-++.+-.-|+ ..++|....+...++...++.-+ .=.|||||.+|+..-. -|.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 6778884 344555544443 46888887776666543332211 2369999999987643 3689999999877
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCC------------------CeEEEEECCCCeeEEEEe----ccCCCeEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------------------DFVHVYDVKSGYEKEQEI----DFFGEISGI 438 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~d------------------g~i~iwd~~~~~~~~~~~----~~~~~i~~l 438 (475)
+.+..+..|.-....+.+.+||+.|+.+... -.+.+.|..+|..+.+.. .+.-.|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 7888888888788899999999999887531 124444555555443322 233568899
Q ss_pred EEcCCCCeEEEEEec
Q 011924 439 SFSPDTESLFIGVWD 453 (475)
Q Consensus 439 ~fspdg~~l~~~~~D 453 (475)
+..+||..++.+-.-
T Consensus 232 d~g~dgtvwfgcQy~ 246 (366)
T COG3490 232 DIGRDGTVWFGCQYR 246 (366)
T ss_pred eeCCCCcEEEEEEee
Confidence 999999877766443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.17 Score=48.08 Aligned_cols=221 Identities=15% Similarity=0.051 Sum_probs=131.5
Q ss_pred EEEcCcEEEEE----------ecCceEEEEeCCCCCceEEEeeecCCC----CceeEEEEEeCCCCCeEEEE-EeCCCeE
Q 011924 195 LAVKDKLLVAG----------GFQGELICKHLDRPGVSFCSRTTYDDN----AITNAVEIYGSPSGAVHFTA-SNNDCGV 259 (475)
Q Consensus 195 l~~~~~~lvsg----------~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~v~~l~~~~s~~g~~~l~s-~s~dg~v 259 (475)
++.+++.++++ -..-.|.+||..+-.......+...+. ...+...+ +.+|+++++. .+--.+|
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGKFLYVQNFTPATSV 120 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSSEEEEEEESSSEEE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCcEEEEEccCCCCeE
Confidence 44566666653 345578899998776555444433211 12234455 8888875443 2455679
Q ss_pred EEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-CC
Q 011924 260 RDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-TG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~~ 337 (475)
.|-|+..++.+..+..+++.. +-| ..+.+.+.+.||.+.-..+. .|
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~--------------------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWL--------------------------------IYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEE--------------------------------EEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred EEEECCCCceeeeecCCCEEE--------------------------------EEecCCCceEEEecCCceEEEEECCCC
Confidence 999999999998888777554 223 12457777788998888887 66
Q ss_pred ceEEEee----cCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecC----------CCceEEEEEccC
Q 011924 338 KTIASLC----GHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGN----------LGAIRSIRYTSD 401 (475)
Q Consensus 338 ~~~~~l~----~h~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~----------~~~v~~l~~spd 401 (475)
+..++.. ...++++ .-++...+..++--+..|.|+--|+.... +....+... .+.-.-+++++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 6653322 1223333 33555555566667789999988886422 112222211 123345788775
Q ss_pred CCEEEEEcC---CC-------eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 402 GRYMATAEP---AD-------FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 402 g~~la~~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
...|++.-. .+ .|.+||+++++.+..+.. ..++.+|..+.+.+=++.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 554444321 11 599999999998887763 3568899999987644433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0034 Score=61.48 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=93.8
Q ss_pred CCCcEEE-EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCC-------EEEEEeCCCeEEEEECCCCCc-eEEE
Q 011924 315 PDGKLLI-IVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-------TFATGNQDKTCRIWDLRNLSE-SVAV 385 (475)
Q Consensus 315 p~g~~l~-~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~-------~l~t~s~dg~v~iwd~~~~~~-~~~~ 385 (475)
.+.++++ .+.....++-.|+..|+.+..+.-+.+ |.-+.+.|+.+ .-+.|-.+..|.-||.|-.+. .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 445556788999999999999987776 77778888543 123455567788899986444 2333
Q ss_pred EecCC----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE-EEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 386 LKGNL----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK-EQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 386 ~~~~~----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
.++|. ....|.+-..+| ++|+|+.+|.|++||- .+..- ..+.+...+|..+..+.+|++|++.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 33332 234455555566 7999999999999995 55443 345566789999999999999987763
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.14 Score=46.78 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=118.5
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
+....-+..+.+ ..+|. ++-+.+.-| .|+.+|+.+++.......+...- . +
T Consensus 41 Hd~~aFTQGL~~--~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F-g-----------------E------ 93 (264)
T PF05096_consen 41 HDPTAFTQGLEF--LDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF-G-----------------E------ 93 (264)
T ss_dssp --TT-EEEEEEE--EETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---E-----------------E------
T ss_pred CCCcccCccEEe--cCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc-c-----------------e------
Confidence 344455677777 56665 466665555 69999999998877766443332 0 0
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.++.- ++++....=.++...+||..+-+.+.++. ..+.-+.++ .++..|+.+.....+.++|..+ .+....+
T Consensus 94 ---Git~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i 165 (264)
T PF05096_consen 94 ---GITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTI 165 (264)
T ss_dssp ---EEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEE
T ss_pred ---eEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEE
Confidence 23333 33444455578899999999999888886 345666676 4677777777777899999876 4445544
Q ss_pred ecC--C---CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec------------c---CCCeEEEEEcCCCCe
Q 011924 387 KGN--L---GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID------------F---FGEISGISFSPDTES 446 (475)
Q Consensus 387 ~~~--~---~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~i~~l~fspdg~~ 446 (475)
.-. . ..+..+-|- +|...|=.=....|...|..+|.....+-- . ..-.++|+|.|.+..
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 432 1 245556665 677777666678899999999987766531 0 235799999999888
Q ss_pred EEEEE
Q 011924 447 LFIGV 451 (475)
Q Consensus 447 l~~~~ 451 (475)
|++.+
T Consensus 245 l~vTG 249 (264)
T PF05096_consen 245 LFVTG 249 (264)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88876
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=40.08 Aligned_cols=38 Identities=32% Similarity=0.705 Sum_probs=33.8
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.+...+..|...|.++.|.|.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.36 Score=49.87 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=44.1
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC-Ccee-EEEEEeCCCCCeEEEEEe-----CCCeEEEEECCCC
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AITN-AVEIYGSPSGAVHFTASN-----NDCGVRDFDMGKY 267 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~-~l~~~~s~~g~~~l~s~s-----~dg~v~iwd~~~~ 267 (475)
+++.+..++.++.+|.|...|..+.+............ ..+. .-.+ . ++ .+++..+ .+|.|..+|.+++
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCC
Confidence 34556677888889999999988777654333211110 0111 1111 1 34 3233322 2689999999998
Q ss_pred eeeeeee
Q 011924 268 QLSKHFR 274 (475)
Q Consensus 268 ~~~~~~~ 274 (475)
+.+-.+.
T Consensus 192 ~~lW~~~ 198 (527)
T TIGR03075 192 KLVWRRY 198 (527)
T ss_pred ceeEecc
Confidence 8776544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.25 Score=46.36 Aligned_cols=228 Identities=14% Similarity=0.121 Sum_probs=123.3
Q ss_pred cCCCeEEEecCCeEEEEec-CCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeC
Q 011924 140 TSKHDVYLMSHFSVIHWSS-LTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 140 ~~~~~v~~~~~~~v~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~ 216 (475)
.....|++..+..++.++. .......+.. ..+|..+.+ +-+.|++= .||.++++++
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--------------------~~~I~ql~vl~~~~~llvL-sd~~l~~~~L 63 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--------------------LSSITQLSVLPELNLLLVL-SDGQLYVYDL 63 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee--------------------cceEEEEEEecccCEEEEE-cCCccEEEEc
Confidence 4455666665555777765 2222222221 123777777 33333333 3599999998
Q ss_pred CCCCceEEEe-----------eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC----C-eeeeeeeccccEE
Q 011924 217 DRPGVSFCSR-----------TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----Y-QLSKHFRFPWPVN 280 (475)
Q Consensus 217 ~~~~~~~~~~-----------~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~----~-~~~~~~~~~~~v~ 280 (475)
..-....... ........+...+......+...++++ ....|.+|.+.. + +..+.+..+..+.
T Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~ 142 (275)
T PF00780_consen 64 DSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPS 142 (275)
T ss_pred hhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcE
Confidence 7544332100 011122233333311134444445544 455888887754 2 4666777777777
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC------------C
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL------------D 348 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~------------~ 348 (475)
+++|. ++.+++|..++ ..+.|+.++.....+.... .
T Consensus 143 -----------------------------~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (275)
T PF00780_consen 143 -----------------------------SIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSK 190 (275)
T ss_pred -----------------------------EEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCC
Confidence 88888 56777776544 7889998776544432111 1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE--EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
++..+.. +++.+|++- +....+.|.. +++.+ .+.-. ..+.++++. ..||++... +.|.||++.++..++
T Consensus 191 ~~~~~~~-~~~e~Ll~~--~~~g~fv~~~--G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 191 PLGIFQL-SDNEFLLCY--DNIGVFVNKN--GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred ceEEEEe-CCceEEEEe--cceEEEEcCC--CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 2333333 344555543 3344444543 33332 23222 245566664 347777665 459999999998877
Q ss_pred EEec
Q 011924 427 QEID 430 (475)
Q Consensus 427 ~~~~ 430 (475)
.+..
T Consensus 262 ~i~~ 265 (275)
T PF00780_consen 262 TIPL 265 (275)
T ss_pred EEEC
Confidence 6653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.046 Score=53.77 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=82.3
Q ss_pred eEEECCCCcEEEEEe-----------CCC-cEEEEECC--CCce--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 011924 310 HSSQSPDGKLLIIVG-----------DNP-DGLLVDSM--TGKT--IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~-----------~dg-~i~iwd~~--~~~~--~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~i 373 (475)
.|+|.++|+++++-. ..+ .|.+++-. .|+. ...+.........+++.++| +++ ++.....++
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~ 95 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFL 95 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEE
Confidence 789999999887753 223 67777643 3432 33444334556889999998 444 445544445
Q ss_pred EECCCCC----ceEEE---EecC----CCceEEEEEccCCCEEEEEcC-------------------CCeEEEEECCCCe
Q 011924 374 WDLRNLS----ESVAV---LKGN----LGAIRSIRYTSDGRYMATAEP-------------------ADFVHVYDVKSGY 423 (475)
Q Consensus 374 wd~~~~~----~~~~~---~~~~----~~~v~~l~~spdg~~la~~~~-------------------dg~i~iwd~~~~~ 423 (475)
.|....+ +.... +... ......++|.|||++.++-+. .+.|.-++..++.
T Consensus 96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 4553211 11111 2221 234678999999986654441 1446666655443
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
...+..-.....+++|+|+|+.+++-..+.
T Consensus 176 -~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 176 -LRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred -EEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 333333334567999999998876644333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.046 Score=50.62 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=87.5
Q ss_pred eEEECCCCcEEEEEe---CCCcEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-CCCCCceEE
Q 011924 310 HSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD-LRNLSESVA 384 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~---~dg~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd-~~~~~~~~~ 384 (475)
+.+++++|+.++... ....++++. .+..... +.+ ..+....|++++...+....+...+++. .........
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 889999999888776 333445544 3333333 233 3677889999988777777677777774 222122222
Q ss_pred EEecC--CCceEEEEEccCCCEEEEEc---CCCeEEEEECC---CC--e----eEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 385 VLKGN--LGAIRSIRYTSDGRYMATAE---PADFVHVYDVK---SG--Y----EKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 385 ~~~~~--~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~---~~--~----~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
.+... .+.|+.+++||||..+|... .++.|.|--+. .+ . .+.........+..+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 22221 12899999999998877665 34677776542 23 1 111111234678999999999877776
Q ss_pred EecC
Q 011924 451 VWDR 454 (475)
Q Consensus 451 ~~D~ 454 (475)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.019 Score=59.64 Aligned_cols=192 Identities=11% Similarity=0.096 Sum_probs=98.9
Q ss_pred EcCcEEEEEecC------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-----eEEEEECC
Q 011924 197 VKDKLLVAGGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDMG 265 (475)
Q Consensus 197 ~~~~~lvsg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-----~v~iwd~~ 265 (475)
.++.++++||.+ ..+.+||............ .........+.+ +|+ +.+.|+.++ ++..||..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R~~~~~~~~----~g~-IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNRCRFSLAVI----DDT-IYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchhhceeEEEE----CCE-EEEECCcCCCCCCceEEEEECC
Confidence 388888899864 3466777765543211111 111111122222 454 467776653 47778877
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC------------------
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP------------------ 327 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg------------------ 327 (475)
+.+....-..+.+... . ++ ..-+|++.++||.++
T Consensus 376 ~~~W~~~~~mp~~r~~--------------------------~-~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 376 DDKWKMLPDMPIALSS--------------------------Y-GM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCeEEECCCCCccccc--------------------------c-cE-EEECCEEEEEeCCCccccccccccccccccccc
Confidence 6544332221211110 0 11 122677777776542
Q ss_pred -----cEEEEECCCCceEEEeec-CCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCC--CCceEEEEecCCCce
Q 011924 328 -----DGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRN--LSESVAVLKGNLGAI 393 (475)
Q Consensus 328 -----~i~iwd~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~d------g~v~iwd~~~--~~~~~~~~~~~~~~v 393 (475)
.+..||..+.+-. .+.. ........+..-+++..+.|+.+ ..|..||..+ ....+..+.......
T Consensus 428 ~~~~~~ve~YDP~td~W~-~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWE-TLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ccccceEEEECCCCCeEe-ecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 4677887766422 1111 11111111222366777777654 2467899875 234444444333333
Q ss_pred EEEEEccCCCEEEEEcCCC--eEEEEECCCCeeE
Q 011924 394 RSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEK 425 (475)
Q Consensus 394 ~~l~~spdg~~la~~~~dg--~i~iwd~~~~~~~ 425 (475)
..+.+ +|++.++|+.++ .+..||+.+.+-.
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 33333 688888998887 6778888776543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0026 Score=40.15 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=31.3
Q ss_pred CceEEEEEccCC---CEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 391 GAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 391 ~~v~~l~~spdg---~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
++|++++|||.. .+|+.+...|.|+|+|++++...+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceEe
Confidence 478999999844 59999999999999999976555544
|
It contains a characteristic DLL sequence motif. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.37 Score=47.12 Aligned_cols=225 Identities=12% Similarity=0.121 Sum_probs=101.0
Q ss_pred cCcEEEEEe-cCceEEEEeCCCCC-ceEEEeeecC-----CCCceeEEEEEeCCCCCeEEEEE--eC----CCeEEEEEC
Q 011924 198 KDKLLVAGG-FQGELICKHLDRPG-VSFCSRTTYD-----DNAITNAVEIYGSPSGAVHFTAS--NN----DCGVRDFDM 264 (475)
Q Consensus 198 ~~~~lvsg~-~dg~i~vw~~~~~~-~~~~~~~~~~-----~~~~v~~l~~~~s~~g~~~l~s~--s~----dg~v~iwd~ 264 (475)
+.++|+..+ .++.|+|.|+.+.. .....++... ..+...--.++--|+|.. ++++ .. -|.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~i-mIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRI-MISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--E-EEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccE-EEEeccCCCCCCCCcEEEEcC
Confidence 456777666 78999999987332 2222233221 111122222222577875 5553 22 246778888
Q ss_pred CCCeeeeeeeccc-cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-------------------
Q 011924 265 GKYQLSKHFRFPW-PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG------------------- 324 (475)
Q Consensus 265 ~~~~~~~~~~~~~-~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~------------------- 324 (475)
++++......... ...|. +.+-|.|..+.+++..
T Consensus 165 ~tf~v~g~We~~~~~~~~g--------------------------YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFG--------------------------YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp TT--EEEE--SB-TT--------------------------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred ccccccceeccCCCCCCCC--------------------------CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 8877766554321 11111 1345566666666542
Q ss_pred -CCCcEEEEECCCCceEEEeecCCC--CeEEEEEec--CCCEEEEE-eCCCeEEEEEC-CCCCc----eEEEEecC----
Q 011924 325 -DNPDGLLVDSMTGKTIASLCGHLD--FSFASAWHP--NGVTFATG-NQDKTCRIWDL-RNLSE----SVAVLKGN---- 389 (475)
Q Consensus 325 -~dg~i~iwd~~~~~~~~~l~~h~~--~v~~~~~sp--~g~~l~t~-s~dg~v~iwd~-~~~~~----~~~~~~~~---- 389 (475)
....+++||+.+.+.++++.--.. .+..+.|.. +..+-.++ .-.++|-.|-- .. +. .+..+...
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-GEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-TEEEEEEEEEE--EE--S
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-CCeeeeEEEECCCcccCc
Confidence 236799999999999999874332 355676654 34433333 23334444432 22 21 12222110
Q ss_pred -------------CCceEEEEEccCCCEEEEEcC-CCeEEEEECCCCee---EEEEec----------------cCCCeE
Q 011924 390 -------------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYE---KEQEID----------------FFGEIS 436 (475)
Q Consensus 390 -------------~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~---~~~~~~----------------~~~~i~ 436 (475)
..-|+.+..|.|.|+|...+. .|.|+.||+..... ..++.. ..+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 234788999999999987764 79999999976433 222220 123456
Q ss_pred EEEEcCCCCeEEEE
Q 011924 437 GISFSPDTESLFIG 450 (475)
Q Consensus 437 ~l~fspdg~~l~~~ 450 (475)
-+..|.||++|.+.
T Consensus 378 MvqlS~DGkRlYvT 391 (461)
T PF05694_consen 378 MVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTSSEEEEE
T ss_pred eEEEccCCeEEEEE
Confidence 78899999999876
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.46 Score=45.99 Aligned_cols=259 Identities=14% Similarity=0.062 Sum_probs=120.1
Q ss_pred EEecCCCeEEEec----CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEE
Q 011924 137 VWATSKHDVYLMS----HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELI 212 (475)
Q Consensus 137 ~~~~~~~~v~~~~----~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~ 212 (475)
.|..++..+++.+ ..++++.+..+++..++.+..+.-.. | .+++.+++.|+-......|+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-----g-----------~~~s~~~~~~~Yv~~~~~l~ 105 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-----G-----------GFLSPDDRALYYVKNGRSLR 105 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-----T------------EE-TTSSEEEEEETTTEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-----c-----------eEEecCCCeEEEEECCCeEE
Confidence 3555555555543 46788888888888777654322111 1 23445556655444445777
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE---------------------eCCCeEEEEECCCCeeee
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS---------------------NNDCGVRDFDMGKYQLSK 271 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~---------------------s~dg~v~iwd~~~~~~~~ 271 (475)
..++.+.+.. .+..-...-+....|..+.++..++-+. .-.+.|..-|+.+++...
T Consensus 106 ~vdL~T~e~~---~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 106 RVDLDTLEER---VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EEETTT--EE---EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EEECCcCcEE---EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 7787775543 2333334444444554355665422111 012345555777777655
Q ss_pred eeec---cccEEeccCCceEEE-----------EEEeecccce-EEEE------eeeeeeEEECCCCcEEEEEe-----C
Q 011924 272 HFRF---PWPVNVSSSYCIILL-----------CRLLNFMTEK-VIIC------LLCLQHSSQSPDGKLLIIVG-----D 325 (475)
Q Consensus 272 ~~~~---~~~v~~s~~~~~l~~-----------~~v~d~~~~~-~~~~------~~~i~~~~~sp~g~~l~~~~-----~ 325 (475)
.+.. .+-+.|+|....+.. -|+|-+.+.. .... ...+.+=-|.|+|..+...+ .
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 5542 245668888777642 3678665422 1111 11445666999999887643 2
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC----------------eEEEEECCCCCceEEEEecC
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK----------------TCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg----------------~v~iwd~~~~~~~~~~~~~~ 389 (475)
+..|.-+|+.+++....... .+..-.--+++|++++-=+.|. -|.++++.. +.. ..+..|
T Consensus 263 ~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~-~~~-~~l~~h 338 (386)
T PF14583_consen 263 DFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA-GRF-RKLARH 338 (386)
T ss_dssp -EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT-TEE-EEEEE-
T ss_pred ceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc-Cce-eeeeec
Confidence 44566778888765433222 2344455578998876533332 466777754 332 222222
Q ss_pred ----------CC-ceEEEEEccCCCEEEEEcC-CCeEEEEE
Q 011924 390 ----------LG-AIRSIRYTSDGRYMATAEP-ADFVHVYD 418 (475)
Q Consensus 390 ----------~~-~v~~l~~spdg~~la~~~~-dg~i~iwd 418 (475)
.. .-..+.|+|||++++..|. .|...||=
T Consensus 339 ~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 339 DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 11 1247899999998776554 56555553
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.41 Score=44.32 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.+...++ +++|+.+.+....++.-.+|-...+...........+. ..+|
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~-----------------------------~PS~ 73 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLT-----------------------------RPSW 73 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccc-----------------------------cccc
Confidence 4667778 99998755554334444444433333333322333555 7789
Q ss_pred CCCCcEEEEEeCCCcEEEEE-CCCCceEE-Eeec--CCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCC--C----
Q 011924 314 SPDGKLLIIVGDNPDGLLVD-SMTGKTIA-SLCG--HLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNL--S---- 380 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd-~~~~~~~~-~l~~--h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~--~---- 380 (475)
++++...++...+...+++. ..++.... .+.. -...|.++++||||..+|... .++.|.|=-+... +
T Consensus 74 d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 74 DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred cCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 99988877776666666663 33333221 2221 112899999999999888776 2466666654311 2
Q ss_pred --ceEEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 381 --ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 381 --~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
.++.........++.+.|.+++.+++.+...+
T Consensus 154 l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 154 LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 12233333346889999999998877776544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.1 Score=54.24 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=111.3
Q ss_pred cCcEEEEEecCc------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC------CeEEEEECC
Q 011924 198 KDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFDMG 265 (475)
Q Consensus 198 ~~~~lvsg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~iwd~~ 265 (475)
.+.+++.||..+ .+.++|........+.... .... ..++++ -+| .++++|+.+ .++..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~-~~~~~~---~~~-~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRC-RVGVAV---LNG-KLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccc-cccEEE---ECC-EEEEEccccCCCcccceEEEecCC
Confidence 456777777774 5667777665444322221 1112 223333 144 468888888 356777877
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE-ECCCCcEEEEEeCCCc-----EEEEECCCCce
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS-QSPDGKLLIIVGDNPD-----GLLVDSMTGKT 339 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~-~sp~g~~l~~~~~dg~-----i~iwd~~~~~~ 339 (475)
+.+....-.-..+-. ..+ ..-+|.+.|+||.+|. +-.||..+.+-
T Consensus 358 ~~~W~~~a~M~~~R~-----------------------------~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRS-----------------------------DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCceeccCCccCccc-----------------------------cceeEEECCEEEEEeccccccccccEEEecCCCCcc
Confidence 766433211111111 111 1237888899988854 66777765542
Q ss_pred EEEeecCCCCeEEEEE-ecCCCEEEEEeCCC------eEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 340 IASLCGHLDFSFASAW-HPNGVTFATGNQDK------TCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 340 ~~~l~~h~~~v~~~~~-sp~g~~l~t~s~dg------~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
. ............+. .-+|.+.++|+.++ +|..||..+. ...+..+........ ++ .-++++.+.|+.+
T Consensus 409 ~-~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 409 T-PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFD 485 (571)
T ss_pred c-ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCcc
Confidence 1 11111112222222 22788888887654 5778887651 112222221111111 22 2367788888877
Q ss_pred C-----eEEEEECCCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEecCC
Q 011924 412 D-----FVHVYDVKSGYEKEQEIDFFGEISGISF-SPDTESLFIGVWDRT 455 (475)
Q Consensus 412 g-----~i~iwd~~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~D~~ 455 (475)
+ +|..||..+.+-... ..-..+...+.. .-++...++|++|+.
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred CCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEecccCc
Confidence 6 377888877544332 111111112111 225666677888765
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.37 Score=42.80 Aligned_cols=131 Identities=12% Similarity=0.087 Sum_probs=79.4
Q ss_pred eEEECCCCcEEEEEeCC---------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC
Q 011924 310 HSSQSPDGKLLIIVGDN---------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNL 379 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d---------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~ 379 (475)
.-..+|+|++++-.-.+ |.++.|-. +..+..+...-+-...++|+.+.+.+... +.+-+|.-||..-.
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~ 190 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCP 190 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCC
Confidence 55789999985432222 23333322 22222222223344678998877766644 55677877884321
Q ss_pred -C-----ceEEEEecC----CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 380 -S-----ESVAVLKGN----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 380 -~-----~~~~~~~~~----~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+ +.+..++.. ....-.++..-+|.+.++.-..++|..+|..+|+.+..+.-....|++++|--
T Consensus 191 tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 191 TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 1 122222211 01112445566788777777788999999999999999888888999999954
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.58 Score=44.28 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=75.0
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE----
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---- 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~---- 385 (475)
.+.-+++|++++++..-....-||.-...-...-..-...|.++.|.|++.+.+.+ +.|.|+.=+..........
T Consensus 149 ~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~ 227 (302)
T PF14870_consen 149 DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIP 227 (302)
T ss_dssp EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-T
T ss_pred eEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCC
Confidence 77888999988887555445567743221111222346789999999998877755 8888888873211111111
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe---ccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+....-.+..++|.+++...|+|+.. . .+.....|+.=.... ...+.+..+.|.+.. .-++-+.+ |.||.|
T Consensus 228 ~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~---G~ll~~ 301 (302)
T PF14870_consen 228 IKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQD---GVLLRY 301 (302)
T ss_dssp TSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-ST---TEEEEE
T ss_pred cccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCC---cEEEEe
Confidence 11122347899999998877777654 2 333444454322222 234678889997664 44555556 455654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.77 Score=43.69 Aligned_cols=266 Identities=17% Similarity=0.136 Sum_probs=143.1
Q ss_pred ccccceeeecccceeEEecCCCeEEEecC-----------CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccce
Q 011924 122 RSVKSTILHFQLRNLVWATSKHDVYLMSH-----------FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 190 (475)
Q Consensus 122 ~~~~~~~~h~~lr~l~~~~~~~~v~~~~~-----------~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (475)
.++.-.+.--.+-+++.++++..+|.+.- .-|..|+..+-....=+. +++..+ .......
T Consensus 27 ~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----iP~k~R-----~~~~~~~ 97 (342)
T PF06433_consen 27 GKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----IPPKPR-----AQVVPYK 97 (342)
T ss_dssp TEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE----ETTS-B-------BS--G
T ss_pred CcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe----cCCcch-----heecccc
Confidence 34444444445566777888888887532 236688877654432111 111101 1111122
Q ss_pred eEEEEEEcCcEEEEEec--CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC-CC
Q 011924 191 QVSTLAVKDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KY 267 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~-~~ 267 (475)
....++.++++++.... .-.|.|-|+...+......+ -.|.-++.+++. -|.+-+.||++.-..+. .|
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-------PGC~~iyP~~~~--~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-------PGCWLIYPSGNR--GFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-------TSEEEEEEEETT--EEEEEETTSCEEEEEETSTS
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-------CCEEEEEecCCC--ceEEEecCCceEEEEECCCC
Confidence 34566668888777543 46677778876554422221 123334334433 36666789999988886 45
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEeec
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCG 345 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~ 345 (475)
+...... .+ |.+... .. +..-+++..+..++..+..|.|+-.|+..... ...+.-
T Consensus 169 k~~~~~t---~~-F~~~~d-------------p~------f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 169 KEAQKST---KV-FDPDDD-------------PL------FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp SEEEEEE---EE-SSTTTS--------------B-------S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CEeEeec---cc-cCCCCc-------------cc------ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 5542221 01 111100 00 00334555566666678889888888765432 122211
Q ss_pred C----------CCCeEEEEEecCCCEEEEEeC--------CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCC-E
Q 011924 346 H----------LDFSFASAWHPNGVTFATGNQ--------DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-Y 404 (475)
Q Consensus 346 h----------~~~v~~~~~sp~g~~l~t~s~--------dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~ 404 (475)
- .+.-.-+++++..+.|++--. |+ .|-++|+.+ ++.+..+... .++.+|+.+.+.+ +
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~-~~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLE-HPIDSIAVSQDDKPL 303 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEE-EEESEEEEESSSS-E
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCC-CccceEEEccCCCcE
Confidence 0 112234678875555554321 11 477778866 7777777742 3677999999876 5
Q ss_pred EEEE-cCCCeEEEEECCCCeeEEEEec
Q 011924 405 MATA-EPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 405 la~~-~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
|++. ..++.|.|||..+|+.++.+..
T Consensus 304 L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 5544 4578999999999998887764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0094 Score=63.21 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCcEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE
Q 011924 316 DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 394 (475)
.+..+++|++.|.+...|.... .+...-..-.++|.+++|+.+|++++.|-.+|.|.+||+.. +++++.+..+..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4557888999999999887542 22222223467999999999999999999999999999976 778888877665555
Q ss_pred EE---EEccCCCEEEEEcCCCe
Q 011924 395 SI---RYTSDGRYMATAEPADF 413 (475)
Q Consensus 395 ~l---~~spdg~~la~~~~dg~ 413 (475)
++ .+..++..+.++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 44 33445556777777774
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.53 E-value=1 Score=46.61 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=108.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC-Cce-------eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AIT-------NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v-------~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
.+..|++++.+|.|+..|..+.+............ ... ..+++ .+.. ++.++.++.|...|..+++.
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~-v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGK-VFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCE-EEEEcCCCEEEEEECCCCCE
Confidence 35677777778889888988776554333211100 000 11222 1233 56677899999999999998
Q ss_pred eeeeeccccEE-eccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEe------CCCcEEEEECCCCce
Q 011924 270 SKHFRFPWPVN-VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVG------DNPDGLLVDSMTGKT 339 (475)
Q Consensus 270 ~~~~~~~~~v~-~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~------~dg~i~iwd~~~~~~ 339 (475)
+-.+.....-. + .+.-+| ++ .++++. .+|.|.-+|.++|+.
T Consensus 143 ~W~~~~~~~~~~~----------------------------~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 143 VWSKKNGDYKAGY----------------------------TITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred Eeecccccccccc----------------------------cccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 87665321100 0 011122 33 344443 267888889988887
Q ss_pred EEEeecCC-------------------------------CCeE-EEEEecCCCEEEEEeCC-----C-----------eE
Q 011924 340 IASLCGHL-------------------------------DFSF-ASAWHPNGVTFATGNQD-----K-----------TC 371 (475)
Q Consensus 340 ~~~l~~h~-------------------------------~~v~-~~~~sp~g~~l~t~s~d-----g-----------~v 371 (475)
+..+..-. ..++ .+++.|...+++.+... + .|
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 76543211 0111 23666666666655422 2 45
Q ss_pred EEEECCCCCceEEEEec--CC-------CceEEEEEccCCC---EEEEEcCCCeEEEEECCCCeeE
Q 011924 372 RIWDLRNLSESVAVLKG--NL-------GAIRSIRYTSDGR---YMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~~--~~-------~~v~~l~~spdg~---~la~~~~dg~i~iwd~~~~~~~ 425 (475)
.-.|+++ ++..=.++. |. .+..-+....+|+ .++.+..+|.+.+.|..+|+.+
T Consensus 274 vAld~~T-G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 274 VARDPDT-GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEcccc-CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 5556655 444333332 21 1111223335776 7889999999999999999875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.69 Score=42.68 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=117.0
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc--cEEeccCCceEEEEEEeecccceEEEEee
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
.+....++++.| +|+.+.++++. +...-.|+=-..|+++++++..+ ...
T Consensus 82 ~g~~~nvS~LTy--np~~rtLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE-------------------------- 132 (316)
T COG3204 82 LGETANVSSLTY--NPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPE-------------------------- 132 (316)
T ss_pred ccccccccceee--CCCcceEEEec-CCCceEEEEecCCceEEEecccccCChh--------------------------
Confidence 344455899999 99999855554 55555566556789988887332 222
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE-------ee--cC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-------LC--GH-LDFSFASAWHPNGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-------l~--~h-~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~ 376 (475)
.+.+..+|.++++--.++.+.++.+..+..+.. |. .+ ....-.++|.|..+.|..+-.-.-++||-+
T Consensus 133 ---~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 133 ---TIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred ---HeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 667777777777777788888777664432211 11 12 344668999998888888877777777776
Q ss_pred CCCCce--EEEEecC-------CCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccC---------CCeEE
Q 011924 377 RNLSES--VAVLKGN-------LGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISG 437 (475)
Q Consensus 377 ~~~~~~--~~~~~~~-------~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~ 437 (475)
...... ++....+ ...|.++.|.+ .+..|+-+-.++.+.-.|.. |..+..+..+. -..-+
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEG 288 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEG 288 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcce
Confidence 432211 1111111 13567888987 44566666667777778854 44444333222 13567
Q ss_pred EEEcCCCCeEEEE
Q 011924 438 ISFSPDTESLFIG 450 (475)
Q Consensus 438 l~fspdg~~l~~~ 450 (475)
++..++|..-+++
T Consensus 289 iamDd~g~lYIvS 301 (316)
T COG3204 289 IAMDDDGNLYIVS 301 (316)
T ss_pred eEECCCCCEEEEe
Confidence 8888888655544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.7 Score=46.75 Aligned_cols=212 Identities=12% Similarity=0.071 Sum_probs=112.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC-----ceeEEEEEeCC--------------CCCeEEEEEeCCCe
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-----ITNAVEIYGSP--------------SGAVHFTASNNDCG 258 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~s~--------------~g~~~l~s~s~dg~ 258 (475)
-++.|+.++.++.|...|..+.+............. ....+.++-.| .+.. ++.++.|+.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r-V~~~T~Dg~ 271 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARR-IILPTSDAR 271 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCE-EEEecCCCe
Confidence 356777777788888888777665443322111110 11223332221 2233 667778999
Q ss_pred EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeC----------C
Q 011924 259 VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGD----------N 326 (475)
Q Consensus 259 v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~----------d 326 (475)
|.-.|.++++.+..|.....+.+...-. +...+. ..+.-+| .+..+++++. +
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g--------~~~~g~--------~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMG--------TTPPGY--------YYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccC--------cCCCcc--------cccccCCEEECCEEEEEecccccccccCCC
Confidence 9999999999998877655554111000 000000 0111122 2345555532 6
Q ss_pred CcEEEEECCCCceEEEeecC---------CCC--------e-EEEEEecCCCEEEEEeC------------------CCe
Q 011924 327 PDGLLVDSMTGKTIASLCGH---------LDF--------S-FASAWHPNGVTFATGNQ------------------DKT 370 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h---------~~~--------v-~~~~~sp~g~~l~t~s~------------------dg~ 370 (475)
|.|+-+|.++|+.+..+..- .+. + ...++.|...+++.+.. .+.
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 88999999999988776420 000 1 12344554444444321 123
Q ss_pred EEEEECCCCCceEEEEec-CC--------CceEEEEEcc-CCC---EEEEEcCCCeEEEEECCCCeeEEE
Q 011924 371 CRIWDLRNLSESVAVLKG-NL--------GAIRSIRYTS-DGR---YMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 371 v~iwd~~~~~~~~~~~~~-~~--------~~v~~l~~sp-dg~---~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
|.-.|+++ ++..=.++. |. ....-+.+.. +|+ .++.++.+|.+.++|.++|+.+..
T Consensus 416 lvALD~~T-Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 416 LVALDATT-GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEEEeCCC-CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 44455544 333322222 11 0111122322 664 788999999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.24 Score=49.86 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=72.8
Q ss_pred eEEECCC----CcEEEEEeCCCcEEEEECC-----CCceEEEeecC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 310 HSSQSPD----GKLLIIVGDNPDGLLVDSM-----TGKTIASLCGH-----LDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~----g~~l~~~~~dg~i~iwd~~-----~~~~~~~l~~h-----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
.++|.|- ...+++......|.+|-+. .++.+..-..+ .--...+.|||....|+.-.....-.+++
T Consensus 61 GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~s 140 (671)
T PF15390_consen 61 GLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPS 140 (671)
T ss_pred eeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeee
Confidence 6778773 3345556677889999875 23333222211 11234688999888887766655556778
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-CeEEEEECC
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-DFVHVYDVK 420 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g~i~iwd~~ 420 (475)
++.....++.--...+-|.|.+|.+||+.|++|-.. =.-+|||-.
T Consensus 141 V~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 141 VHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 776555555544567899999999999887766433 356788844
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0098 Score=63.06 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
.+..++.|+..|.|-..|+...-.+...-....++|++++|+.+|++++.|-.+|.|.+||+..+...+.+..|..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678889889999999986422222333335679999999999999999999999999999998888888777666555
Q ss_pred EE---EcCCCCeEEEEEecC
Q 011924 438 IS---FSPDTESLFIGVWDR 454 (475)
Q Consensus 438 l~---fspdg~~l~~~~~D~ 454 (475)
+. +..++..++++-.-|
T Consensus 178 vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCC
Confidence 44 334555555554333
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.17 Score=52.66 Aligned_cols=192 Identities=9% Similarity=0.045 Sum_probs=91.5
Q ss_pred EEEEcCcEEEEEecCc------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEEE
Q 011924 194 TLAVKDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDF 262 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~iw 262 (475)
++..++.+++.||.++ .+.++|..+......... .........+.+ ++. +++.|+.+ ..+..|
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~R~~~~~~~~----~~~-lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-IYPRKNPGVTVF----NNR-IYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-CcccccceEEEE----CCE-EEEEeCCCCCEecceEEEE
Confidence 4445788888888653 466677665443211111 111111122222 444 56777654 246667
Q ss_pred ECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC------CcEEEEECCC
Q 011924 263 DMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------PDGLLVDSMT 336 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------g~i~iwd~~~ 336 (475)
|..+.+....-..+.+.. + ..+..-++++.+.||.. ..+..||+.+
T Consensus 364 d~~~~~W~~~~~lp~~r~----~------------------------~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 364 KPGESKWREEPPLIFPRY----N------------------------PCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred cCCCCceeeCCCcCcCCc----c------------------------ceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 776654332211111111 0 11122367777777732 3578889876
Q ss_pred CceEEEeecCC-CCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEE
Q 011924 337 GKTIASLCGHL-DFSFASAWHPNGVTFATGNQD--------KTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 337 ~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~s~d--------g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
.+-. .+.... ......+...++...+.|+.+ ..+.+||..+ .+ .+..+.........+. -+++++
T Consensus 416 ~~W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~--~~~~iy 491 (534)
T PHA03098 416 NKWS-KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT-NKWTELSSLNFPRINASLCI--FNNKIY 491 (534)
T ss_pred Ceee-ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC-CceeeCCCCCcccccceEEE--ECCEEE
Confidence 5422 221111 111111222356666777542 2388888864 22 1111111111111222 267777
Q ss_pred EEEcCC-----CeEEEEECCCCe
Q 011924 406 ATAEPA-----DFVHVYDVKSGY 423 (475)
Q Consensus 406 a~~~~d-----g~i~iwd~~~~~ 423 (475)
+.|+.+ +.|.+||..+..
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCCE
Confidence 777654 468889987754
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.43 Score=49.69 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=67.3
Q ss_pred CCCcEEEEEeCCC-----cEEEEECCCCceEEEeec---CCCCeEEEEEecCCCEEEEEeCCC-----------------
Q 011924 315 PDGKLLIIVGDNP-----DGLLVDSMTGKTIASLCG---HLDFSFASAWHPNGVTFATGNQDK----------------- 369 (475)
Q Consensus 315 p~g~~l~~~~~dg-----~i~iwd~~~~~~~~~l~~---h~~~v~~~~~sp~g~~l~t~s~dg----------------- 369 (475)
-+|++.++||.++ .+..||..+.+- ..+.. .......++ -+|+..+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 3678888888653 477899876542 22221 111111222 2677777776542
Q ss_pred ------eEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCC------CeEEEEECCC-Ce-eE-EEEeccCC
Q 011924 370 ------TCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------DFVHVYDVKS-GY-EK-EQEIDFFG 433 (475)
Q Consensus 370 ------~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d------g~i~iwd~~~-~~-~~-~~~~~~~~ 433 (475)
+|..||..+. ...+..+....... ++ ..-+|++.+.|+.+ ..+..||..+ .+ .. ........
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4777887641 11122111111111 11 22357777777654 2467899886 32 21 11111112
Q ss_pred CeEEEEEcCCCCeEEEEEecC
Q 011924 434 EISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~ 454 (475)
....+.+ +|+..++|+.|+
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred cceeEEE--CCEEEEEeeecc
Confidence 2222223 677888898887
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=42.10 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=86.3
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF- 273 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~- 273 (475)
.+........++..|.|+ .-...+.... .......+.+..+.. +++|.+ +++++.-....-|+--...-..+.
T Consensus 110 ~~l~~~~~~l~~~~G~iy--~T~DgG~tW~-~~~~~~~gs~~~~~r--~~dG~~-vavs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 110 TALGDGSAELAGDRGAIY--RTTDGGKTWQ-AVVSETSGSINDITR--SSDGRY-VAVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp EEEETTEEEEEETT--EE--EESSTTSSEE-EEE-S----EEEEEE---TTS-E-EEEETTSSEEEEE-TT-SS-EEEE-
T ss_pred EEcCCCcEEEEcCCCcEE--EeCCCCCCee-EcccCCcceeEeEEE--CCCCcE-EEEECcccEEEEecCCCccceEEcc
Confidence 334444555555667654 3333343332 233344566777766 899985 666645445566765322122222
Q ss_pred eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEE-CCCCceEEE----eecCCC
Q 011924 274 RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD-SMTGKTIAS----LCGHLD 348 (475)
Q Consensus 274 ~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~----l~~h~~ 348 (475)
.....+. +|.|+|++.+.+++ ..|.|+.=+ ...+..... +..-.-
T Consensus 184 ~~~~riq-----------------------------~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 184 NSSRRIQ-----------------------------SMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp -SSS-EE-----------------------------EEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred Cccceeh-----------------------------hceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 2456777 99999998877755 778887776 222222111 111122
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
.+..++|.|++...|+|+. |++ +..... ++.-+.... -...+..+.|.+..+-++.| .+|.|.=|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~-G~l-~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGS-GTL-LVSTDG-GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEEST-T-E-EEESST-TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCC-ccE-EEeCCC-CccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 4789999998877776655 433 233333 443333332 23457788887665555554 57765444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.83 Score=46.16 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=88.5
Q ss_pred eeEEEEEE-cCcEEEEEe---cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC----CeEEEEEeCCCeEEE
Q 011924 190 TQVSTLAV-KDKLLVAGG---FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG----AVHFTASNNDCGVRD 261 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g----~~~l~s~s~dg~v~i 261 (475)
++|..++| ||+.++-.. .+|++++=| .. .-+.-..|..+.| .|-+ .. +++......|.|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~-------viGqFEhV~GlsW--~P~~~~~~pa-LLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SK-------VIGQFEHVHGLSW--APPCTADTPA-LLAVQHKKHVTV 86 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---cc-------Eeeccceeeeeee--cCcccCCCCc-eEEEeccceEEE
Confidence 58999999 887666442 234332211 11 1122234788888 7643 23 555568899999
Q ss_pred EECCC-----Ceeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 262 FDMGK-----YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 262 wd~~~-----~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
|-+.. .+.+.... ...+.-..|. ...|+|....|++-.....-.++++
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQ-------------------------GCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQ-------------------------GCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCC-------------------------cccccCCCceEEEEecCceeEeeee
Confidence 98742 22222111 1122222233 4569999998888766555556666
Q ss_pred CCC--ceEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECC
Q 011924 335 MTG--KTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIWDLR 377 (475)
Q Consensus 335 ~~~--~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g~v~iwd~~ 377 (475)
+.. +...-++ ..+.|.|.+|.+||+.|+.+-.. =.-.|||-.
T Consensus 142 ~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 532 2333444 56789999999999988776432 346788854
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.018 Score=50.71 Aligned_cols=105 Identities=9% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCcEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-Cc
Q 011924 316 DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GA 392 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-~~ 392 (475)
-+..+++|+.+|.|.+|.... |........-...|- .+.-..++.+..+++++|.||.|++.- .+.+-....|. .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC
Confidence 356789999999999998762 111111111112222 222223667899999999999999954 66666665565 56
Q ss_pred eEEEEEccCCCEEEEE--cCCCeEEEEECCC
Q 011924 393 IRSIRYTSDGRYMATA--EPADFVHVYDVKS 421 (475)
Q Consensus 393 v~~l~~spdg~~la~~--~~dg~i~iwd~~~ 421 (475)
+..+..+..+++|+.+ |.+..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777888888 8888888888764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.024 Score=37.02 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=26.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
+++|+|...++|.++.+|.|.++.+ +++.
T Consensus 16 ~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 16 CMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred EEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 9999999999999999999999998 4543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.24 Score=44.02 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=84.3
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE--CCCCeeee-----eeeccccEE
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--MGKYQLSK-----HFRFPWPVN 280 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd--~~~~~~~~-----~~~~~~~v~ 280 (475)
.|.++.|-....- ......-++-+.++| +.+.+.+.++-+.+-+|..|| +.++.... .++...+..
T Consensus 138 ~g~Ly~~~~~h~v-----~~i~~~v~IsNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e 210 (310)
T KOG4499|consen 138 GGELYSWLAGHQV-----ELIWNCVGISNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE 210 (310)
T ss_pred ccEEEEeccCCCc-----eeeehhccCCccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC
Confidence 3666666654321 222233456688999 777777788888999998887 66665432 111111100
Q ss_pred -eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec-C
Q 011924 281 -VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-N 358 (475)
Q Consensus 281 -~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~ 358 (475)
.-|+ .+++..+|++.+++-..++|...|..+|+.+..+.-....++|+||-- +
T Consensus 211 ~~~PD-------------------------Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 211 SLEPD-------------------------GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred CCCCC-------------------------cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 1112 556777899999998999999999999999999998899999999953 3
Q ss_pred CCEEEE
Q 011924 359 GVTFAT 364 (475)
Q Consensus 359 g~~l~t 364 (475)
-..|++
T Consensus 266 ~d~~yv 271 (310)
T KOG4499|consen 266 LDILYV 271 (310)
T ss_pred ccEEEE
Confidence 334443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.56 Score=43.27 Aligned_cols=143 Identities=13% Similarity=0.182 Sum_probs=95.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceE-----
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV----- 383 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~----- 383 (475)
++.|+|+.+.|.+..+.+.-.|+=...|+.+.++.-. -...-.+.+.-++++.++--.++++.++.+......+
T Consensus 90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~ 169 (316)
T COG3204 90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ 169 (316)
T ss_pred ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce
Confidence 9999999999999988888777776789988877521 1234567888888888888889999888875422211
Q ss_pred -EEEe---cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee---EEEEecc-------CCCeEEEEEcCCCCeEEE
Q 011924 384 -AVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---KEQEIDF-------FGEISGISFSPDTESLFI 449 (475)
Q Consensus 384 -~~~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~-------~~~i~~l~fspdg~~l~~ 449 (475)
..+. ..+...-.++|+|....|..+-..+=+.||.+..+.. ......+ -..|+++.|.+....|++
T Consensus 170 ~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 170 KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 1111 1134567899999887777777666677777653321 1111111 135788899886666655
Q ss_pred EEe
Q 011924 450 GVW 452 (475)
Q Consensus 450 ~~~ 452 (475)
-|.
T Consensus 250 LS~ 252 (316)
T COG3204 250 LSD 252 (316)
T ss_pred Eec
Confidence 443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.28 Score=51.36 Aligned_cols=176 Identities=10% Similarity=0.050 Sum_probs=96.7
Q ss_pred eecccceeEEecC-CCeEEEecCCeEEEEecCCCCceE----EEeccCCCCCCCCCCCCccccccceeEEEEEE----cC
Q 011924 129 LHFQLRNLVWATS-KHDVYLMSHFSVIHWSSLTSSRSQ----VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KD 199 (475)
Q Consensus 129 ~h~~lr~l~~~~~-~~~v~~~~~~~v~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~ 199 (475)
.+.+.||-+.+.. .+.+|++..+.|.+|....-.... .+.+.-.........+.......++.|.-|.+ ..
T Consensus 35 ~~~gfKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 35 QGLGFKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred eccccccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 3444666666655 677788889999999864322211 11111000000000111111113455666655 67
Q ss_pred cEEEEEecCceEEEEeCCC-------C----CceE-----EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 200 KLLVAGGFQGELICKHLDR-------P----GVSF-----CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~-------~----~~~~-----~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|+++..+|.|.+|.+.. . .... ...........++.++++ +.....++|++++...|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh-~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIH-DYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEE-ecCcceEEEEecCCceEEEEE
Confidence 8899999999999996621 0 0000 001122234568999994 224445688888888888886
Q ss_pred CCCC--ee--eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-----Cc-EEEEEeCCCcEEEEE
Q 011924 264 MGKY--QL--SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-----GK-LLIIVGDNPDGLLVD 333 (475)
Q Consensus 264 ~~~~--~~--~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-----g~-~l~~~~~dg~i~iwd 333 (475)
.... +. .....+...|- +++|-++ |. .|++++-.|.+.+|+
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP-----------------------------~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIP-----------------------------NVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EeccccccccccccccccCCC-----------------------------eeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 5331 11 11112223333 7777653 32 777888899999888
Q ss_pred C
Q 011924 334 S 334 (475)
Q Consensus 334 ~ 334 (475)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.2 Score=40.93 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=87.5
Q ss_pred CCCCCeEEEEEeCCCe-EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE
Q 011924 243 SPSGAVHFTASNNDCG-VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI 321 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~ 321 (475)
+|.-..-++.+-.-|+ ..++|....+....+.....-.|-. +=.|||+|.+|.
T Consensus 76 ~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyG--------------------------HGvfs~dG~~LY 129 (366)
T COG3490 76 HPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYG--------------------------HGVFSPDGRLLY 129 (366)
T ss_pred CCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeec--------------------------ccccCCCCcEEE
Confidence 6655444555544444 5678887776655554322222111 347999999998
Q ss_pred EEeC-----CCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEEEEeCC------------------CeEEEEECC
Q 011924 322 IVGD-----NPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQD------------------KTCRIWDLR 377 (475)
Q Consensus 322 ~~~~-----dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d------------------g~v~iwd~~ 377 (475)
..-. .|.|-|||.+.+ +.+..+..|.-....+.|.+||++++.++.. -.+.+.|..
T Consensus 130 ATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred eecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 7643 477889998854 4566788888788899999999999987531 123333332
Q ss_pred CCCceEEE--Ee--cCCCceEEEEEccCCCEEEEEc
Q 011924 378 NLSESVAV--LK--GNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 378 ~~~~~~~~--~~--~~~~~v~~l~~spdg~~la~~~ 409 (475)
+ +..+.. +. .+.-.|+.++..+||+.++.+-
T Consensus 210 t-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 210 T-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred c-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 2 222221 22 2345788899999998766543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.92 Score=47.31 Aligned_cols=189 Identities=17% Similarity=0.137 Sum_probs=96.8
Q ss_pred EEEcCcEEEEEecC-c-----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe-----EEEEE
Q 011924 195 LAVKDKLLVAGGFQ-G-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG-----VRDFD 263 (475)
Q Consensus 195 l~~~~~~lvsg~~d-g-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~-----v~iwd 263 (475)
...++.+.++||.+ | .+.+||............ ...........+ +|. +.++|+.||. |..||
T Consensus 329 ~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-~~~R~~~~v~~l----~g~-iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 329 AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-NTKRSDFGVAVL----DGK-LYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred EEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc-cCccccceeEEE----CCE-EEEEeccccccccccEEEec
Confidence 33388899999999 3 455666665553321111 111111222222 454 5888888864 55666
Q ss_pred CCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeE-EECCCCcEEEEEeCC------CcEEEEECCC
Q 011924 264 MGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHS-SQSPDGKLLIIVGDN------PDGLLVDSMT 336 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~-~~sp~g~~l~~~~~d------g~i~iwd~~~ 336 (475)
..+.+....-....+.. .. ...-+|.+.++||.+ .++..||..+
T Consensus 403 p~~~~W~~va~m~~~r~-----------------------------~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRS-----------------------------GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred CCCCcccccCCCCccee-----------------------------eeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 65543322211111111 11 223378888888754 3467888876
Q ss_pred CceEE--EeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEE
Q 011924 337 GKTIA--SLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 337 ~~~~~--~l~~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
++-.. .+..-..... ++ .-++.+.+.|+.|+ +|..||.++ .+ .+..+......+..+. -+++..++
T Consensus 454 ~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~-~~W~~v~~m~~~rs~~g~~~--~~~~ly~v 528 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPET-NQWTMVAPMTSPRSAVGVVV--LGGKLYAV 528 (571)
T ss_pred CceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCC-CceeEcccCccccccccEEE--ECCEEEEE
Confidence 65321 1211111111 22 23677888888776 378888865 22 2221222222222222 25667778
Q ss_pred EcCCC-----eEEEEECCCCe
Q 011924 408 AEPAD-----FVHVYDVKSGY 423 (475)
Q Consensus 408 ~~~dg-----~i~iwd~~~~~ 423 (475)
|+.++ +|..||..+.+
T Consensus 529 GG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ecccCccccceeEEcCCCCCc
Confidence 87765 57778876654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=54.88 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=91.0
Q ss_pred eEEECCCCcEEEEEeCC--CcEEEEECCCCce-----EEEeec------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEE
Q 011924 310 HSSQSPDGKLLIIVGDN--PDGLLVDSMTGKT-----IASLCG------HLDFSFASAWHPN-GVTFATGNQDKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d--g~i~iwd~~~~~~-----~~~l~~------h~~~v~~~~~sp~-g~~l~t~s~dg~v~iwd 375 (475)
.+..++|+...++.... -.|..||+++-.. ..-|.. ......++.|.|. ....|....|+.|++.-
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~ 184 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS 184 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence 56677787776665433 3678899874211 111221 2234567889984 33456677899999988
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc----CCCeEEEEEcCCCCeEEE
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF----FGEISGISFSPDTESLFI 449 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~fspdg~~l~~ 449 (475)
+......+..+. ....+++++|+|.|+.++.|-..|++.-|-. ++.....+... ...|.+++|-..-.+|++
T Consensus 185 ~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 185 TKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 855333344333 3456889999999999999999999998874 34443443321 367999999877666664
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.04 Score=35.97 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=29.7
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
...|..++|+|...+||.++.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346899999999999999999999999998 5543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.6 Score=41.53 Aligned_cols=149 Identities=16% Similarity=0.241 Sum_probs=74.7
Q ss_pred EECCCCcEEEEEe------CCCcEEEEECCCCceEEEeecC---CCCeEEEEEecCCCEEEEEeC---------------
Q 011924 312 SQSPDGKLLIIVG------DNPDGLLVDSMTGKTIASLCGH---LDFSFASAWHPNGVTFATGNQ--------------- 367 (475)
Q Consensus 312 ~~sp~g~~l~~~~------~dg~i~iwd~~~~~~~~~l~~h---~~~v~~~~~sp~g~~l~t~s~--------------- 367 (475)
..-|+|+.++++- ..|.+.++|-.+.......+.. ...-+.+-|.|..+.++|+..
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 3457888887752 2356888888877777766542 345678889998899998753
Q ss_pred -----CCeEEEEECCCCCceEEEEecCC--CceEEEEEccC--CC--EEEEEcCCCeEEEEECCCCe----eEEEEecc-
Q 011924 368 -----DKTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSD--GR--YMATAEPADFVHVYDVKSGY----EKEQEIDF- 431 (475)
Q Consensus 368 -----dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~spd--g~--~la~~~~dg~i~iwd~~~~~----~~~~~~~~- 431 (475)
..++.+||+.. .+.++++.-.. ..+..++|..+ .. ++.++-.....++|....+. .+.++...
T Consensus 216 ~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHH-S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hcccccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 34799999977 78888877543 23557777543 43 33334333344444434443 12222211
Q ss_pred ----------------CCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 432 ----------------FGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 432 ----------------~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
.+-|+.|..|.|.++|.++.|=. |.+.+|.
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~--GdvrqYD 340 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH--GDVRQYD 340 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTT--TEEEEEE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccC--CcEEEEe
Confidence 23479999999999999998843 4555553
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.47 E-value=4.6 Score=43.47 Aligned_cols=264 Identities=12% Similarity=0.102 Sum_probs=135.4
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE--eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS--RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
|.-..+ +..+|.++..||.+.-+.++.......- +...+ ..++.--.| +..++..++++ .|+-.-+|.-+..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG-t~P~~Lr~f--~sk~~t~vfa~-sdrP~viY~~n~k 661 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG-TQPISLRTF--SSKSRTAVFAL-SDRPTVIYSSNGK 661 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC-CCCcEEEEE--eeCCceEEEEe-CCCCEEEEecCCc
Confidence 444444 6789999999999988877654433211 11122 223333333 43444334444 4555556654332
Q ss_pred eeeeeee-----ccccEE--------eccCCceEEEEEEeeccc--ceEEEEeeeeeeEEECCCCcEEEEEeCC------
Q 011924 268 QLSKHFR-----FPWPVN--------VSSSYCIILLCRLLNFMT--EKVIICLLCLQHSSQSPDGKLLIIVGDN------ 326 (475)
Q Consensus 268 ~~~~~~~-----~~~~v~--------~s~~~~~l~~~~v~d~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d------ 326 (475)
-+...+. +..+.+ .+.++..+....+-++.. -+.++.....+.+++.+...++++.+..
T Consensus 662 Lv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 662 LVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred EEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchh
Confidence 1111111 111111 111111111111111111 1112222244466776655555544321
Q ss_pred --------CcEEEEECCCCceEEEeecC-C---CCeEEEEEecC-CCEEEEEe----------CCCeEEEEECCCCCceE
Q 011924 327 --------PDGLLVDSMTGKTIASLCGH-L---DFSFASAWHPN-GVTFATGN----------QDKTCRIWDLRNLSESV 383 (475)
Q Consensus 327 --------g~i~iwd~~~~~~~~~l~~h-~---~~v~~~~~sp~-g~~l~t~s----------~dg~v~iwd~~~~~~~~ 383 (475)
..++++|-++-+.++..+-. . -.+.++.|+.| +.++++|. ..|.|.|+.+.. ...+
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L 820 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSL 820 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCce
Confidence 13556665554443322211 1 23455568776 66777764 246777777755 2323
Q ss_pred EEEecC--CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 384 AVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 384 ~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
+....+ .+++.++.. -+|++||.- +..|++|+..+.+.++....+..++..+...-.|..+++|--=+++ .+++
T Consensus 821 ~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si-tll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI-TLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE-EEEE
Confidence 332221 244444432 267777654 4589999999988888777888899999999999999988544443 4455
Q ss_pred EEe
Q 011924 462 YGR 464 (475)
Q Consensus 462 ~~~ 464 (475)
|.+
T Consensus 897 y~~ 899 (1096)
T KOG1897|consen 897 YKG 899 (1096)
T ss_pred Eec
Confidence 543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.056 Score=47.69 Aligned_cols=100 Identities=9% Similarity=0.053 Sum_probs=68.8
Q ss_pred EEEEeCCCeEEEEECCCCeee-eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeee-EEECCCCcEEEEEeCC
Q 011924 250 FTASNNDCGVRDFDMGKYQLS-KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH-SSQSPDGKLLIIVGDN 326 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~-~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~-~~~sp~g~~l~~~~~d 326 (475)
+++|+.+|.|.+|........ ..+. ...++. + +..-.++.+..+++.+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~-----------------------------~~Ip~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID-----------------------------LGIPNGRDSSLGCVGAQD 123 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccce-----------------------------eccccccccceeEEeccC
Confidence 889999999999988632211 1111 122222 2 2223356678889999
Q ss_pred CcEEEEECCCCceEEEeecCC-CCeEEEEEecCCCEEEEE--eCCCeEEEEECCC
Q 011924 327 PDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATG--NQDKTCRIWDLRN 378 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~--s~dg~v~iwd~~~ 378 (475)
|.|+.|++.-++.+...-.|. .++.....+..+..++.+ |.|..++.|++..
T Consensus 124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 999999999888887777777 556666666667777777 7788888888754
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=5.1 Score=42.98 Aligned_cols=193 Identities=12% Similarity=-0.010 Sum_probs=97.8
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
+..+.+ ||+|+.++++...+| .|++.|+.++..+...- ...-. .
T Consensus 129 l~~~~~--Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~-----------------------------~ 176 (686)
T PRK10115 129 LGGMAI--TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEP-----------------------------S 176 (686)
T ss_pred EeEEEE--CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcce-----------------------------E
Confidence 445566 999997555544444 57788887775321111 11112 6
Q ss_pred EEECCCCcEEEEEeCC------CcEEEEECCCC--ceEEEeecCCCCeEEEEEec-CCCEEEEEeC---CCeEEEEECCC
Q 011924 311 SSQSPDGKLLIIVGDN------PDGLLVDSMTG--KTIASLCGHLDFSFASAWHP-NGVTFATGNQ---DKTCRIWDLRN 378 (475)
Q Consensus 311 ~~~sp~g~~l~~~~~d------g~i~iwd~~~~--~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~---dg~v~iwd~~~ 378 (475)
++|+++++.|+.+..+ ..|+.+++.++ +....+........-..+.+ ++++++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 7899998877666432 36778888877 33444443333333233444 7777665443 45688888533
Q ss_pred C-CceEEEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEEECCCCeeEEEEecc-C-CCeEEEEEcCCCCeEEEEEe
Q 011924 379 L-SESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEIDF-F-GEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 379 ~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~l~fspdg~~l~~~~~ 452 (475)
. ..+...+....+....+. +..+.+++.... ...|...++.+......+..+ . ..|..+.++ +++|+....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~ 333 (686)
T PRK10115 257 ADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER 333 (686)
T ss_pred CCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE
Confidence 1 232223332223332322 222333332221 223444455421122334444 2 367777777 446665555
Q ss_pred cCCcceEEEE
Q 011924 453 DRTYGSLLEY 462 (475)
Q Consensus 453 D~~~~~ll~~ 462 (475)
++....+..+
T Consensus 334 ~~g~~~l~~~ 343 (686)
T PRK10115 334 QRGLTSLRQI 343 (686)
T ss_pred eCCEEEEEEE
Confidence 4444444333
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.39 Score=47.44 Aligned_cols=144 Identities=13% Similarity=0.187 Sum_probs=91.4
Q ss_pred CCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC------
Q 011924 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG------ 317 (475)
Q Consensus 244 ~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g------ 317 (475)
.+.+.++..++.-..++-.|++.|+.+........+ -+.+.|..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv------------------------------vVqy~p~~kf~qmt 526 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV------------------------------VVQYNPYFKFQQMT 526 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc------------------------------eeecCCchhHHhcC
Confidence 344555556667777888888888888776633222 12444432
Q ss_pred -cEEEEEeCCCcEEEEECC-CCceEEEeecCCCCeEEEEEe----cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC
Q 011924 318 -KLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWH----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 318 -~~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~s----p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
..-++|-.+..|.-.|.+ .|..+..-+ ..+++..-.|+ ....++|.|+..|-||+||--. .+....+++...
T Consensus 527 ~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~ 604 (776)
T COG5167 527 DEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGD 604 (776)
T ss_pred ccceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCccccc
Confidence 122344455667777776 343333222 23333333333 3556899999999999999643 455566677777
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
+|..+..+.+|+++++.+.. .+.+-|++
T Consensus 605 aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 605 AIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 89999999999988877754 57777764
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.20 E-value=5.6 Score=42.87 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCC--C--
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPD--T-- 444 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspd--g-- 444 (475)
.||+++-. ..+..+.... .++..+.+.+...++.|+.++.+...++..+....+. .....+|.|+.++|- +
T Consensus 471 ~iRl~ss~---~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA---GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch---hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC
Confidence 47777653 2344444333 4444445555556777777777777776655422222 224578999999984 2
Q ss_pred --CeEEEEEecCCcceEE
Q 011924 445 --ESLFIGVWDRTYGSLL 460 (475)
Q Consensus 445 --~~l~~~~~D~~~~~ll 460 (475)
+++++|.|+..+..+.
T Consensus 547 ~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILT 564 (1096)
T ss_pred cceEEEEEeecceEEEEE
Confidence 3789999987765444
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.3 Score=40.08 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=60.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
++.+.|+++.++++ ..|.+++-....|........+ ...+.++.+.|++..++++ .+|.+. ..... ++.-..
T Consensus 219 ~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~-G~tW~~ 294 (334)
T PRK13684 219 SMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG-GKTWEK 294 (334)
T ss_pred eeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC-CCCCeE
Confidence 88899999877765 5576543334455443322211 2347889999988766655 566544 33322 333222
Q ss_pred Ee---cCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 386 LK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 386 ~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.. .-......+.|..+++.+++ +..|.|.-|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 295 DPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 22 22235777888777766554 4577777665
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.94 Score=47.08 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=64.1
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCC-Cc
Q 011924 316 DGKLLIIVGDN-----PDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRNL-SE 381 (475)
Q Consensus 316 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~d------g~v~iwd~~~~-~~ 381 (475)
++++.+.||.+ ..+..||..+.+-. .... +...-.+++ .-+++..+.|+.. ..+..||..+. ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 67788888764 34677887765422 2211 111111222 2366777777632 35888998641 11
Q ss_pred eEEEEecCCCceEEEEEccCCCEEEEEcCC--------CeEEEEECCCCeeEEEEe-cc-CCCeEEEEEcCCCCeEEEEE
Q 011924 382 SVAVLKGNLGAIRSIRYTSDGRYMATAEPA--------DFVHVYDVKSGYEKEQEI-DF-FGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~spdg~~la~~~~d--------g~i~iwd~~~~~~~~~~~-~~-~~~i~~l~fspdg~~l~~~~ 451 (475)
.+..+....... + +...++++.+.|+.+ ..+.+||..+.+-...-. .. ......+.+ +++.++.|+
T Consensus 420 ~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 495 (534)
T PHA03098 420 KGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG 495 (534)
T ss_pred ecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence 111111111111 1 222356666777643 238899988764332111 11 111222222 666777776
Q ss_pred ecC
Q 011924 452 WDR 454 (475)
Q Consensus 452 ~D~ 454 (475)
.++
T Consensus 496 ~~~ 498 (534)
T PHA03098 496 DKY 498 (534)
T ss_pred CcC
Confidence 653
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.1 Score=39.30 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=93.7
Q ss_pred eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-----cEEEEE-eCCCcEEE
Q 011924 258 GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-----KLLIIV-GDNPDGLL 331 (475)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-----~~l~~~-~~dg~i~i 331 (475)
.|-+||+.+.+.++.+..+..+.- .+..+. .+.+.... .++..+ ...+.|.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~--~~s~ln--------------------dl~VD~~~~~~~~~~aYItD~~~~glIV 92 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP--PDSFLN--------------------DLVVDVRDGNCDDGFAYITDSGGPGLIV 92 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEE--------------------EEEEECTTTTS-SEEEEEEETTTCEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcc--cccccc--------------------eEEEEccCCCCcceEEEEeCCCcCcEEE
Confidence 577789999998888876544431 111111 44444411 233333 23457999
Q ss_pred EECCCCceEEEeecC-------------------CCCeEEEEEec---CCCEEEEEeCCCeEEEEECC-----CCC----
Q 011924 332 VDSMTGKTIASLCGH-------------------LDFSFASAWHP---NGVTFATGNQDKTCRIWDLR-----NLS---- 380 (475)
Q Consensus 332 wd~~~~~~~~~l~~h-------------------~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~-----~~~---- 380 (475)
+|+.+++..+.+..+ .+.+..++.+| +++.|+-....+ -++|-+. +..
T Consensus 93 ~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~ 171 (287)
T PF03022_consen 93 YDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDA 171 (287)
T ss_dssp EETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HH
T ss_pred EEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCcccccc
Confidence 999998876655432 12366667766 666777665443 2333321 100
Q ss_pred ----ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe---eEE-EEecc--CCCeEEEEEcC--CCCeEE
Q 011924 381 ----ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY---EKE-QEIDF--FGEISGISFSP--DTESLF 448 (475)
Q Consensus 381 ----~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~---~~~-~~~~~--~~~i~~l~fsp--dg~~l~ 448 (475)
..++.+-...+....++++++|.+.++--..+.|..|+..+.. ... ..... -..+.++.+.+ +|...+
T Consensus 172 ~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 172 QALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp H-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred ccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence 1123332222355688999999988888889999999987622 111 11222 35789999999 776555
Q ss_pred EE
Q 011924 449 IG 450 (475)
Q Consensus 449 ~~ 450 (475)
.+
T Consensus 252 ~s 253 (287)
T PF03022_consen 252 LS 253 (287)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.06 E-value=2 Score=41.56 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=76.4
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce---EEEee----cCCCCeEEEEEecC----CCEEEEEeCC--------Ce
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASLC----GHLDFSFASAWHPN----GVTFATGNQD--------KT 370 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~l~----~h~~~v~~~~~sp~----g~~l~t~s~d--------g~ 370 (475)
.|+|.|+|+++++ ...|.|++++ ..+.. +..+. ........++++|+ +.+.++.+.. ..
T Consensus 6 ~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 8899999987665 5699999999 44443 33331 23456789999994 4433333321 13
Q ss_pred EEEEECCCCC------c-eEEEEec---CCCceEEEEEccCCCEEEEEcCC-------------CeEEEEECCCCee---
Q 011924 371 CRIWDLRNLS------E-SVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-------------DFVHVYDVKSGYE--- 424 (475)
Q Consensus 371 v~iwd~~~~~------~-~~~~~~~---~~~~v~~l~~spdg~~la~~~~d-------------g~i~iwd~~~~~~--- 424 (475)
|.-|...... + .+..+.. .......|+|.|||.+.++.+.. |.|.=.+.. |..
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~d 162 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPAD 162 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-TT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCCC
Confidence 4444443210 1 1122222 22345679999999755554422 223333322 210
Q ss_pred ----------EEEEeccCCCeEEEEEcCCCCeEEEE-EecCCcceEEEEEeecceeee
Q 011924 425 ----------KEQEIDFFGEISGISFSPDTESLFIG-VWDRTYGSLLEYGRCRNYSYL 471 (475)
Q Consensus 425 ----------~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~~~~ll~~~~~~~~~~l 471 (475)
...+..-.....+++|+|....|+++ ......-++-....+.++.|-
T Consensus 163 nP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP 220 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP 220 (331)
T ss_dssp STTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred CccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence 01111112345689999993344444 222233455555566666543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.6 Score=44.74 Aligned_cols=186 Identities=10% Similarity=0.014 Sum_probs=88.0
Q ss_pred EcCcEEEEEecCc-----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--CeEEEEECCCCee
Q 011924 197 VKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQL 269 (475)
Q Consensus 197 ~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g~v~iwd~~~~~~ 269 (475)
.++.++++||.++ .+..||............ .........+.+ +|. +.+.|+.+ .++..|+..+.+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m-~~~r~~~~~v~~----~~~-iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM-NSPRLYASGVPA----NNK-LYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC-CchhhcceEEEE----CCE-EEEECCcCCCCceEEEECCCCeE
Confidence 3667778888653 455677665443211111 111111122222 454 46676643 3577777665543
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC---cEEEEECCCCceEEEeecC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP---DGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg---~i~iwd~~~~~~~~~l~~h 346 (475)
...-..+.+... .....-+|++.++||.++ .+..||.++.+-. ....-
T Consensus 344 ~~~~~l~~~r~~----------------------------~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~-~~~~m 394 (480)
T PHA02790 344 VNMPSLLKPRCN----------------------------PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ-FGPST 394 (480)
T ss_pred EECCCCCCCCcc----------------------------cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE-eCCCC
Confidence 322221211110 112233678888887543 4668887765422 11110
Q ss_pred C-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcCC-----CeEEEEE
Q 011924 347 L-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYD 418 (475)
Q Consensus 347 ~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----g~i~iwd 418 (475)
. ......+..-+++..+.| |.+.+||.++ .+ .+..+.........+. -+|++.++|+.+ ..|..||
T Consensus 395 ~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~-~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVG---RNAEFYCESS-NTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CCccccceEEEECCEEEEEC---CceEEecCCC-CcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEE
Confidence 0 111111223366666666 3577888864 22 1222221112222222 367777777754 3577777
Q ss_pred CCCCe
Q 011924 419 VKSGY 423 (475)
Q Consensus 419 ~~~~~ 423 (475)
..+++
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 76653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.86 E-value=4.6 Score=40.09 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=55.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE----ccC----------------CCEE-EE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY----TSD----------------GRYM-AT 407 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----spd----------------g~~l-a~ 407 (475)
.+.+++.+|++++.|+...=|.|.++|+.+ ...++.+++...+= +.| .+. ..+| +-
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 467899999999988887778999999976 77788888765431 111 111 1133 34
Q ss_pred EcCCCeEEEEECCCCeeEEEEe
Q 011924 408 AEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
+-.-|.|-||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5668899999999988776654
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.61 E-value=4.8 Score=39.24 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=89.0
Q ss_pred ceEEEEeCCCCCceEEEeee-----cCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECC---C----Ceeeeeeec
Q 011924 209 GELICKHLDRPGVSFCSRTT-----YDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMG---K----YQLSKHFRF 275 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~---~----~~~~~~~~~ 275 (475)
..|++|.++........... ......+..++++.++ +|..+++....+|.+..|.+. . .++++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 47999988753332211110 1112346788888776 567667778899999888763 2 246778877
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-----CceEEEeec--CCC
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG--HLD 348 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~l~~--h~~ 348 (475)
...+. .+........|.++-.+.-|.-|+... ++.+....+ ...
T Consensus 207 ~sQ~E-----------------------------GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~a 257 (381)
T PF02333_consen 207 GSQPE-----------------------------GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVA 257 (381)
T ss_dssp SS-EE-----------------------------EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S
T ss_pred CCcce-----------------------------EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccccc
Confidence 77777 888888888888898888888888762 222322222 345
Q ss_pred CeEEEEEec--CC-CEEEEEeC-CCeEEEEECCCCCceEEEE
Q 011924 349 FSFASAWHP--NG-VTFATGNQ-DKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 349 ~v~~~~~sp--~g-~~l~t~s~-dg~v~iwd~~~~~~~~~~~ 386 (475)
.+-.+++-. ++ .||+.+++ +++..||+.+.....+..+
T Consensus 258 DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 258 DVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp -EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 677777743 33 35555555 7799999987544444444
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.1 Score=47.89 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=54.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECC----------CCce---EEEe--------ecCCCCeEEEEEecC---CCEEEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSM----------TGKT---IASL--------CGHLDFSFASAWHPN---GVTFATG 365 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~----------~~~~---~~~l--------~~h~~~v~~~~~sp~---g~~l~t~ 365 (475)
.+.+||+|++|+..|..| |.|..+. .|+. .+++ ..+...|..+.|||. +..|+.-
T Consensus 89 ~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL 167 (717)
T PF10168_consen 89 QISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL 167 (717)
T ss_pred EEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence 899999999999998876 4444432 1111 1111 124457889999994 5889999
Q ss_pred eCCCeEEEEECCCCCceEEEEe
Q 011924 366 NQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
..|+++|+||+.....+..++.
T Consensus 168 tsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 168 TSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred ecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999987555555443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.3 Score=47.25 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=53.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECC-CCC--------c---eEEEE--------ecCCCceEEEEEccC---CCEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLR-NLS--------E---SVAVL--------KGNLGAIRSIRYTSD---GRYM 405 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~-~~~--------~---~~~~~--------~~~~~~v~~l~~spd---g~~l 405 (475)
.|..+.++|+|+++|..+..|. .|-.+- ..+ + ..+++ ......|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5778899999999999888664 443332 111 1 11111 123457889999996 4799
Q ss_pred EEEcCCCeEEEEECCCCeeEE
Q 011924 406 ATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~~~~ 426 (475)
++-..|+++++||+.....+.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred EEEecCCEEEEEecCCCCCCe
Confidence 999999999999997654333
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=94.26 E-value=9.8 Score=41.30 Aligned_cols=74 Identities=20% Similarity=0.032 Sum_probs=53.3
Q ss_pred CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE----e-----------c----cCCCeEEEEEcCCCCeEEEEE
Q 011924 391 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE----I-----------D----FFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 391 ~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~----~-----------~----~~~~i~~l~fspdg~~l~~~~ 451 (475)
+.|.++....-+.+++.+-.||+|.++|-.+.+.+... . + ....+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777889999999999999998776433322 0 0 011344688999999999999
Q ss_pred ecCCcceEEEEEe
Q 011924 452 WDRTYGSLLEYGR 464 (475)
Q Consensus 452 ~D~~~~~ll~~~~ 464 (475)
.|+.+..++...+
T Consensus 340 ~~~~~~~~~~~~~ 352 (753)
T PF11635_consen 340 EDGKTKKLLYMMR 352 (753)
T ss_pred cCCCceeeEEeec
Confidence 9998875555443
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.2 Score=43.29 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECC-----CC--
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLR-----NL-- 379 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~-----~~-- 379 (475)
-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.. +|+.+++.+..+.|.+|--. +.
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 34445555555555556689999998877443222 3467899999964 88888888888999988531 11
Q ss_pred -CceEEEE--ecCC-CceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 380 -SESVAVL--KGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 380 -~~~~~~~--~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..+++.+ ..+. .+|....|.++|.+++.++ +.+.|+|-
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1233333 2222 4788999999997655443 46888873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.96 Score=49.09 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=67.2
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
..++.| +|.-....+.+..|+.|++..+.. .+.+..+......+ |++|
T Consensus 158 ~~~~~w--nP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~T-----------------------------av~W 206 (1405)
T KOG3630|consen 158 QLKNVW--NPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQT-----------------------------AVLW 206 (1405)
T ss_pred cccccc--cCCccchhhhhccccchhhhhhhhhhhhhcccCccccee-----------------------------eEEe
Confidence 344555 776655577778899999987743 23333445555666 9999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCceEEEeec----CCCCeEEEEEecCCCEEEE
Q 011924 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG----HLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 314 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~----h~~~v~~~~~sp~g~~l~t 364 (475)
+|.|+.+++|-..|++.-|-.. +.....+.+ ....|.+++|-..-.++++
T Consensus 207 SprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 207 SPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 9999999999999999888753 443334432 1367899999765555443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.8 Score=43.67 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC--CCCc
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS--PDGK 318 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s--p~g~ 318 (475)
|.-++. .++.+....+.|||...+.+-..-. ....|. .+.|. |+|.
T Consensus 38 ss~~k~-a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~-----------------------------dLDWtst~d~q 87 (631)
T PF12234_consen 38 SSIKKI-AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR-----------------------------DLDWTSTPDGQ 87 (631)
T ss_pred cccCcE-EEEECCCCEEEEEEcCCcEEEEeeeecCCCcee-----------------------------eceeeecCCCC
Confidence 555553 5555556689999998877544333 366777 77775 6899
Q ss_pred EEEEEeCCCcEEEEECC-----CC----ceEEEe--ecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 319 LLIIVGDNPDGLLVDSM-----TG----KTIASL--CGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 319 ~l~~~~~dg~i~iwd~~-----~~----~~~~~l--~~h~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.+++.|-...|.++--. .. .++..+ ..|+ .+|.+..|.++|.+++.++ ..+.|+|-.
T Consensus 88 siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 99998888899988542 11 123322 3344 5789999999997666543 368888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.91 E-value=6.6 Score=38.08 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=17.3
Q ss_pred EEEcCcEEEEEecC-------ceEEEEeCCCCCc
Q 011924 195 LAVKDKLLVAGGFQ-------GELICKHLDRPGV 221 (475)
Q Consensus 195 l~~~~~~lvsg~~d-------g~i~vw~~~~~~~ 221 (475)
...++.+++.||.+ ..+.++|+.....
T Consensus 29 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 62 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTW 62 (341)
T ss_pred EEECCEEEEECCccCCCCceeCcEEEEECCCCEE
Confidence 34477788888863 2567777766543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.55 E-value=8.1 Score=37.94 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=36.3
Q ss_pred eEEECCCCcEEEEEeCC-------------------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 310 HSSQSPDGKLLIIVGDN-------------------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d-------------------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
.++|.|+|.+.++.+.. +.|.-++..+++. ..+.........++|+|+|+++++-+.+
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 77899999877665521 3455555544443 3333223446789999999988775543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.43 Score=30.23 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCeEEEEECCC
Q 011924 348 DFSFASAWHPNG---VTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 348 ~~v~~~~~sp~g---~~l~t~s~dg~v~iwd~~~ 378 (475)
+.++++.|+|.+ .+|+.+-.-+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999844 4888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.35 E-value=8.3 Score=37.44 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=20.7
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+.+||..+.+-.....-....-...+..-+++.+++|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888765432211111111122233445777888887654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.07 E-value=12 Score=38.29 Aligned_cols=105 Identities=6% Similarity=-0.101 Sum_probs=52.8
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCceEEEeecC----CCC-eEEEEEecCCCEEEEEeCC----CeEEEEECCCCCc
Q 011924 316 DGKLLIIVGDN-----PDGLLVDSMTGKTIASLCGH----LDF-SFASAWHPNGVTFATGNQD----KTCRIWDLRNLSE 381 (475)
Q Consensus 316 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~l~~h----~~~-v~~~~~sp~g~~l~t~s~d----g~v~iwd~~~~~~ 381 (475)
++++.+.|+.+ ..+..||+.+.+-. .+... ... -.+++ .-++++++.++.+ ..+.+||+.+ .+
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t-~~ 354 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQ-DK 354 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCCccCceEEEECCC-CE
Confidence 56677777654 34677887765422 22110 001 11122 2256777777655 3588999865 32
Q ss_pred eEEEEec----CCCceEEEEEccCCCEEEEEcCC--------------CeEEEEECCCCee
Q 011924 382 SVAVLKG----NLGAIRSIRYTSDGRYMATAEPA--------------DFVHVYDVKSGYE 424 (475)
Q Consensus 382 ~~~~~~~----~~~~v~~l~~spdg~~la~~~~d--------------g~i~iwd~~~~~~ 424 (475)
- ..+.. ........+..-++++++.|+.. +.+.+||+.+..-
T Consensus 355 W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 355 W-TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred E-EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 2 22211 11111111222356777777743 2488999887643
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=7.1 Score=39.94 Aligned_cols=130 Identities=12% Similarity=-0.039 Sum_probs=62.9
Q ss_pred CCCcEEEEEeCC--CcEEEEECCCCceEEEeecCCCCe-EEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEE--EE
Q 011924 315 PDGKLLIIVGDN--PDGLLVDSMTGKTIASLCGHLDFS-FASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVA--VL 386 (475)
Q Consensus 315 p~g~~l~~~~~d--g~i~iwd~~~~~~~~~l~~h~~~v-~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~--~~ 386 (475)
-+|.+.++||.+ ..+..||..+++- ..+..-..+. ...+..-+|+..+.|+.++ ++..||.++ .+-.. .+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAW-VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH-DQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeE-EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC-CEEEeCCCC
Confidence 467777888753 3577888765532 2222111111 1111223677777777543 477888764 22111 11
Q ss_pred ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-cc-CCCeEEEEEcCCCCeEEEEEec
Q 011924 387 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DF-FGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 387 ~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~l~fspdg~~l~~~~~D 453 (475)
....... ++ ..-+|++.+.|+ .+.+||..+.+-..... .+ ......+. -+|+..++|+.+
T Consensus 395 ~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~ 456 (480)
T PHA02790 395 YYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFY 456 (480)
T ss_pred CCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcC
Confidence 1111111 11 233566666664 47789987764332211 11 11222222 366777777765
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.011 Score=57.44 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=94.7
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCCceEEEEec
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t-~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
...|.|.+.-+++++.+..+..|| +.|+....+. .++....++|.-++..++. +-..+.+.+||+.........+.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 456888777788888888888898 4455443333 4556677888887765544 456789999999642211111222
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEE
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 448 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~ 448 (475)
...-.-+.|++.+..++.+...+.+.|++..+.+.....-.|..++..++|.+.+..+.
T Consensus 117 -~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 117 -TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred -cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 12222378999999999999999999999877655544445889999999999875544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.6 Score=43.41 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCcEEEE-EeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCC--------CEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 316 DGKLLII-VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG--------VTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 316 ~g~~l~~-~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g--------~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
+..++.. ++....++-.|+..|+.+..+..|.+- -+.|.|.- ..|+--|+ ..|.-.|.|..+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecc-cceEEecccccCCceeee
Confidence 4444443 455667888899999999998877664 46777742 34444444 445555666544333332
Q ss_pred ecCCCceEEEEEcc----CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 387 KGNLGAIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 387 ~~~~~~v~~l~~sp----dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.. ...++.-.||. ..-++|+|+..|-|++||--.-.....+.+....|-.+..+.+|.+|++.+..
T Consensus 555 es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 21 11222333332 23489999999999999943323333445566789999999999999988753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.5 Score=36.85 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred eEEEEecCCCceEEEEEcc-------CCCEEEEEcCCCeEEEEECCCCeeEEEE---e-ccCCCeEEEEEcCCCCeEEEE
Q 011924 382 SVAVLKGNLGAIRSIRYTS-------DGRYMATAEPADFVHVYDVKSGYEKEQE---I-DFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~sp-------dg~~la~~~~dg~i~iwd~~~~~~~~~~---~-~~~~~i~~l~fspdg~~l~~~ 450 (475)
++..+..| .++..+.|-+ .|.++++.-..+.|....+..+..+... . ....++.++++.|||...++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 44444444 4566777753 4456666666678888888755333222 2 233489999999999888887
Q ss_pred EecCCc
Q 011924 451 VWDRTY 456 (475)
Q Consensus 451 ~~D~~~ 456 (475)
..++.+
T Consensus 324 d~~G~i 329 (331)
T PF07995_consen 324 DSDGKI 329 (331)
T ss_dssp -TTTTE
T ss_pred CCCCeE
Confidence 766544
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.48 E-value=13 Score=37.42 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=56.2
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEee-----cCCCCeEEEEEecCC------CEEEEEe----------
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLC-----GHLDFSFASAWHPNG------VTFATGN---------- 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~-----~h~~~v~~~~~sp~g------~~l~t~s---------- 366 (475)
.|+|.|+|++|++--..|.|++++..++.. +..+. .-.+....++++|+- ++|+...
T Consensus 34 ~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~ 113 (454)
T TIGR03606 34 ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP 113 (454)
T ss_pred EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence 778999998777664469999998655432 22121 125678899999874 2444432
Q ss_pred CCCeEEEEECCCC----CceEEEEecC----CCceEEEEEccCCCEEEEEcC
Q 011924 367 QDKTCRIWDLRNL----SESVAVLKGN----LGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 367 ~dg~v~iwd~~~~----~~~~~~~~~~----~~~v~~l~~spdg~~la~~~~ 410 (475)
....|.-|.+... ......+... ...-..|+|.|||.+.++.+.
T Consensus 114 ~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 114 NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1223444544311 1112222211 112357889999986654443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.42 E-value=5 Score=42.35 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------C-------------ceEEEeecCCCCeEEEEEe--cCCCEEEEEeCCCeEEE
Q 011924 316 DGKLLIIVGDNPDGLLVDSMT-------G-------------KTIASLCGHLDFSFASAWH--PNGVTFATGNQDKTCRI 373 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~l~~h~~~v~~~~~s--p~g~~l~t~s~dg~v~i 373 (475)
....|+++.+||.|.+|.+.+ . ++-..+. -...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556788899999999997631 0 0111222 23468899999 78899999988888888
Q ss_pred EECCCCCc--eEEEEecCCCceEEEEEccCC---C---EEEEEcCCCeEEEEEC
Q 011924 374 WDLRNLSE--SVAVLKGNLGAIRSIRYTSDG---R---YMATAEPADFVHVYDV 419 (475)
Q Consensus 374 wd~~~~~~--~~~~~~~~~~~v~~l~~spdg---~---~la~~~~dg~i~iwd~ 419 (475)
|-...... ....-..+...|.+|.|-++. . .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 76543111 111111245578899996643 2 7888888999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.6 Score=43.22 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=55.2
Q ss_pred eeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec----CCC-----------------EEEEEe
Q 011924 308 LQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP----NGV-----------------TFATGN 366 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp----~g~-----------------~l~t~s 366 (475)
+.+++.+|.+++.|+...-|.|.|+|+.++..++.++|..+.- +.|-. ..+ +++-+-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 4589999999999988888999999999999998888865532 22211 111 234455
Q ss_pred CCCeEEEEECCCCCceEEEEe
Q 011924 367 QDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~ 387 (475)
.-|.|.||.+++ +..+..+.
T Consensus 388 rRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCC-CCEEEEEE
Confidence 678999999987 55555444
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=4 Score=40.08 Aligned_cols=139 Identities=12% Similarity=0.015 Sum_probs=87.9
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCC---ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---ceE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---ESV 383 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~~~ 383 (475)
.+-|.-..+.++ +...|.+.-|-+... -++..-....++|.++.||||.+.+|.--.+.+|.+++..... ...
T Consensus 27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344443334333 334445555654422 2222223356799999999999999999999999999984211 122
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.+.+.....|....|+.+ +-+|.-+..| +-+|-+-.. ..++....|...|.-..|.|+.+.++.++
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 233344456889999876 6677776666 677765432 33444556777888888999887766543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.12 E-value=12 Score=36.12 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=84.3
Q ss_pred eeeEEECCCCcEEEEEeCCCc------EEEEECCC--C--ceEE-----EeecCCC--------CeEEEEEecCCCEEEE
Q 011924 308 LQHSSQSPDGKLLIIVGDNPD------GLLVDSMT--G--KTIA-----SLCGHLD--------FSFASAWHPNGVTFAT 364 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg~------i~iwd~~~--~--~~~~-----~l~~h~~--------~v~~~~~sp~g~~l~t 364 (475)
++.+.+.|++..+++.+++|. ++.+.+.. + ..+. .+..-.+ -.-++++.++|.++++
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is 101 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWIS 101 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEE
Confidence 348889976667777788887 66666543 1 1111 1221112 2337888778888888
Q ss_pred EeCC------CeEEEEECCCCCceEEEEe---------------cCCCceEEEEEccCCCEEEEEcC-----CC------
Q 011924 365 GNQD------KTCRIWDLRNLSESVAVLK---------------GNLGAIRSIRYTSDGRYMATAEP-----AD------ 412 (475)
Q Consensus 365 ~s~d------g~v~iwd~~~~~~~~~~~~---------------~~~~~v~~l~~spdg~~la~~~~-----dg------ 412 (475)
.-.+ ..|..++.. ++....+. ..+...-+++++|+|+.|+++.. |+
T Consensus 102 ~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 102 SEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred eCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 7667 788888864 44333321 12346789999999996655432 22
Q ss_pred -----eEEEEECCC-CeeEEEE--ec-------cCCCeEEEEEcCCCCeEEE
Q 011924 413 -----FVHVYDVKS-GYEKEQE--ID-------FFGEISGISFSPDTESLFI 449 (475)
Q Consensus 413 -----~i~iwd~~~-~~~~~~~--~~-------~~~~i~~l~fspdg~~l~~ 449 (475)
.|..||..+ +....++ .. ....|+.+.+-+++++|+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 3222222 11 2457899999999987764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.09 E-value=10 Score=35.29 Aligned_cols=225 Identities=15% Similarity=0.062 Sum_probs=124.7
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--- 267 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~--- 267 (475)
--.++.+.|++...+..+.-+.+.|+..+......-...........+++ +|++ ...+..|+.+.+-|+...
T Consensus 130 yaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I----SGn~-AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 130 YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI----SGNY-AYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred eEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE----ecCe-EEEEEeCCCeEEEEccCCCCC
Confidence 45567779999999987766778899877655433344444444566766 4665 445558888999998653
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-C
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-H 346 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h 346 (475)
.++.+......+. ++..+++-.+++.. +.-+.+.|..+.+....+-. .
T Consensus 205 vli~~~n~g~g~~-----------------------------sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsye 253 (370)
T COG5276 205 VLIGSYNTGPGTY-----------------------------SVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYE 253 (370)
T ss_pred eEEEEEecCCceE-----------------------------EEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccc
Confidence 3444444443455 66777766655554 33478888776664444322 1
Q ss_pred CCCeEEE-EEecCCCEEEEEeCCCeEEEEECCCCCceEEE--EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 347 LDFSFAS-AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 347 ~~~v~~~-~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+..+.++ .+.-.+++...+-.+.-+.+-|+.++..+... +.........++.+ |.++..+..+ ...+.+....+
T Consensus 254 t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s 330 (370)
T COG5276 254 TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPS 330 (370)
T ss_pred cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChh
Confidence 2222222 23335677777777777888888775543321 11111133344443 4566666554 45555544322
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..-...+....+.+.+.+-+.+.+.+.-+++
T Consensus 331 ~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~ 361 (370)
T COG5276 331 MMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG 361 (370)
T ss_pred hcccccCcceEeeecceEEEeeEEEEeecCC
Confidence 2111111112233334444555666666664
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.71 E-value=8.8 Score=33.81 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=94.9
Q ss_pred CCCeEEEEEeC--CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 245 SGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 245 ~g~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
+| .++.+.+. ...|++||+.+++.+...+.+.+-.|.- .+. .-|..+..
T Consensus 55 ~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE--------------------------Git--~~gd~~y~ 105 (262)
T COG3823 55 DG-HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE--------------------------GIT--KLGDYFYQ 105 (262)
T ss_pred CC-EEEEeccccccceeEEEeccCceEEEEeecCCcccccc--------------------------cee--eccceEEE
Confidence 44 34555543 3469999999998877665331111110 111 11223322
Q ss_pred -EeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---ceEEEEecC-CCceEEEE
Q 011924 323 -VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---ESVAVLKGN-LGAIRSIR 397 (475)
Q Consensus 323 -~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~~~~~~~~~-~~~v~~l~ 397 (475)
.-.+|..+.+|.++-+.+..+. .++.-+.++- ++..|+.+....+++.-|..+.. +...++.+. -..+..+.
T Consensus 106 LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE 182 (262)
T COG3823 106 LTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELE 182 (262)
T ss_pred EEeccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccccee
Confidence 2367888899998888777665 4455555544 55556666666677776654321 111222211 11222333
Q ss_pred EccCCCEEEEEcCCCeEEEEECCCCeeEEEEe------------ccCCCeEEEEEcCCCCeEEEEE
Q 011924 398 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEI------------DFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 398 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~i~~l~fspdg~~l~~~~ 451 (475)
|- +|...|-.-....|...+..+|+.+..+. .+....++|++.|++..++..+
T Consensus 183 ~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 183 WV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 32 45555544445556666667776554443 1334678999999986666554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.1 Score=38.77 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=25.5
Q ss_pred CceEEEEEccCC------CEEEEEcCCCeEEEEECC
Q 011924 391 GAIRSIRYTSDG------RYMATAEPADFVHVYDVK 420 (475)
Q Consensus 391 ~~v~~l~~spdg------~~la~~~~dg~i~iwd~~ 420 (475)
..+..++|||-| -+||+.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378899999955 378999999999999865
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.41 E-value=6.4 Score=38.77 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=70.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEE----EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA----SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~----~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
++.||+|.+.+|+--.+.+|.+++....+... +-+.....|...+|+.+ .-+|..+..| +.+|-+....+.++.
T Consensus 71 SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRl 148 (657)
T KOG2377|consen 71 SIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRL 148 (657)
T ss_pred EEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhh
Confidence 99999999999999999999999874333221 22223445888999876 5566665554 778877554556677
Q ss_pred EecCCCceEEEEEccCCCEEEEEc
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
.+.+...|.-..|+|+-+.+..++
T Consensus 149 Vks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 149 VKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhcccCccEEEEccccceEeeec
Confidence 777788888899999887554443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.3 Score=27.58 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=29.2
Q ss_pred cCCCEEEEEc-CCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 400 SDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 400 pdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
|++++|+++. .++.|.++|..++..+..+.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 6788776655 478999999998887776655 3445566654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.18 E-value=3 Score=41.61 Aligned_cols=78 Identities=8% Similarity=0.063 Sum_probs=52.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCC--------CceEEEEe-----------cCCCceEEEEEccCC---CEEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNL--------SESVAVLK-----------GNLGAIRSIRYTSDG---RYMA 406 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~--------~~~~~~~~-----------~~~~~v~~l~~spdg---~~la 406 (475)
.|..+..+|.|..++-++.+|.+..+=.+.. ++++.... ...-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667888999999999999986554432211 22111111 112246688999976 6888
Q ss_pred EEcCCCeEEEEECCCCeeEE
Q 011924 407 TAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~ 426 (475)
.-+.|+.|+|||+.....+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88899999999998765543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.23 Score=52.24 Aligned_cols=109 Identities=8% Similarity=-0.043 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE-----------EEecCCCEEEEEeCCCeEEEEECCCCC----
Q 011924 316 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS-----------AWHPNGVTFATGNQDKTCRIWDLRNLS---- 380 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~-----------~~sp~g~~l~t~s~dg~v~iwd~~~~~---- 380 (475)
+.-++..+-.++.+++....+... ..+.+|..++..+ ..+|||..||+++.||.++.|.+.-.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 555666666777777665543221 2334465544432 369999999999999999998775333
Q ss_pred ceEEEEecCCC-ceEEEEEccCC---------CEEEEEcC-CCeEEEEECCCCeeE
Q 011924 381 ESVAVLKGNLG-AIRSIRYTSDG---------RYMATAEP-ADFVHVYDVKSGYEK 425 (475)
Q Consensus 381 ~~~~~~~~~~~-~v~~l~~spdg---------~~la~~~~-dg~i~iwd~~~~~~~ 425 (475)
++++.++.|.+ +-.|.-|..+- +++++++. +..+++|.....+++
T Consensus 273 rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 46677777763 22232233222 23444443 345888886655544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.98 E-value=13 Score=34.32 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=101.6
Q ss_pred EEEEEE--cCcEEEEEecCc--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.-.+.+ ++.++-+.|.-| .|+.+++.+.+......+ ...----.+++ . +++ ++.-.=.++...+||..+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~--~-~d~-l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITI--L-GDK-LYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEE--E-TTE-EEEEESSSSEEEEEETTTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEE--E-CCE-EEEEEecCCeEEEEccccc
Confidence 345666 556666777776 677788877665432222 11111223444 2 233 3444448899999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC-
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH- 346 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h- 346 (475)
+.+..+..+..=- .++ .+|+.|+.+.....++.+|..+-+...++.-.
T Consensus 121 ~~~~~~~y~~EGW-----------------------------GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 121 KKIGTFPYPGEGW-----------------------------GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEEEEEE-SSS-------------------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred eEEEEEecCCcce-----------------------------EEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 9999888654333 444 46777777777778999998887776665421
Q ss_pred ----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---------------CCCceEEEEEccCCC-EEE
Q 011924 347 ----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---------------NLGAIRSIRYTSDGR-YMA 406 (475)
Q Consensus 347 ----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---------------~~~~v~~l~~spdg~-~la 406 (475)
-..+..+.|- +|...|=.=....|..-|..+ +..+..+.. ...-.+.+|+.|.+. +++
T Consensus 170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 1245556664 554444443455666677755 555554421 134578999998665 445
Q ss_pred EE
Q 011924 407 TA 408 (475)
Q Consensus 407 ~~ 408 (475)
||
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.92 E-value=8.7 Score=33.84 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=44.2
Q ss_pred cCcEEEEEecC--ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec
Q 011924 198 KDKLLVAGGFQ--GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 275 (475)
Q Consensus 198 ~~~~lvsg~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (475)
++.++.+.|.- ..|++|++.+.+..+...+.. ..+-.=-+ ..-|+.+..-.=.+|....+|..+.+.+..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGi--t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGI--TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccce--eeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 56666766654 468889998777665443321 01111011 112333333334788888999999888888775
Q ss_pred ccc
Q 011924 276 PWP 278 (475)
Q Consensus 276 ~~~ 278 (475)
++.
T Consensus 130 ~Ge 132 (262)
T COG3823 130 EGE 132 (262)
T ss_pred CCc
Confidence 543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.60 E-value=13 Score=33.99 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=79.7
Q ss_pred EEEEEeecccceEEEEee--ee--eeEEECCCCcEEEEEeCC---CcEEEEECCC---CceEE----EeecCCCCeEEEE
Q 011924 289 LLCRLLNFMTEKVIICLL--CL--QHSSQSPDGKLLIIVGDN---PDGLLVDSMT---GKTIA----SLCGHLDFSFASA 354 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~--~i--~~~~~sp~g~~l~~~~~d---g~i~iwd~~~---~~~~~----~l~~h~~~v~~~~ 354 (475)
+.-.+||+.+++...... .+ .+-++-|+|++|.+|+.. ..+++++... ..... .+. ...+--+..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~ 124 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTAT 124 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccce
Confidence 345677777665543211 11 133577899999998742 3577777543 11111 121 122223344
Q ss_pred EecCCCEEEEEeCCC-eEEEEECCCCCc-eEE--EEec-----CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 355 WHPNGVTFATGNQDK-TCRIWDLRNLSE-SVA--VLKG-----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg-~v~iwd~~~~~~-~~~--~~~~-----~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
.-|||+.|+.|+... +..+|.-+.... ... .+.. ...--..+...|+|++++.+..+ -.|||..+.+.+
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~ 202 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVV 202 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEE
Confidence 567999999887764 456666532111 111 1111 11122356678999999888765 467798887666
Q ss_pred EEEeccCCC
Q 011924 426 EQEIDFFGE 434 (475)
Q Consensus 426 ~~~~~~~~~ 434 (475)
+.+....+.
T Consensus 203 ~~lP~lPg~ 211 (243)
T PF07250_consen 203 RTLPDLPGG 211 (243)
T ss_pred eeCCCCCCC
Confidence 666554443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.4 Score=38.19 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=53.8
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEE----eeec-------CCCCceeEEEEEeCCCCCeEEEEEeCCCe
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCS----RTTY-------DDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~----~~~~-------~~~~~v~~l~~~~s~~g~~~l~s~s~dg~ 258 (475)
+++..|...+++|++-+.+|.+++||+...+..... .+.. .....|..+.+ +.+|.. +++-+ +|.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l--t~~G~P-iV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL--TSNGVP-IVTLS-NGD 88 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE--cCCCCE-EEEEe-CCC
Confidence 367778889999999999999999999876643221 1111 34456677777 888876 55543 477
Q ss_pred EEEEECCCCeeee
Q 011924 259 VRDFDMGKYQLSK 271 (475)
Q Consensus 259 v~iwd~~~~~~~~ 271 (475)
...|+..-+..+.
T Consensus 89 ~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 89 SYSYSPDLGCWIR 101 (219)
T ss_pred EEEeccccceeEE
Confidence 8888876554443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.041 Score=53.76 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=95.6
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
..++++.+.+-|.+.. ++.++.+..|..||-. ++.......++..- .++
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~al-----------------------------dm~ 81 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKAL-----------------------------DMA 81 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHh-----------------------------hhh
Confidence 3456666666888887 6666677888888853 44444444555444 778
Q ss_pred ECCCCcEEEE-EeCCCcEEEEECCCCceEEEee--c-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 313 QSPDGKLLII-VGDNPDGLLVDSMTGKTIASLC--G-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 313 ~sp~g~~l~~-~~~dg~i~iwd~~~~~~~~~l~--~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
|.-+|..+++ +-..+.+.+||+.+... +.++ + |.... +.|++....++.+...|.++|++... .+.+-....
T Consensus 82 wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gk 157 (615)
T KOG2247|consen 82 WDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGK 157 (615)
T ss_pred hccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccc-hhhhhhhcc
Confidence 8888776655 45678899999875432 2222 1 22222 68999999999999999999999876 333333333
Q ss_pred CCCceEEEEEccCCCEEEEE
Q 011924 389 NLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~ 408 (475)
|...++++++.+.+..+...
T Consensus 158 h~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cccceeEEEecccceeeecC
Confidence 77788999999988655443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.85 E-value=2.1 Score=38.57 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=48.4
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEE------Ee-------cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAV------LK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~------~~-------~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+..+++++++...+|.+++||+.+....+.. +. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4557889999999999999999873221111 11 2445788899999998777765 46789998654
Q ss_pred C
Q 011924 422 G 422 (475)
Q Consensus 422 ~ 422 (475)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.4 Score=44.15 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=45.3
Q ss_pred cCcEEEEEecCceEEEEeCCC---CCceEEEeeecCC--------------------CCceeEEEEEeCC---CCCeEEE
Q 011924 198 KDKLLVAGGFQGELICKHLDR---PGVSFCSRTTYDD--------------------NAITNAVEIYGSP---SGAVHFT 251 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~~--------------------~~~v~~l~~~~s~---~g~~~l~ 251 (475)
+...++.+..+|.+....... .+..........+ .+.+..+++ ++ ++..+++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 234 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAV--SSSEINDDTFLF 234 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-------ETTTEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEE--ecceeCCCCEEE
Confidence 778888888999998888765 2222211111111 234455555 44 2344588
Q ss_pred EEeCCCeEEEEECCCCeeeeeee
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
+-+.|+++|+||+.+++++.+..
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEec
Confidence 88999999999999999977654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.31 E-value=19 Score=33.80 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=100.3
Q ss_pred cEEEEEecCceEEEEeCCCCCc---eEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee--eee
Q 011924 200 KLLVAGGFQGELICKHLDRPGV---SFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS--KHF 273 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~---~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~--~~~ 273 (475)
..++.++.+|+|.-|....... ......-.. ....-..+++.....+..+.++--..++|.+||-.-.+.. ..|
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 3467888999999998532222 111111111 1223345666334446665666667889999985322221 112
Q ss_pred ecc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--cCCCCe
Q 011924 274 RFP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFS 350 (475)
Q Consensus 274 ~~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v 350 (475)
..+ -|..|.|-+- .++ .....|+-..-.+++..=+.+...|.|-++|+ .|+.++++. +.-...
T Consensus 181 ~DP~iPagyAPFnI-------qni------g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 181 IDPALPAGYAPFNV-------QNL------GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAP 246 (336)
T ss_pred cCCCCCCCCCCcce-------EEE------CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCC
Confidence 111 1111222110 000 00001112222344433344555688999996 588888885 334556
Q ss_pred EEEEEec------CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC------ceEEEEEcc
Q 011924 351 FASAWHP------NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG------AIRSIRYTS 400 (475)
Q Consensus 351 ~~~~~sp------~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~------~v~~l~~sp 400 (475)
+.++..| .+.+|+----||+|..+|..+ +..+-.+....+ .++.+.|..
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7777766 456666666799999999865 666666655332 456777754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.26 E-value=14 Score=37.14 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=40.6
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEe-----cCCCceEEEEEccCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLK-----GNLGAIRSIRYTSDG 402 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~-----~~~~~v~~l~~spdg 402 (475)
.+...-...+.++|.|+|++|++--..|.|++++..... ..+..+. ...+....|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344445678899999999888777657999999864321 1221111 134677899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.2 Score=26.56 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 244 ~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
|+++.++++...+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677767777778999999998888877776
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.86 E-value=16 Score=32.41 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=62.9
Q ss_pred cEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEEEEecCCCEEEEEeC---CC---eEEEEE-CCC---CCceEE-
Q 011924 318 KLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DK---TCRIWD-LRN---LSESVA- 384 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~--~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~---dg---~v~iwd-~~~---~~~~~~- 384 (475)
..|.++.....|.+|++. ..++..++.. -+.|..+.++..|++++|--. .. .+|+|= .+. ..+++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344344566789999988 3345666664 478999999999999998743 22 567752 111 112222
Q ss_pred EEec---------------------CCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCC
Q 011924 385 VLKG---------------------NLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 385 ~~~~---------------------~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~ 422 (475)
.+-| ...++.+++..| .|+. +.|+ ++.+.||.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEE
Confidence 1111 123567888888 5654 4555 457999987654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.85 E-value=21 Score=33.66 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=97.9
Q ss_pred eEEEEeCCCCCceEEEeee---cCCCCceeEEEEEeCCC---CCeEEEEEeCCCeEEEEECCCCeeeeeeec---c--cc
Q 011924 210 ELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPS---GAVHFTASNNDCGVRDFDMGKYQLSKHFRF---P--WP 278 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~~~s~~---g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~--~~ 278 (475)
+|.+||+.+.+......+. ....+..+.+.+...+. ..+..++-+..+.|.|+|+.+++..+...+ + ..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5666777766643322221 12456778888853332 134466666667999999999887665542 1 11
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCCCcEEEEECC-----CCc---------eEE
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDNPDGLLVDSM-----TGK---------TIA 341 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~dg~i~iwd~~-----~~~---------~~~ 341 (475)
..|.- .+........+..++.+| +|+.|....-.+ -++|.+. ... .+.
T Consensus 115 ~~~~i--------------~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~ 179 (287)
T PF03022_consen 115 GPFTI--------------GGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQ 179 (287)
T ss_dssp EEEEE--------------TTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-E
T ss_pred cceec--------------cCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccce
Confidence 22111 122222222344677765 777777665433 1233322 111 122
Q ss_pred EeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEe-c-C-CCceEEEEEcc--CCCEEEEE
Q 011924 342 SLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLK-G-N-LGAIRSIRYTS--DGRYMATA 408 (475)
Q Consensus 342 ~l~~h-~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~-~-~-~~~v~~l~~sp--dg~~la~~ 408 (475)
.+ |. ......++.+++|.++++--....|..|+....-. ....+. . . ...+..+++.+ +|.+.+.+
T Consensus 180 ~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 180 DL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 22 22 23566788999999999999999999999875211 122221 1 2 35678899998 77655554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.56 E-value=7.7 Score=38.91 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=46.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEE---------CCCCceEEEee-----------cCCCCeEEEEEecCC---CEEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVD---------SMTGKTIASLC-----------GHLDFSFASAWHPNG---VTFATGN 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd---------~~~~~~~~~l~-----------~h~~~v~~~~~sp~g---~~l~t~s 366 (475)
-+..++.|..++..|.+|-+.++= +..|+++..-. ...-.+..++|||++ ..|..-+
T Consensus 108 ~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~ 187 (741)
T KOG4460|consen 108 QVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT 187 (741)
T ss_pred EEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEe
Confidence 778899999999988888554432 12343321111 112246678999965 5677777
Q ss_pred CCCeEEEEECCC
Q 011924 367 QDKTCRIWDLRN 378 (475)
Q Consensus 367 ~dg~v~iwd~~~ 378 (475)
.|.++||||+..
T Consensus 188 sdnviRiy~lS~ 199 (741)
T KOG4460|consen 188 SDNVIRIYSLSE 199 (741)
T ss_pred cCcEEEEEecCC
Confidence 899999999864
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.44 E-value=18 Score=32.23 Aligned_cols=94 Identities=18% Similarity=0.332 Sum_probs=58.4
Q ss_pred CCEEEEEeCCCeEEEEECCC-CCceEEEEecCCCceEEEEEccCCCEEEEEcCC---C---eEEEE---ECC--CCeeEE
Q 011924 359 GVTFATGNQDKTCRIWDLRN-LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---D---FVHVY---DVK--SGYEKE 426 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g---~i~iw---d~~--~~~~~~ 426 (475)
+.+|++ .....|.+|++.. ..+++..+.. -+.|..+.++..|.+|++-..+ . .+|+| ... ...++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 344443 4556799999973 2445566654 3789999999999999998653 2 66775 222 111111
Q ss_pred -EEec---------------------cCCCeEEEEEcCCCCeEEEEEecC
Q 011924 427 -QEID---------------------FFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 427 -~~~~---------------------~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+.+ ...++.+++-.|-.--|++|+.+.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~ 156 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK 156 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE
Confidence 1111 223567788888666677777654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=88.33 E-value=42 Score=36.46 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=69.1
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE
Q 011924 250 FTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG 329 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i 329 (475)
+..++.++.|.-.|..+++.+-.+.....+.........-.+..|+...+..... + ..+-...+..+++++.|+.+
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~---~-~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPA---A-PAAPADCARRIILPTSDARL 272 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccc---c-cccccccCCEEEEecCCCeE
Confidence 5666678899999999999888776443322100000000111122111100000 0 00001245678888899999
Q ss_pred EEEECCCCceEEEeecCCCCe-------------EEEEEec--CCCEEEEEeC----------CCeEEEEECCCCCceE
Q 011924 330 LLVDSMTGKTIASLCGHLDFS-------------FASAWHP--NGVTFATGNQ----------DKTCRIWDLRNLSESV 383 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v-------------~~~~~sp--~g~~l~t~s~----------dg~v~iwd~~~~~~~~ 383 (475)
+-.|.++|+.+..+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|+++ ++.+
T Consensus 273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~ 349 (764)
T TIGR03074 273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALV 349 (764)
T ss_pred EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEe
Confidence 9999999998876632 1111 1122233 2345666643 68899999987 5543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=88.28 E-value=50 Score=37.30 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=20.1
Q ss_pred cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 431 FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+...+.+++.+|||..+++-..+-.++
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhhh
Confidence 445788999999999888766555544
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=26 Score=33.91 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=79.4
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
.+.+.|++.+++++ ..|.+..-.-..++....+. +-...+.++.+.|+++.++++ ..|.+++=.... +..-.....
T Consensus 177 ~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~-G~sW~~~~~ 253 (334)
T PRK13684 177 NLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD-LESWSKPII 253 (334)
T ss_pred EEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC-CCccccccC
Confidence 88899988766555 55644432112233333332 334678899999999877766 557665322222 222221111
Q ss_pred ----CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe---ccCCCeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 389 ----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 389 ----~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
....+..+.+.|+++.++++ .+|.|. .....|..-.... ........+.|..+++.+++|. . |.+|+
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~---G~il~ 327 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-R---GVLLR 327 (334)
T ss_pred CccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-C---ceEEE
Confidence 22357789999988766655 466444 3334443322221 2224577888887776665543 3 45555
Q ss_pred EE
Q 011924 462 YG 463 (475)
Q Consensus 462 ~~ 463 (475)
+.
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 54
|
|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.34 Score=46.99 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.0
Q ss_pred EEEEEec
Q 011924 201 LLVAGGF 207 (475)
Q Consensus 201 ~lvsg~~ 207 (475)
=+|+|+.
T Consensus 194 DFVCGTL 200 (458)
T PF10446_consen 194 DFVCGTL 200 (458)
T ss_pred cccCCCc
Confidence 3444443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.91 E-value=26 Score=33.59 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=34.5
Q ss_pred CCcEEEEEeC-----CCcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCC
Q 011924 316 DGKLLIIVGD-----NPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRN 378 (475)
Q Consensus 316 ~g~~l~~~~~-----dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg----~v~iwd~~~ 378 (475)
++++.+.|+. ...+..||+.+.+- ..+.. ........+...++++.+.|+.++ .+.+||..+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW-FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCe-eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 5677777764 23578888876542 22221 111222233334677778777653 356788764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.41 Score=50.47 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=59.1
Q ss_pred CcEEEEECC--CCceEEE-----eecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE
Q 011924 327 PDGLLVDSM--TGKTIAS-----LCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396 (475)
Q Consensus 327 g~i~iwd~~--~~~~~~~-----l~~h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l 396 (475)
|.+.+|++. .|+.... ......++.-+.|.| +..++..+-.+++|++.......+ ..+.+|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccH
Confidence 568889876 4543322 233344556667766 667788888888988877643222 3333454433322
Q ss_pred -----------EEccCCCEEEEEcCCCeEEEEEC
Q 011924 397 -----------RYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 397 -----------~~spdg~~la~~~~dg~i~iwd~ 419 (475)
..||||+.+|+++.||.+++|-+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 37999999999999998888865
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.39 E-value=28 Score=33.37 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=16.8
Q ss_pred CCCCcEEEEEeCCC----cEEEEECCCCc
Q 011924 314 SPDGKLLIIVGDNP----DGLLVDSMTGK 338 (475)
Q Consensus 314 sp~g~~l~~~~~dg----~i~iwd~~~~~ 338 (475)
..++++.+.|+.++ .+.+||+.+.+
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCCCe
Confidence 34677888887653 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.69 E-value=31 Score=33.20 Aligned_cols=146 Identities=21% Similarity=0.269 Sum_probs=85.0
Q ss_pred eEEECCCCcEEEEEeCC------CcEEEEECCCCceEEEee---------------cCCCCeEEEEEecCCCEEEEEeC-
Q 011924 310 HSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIASLC---------------GHLDFSFASAWHPNGVTFATGNQ- 367 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d------g~i~iwd~~~~~~~~~l~---------------~h~~~v~~~~~sp~g~~l~t~s~- 367 (475)
++++.++|.++++.-.+ ..|+.++.. |+....+. ......-+++++|+|+.|+++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 77887788888777666 778888866 76655442 12345678999999997776643
Q ss_pred ----CC---------eEEEEECC--CCCceEEE----Eec-----CCCceEEEEEccCCCEEEEEcC-----CCeEEEE-
Q 011924 368 ----DK---------TCRIWDLR--NLSESVAV----LKG-----NLGAIRSIRYTSDGRYMATAEP-----ADFVHVY- 417 (475)
Q Consensus 368 ----dg---------~v~iwd~~--~~~~~~~~----~~~-----~~~~v~~l~~spdg~~la~~~~-----dg~i~iw- 417 (475)
|+ .++|+... ..+.+... +.. ....|+.+.+-+++++|+.--. ...++||
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 15555443 31222222 221 3457889999999997765322 2345555
Q ss_pred -ECCCCe--------------eE-EEEe----c---cCCCeEEEEEcC--CCCeEEEEEecCCc
Q 011924 418 -DVKSGY--------------EK-EQEI----D---FFGEISGISFSP--DTESLFIGVWDRTY 456 (475)
Q Consensus 418 -d~~~~~--------------~~-~~~~----~---~~~~i~~l~fsp--dg~~l~~~~~D~~~ 456 (475)
++.... .+ ..+. . ....+-+|+|-| +|+..+.-.+|...
T Consensus 248 v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 248 VDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred EEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 433210 00 0010 1 145678999987 67765554556555
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=86.64 E-value=2.5 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred EecCCCceEEEEEccCCCEEEEEcC-C--CeEEEE
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEP-A--DFVHVY 417 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~-d--g~i~iw 417 (475)
+....+.-....|||||+.|+.++. + |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444556778999999998876654 3 445444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=36 Score=33.80 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=60.6
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce-----EEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-----IASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-----~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
.+.+.+++.+++++ ..|.+. +....++. ...+.. -...+.++.|.+++..+++| ..|.+....- . ++.
T Consensus 285 ~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D-~-G~t 359 (398)
T PLN00033 285 NMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD-G-GKS 359 (398)
T ss_pred eeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC-C-Ccc
Confidence 88899999888766 555543 44445542 222221 12348889999888766666 5676655532 2 333
Q ss_pred EEEEe---cCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 383 VAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 383 ~~~~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
-.... .-......+.|.++++-+++| .+|.|.-|
T Consensus 360 W~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 360 WKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 22222 223467899998877766665 46665543
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=86.13 E-value=5.7 Score=42.84 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE-EeCCC-----eEEEEECCCCCceEEEEecCCC
Q 011924 318 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDK-----TCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t-~s~dg-----~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
+++.+....+.|.+-|.....+...-..+..+|.+.+|||||+.||- .+..+ .|.+-|+++.+.-+..+.-...
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 33333333458888897655544331336889999999999999998 44433 5889999887776677777777
Q ss_pred ceEEEEEccCCCE
Q 011924 392 AIRSIRYTSDGRY 404 (475)
Q Consensus 392 ~v~~l~~spdg~~ 404 (475)
+|..-+..++|..
T Consensus 400 aiprwrv~e~gdt 412 (912)
T TIGR02171 400 AIPRWRVLENGDT 412 (912)
T ss_pred cccceEecCCCCe
Confidence 8877777887763
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=33 Score=35.58 Aligned_cols=137 Identities=10% Similarity=0.024 Sum_probs=81.5
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE-Ee-
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LK- 387 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~-~~- 387 (475)
+++.++++..++....++.+.++... +.....+.+ ..+..-.|.++| .+-+.-.....++......+..... ..
T Consensus 338 s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 338 AATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred cceEcCCCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 78999999999988777777777654 233323332 235666787777 5656544444555554332333211 11
Q ss_pred cCCCceEEEEEccCCCEEEEEcC---CCeEEEEEC--CCC--eeE----EEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDV--KSG--YEK----EQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~--~~~--~~~----~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
...+.|+.++.|+||-.+|.-.. .++|.|--+ ..+ ..+ ..+..-.+.+.++.|..++...+.+
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 12357999999999977665432 345665332 222 122 1111123588999999998876666
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=85.06 E-value=5.5 Score=41.50 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=28.1
Q ss_pred ceEEEEEcc----CCCEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 392 AIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 392 ~v~~l~~sp----dg~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
.+..++.++ +..+|++.+.|+.+++||+.++.++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455566666 6689999999999999999999885544
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.85 E-value=34 Score=31.98 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=110.4
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--- 267 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~--- 267 (475)
-+..+.+.+++...+..+.-+++.|+.++........ ....+...++.+ .|++ +..+..|...-+.|+.+.
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~-lnt~gyaygv~v----sGn~-aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF-LNTDGYAYGVYV----SGNY-AYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcceecc-ccCCceEEEEEe----cCCE-EEEeeccCcEEEEECCCCCCc
Confidence 3556666888888888888899999988775532222 222244555555 6776 555545666677787553
Q ss_pred eeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce---EEEe
Q 011924 268 QLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASL 343 (475)
Q Consensus 268 ~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~l 343 (475)
++...... .+... .+++| |++-.++..++-+.|.|+..... +...
T Consensus 162 ~lagrya~~~~d~~-----------------------------~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 162 QLAGRYALPGGDTH-----------------------------DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred eeeeeeccCCCCce-----------------------------eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 23333332 22222 45554 56666777888899999875532 2222
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
. ....+.++..+++--+++.. +.-+.+-|......+... ......++.--.|.-.|++...+..+..+.+-|+.+.
T Consensus 211 n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 211 N-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred e-cCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 2 22367888777766555554 334777787654432211 1112222222123334667777777777777777653
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.51 E-value=34 Score=31.68 Aligned_cols=149 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred eeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec
Q 011924 309 QHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 388 (475)
Q Consensus 309 ~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~ 388 (475)
..++-.|||..-.++...+.|--.|..+|+....--+.......+...|||..-++-+.. .|.-.|-++.......+..
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc
Q ss_pred --CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceE
Q 011924 389 --NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 389 --~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~l 459 (475)
.........|.+.|++-.++. .|.--=.|..++....--....+...+|+-.|+|+.-++...+..+..+
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred ccCCCcccceeeCCCccEEEeec-cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.00 E-value=71 Score=34.94 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred EeCCCCCceEEEeee-----cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE--------------------EECCCCe
Q 011924 214 KHLDRPGVSFCSRTT-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD--------------------FDMGKYQ 268 (475)
Q Consensus 214 w~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i--------------------wd~~~~~ 268 (475)
||............. ......+..+++.--..|..+-++.-....+.. |.+..+.
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEE----------ECC---
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV----------DSM--- 335 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iw----------d~~--- 335 (475)
.++.+.+..... .+.+..++|++=.......+- ...
T Consensus 81 PI~qI~fa~~~~-------------------------------~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~ 129 (765)
T PF10214_consen 81 PIKQIKFATLSE-------------------------------SFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSR 129 (765)
T ss_pred CeeEEEeccccc-------------------------------ccCCcCcEEEEEcCCEEEEEEcccccccccccCCccc
Q ss_pred -CCceEEEeecCC---CCeEEEEEec-CCCEEEEEeCCCeEEEEEC----CCCCceEEEEecCCCce------E----EE
Q 011924 336 -TGKTIASLCGHL---DFSFASAWHP-NGVTFATGNQDKTCRIWDL----RNLSESVAVLKGNLGAI------R----SI 396 (475)
Q Consensus 336 -~~~~~~~l~~h~---~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~----~~~~~~~~~~~~~~~~v------~----~l 396 (475)
...++..+..+. .+...++|+| +...||.....|...||++ ..............+.+ . .+
T Consensus 130 i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI 209 (765)
T PF10214_consen 130 IDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRI 209 (765)
T ss_pred cccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceee
Q ss_pred EEccCCCEEEEEcCCCeEEEEECCCCee--EEEEeccCCCeEEEEEcCC--CCeEEEEE
Q 011924 397 RYTSDGRYMATAEPADFVHVYDVKSGYE--KEQEIDFFGEISGISFSPD--TESLFIGV 451 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~fspd--g~~l~~~~ 451 (475)
.|.++-..|++++... +.++|+.+... ..........|.++.-+|. +..++..+
T Consensus 210 ~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSK-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred EecCCCCEEEEEcCCc-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec
|
These proteins are found in fungi. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.81 E-value=63 Score=34.25 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=29.8
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
..+..+..||+.++|+--...|.|.+-++.. .+....+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 5577889999999999999999888888754 44444443
|
|
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=83.69 E-value=0.77 Score=49.97 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=5.1
Q ss_pred ceeeecccce
Q 011924 126 STILHFQLRN 135 (475)
Q Consensus 126 ~~~~h~~lr~ 135 (475)
....||..|.
T Consensus 767 ~~~~~Fk~Rv 776 (784)
T PF04931_consen 767 ENVIHFKNRV 776 (784)
T ss_pred HHHHHHHHHH
Confidence 3445666554
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=83.68 E-value=11 Score=28.52 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.3
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
+..+|.+.-||..+++.. .+..--.-.++++++||+.+|+++-
T Consensus 33 ~~~~GRll~ydp~t~~~~-vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT-VLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEE-EEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEE-EehhCCCccCeEEEcCCCCEEEEEe
Confidence 345688999999887543 3333345788999999999988864
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.66 E-value=28 Score=39.15 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=47.5
Q ss_pred eEEECCCCcEEEEEeCCCcEE--EEECCCC---c-e----------------EEEee-cCCCCeEEEEEecCCCEEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGL--LVDSMTG---K-T----------------IASLC-GHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~--iwd~~~~---~-~----------------~~~l~-~h~~~v~~~~~sp~g~~l~t~s 366 (475)
|+....+|+.+.+| .||.++ +|....| + + +-.+. .+.++|..+......+.+++-+
T Consensus 183 ~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~ls 261 (1311)
T KOG1900|consen 183 CITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLS 261 (1311)
T ss_pred EEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeec
Confidence 88877788877766 555444 2222222 1 0 11123 4678999999998888999999
Q ss_pred CCCeEEEEECCC
Q 011924 367 QDKTCRIWDLRN 378 (475)
Q Consensus 367 ~dg~v~iwd~~~ 378 (475)
..++|++||+..
T Consensus 262 ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 262 EKGTVSAYDIGG 273 (1311)
T ss_pred cCceEEEEEccC
Confidence 999999999965
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.53 E-value=56 Score=33.41 Aligned_cols=114 Identities=24% Similarity=0.138 Sum_probs=60.1
Q ss_pred EEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC---eEEEEEecCCCEEEEEe--------------CCCeEEE
Q 011924 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF---SFASAWHPNGVTFATGN--------------QDKTCRI 373 (475)
Q Consensus 311 ~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~---v~~~~~sp~g~~l~t~s--------------~dg~v~i 373 (475)
+..-++|.+++..+ ..+..+|+ .|+.+......... -..+..-|+|++|+.+. .|. |..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEE
Confidence 45678888887665 67888887 47766655432221 24567789999998887 222 333
Q ss_pred EECCCCCceEEEEec-------------------------C--CCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 374 WDLRNLSESVAVLKG-------------------------N--LGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 374 wd~~~~~~~~~~~~~-------------------------~--~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
+| .+ ++.+..+.. . --.+.++.+.| ++.+|+++-.-..|...|.++++..
T Consensus 229 vd-~t-G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 229 VD-PT-GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp E--TT-S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred EC-CC-CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 33 22 333322210 0 02478899988 6677777777778999998888665
Q ss_pred EEEec
Q 011924 426 EQEID 430 (475)
Q Consensus 426 ~~~~~ 430 (475)
..+-.
T Consensus 307 Wilg~ 311 (477)
T PF05935_consen 307 WILGP 311 (477)
T ss_dssp EEES-
T ss_pred EEeCC
Confidence 55443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=83.30 E-value=46 Score=32.22 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=18.4
Q ss_pred EEEEcCcEEEEEecC-----------ceEEEEeCCCCCce
Q 011924 194 TLAVKDKLLVAGGFQ-----------GELICKHLDRPGVS 222 (475)
Q Consensus 194 ~l~~~~~~lvsg~~d-----------g~i~vw~~~~~~~~ 222 (475)
....++++.+.||.. ..+.+||.......
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 344488888899864 24666776655433
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=83.27 E-value=47 Score=35.40 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=70.2
Q ss_pred eEEECCCCcEEEEEeC----CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCC
Q 011924 310 HSSQSPDGKLLIIVGD----NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLS 380 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~ 380 (475)
-+.|..|..+.+++.. ...+++|. +.|+.-..-....+.-..+.|-|+|..++|-..|| .|+++.- + +
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-N-G 282 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-N-G 282 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEcc-C-C
Confidence 4567667777666642 23455654 33332221122223334589999999999987665 2454443 2 1
Q ss_pred ceEEEE---ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 381 ESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 381 ~~~~~~---~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
-....+ .+-...+..++|.-....++.+. .+.|++|-.++-............++-+.|+|.
T Consensus 283 LrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 283 LRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred cccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 111111 11122455677776666666655 457999997764322222222345677888884
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.22 E-value=63 Score=34.31 Aligned_cols=139 Identities=24% Similarity=0.215 Sum_probs=79.3
Q ss_pred eEEECCCCcEEEEEeCCC----cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe------CCCe-------EE
Q 011924 310 HSSQSPDGKLLIIVGDNP----DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKT-------CR 372 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg----~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s------~dg~-------v~ 372 (475)
.+.|+|+|..++..+.++ .+++.+.. + .+..+...+....|+|.++.++... .++. +.
T Consensus 64 ~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (620)
T COG1506 64 ELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLP 138 (620)
T ss_pred ccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccc
Confidence 778999999999887333 23344433 3 3344556677889999988887721 1222 23
Q ss_pred EEECCCCCc--e---------EEEEecCCCceEEEEEccCCCEEEEEcCCCe-------EEEEECCCCeeEEEEeccCCC
Q 011924 373 IWDLRNLSE--S---------VAVLKGNLGAIRSIRYTSDGRYMATAEPADF-------VHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 373 iwd~~~~~~--~---------~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~ 434 (475)
+|.....+. . ..........+...+++++++.++....+.. ..++...++ .+.......+.
T Consensus 139 ~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 217 (620)
T COG1506 139 VWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELESLTPGEGS 217 (620)
T ss_pred eeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEEEcCCCce
Confidence 333222101 1 1112223345666667777777766654432 333333333 34444555667
Q ss_pred eEEEEEcCCCCeEEEEEecC
Q 011924 435 ISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~ 454 (475)
+..+.|.++|+.++..+...
T Consensus 218 ~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 218 ISKLAFDADGKSIALLGTES 237 (620)
T ss_pred eeeeeeCCCCCeeEEeccCC
Confidence 89999999999777654443
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.97 E-value=81 Score=34.86 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=56.6
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC---CeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG---AVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g---~~~l~s~s~dg~v~iwd~~~ 266 (475)
..|...+++...+|.+..+|.+.-+..+..+.......-..-+..+.|+++..-+.| ..+++.++.|+++++..+..
T Consensus 540 ~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 540 VRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 456666678888888888999888877644443322222334566788888333322 23588899999999999976
Q ss_pred Ceeeeeee
Q 011924 267 YQLSKHFR 274 (475)
Q Consensus 267 ~~~~~~~~ 274 (475)
...+..+.
T Consensus 620 ~d~l~~ls 627 (1205)
T KOG1898|consen 620 SDCLQPLS 627 (1205)
T ss_pred cceEEEcc
Confidence 65555544
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=82.64 E-value=5.4 Score=24.42 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=21.0
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeC-C--CeEEEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQ-D--KTCRIW 374 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~-d--g~v~iw 374 (475)
+......-....|+|||+.|+-++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445566788999999998886654 4 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=82.56 E-value=45 Score=31.65 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=52.6
Q ss_pred eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE-----EEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-----ASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~-----~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.+.++...++|.+|+++-.-..|.+.|.++|+.+..+.|....-+ ..+|-.+-+++-.+..+++|.|+|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 344788888999999988888999999999999999977522111 24444455555556778899999974
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=82.51 E-value=54 Score=34.21 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=76.8
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCc----e
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSE----S 382 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~----~ 382 (475)
+++.++++..++....++. .+|-...+.... .+.+. .+..-.|.++| .+-+.-.+. .|....-..... .
T Consensus 347 s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~ 422 (573)
T PRK13614 347 SPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQAP 422 (573)
T ss_pred ceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccccc
Confidence 7899999999988877662 333322233332 34432 36667788877 565654433 444433211111 1
Q ss_pred E--EEEecCCC-ceEEEEEccCCCEEEE-EcCCCe--EEEEEC---CCCeeEEEEe----ccCCCeEEEEEcCCCCeEEE
Q 011924 383 V--AVLKGNLG-AIRSIRYTSDGRYMAT-AEPADF--VHVYDV---KSGYEKEQEI----DFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 383 ~--~~~~~~~~-~v~~l~~spdg~~la~-~~~dg~--i~iwd~---~~~~~~~~~~----~~~~~i~~l~fspdg~~l~~ 449 (475)
+ .......+ .|+.++.|+||-.+|. .+.+|. |.|--+ ..|.+..... .....+.++.|..++..++.
T Consensus 423 ~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~ 502 (573)
T PRK13614 423 TVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVT 502 (573)
T ss_pred ceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEE
Confidence 1 11122223 4999999999976655 434554 665433 3443111111 22367899999999876665
Q ss_pred EE
Q 011924 450 GV 451 (475)
Q Consensus 450 ~~ 451 (475)
+.
T Consensus 503 ~~ 504 (573)
T PRK13614 503 KA 504 (573)
T ss_pred ec
Confidence 53
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.36 E-value=26 Score=32.93 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=58.7
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe------CCCeEEEEECCCCCceEEEEecC-----CCceE
Q 011924 326 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKTCRIWDLRNLSESVAVLKGN-----LGAIR 394 (475)
Q Consensus 326 dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s------~dg~v~iwd~~~~~~~~~~~~~~-----~~~v~ 394 (475)
...|.+||..+.+-...-.+-.+.|.++.|..+.++++.|. ....+..||+.+ .....+.+. .++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45689999876654444445667899999987777777775 355788999864 334444442 36787
Q ss_pred EEEEcc-CC-CEEEEEc-C--CCeEEEEECC
Q 011924 395 SIRYTS-DG-RYMATAE-P--ADFVHVYDVK 420 (475)
Q Consensus 395 ~l~~sp-dg-~~la~~~-~--dg~i~iwd~~ 420 (475)
.+.+.. |+ ++.+.|. . +..|..||=.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 777743 33 3444433 2 3457777643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.06 E-value=46 Score=35.25 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=39.3
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCC
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDT 444 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg 444 (475)
+....+.+..+..||++++||.=...|.|.+-++...+....+.. .......++|.-+.
T Consensus 212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 333345788999999999999999999999988765554444331 11223356665443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.23 E-value=73 Score=32.51 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCceEEEeecC----CCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCc
Q 011924 316 DGKLLIIVGDN-----PDGLLVDSMTGKTIASLCGH----LDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSE 381 (475)
Q Consensus 316 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~l~~h----~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~ 381 (475)
++++.+.|+.+ ..+.++|+.+.+-. .+... .......+..-++++.+.|+.++ .+..||+.+ .+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t-~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD-KK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC-CE
Confidence 56677777654 35788898765422 22211 11111112223566667776543 467788754 22
Q ss_pred eEEEEec------CCCceEEEEEccCCCEEEEEcCC----CeEEEEECCCCee
Q 011924 382 SVAVLKG------NLGAIRSIRYTSDGRYMATAEPA----DFVHVYDVKSGYE 424 (475)
Q Consensus 382 ~~~~~~~------~~~~v~~l~~spdg~~la~~~~d----g~i~iwd~~~~~~ 424 (475)
-..+.. ..... .++ .-++++++.++.+ ..|.+||+.+..-
T Consensus 306 -W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 306 -WFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred -EEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 111111 11111 121 2357777777654 4699999987654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 475 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.98 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.76 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.65 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.65 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.64 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.63 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.63 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.62 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.53 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.52 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.52 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.51 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.51 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.5 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.48 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.48 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.48 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.46 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.44 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.43 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.43 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.41 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.4 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.4 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.37 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.37 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.34 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.34 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.33 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.27 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.24 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.21 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.19 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.18 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.15 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.15 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.14 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.12 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.08 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.07 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.06 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.05 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.05 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.04 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.04 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.04 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.02 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.0 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.0 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.91 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.9 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.88 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.85 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.85 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.83 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.79 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.78 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.73 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.72 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.72 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.68 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.65 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.65 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.65 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.63 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.62 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.57 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.54 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.53 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.46 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.45 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.45 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.45 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.44 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.44 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.43 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.38 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.38 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.33 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.32 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.3 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.29 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.28 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.25 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.22 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.2 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.15 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.1 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.09 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.07 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.05 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.02 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.95 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.93 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.85 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.85 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.84 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.83 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.8 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.8 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.77 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.76 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.74 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.68 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.68 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.66 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.66 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.65 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.6 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.6 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.57 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.56 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.47 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.43 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.35 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.24 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.21 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.21 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.15 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.15 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.14 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.14 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.1 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.09 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.06 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.05 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.04 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.98 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.98 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.93 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.87 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.87 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.85 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.84 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.76 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.62 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.55 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.5 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.36 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.04 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.64 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.41 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.39 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.44 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.04 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.63 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 93.54 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.15 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.54 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.48 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.21 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.58 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 87.27 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 85.2 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 83.46 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 80.95 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 80.53 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=307.91 Aligned_cols=265 Identities=16% Similarity=0.191 Sum_probs=237.5
Q ss_pred cceeEEEEEE------cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 188 TQTQVSTLAV------KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 188 ~~~~v~~l~~------~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
+...|.+++| ++.+|++|+.||+|++|++...... ....+.+|...|.++++ ++++.. +++++.|++|++
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~--~~~~~~-l~s~s~D~~i~l 106 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDI--SHTLPI-AASSSLDAHIRL 106 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEE--CSSSSE-EEEEETTSEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEE--CCCCCE-EEEEeCCCcEEE
Confidence 3457999998 2568999999999999999765432 23456789999999999 999985 999999999999
Q ss_pred EECCCCeeeeeee-c---cccEEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCC
Q 011924 262 FDMGKYQLSKHFR-F---PWPVNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNP 327 (475)
Q Consensus 262 wd~~~~~~~~~~~-~---~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg 327 (475)
||+.+++.+..+. + ...+.|+|++..++ .+++|+..+++...... .+.+++|+|+|++|++++.|+
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence 9999999888776 2 34577999999886 68999999887765544 578999999999999999999
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE
Q 011924 328 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~ 407 (475)
.|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|+|||++. ...+..+.+|...|.+++|+|+|++|++
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999987 7788899999999999999999999999
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++.|+.|+|||+.++.++..+..|.+.|.+++|+|+|++|++++.|+++.
T Consensus 266 ~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999999999999999999998874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=310.38 Aligned_cols=270 Identities=17% Similarity=0.242 Sum_probs=239.9
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+.|.+....++.. .++.|.+|+..+++....+. + +...|.+++| ++++|++|+.||+
T Consensus 112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~----------------h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--G----------------HTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--C----------------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--c----------------cCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 344477766666664 57899999988876554332 1 2346899999 7899999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|++|++..... ...+.+|...|.+++| +|+++. +++|+.|++|++||+.++.++..+. |...+.
T Consensus 174 i~iwd~~~~~~---~~~~~~h~~~V~~v~~--~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~--------- 238 (410)
T 1vyh_C 174 IKLWDFQGFEC---IRTMHGHDHNVSSVSI--MPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--------- 238 (410)
T ss_dssp CCEEETTSSCE---EECCCCCSSCEEEEEE--CSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE---------
T ss_pred EEEEeCCCCce---eEEEcCCCCCEEEEEE--eCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEE---------
Confidence 99999976443 3667789999999999 999986 9999999999999999999888887 777888
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC-----------
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN----------- 358 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~----------- 358 (475)
+++++|+|.+|++++.|+.|++||+++++....+.+|...|.+++|+|+
T Consensus 239 --------------------~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 239 --------------------MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp --------------------EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred --------------------EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence 9999999999999999999999999999999999999999999999996
Q ss_pred ---------CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 359 ---------GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 359 ---------g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
+.+|++|+.|++|++||+++ +.++..+.+|...|++++|+|+|++|++|+.|+.|+|||+.++.++..+.
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 67899999999999999987 78899999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 430 DFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 430 ~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|.+.|.+++|+|++.+|++|+.|+++.
T Consensus 378 ~h~~~v~~l~~~~~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVK 405 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 9999999999999999999999998875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=295.75 Aligned_cols=272 Identities=20% Similarity=0.280 Sum_probs=235.2
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+.|+++...++.. .++.|++|+..+++....+.. +...|.+++| ++++|++|+.||.
T Consensus 59 ~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~------------------~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 59 YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL------------------RSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC------------------SSSCEEEEEECTTSSEEEEEETTCE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec------------------CCccEEEEEECCCCCEEEEEeCCCe
Confidence 445577777767664 579999999887765444321 2236888888 8999999999999
Q ss_pred EEEEeCCCCCc-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceE
Q 011924 211 LICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCII 288 (475)
Q Consensus 211 i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l 288 (475)
|++|++..... ........+|.+.|.++.| ++++. +++++.|++|++||+.+++.+..+. |...|.
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~-------- 188 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM-------- 188 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEE--EETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEE--------
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEE--CCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceE--------
Confidence 99999976542 2234556789999999999 77763 8889999999999999999888887 788899
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 368 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d 368 (475)
+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|
T Consensus 189 ---------------------~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 189 ---------------------SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ---------------------EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------------------EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCe
Q 011924 369 KTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 446 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~ 446 (475)
++|++||++. .+.+..+.. +...|++++|+|+|++|++|+.|+.|++||+.++..+..+.+|.+.|.+++|+|+|.+
T Consensus 248 ~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 248 ATCRLFDLRA-DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp SCEEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSC
T ss_pred CcEEEEECCC-CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCE
Confidence 9999999987 566666543 2347999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcc
Q 011924 447 LFIGVWDRTYG 457 (475)
Q Consensus 447 l~~~~~D~~~~ 457 (475)
|++|+.|+++.
T Consensus 327 l~s~s~D~~i~ 337 (340)
T 1got_B 327 VATGSWDSFLK 337 (340)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEcCCccEE
Confidence 99999999875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=300.14 Aligned_cols=284 Identities=17% Similarity=0.213 Sum_probs=226.7
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceE
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGEL 211 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i 211 (475)
+..+.|++++..|...++..+++|+.. ..++... ...+...... ....+...|.+++| ..+.|++|+.||.|
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~----~~~~~~~-~~~~~~~~~~--~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGS----LWLFKDP-CAAPNEGFCS--AGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEE----EEEESSG-GGTTCGGGCS--EEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEEeCCceEEeece----eeeeccc-cccCCcceee--eeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 445568888887777777777778631 1111110 0111110000 11122357999999 66789999999999
Q ss_pred EEEeCCCCCceEEE-eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 212 ICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 212 ~vw~~~~~~~~~~~-~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
++||+...+..... ....+|...|++++| +|+|+. |++|+.|++|++||+.+++++..+. |...|.
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~--spdg~~-l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~--------- 173 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSV--LSSGTQ-AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT--------- 173 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEE---------
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEE--CCCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCcCCceE---------
Confidence 99999877654332 345689999999999 999986 9999999999999999999998887 888999
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEEec-CCCEEEEE
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHP-NGVTFATG 365 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp-~g~~l~t~ 365 (475)
+++|+|++ .+|++++.|+.|++||++++++...+. .|...+.+++|+| ++++|++|
T Consensus 174 --------------------~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 174 --------------------CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp --------------------EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred --------------------EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 99999987 478999999999999999999888775 3556799999999 56789999
Q ss_pred eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 366 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
+.|++|+|||+++ ++++..+.+|...|++++|+|+| ++||+|+.|++|+|||+.+++. ..+.+|.+.|.+++|+|++
T Consensus 234 ~~dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 234 DENGTVSLVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLN 311 (344)
T ss_dssp ETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSS
T ss_pred ccCCcEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCC
Confidence 9999999999987 78899999999999999999998 6899999999999999998865 4577899999999999999
Q ss_pred Ce-EEEEEecCCcc
Q 011924 445 ES-LFIGVWDRTYG 457 (475)
Q Consensus 445 ~~-l~~~~~D~~~~ 457 (475)
+. |++|++|+++.
T Consensus 312 ~~llas~s~D~~v~ 325 (344)
T 4gqb_B 312 HSLLTTVGWDHQVV 325 (344)
T ss_dssp TTEEEEEETTSCEE
T ss_pred CeEEEEEcCCCeEE
Confidence 76 55789999875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=291.53 Aligned_cols=279 Identities=20% Similarity=0.293 Sum_probs=235.0
Q ss_pred eeeccc-ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEE
Q 011924 128 ILHFQL-RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV 203 (475)
Q Consensus 128 ~~h~~l-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lv 203 (475)
..|... ..+.|.++...|+.. .++.|++|+..+++....+.. +...|.+++| ++.+|+
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------------------~~~~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM------------------PCTWVMACAYAPSGCAIA 122 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC------------------SSSCCCEEEECTTSSEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec------------------CCCCEEEEEECCCCCEEE
Confidence 345544 344477777777774 579999999887765544332 1235777888 899999
Q ss_pred EEecCceEEEEeCCCCCc---eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccE
Q 011924 204 AGGFQGELICKHLDRPGV---SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPV 279 (475)
Q Consensus 204 sg~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v 279 (475)
+|+.||.+++|++..... .........|...|.++.| +|++.. +++++.|++|++||+++++++..+. |...+
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE--CSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE--eCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence 999999999999864321 1112344578899999999 999986 8999999999999999999988887 77888
Q ss_pred EeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 280 NVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 280 ~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
. +++|+| +|++|++++.|+.|++||+++++++..+.+|...|.+++|+|
T Consensus 200 ~-----------------------------~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 200 L-----------------------------CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp E-----------------------------EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred E-----------------------------EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 8 899987 578999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI 435 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 435 (475)
++++|++|+.|++|++||++. .+.+..+..+ ...+.+++|+|+|++|++|+.|+.|+|||+.++..+..+.+|.+.|
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence 999999999999999999987 5666666543 3478999999999999999999999999999999998999999999
Q ss_pred EEEEEcCCCCeEEEEEecCCcc
Q 011924 436 SGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.+++|+|+|++|++|+.|+++.
T Consensus 330 ~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 330 STLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp EEEEECTTSSCEEEEETTSEEE
T ss_pred EEEEECCCCCEEEEEcCCCCEE
Confidence 9999999999999999998774
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=294.94 Aligned_cols=291 Identities=17% Similarity=0.200 Sum_probs=238.7
Q ss_pred eeccc-ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcc---ccccceeEEEEEE--cCcEE
Q 011924 129 LHFQL-RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLL---EGFTQTQVSTLAV--KDKLL 202 (475)
Q Consensus 129 ~h~~l-r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~--~~~~l 202 (475)
.|... ..+.|+++...|.+.++..+.+|+..+++....+.. +.... ..+..+. .......|.+++| ++++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD--DSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecC--ccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence 35443 445588888888888889999999888766544322 11000 0011111 0112235899999 89999
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEec
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVS 282 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s 282 (475)
++|+.||.|++|++...... ..+.+|...|.+++| +|++.. |++++.|++|++||+.+++....+.+...+.
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~--~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-- 210 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDY--FPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-- 210 (393)
T ss_dssp EEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEE--
T ss_pred EEEcCCCeEEEEECCCCcEE---EEEccCCCCEEEEEE--cCCCCE-EEEecCCCcEEEEECCCCeeEEEEEcCCCcE--
Confidence 99999999999999865433 566789999999999 999986 8999999999999999999888888777888
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEe-------ecCCCCeEEEE
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL-------CGHLDFSFASA 354 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l-------~~h~~~v~~~~ 354 (475)
+++|+| ++++|++++.|+.|++||+++++.+..+ .+|...|.+++
T Consensus 211 ---------------------------~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 211 ---------------------------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp ---------------------------EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred ---------------------------EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 999999 9999999999999999999999888777 57999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC-----------CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNL-----------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~-----------~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
|+|++++|++|+.|++|++||++.. ..+...+.+|...|.+++|+|++++|++|+.|+.|++||+.++.
T Consensus 264 ~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 9999999999999999999999752 23566788899999999999999999999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEcC------CCCeEEEEEecCCcc
Q 011924 424 EKEQEIDFFGEISGISFSP------DTESLFIGVWDRTYG 457 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fsp------dg~~l~~~~~D~~~~ 457 (475)
.+..+.+|.+.|.+++|+| ++++|++|+.|+++.
T Consensus 344 ~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 344 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 9999999999999999986 688999999999874
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=282.92 Aligned_cols=268 Identities=12% Similarity=0.113 Sum_probs=227.9
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
.+.+.|+++...|+.. .++.|.+|+..++.....+.. +..+|.+++| ++++|++|+.||
T Consensus 16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV------------------TETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC------------------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec------------------cCCcEEEEEEeCCCCEEEEECCCC
Confidence 3555577777777764 579999999887755443321 2236888888 899999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-eeeeeee-ccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLSKHFR-FPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~s~~~~~ 287 (475)
.|++|++.+.... ..+..|...|.+++| +|+++. |++|+.|++|++||++++ .....+. |...|.
T Consensus 78 ~i~vwd~~~~~~~---~~~~~h~~~v~~~~~--~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~------- 144 (304)
T 2ynn_A 78 RIRVFNYNTGEKV---VDFEAHPDYIRSIAV--HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM------- 144 (304)
T ss_dssp EEEEEETTTCCEE---EEEECCSSCEEEEEE--CSSSSE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE-------
T ss_pred EEEEEECCCCcEE---EEEeCCCCcEEEEEE--cCCCCE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEE-------
Confidence 9999999876544 556789999999999 999986 999999999999999876 4445554 778888
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEEec--CCCEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHP--NGVTFA 363 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp--~g~~l~ 363 (475)
+++|+| ++.+|++++.|+.|++||++++.+...+. +|...+..++|+| ++.+|+
T Consensus 145 ----------------------~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 145 ----------------------CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp ----------------------EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred ----------------------EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 999999 68999999999999999999887766654 5668899999987 778999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
+|+.|++|++||+++ ++++..+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++....+..|...+.+++|+|+
T Consensus 203 s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EEcCCCeEEEEeCCC-CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 999999999999987 7899999999999999999999999999999999999999999999999889999999999998
Q ss_pred CC--eEEEEEecC
Q 011924 444 TE--SLFIGVWDR 454 (475)
Q Consensus 444 g~--~l~~~~~D~ 454 (475)
+. +|++|+.|+
T Consensus 282 ~~~~~~asg~~~g 294 (304)
T 2ynn_A 282 GRKNYIASGFDNG 294 (304)
T ss_dssp CGGGCEEEEETTE
T ss_pred CCceEEEEecCCc
Confidence 85 577777665
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=284.65 Aligned_cols=233 Identities=17% Similarity=0.235 Sum_probs=208.3
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|.+++| ++.+|++|+.||.|++|++.+.... ..+..|...|.++.| +|+++. |++|+.|++|++||+.++
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~---~~~~~~~~~v~~~~~--~~~~~~-l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV---RSIQVTETPVRAGKF--IARKNW-IIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEE--EGGGTE-EEEEETTSEEEEEETTTC
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee---EEeeccCCcEEEEEE--eCCCCE-EEEECCCCEEEEEECCCC
Confidence 47999999 8999999999999999999865433 556678889999999 999986 999999999999999999
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEeec
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCG 345 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~ 345 (475)
+.+..+. |...|. +++|+|++++|++++.|+.|++||++++ .....+.+
T Consensus 88 ~~~~~~~~h~~~v~-----------------------------~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 88 EKVVDFEAHPDYIR-----------------------------SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp CEEEEEECCSSCEE-----------------------------EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred cEEEEEeCCCCcEE-----------------------------EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9888887 888899 9999999999999999999999999887 45677899
Q ss_pred CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc--CCCEEEEEcCCCeEEEEECCCC
Q 011924 346 HLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS--DGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 346 h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~la~~~~dg~i~iwd~~~~ 422 (475)
|...|.+++|+| ++.+|++|+.|++|++||++..........++...+..+.|+| ++++|++|+.|+.|+|||++++
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence 999999999999 6899999999999999999874444444445667899999987 7789999999999999999999
Q ss_pred eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 423 YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 423 ~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.++..+.+|...|..++|+|++++|++|+.|+++.
T Consensus 219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~ 253 (304)
T 2ynn_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (304)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999999999999999999998874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=296.17 Aligned_cols=234 Identities=15% Similarity=0.270 Sum_probs=217.6
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+..+|++++| ++.+|++|+.||.|++|++.+.... ..+.+|...|.+++| +|+++. |++|+.|++|++||+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---~~l~~h~~~V~~v~~--~~~~~~-l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISF--DHSGKL-LASCSADMTIKLWDFQ 180 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSCCCEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---EEEeccCCcEEEEEE--cCCCCE-EEEEeCCCeEEEEeCC
Confidence 4458999999 7899999999999999999876654 566789999999999 999985 9999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
+++++..+. |...|. +++|+|++++|++++.|+.|++||++++.++..+.
T Consensus 181 ~~~~~~~~~~h~~~V~-----------------------------~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVS-----------------------------SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp SSCEEECCCCCSSCEE-----------------------------EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCceeEEEcCCCCCEE-----------------------------EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 998888776 788899 99999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC--------------------CCE
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD--------------------GRY 404 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd--------------------g~~ 404 (475)
+|...|.+++|+|++++|++|+.|++|++||++. ..+...+.+|...|.+++|+|+ |.+
T Consensus 232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 9999999999999999999999999999999987 7888899999999999999996 779
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++|+.|+.|++||+.++.++..+.+|.+.|.+++|+|+|++|++|+.|+++.
T Consensus 311 l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred EEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999999999999999999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=295.95 Aligned_cols=279 Identities=20% Similarity=0.279 Sum_probs=230.2
Q ss_pred eecc-cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEE
Q 011924 129 LHFQ-LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 204 (475)
Q Consensus 129 ~h~~-lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvs 204 (475)
.|.. ...+.|+++...|+.. .++.|++|+..+++....+.. | ...|.+++| ++++|++
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--h----------------~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL--H----------------CPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC--C----------------CTTCCCCEECTTSSEEEE
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec--C----------------CCCEEEEEECCCCCEEEE
Confidence 3443 3445588887777775 579999999888765544332 1 124666777 8999999
Q ss_pred EecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee------
Q 011924 205 GGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR------ 274 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~------ 274 (475)
|+.|+.+++|++.... .......+.+|.+.+.++.| +|++...|++|+.|++|++||+.+++.+..+.
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 9999999999986432 11112456789999999988 88765569999999999999999998877662
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECC-CCceEEEeecCCCCeEE
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFA 352 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~~~v~~ 352 (475)
|...+. +++|+| ++++|++|+.|+.|++||++ .++.+..+.+|...|.+
T Consensus 204 h~~~v~-----------------------------~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 204 HTADVL-----------------------------SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp CCSCEE-----------------------------EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred CccCeE-----------------------------EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence 455677 899987 89999999999999999998 56788899999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-------CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
++|+|++++|++|+.|++|++||+++ +.++..+..+. ..|++++|+|+|++|++|+.||.|+|||+.++..+
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 99999999999999999999999987 67777776533 24899999999999999999999999999988877
Q ss_pred EEE----eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 426 EQE----IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 426 ~~~----~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+ ..|.+.|.+++|+|+|++|++|++|+++.
T Consensus 334 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 766 46889999999999999999999999874
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=290.42 Aligned_cols=277 Identities=16% Similarity=0.242 Sum_probs=218.7
Q ss_pred cceeEEecCCCeEEEec-------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEE
Q 011924 133 LRNLVWATSKHDVYLMS-------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVA 204 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~-------~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvs 204 (475)
++.+.|++++..|...+ ++.+.+|+..++.....+.. ....+...|.+++| ..+.+++
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~V~~~~~s~d~~~l~ 110 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT--------------AGVQTEAGVTDVAWVSEKGILV 110 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS--------------EEEECSSCEEEEEEETTTEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec--------------ccCCCCCCEEEEEEcCCCCEEE
Confidence 34455888888777765 45677777655432110000 00112346999999 5556778
Q ss_pred EecCceEEEEeCCCCCceEE-EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEec
Q 011924 205 GGFQGELICKHLDRPGVSFC-SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVS 282 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s 282 (475)
++.+|+|++|++...+.... .....+|...|.+++| +|+|+. |++++.|++|++||+.+++.+..+. |...+.
T Consensus 111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~--spdg~~-l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~-- 185 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV--FSDGTQ-AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-- 185 (357)
T ss_dssp EETTSCEEEC--------CCCCEEECCCSSCEEEEEE--CSSSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEE--
T ss_pred EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE--CCCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE--
Confidence 88999999999976553321 1234578999999999 999986 9999999999999999999988887 788899
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEEecC-
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPN- 358 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~- 358 (475)
+++|+|++. ++++++.|+.|++||+++++++..+. .|...+.+++|+|+
T Consensus 186 ---------------------------~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 186 ---------------------------CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp ---------------------------EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS
T ss_pred ---------------------------EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc
Confidence 999999875 78899999999999999988776554 46778999999996
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
+.+|++|+.|++|++||+++ .+++..+.+|...|++++|+|++ ++||+|+.|++|+|||+++++.+. ...|.+.|++
T Consensus 239 ~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~ 316 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTG 316 (357)
T ss_dssp TTEEEEEESSSCEEEEESSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEE
T ss_pred cceEEEeecccceeEEECCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEE
Confidence 57899999999999999987 78889999999999999999987 689999999999999999987654 4589999999
Q ss_pred EEEcC-CCCeEEEEEecCCcc
Q 011924 438 ISFSP-DTESLFIGVWDRTYG 457 (475)
Q Consensus 438 l~fsp-dg~~l~~~~~D~~~~ 457 (475)
++|+| ++.+|++++.|+++.
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEE
T ss_pred EEEeCCCCCEEEEEcCCCeEE
Confidence 99999 899999999999875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=273.60 Aligned_cols=263 Identities=16% Similarity=0.214 Sum_probs=221.2
Q ss_pred ceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCc--eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 189 ~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
...|.++++ .+++|++|+.||+|++|++..... ..+...+.+|...|.+++| +|+|+. |++++.|++|++||
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~dg~~-l~s~s~D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL--TADGAY-ALSASWDKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE--CCCCCE-EEEEeCCCEEEEEE
Confidence 347999999 347999999999999999864432 2334567889999999999 999986 99999999999999
Q ss_pred CCCCeeeeeee-cccc---EEeccCCceEE------EEEEeecccceEEEE---eeeeeeEEECCC------CcEEEEEe
Q 011924 264 MGKYQLSKHFR-FPWP---VNVSSSYCIIL------LCRLLNFMTEKVIIC---LLCLQHSSQSPD------GKLLIIVG 324 (475)
Q Consensus 264 ~~~~~~~~~~~-~~~~---v~~s~~~~~l~------~~~v~d~~~~~~~~~---~~~i~~~~~sp~------g~~l~~~~ 324 (475)
+.+++.+..+. |..+ +.|++++..++ .+++||......... ...+.+++++|. +..+++++
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 99999888876 5544 44889888875 589999975443322 125778999985 45899999
Q ss_pred CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 325 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 325 ~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
.|+.|++||+++++....+.+|...|.+++|+|++++|++|+.|++|+|||++. .+++..+..+ ..|.+++|+|+|.+
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQ-DEVFSLAFSPNRYW 251 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECC-SCEEEEEECSSSSE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCC-CcEEEEEEcCCCCE
Confidence 999999999999999999999999999999999999999999999999999987 7778888764 58999999999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEec--------cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEID--------FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++++.+ .+++|++..+..+..+.. +...+.+++|+|||++|++|+.|+++.
T Consensus 252 la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 252 LAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp EEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 9998865 599999988776665543 346789999999999999999999874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=276.04 Aligned_cols=262 Identities=17% Similarity=0.168 Sum_probs=216.1
Q ss_pred eeEEEEEE--------cCcEEEEEecCceEEEEeCCCCC----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC
Q 011924 190 TQVSTLAV--------KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (475)
Q Consensus 190 ~~v~~l~~--------~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg 257 (475)
..|+++++ ++++|++|+.||+|++|++.... ...+...+.+|...|.+++| +|++.. +++++.|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--~~~~~~-l~s~s~D~ 98 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENCF-AISSSWDK 98 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE--CSSTTE-EEEEETTS
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE--CCCCCE-EEEEcCCC
Confidence 46889987 77899999999999999987543 22334667889999999999 999986 89999999
Q ss_pred eEEEEECCCCeeeeeee-cccc---EEeccCCceEE------EEEEeecccceEEEE------eeeeeeEEECCCC----
Q 011924 258 GVRDFDMGKYQLSKHFR-FPWP---VNVSSSYCIIL------LCRLLNFMTEKVIIC------LLCLQHSSQSPDG---- 317 (475)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~~~~---v~~s~~~~~l~------~~~v~d~~~~~~~~~------~~~i~~~~~sp~g---- 317 (475)
+|++||+.+++.+..+. |... +.|+|++..++ .+++||......... ...+.+++|+|++
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence 99999999998888776 5544 55999998885 589999975443322 1257899999987
Q ss_pred ------cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC
Q 011924 318 ------KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 318 ------~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
.+|++++.|+.|++|| ..++....+.+|...|.+++|+|+|++|++|+.|++|++||++....+...+. +..
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~ 256 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGS 256 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSS
T ss_pred ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCC
Confidence 7899999999999999 45677788999999999999999999999999999999999965455555553 345
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE--EEe-----------ccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE--QEI-----------DFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|.+++|+|++++|++++ |+.|++||+.++.... .+. +|...|.+++|+|+|++|++|+.|+++.
T Consensus 257 ~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334 (343)
T ss_dssp CEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEE
T ss_pred cEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEE
Confidence 799999999999887664 7779999998765433 332 4677899999999999999999998774
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=290.19 Aligned_cols=292 Identities=19% Similarity=0.292 Sum_probs=241.5
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+.+.++...++.. .++.+.+|+.. ++.... +.+ +...|.++++ ++.+|++++.+|.
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~--~~~----------------h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQT--LTG----------------HSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE--ECC----------------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEE--Eec----------------CCCCeEEEEECCCCCEEEEEeCCCe
Confidence 344466666666654 56788999853 322222 111 2246888888 7899999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccc---cEEeccCCc
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPW---PVNVSSSYC 286 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~---~v~~s~~~~ 286 (475)
|++|++.... ......|...+.++++ +|+|+. +++++.|+.|++|+. +++.+..+. +.. .+.|+|++.
T Consensus 327 i~~w~~~~~~----~~~~~~~~~~v~~~~~--s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 327 VKLWNRNGQH----LQTLTGHSSSVWGVAF--SPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp EEEEETTSCE----EEEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEEeCCCCe----eEEEeCCCCCEEEEEE--CCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC
Confidence 9999986432 2455678889999999 999986 899999999999996 455555555 444 455999998
Q ss_pred eEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 287 IIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 287 ~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
.++ .+++|+.. ++...... .|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+
T Consensus 399 ~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 399 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp CEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 885 58999954 44444333 6789999999999999999999999996 678889999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
|++++|++++.|++|++||. + ++++..+.+|...|++++|+|+|++||+++.|+.|+|||. +++.+..+.+|.+.|.
T Consensus 477 pd~~~las~~~d~~i~iw~~-~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 553 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-T-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEeCCCEEEEEcC-C-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence 99999999999999999996 3 6889999999999999999999999999999999999995 6788889999999999
Q ss_pred EEEEcCCCCeEEEEEecCCcc
Q 011924 437 GISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++|+|||++|++++.|+++.
T Consensus 554 ~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 554 GVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEE
T ss_pred EEEEcCCCCEEEEEeCCCEEE
Confidence 999999999999999998864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=276.14 Aligned_cols=277 Identities=18% Similarity=0.206 Sum_probs=222.2
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
...+.|+++...|... .++.|++|+..++.......+. ..+...|.+++| ++++|++|+.||
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~---------------~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS---------------EGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC---------------SSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec---------------cccCCcEEEEEECCCCCEEEEEECCC
Confidence 4556688888777775 5789999997766432221110 113347999999 889999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe---eeeeee-ccccEEeccCC
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---LSKHFR-FPWPVNVSSSY 285 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~s~~~ 285 (475)
.+++|++..... .+...+.+|...|.+++| +|+++. |++++.|++|++||+..+. ++..+. +...|.
T Consensus 84 ~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~--sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~----- 154 (345)
T 3fm0_A 84 TTCIWKKNQDDF-ECVTTLEGHENEVKSVAW--APSGNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK----- 154 (345)
T ss_dssp CEEEEEECCC-E-EEEEEECCCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE-----
T ss_pred cEEEEEccCCCe-EEEEEccCCCCCceEEEE--eCCCCE-EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE-----
Confidence 999999876543 234667789999999999 999986 9999999999999997653 333443 677788
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEEecCCCEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|++++|++++.|+.|++||+++++ +...+.+|...|.+++|+|+|++|+
T Consensus 155 ------------------------~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 155 ------------------------HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp ------------------------EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ------------------------EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 99999999999999999999999998775 4578899999999999999999999
Q ss_pred EEeCCCeEEEEECCCCC--------------ceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee----
Q 011924 364 TGNQDKTCRIWDLRNLS--------------ESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---- 424 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~--------------~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~---- 424 (475)
+++.|++|+|||..... .++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+..
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 99999999999974321 23444554 778999999999999999999999999999865421
Q ss_pred ----E-EEEeccCCCeEEEEEcCCCC-eEEEEEecCCcc
Q 011924 425 ----K-EQEIDFFGEISGISFSPDTE-SLFIGVWDRTYG 457 (475)
Q Consensus 425 ----~-~~~~~~~~~i~~l~fspdg~-~l~~~~~D~~~~ 457 (475)
. .....|.+.|.+++|+|++. +|++|+.|+++.
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 1 11236889999999999984 899999999874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=300.10 Aligned_cols=298 Identities=10% Similarity=0.095 Sum_probs=232.7
Q ss_pred ceeEEecCCC-eEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 134 RNLVWATSKH-DVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 134 r~l~~~~~~~-~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
+.+.|.+... .+.. ..++.+++|+..+.+.... +.+ +...|.+++| ++++|++|+.||
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--l~~----------------H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--FGE----------------HTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--ECC----------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--ecc----------------ccCceEEEEECCCCCEEEEEECCC
Confidence 3444666654 3444 4678999999765443322 222 2346999999 899999999999
Q ss_pred eEEEEeCCCCCceEEEeee-c------CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--------
Q 011924 210 ELICKHLDRPGVSFCSRTT-Y------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-------- 274 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~-~------~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------- 274 (475)
.|++|++...... ..+ . .|.+.|.+++| +|+|+. |++++.|++|++||+.+++++..+.
T Consensus 213 ~i~lwd~~~g~~~---~~~~~~~~~~~~h~~~V~~v~~--spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 213 TIVLYNGVDGTKT---GVFEDDSLKNVAHSGSVFGLTW--SPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp CEEEEETTTCCEE---EECBCTTSSSCSSSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred cEEEEECCCCcEe---eeeccccccccccCCCEEEEEE--CCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 9999998765543 222 2 68999999999 999986 9999999999999999877654432
Q ss_pred ------------------------------------ccc---cEEeccCCceEE------EEEEeecccceEEEEe----
Q 011924 275 ------------------------------------FPW---PVNVSSSYCIIL------LCRLLNFMTEKVIICL---- 305 (475)
Q Consensus 275 ------------------------------------~~~---~v~~s~~~~~l~------~~~v~d~~~~~~~~~~---- 305 (475)
|.. .+.|+|++..++ .+++||..+++.....
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 222 345888888885 4788887654321110
Q ss_pred --------------------------------------------------------------------------------
Q 011924 306 -------------------------------------------------------------------------------- 305 (475)
Q Consensus 306 -------------------------------------------------------------------------------- 305 (475)
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence
Q ss_pred --eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc
Q 011924 306 --LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 381 (475)
Q Consensus 306 --~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~ 381 (475)
..+.+++|+|+|++|++|+.|+.|++||+.++.. +.. .+|...|.+++|+|+|++|++++.|++|++||+.+..+
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 1246899999999999999999999999987653 233 67999999999999999999999999999999976344
Q ss_pred eEEE--EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee-E-EEEecc-CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 382 SVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-K-EQEIDF-FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 382 ~~~~--~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~-~-~~~~~~-~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.+.. +.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. + ..+.+| .+.|.+++|+|+++ |++++.|+++
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i 604 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNI 604 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCE
T ss_pred eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCE
Confidence 4433 344899999999999999999999999999999987653 3 445578 78999999999998 9999999987
Q ss_pred c
Q 011924 457 G 457 (475)
Q Consensus 457 ~ 457 (475)
+
T Consensus 605 ~ 605 (611)
T 1nr0_A 605 K 605 (611)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=279.97 Aligned_cols=311 Identities=15% Similarity=0.104 Sum_probs=249.1
Q ss_pred ccceeEEecCCC-eEEEe-cCCeEEEEec----CCCCce----EEEeccCCCCCCCCCCCCccccccceeEEEEEE--cC
Q 011924 132 QLRNLVWATSKH-DVYLM-SHFSVIHWSS----LTSSRS----QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD 199 (475)
Q Consensus 132 ~lr~l~~~~~~~-~v~~~-~~~~v~~w~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~ 199 (475)
.+..+.|.+... .|++. .++.|.+|+. .+++.. ....+..+.... .....+...|++++| ++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS------ASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------------CBCEEEEEECTTS
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc------ccccCCCCceEEEEEcCCC
Confidence 455666887777 66664 4589999998 766620 111111111100 001113448999999 78
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec----
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF---- 275 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---- 275 (475)
++|++|+.+|.|++|+.. ... ...+..|...|.+++| +|+++. |++++.|+.|++||+.+++.+..+..
T Consensus 121 ~~l~~~~~dg~i~i~~~~-~~~---~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNKT-GAL---LNVLNFHRAPIVSVKW--NKDGTH-IISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SEEEEEETTSCEEEEETT-SCE---EEEECCCCSCEEEEEE--CTTSSE-EEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CEEEEEeCCCeEEEEeCC-CCe---eeeccCCCccEEEEEE--CCCCCE-EEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 999999999999999932 222 3456678999999999 999986 88999999999999999888776652
Q ss_pred ---------------cccEEeccCCceEE-----EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 276 ---------------PWPVNVSSSYCIIL-----LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 276 ---------------~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
...+.|++++..+. .+++||..+++...... .+.+++|+|++++|++++.++.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 34455777766553 68999998876654443 6789999999999999999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
||+++++.+..+.+|...+.+++|+|++ ++++++.|+.|++||+++ .+++..+..|...|.+++|+|+|++|++++.|
T Consensus 274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred EECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 9999999999999999999999999999 999999999999999987 78888999999999999999999999999999
Q ss_pred CeEEEEECCCCe--------------------eEEEEeccCC--CeEEEEEcCCCCeEEEEEecCCcc
Q 011924 412 DFVHVYDVKSGY--------------------EKEQEIDFFG--EISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 412 g~i~iwd~~~~~--------------------~~~~~~~~~~--~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.|++||+.++. .+..+..|.. .|.+++|+|++++|++++.|+.+.
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 999999999887 7788888866 999999999999999999998764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=297.45 Aligned_cols=269 Identities=14% Similarity=0.152 Sum_probs=223.9
Q ss_pred eeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEE
Q 011924 135 NLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~ 212 (475)
.+-|+++...|.+..+..+++|+..+++....+ .+ +...|++++| +|++|++|+.||+|+
T Consensus 23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~--~~----------------h~~~v~~~~~spdg~~lasg~~d~~v~ 84 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIY--TE----------------HSHQTTVAKTSPSGYYCASGDVHGNVR 84 (611)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEE--CC----------------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEe--cC----------------CCCceEEEEECCCCcEEEEEeCCCCEE
Confidence 344777778888888889999998765544432 11 2246889988 899999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC----CeEEEEECCCCeeeeeee-ccccEEeccCCce
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCI 287 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d----g~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~ 287 (475)
+||+...... ....+..|.+.|.+++| +|+|+. |++++.+ +.|++||. ++....+. |...|.
T Consensus 85 lWd~~~~~~~-~~~~~~~~~~~v~~v~f--s~dg~~-l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~------- 151 (611)
T 1nr0_A 85 IWDTTQTTHI-LKTTIPVFSGPVKDISW--DSESKR-IAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMN------- 151 (611)
T ss_dssp EEESSSTTCC-EEEEEECSSSCEEEEEE--CTTSCE-EEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEE-------
T ss_pred EeECCCCcce-eeEeecccCCceEEEEE--CCCCCE-EEEEECCCCceeEEEEeeC--CCCcceecCCCCCce-------
Confidence 9999654332 23456678899999999 999997 6666554 46777774 55555555 778888
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
+++|+|++. +|++++.|+.|++||..+++.+..+.+|...|.+++|+|+|++||+|+
T Consensus 152 ----------------------~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 152 ----------------------SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp ----------------------EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 999999987 699999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCceEEEEe-------cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE------------
Q 011924 367 QDKTCRIWDLRNLSESVAVLK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ------------ 427 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~-------~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~------------ 427 (475)
.|++|++||+.+ ++++..+. +|.+.|.+++|+|+|++|++++.|++|+|||+.++..+..
T Consensus 210 ~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 210 GDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp TTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred CCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999976 67777774 7999999999999999999999999999999998765433
Q ss_pred -------------------------------EeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 428 -------------------------------EIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 428 -------------------------------~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.+|...|.+++|+|+|++|++++.|+++.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 236788999999999999999999998875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=274.53 Aligned_cols=231 Identities=17% Similarity=0.257 Sum_probs=203.7
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|.+++| ++++|++|+.||.|++|++...... .....|...|.+++| +|+++. +++++.|+.|++|++.+.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~---~~~~~~~~~v~~~~~--s~~~~~-l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAY--APSGNY-VACGGLDNICSIYNLKTR 129 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE---EEEECSSSCEEEEEE--CTTSSE-EEEEETTCEEEEEETTTC
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc---eEeecCCccEEEEEE--CCCCCE-EEEEeCCCeEEEEECccC
Confidence 47999999 8899999999999999999876544 455678888999999 999986 999999999999999765
Q ss_pred e----eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 268 Q----LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 268 ~----~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
. ....+. |...+. ++.|+|++. +++++.|+.|++||+++++++..
T Consensus 130 ~~~~~~~~~~~~h~~~v~-----------------------------~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLS-----------------------------CCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp SBSCEEEEEEECCSSCEE-----------------------------EEEEEETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred CCcceeEEEecCCCccEE-----------------------------EEEECCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence 2 333444 677788 999998876 88899999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+.+|...|.+++|+|++++|++|+.|++|++||+++ +.++..+.+|...|++++|+|+|++|++|+.|+.|+|||++++
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 999999999999999999999999999999999987 7888999999999999999999999999999999999999998
Q ss_pred eeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 423 YEKEQEID--FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 423 ~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+..+.. +...|.+++|+|+|++|++|+.|+.+.
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence 87766542 235799999999999999999887653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=263.39 Aligned_cols=271 Identities=13% Similarity=0.206 Sum_probs=229.2
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
.+.+.|.++...++.. .++.+.+|+..+++....+. + +...|.+++| ++++|++|+.||
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~----------------h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--G----------------HKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--C----------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--c----------------CCCceEEEEEcCCCCEEEEECCCC
Confidence 3455577777777664 57899999987776544332 1 2346899999 889999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceE
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCII 288 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l 288 (475)
.|++|++...... ..+..|...|.++.| +|+++. +++++.|++|++||+++++.+..+. +..++.
T Consensus 88 ~i~vwd~~~~~~~---~~~~~~~~~v~~~~~--~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-------- 153 (312)
T 4ery_A 88 TLKIWDVSSGKCL---KTLKGHSNYVFCCNF--NPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS-------- 153 (312)
T ss_dssp EEEEEETTTCCEE---EEEECCSSCEEEEEE--CSSSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEE--------
T ss_pred EEEEEECCCCcEE---EEEcCCCCCEEEEEE--cCCCCE-EEEEeCCCcEEEEECCCCEEEEEecCCCCcEE--------
Confidence 9999999876544 556678899999999 999986 9999999999999999998888776 677888
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEEecCCCEEEEEeC
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
+++|+|++++|++++.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.
T Consensus 154 ---------------------~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 154 ---------------------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp ---------------------EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred ---------------------EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999998887764 46678999999999999999999
Q ss_pred CCeEEEEECCCCCceEEEEecCCCceE--EEEE-ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 368 DKTCRIWDLRNLSESVAVLKGNLGAIR--SIRY-TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~-spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
|+.|++||+++ ++++..+.+|...+. ...+ .+++++|++|+.|+.|++||+.++..+..+.+|...|.+++|+|++
T Consensus 213 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 213 DNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp TTEEEEEETTT-TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred CCeEEEEECCC-CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence 99999999987 788888888765432 2234 4688999999999999999999999999999999999999999999
Q ss_pred CeEEEEE--ecCCcc
Q 011924 445 ESLFIGV--WDRTYG 457 (475)
Q Consensus 445 ~~l~~~~--~D~~~~ 457 (475)
++|++++ .|+++.
T Consensus 292 ~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 292 NIIASAALENDKTIK 306 (312)
T ss_dssp SEEEEEECTTTCCEE
T ss_pred CceEEEEccCCccEE
Confidence 9999998 477664
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=269.53 Aligned_cols=264 Identities=16% Similarity=0.265 Sum_probs=221.9
Q ss_pred ceeEEecC----CCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe
Q 011924 134 RNLVWATS----KHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG 206 (475)
Q Consensus 134 r~l~~~~~----~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~ 206 (475)
..+.|++. ...|+. ..++.|++|+...+.......+.|| ...|.++++ ++.++++|+
T Consensus 36 ~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh----------------~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 36 WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH----------------QLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCC----------------SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccC----------------CCCEEEEEECCCCCEEEEEe
Confidence 34446543 234554 4579999999876654444444433 236889998 788999999
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-c---cccEEec
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-F---PWPVNVS 282 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~---~~~v~~s 282 (475)
.||.|++|++...... ..+..+...+.+++| +|+++. |++++.|+.|++|++.+++....+. + ...+.|+
T Consensus 100 ~D~~i~lWd~~~~~~~---~~~~~~~~~~~~~~~--spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQI---KSIDAGPVDAWTLAF--SPDSQY-LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp TTSEEEEEETTTTEEE---EEEECCTTCCCCEEE--CTTSSE-EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred CCCcEEEEECCCCCEE---EEEeCCCccEEEEEE--CCCCCE-EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence 9999999999875543 445567777888999 999986 9999999999999999988777665 2 2356699
Q ss_pred cCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q 011924 283 SSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 283 ~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
|++..++ .+++||..+++.+..+. .|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+
T Consensus 174 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 174 PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence 9999886 58999999998877655 6889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
++|+|++++|++++.|++|+|||+++ ++++..+.+|...|.+++|+|+|++|++++.|+.|+|||+.
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999987 78899999999999999999999999999999999999964
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=275.41 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=201.4
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.|.+++| ++++|++|+.||.|++|++.............+|...|.+++| +|+|+. |++|+.|++|++|++..+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~g~~-l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--SPCGNY-LASASFDATTCIWKKNQDD 94 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEEECCC-
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEE--CCCCCE-EEEEECCCcEEEEEccCCC
Confidence 6888888 8999999999999999999865433333445789999999999 999986 9999999999999997753
Q ss_pred --eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc---eEEE
Q 011924 269 --LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIAS 342 (475)
Q Consensus 269 --~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~ 342 (475)
++..+. |..+|. +++|+|++++|++++.|+.|++||++++. .+..
T Consensus 95 ~~~~~~~~~h~~~v~-----------------------------~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 95 FECVTTLEGHENEVK-----------------------------SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp EEEEEEECCCSSCEE-----------------------------EEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred eEEEEEccCCCCCce-----------------------------EEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 455555 778898 99999999999999999999999998764 4667
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
+.+|...|.+++|+|++++|++++.|++|++||++... .+...+.+|...|++++|+|+|++|++++.|++|+||+...
T Consensus 146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 88999999999999999999999999999999997622 25678889999999999999999999999999999999632
Q ss_pred C---------------eeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 422 G---------------YEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 422 ~---------------~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
. .++..+.+ |...|.+++|+|++..|++++.|+.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE
Confidence 1 22333444 7789999999999999999999988753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=268.78 Aligned_cols=267 Identities=15% Similarity=0.157 Sum_probs=204.5
Q ss_pred eEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCC
Q 011924 144 DVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 144 ~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
.|.. ..++.|++|+..++....+..+. ...+...|.+++| ++++|++|+.||.|++|++....
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~--------------~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLD--------------ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEEC--------------TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEe--------------cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCc
Confidence 4444 45789999998765332221110 0113347999999 88999999999999999985432
Q ss_pred ----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC----Ceeeeeee-ccccEEeccCCceEEEE
Q 011924 221 ----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----YQLSKHFR-FPWPVNVSSSYCIILLC 291 (475)
Q Consensus 221 ----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~----~~~~~~~~-~~~~v~~s~~~~~l~~~ 291 (475)
...+...+.+|...|.+++| +|+|+. |++|+.|++|++||+.. .+++..+. |...|.
T Consensus 92 ~~~~~~~~~~~~~~h~~~V~~v~~--sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~----------- 157 (330)
T 2hes_X 92 DRTFEMDLLAIIEGHENEVKGVAW--SNDGYY-LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK----------- 157 (330)
T ss_dssp ---CCCEEEEEEC----CEEEEEE--CTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE-----------
T ss_pred CccccceeEEEEcCCCCcEEEEEE--CCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE-----------
Confidence 12234566789999999999 999986 99999999999999943 24455555 778888
Q ss_pred EEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC--ceEEEeecCCCCeEEEEEecC--CCEEEEEeC
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDFSFASAWHPN--GVTFATGNQ 367 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~l~~h~~~v~~~~~sp~--g~~l~t~s~ 367 (475)
+++|+|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++|+.
T Consensus 158 ------------------~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 158 ------------------HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp ------------------EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred ------------------EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 9999999999999999999999998876 678899999999999999998 779999999
Q ss_pred CCeEEEEECCCCC-------ceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe--eEEEE-eccCC-Ce
Q 011924 368 DKTCRIWDLRNLS-------ESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY--EKEQE-IDFFG-EI 435 (475)
Q Consensus 368 dg~v~iwd~~~~~-------~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~--~~~~~-~~~~~-~i 435 (475)
|++|++||++... .+...+.. |...|.+++|+|++ +|++++.|+.|+|||..++. ..... ..|.. .|
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceE
Confidence 9999999986421 33445554 88899999999766 78999999999999998774 23232 45776 89
Q ss_pred EEEEEcC--CCCeEEEEEecCCcc
Q 011924 436 SGISFSP--DTESLFIGVWDRTYG 457 (475)
Q Consensus 436 ~~l~fsp--dg~~l~~~~~D~~~~ 457 (475)
.+++|+| ++++|++|+.|+++.
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEE
T ss_pred EEEEEecCCCceEEEEecCCCcEE
Confidence 9999999 789999999998874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=270.36 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=228.5
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..+|++++| ++++|++|+.+|.|++|++...... ..+..|...|.+++| +|+++. |++++.|+.|++||+.+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~--~~~~~~-l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---GTLDGHTGTIWSIDV--DCFTKY-CVTGSADYSIKLWDVSN 105 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE---EEECCCSSCEEEEEE--CTTSSE-EEEEETTTEEEEEETTT
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh---hhhhhcCCcEEEEEE--cCCCCE-EEEEeCCCeEEEEECCC
Confidence 457999999 8899999999999999999876544 566788999999999 999986 89999999999999999
Q ss_pred Ceeeeeeecccc---EEeccCCceEE-----------EEEEeecccceEE-----------EEee------eeeeEEECC
Q 011924 267 YQLSKHFRFPWP---VNVSSSYCIIL-----------LCRLLNFMTEKVI-----------ICLL------CLQHSSQSP 315 (475)
Q Consensus 267 ~~~~~~~~~~~~---v~~s~~~~~l~-----------~~~v~d~~~~~~~-----------~~~~------~i~~~~~sp 315 (475)
++.+..+.+..+ +.|++++..++ .+.+|+...+... .... .+.+++|+|
T Consensus 106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 106 GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 998888875544 45889888773 5788988764311 1111 677999999
Q ss_pred CCcEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE
Q 011924 316 DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 394 (475)
++++|++++.++.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||+++ .+.+..+. +...+.
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~~~ 263 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-TDCPLN 263 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE-CSSCEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec-CCCCce
Confidence 999999999999999999998 788899999999999999999999999999999999999987 67777776 667899
Q ss_pred EEEEccCCCEEEEEcCCC--------------eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 395 SIRYTSDGRYMATAEPAD--------------FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 395 ~l~~spdg~~la~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.++|+|+++++++++.++ .|++||+.++..+..+..|.+.|.+++|+|++++|++++.|+.+.
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp EEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 999999999999999888 899999999999999999999999999999999999999998763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=267.24 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=197.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd 263 (475)
+...|.+++| ++++|++|+.||.|++|++...... +...+.+|.+.|.+++| +++ ++ +|++|+.|++|++||
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~~~~l~gH~~~V~~v~~--s~~~~g~-~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDW--AHPKFGT-ILASCSYDGKVMIWK 83 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-CCEEECCCSSCEEEEEE--CCGGGCS-EEEEEETTTEEEEEE
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-EEEEEccccCCeEEEEe--cCCCcCC-EEEEEcCCCEEEEEE
Confidence 3447999998 8999999999999999999753221 13566789999999999 764 66 499999999999999
Q ss_pred CCCCe--eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCCc
Q 011924 264 MGKYQ--LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 264 ~~~~~--~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
+.+++ .+..+. |...|. +++|+|+ |.+|++++.|+.|++||++++.
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~-----------------------------~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVN-----------------------------SVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEE-----------------------------EEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred cCCCceEEEEEeecCCCcee-----------------------------EEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 98764 333444 677888 9999997 8999999999999999998763
Q ss_pred --eEEEeecCCCCeEEEEEecC-------------CCEEEEEeCCCeEEEEECCCCCc---eEEEEecCCCceEEEEEcc
Q 011924 339 --TIASLCGHLDFSFASAWHPN-------------GVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 339 --~~~~l~~h~~~v~~~~~sp~-------------g~~l~t~s~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp 400 (475)
....+.+|...|.+++|+|+ +++|++|+.|++|+|||++.... ....+.+|...|++++|+|
T Consensus 135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 24577899999999999996 57999999999999999976332 5677889999999999999
Q ss_pred CC---CEEEEEcCCCeEEEEECCCCe---eEEEE--eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 401 DG---RYMATAEPADFVHVYDVKSGY---EKEQE--IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 401 dg---~~la~~~~dg~i~iwd~~~~~---~~~~~--~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++ ++||+++.|++|+|||+.++. ....+ ..|.+.|.+++|+|+|++|++++.|+++.
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 85 899999999999999997642 12222 35778999999999999999999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=281.67 Aligned_cols=304 Identities=19% Similarity=0.308 Sum_probs=246.9
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
.+.+.+.++...|+.. .++.+.+|+.. ++... .+.+ +...|.++++ +++.|++++.++
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~--~~~~----------------~~~~v~~v~~~~d~~~l~~~~~d~ 284 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ--TLTG----------------HSSSVNGVAFRPDGQTIASASDDK 284 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-SCEEE--EECC----------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEE--EEec----------------CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3555677777666664 56889999843 32222 1221 2246888988 889999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc---cEEeccCCc
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW---PVNVSSSYC 286 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~v~~s~~~~ 286 (475)
.|++|+... . ......+|...|.++++ +|+++. +++++.|++|++|++..........+.. .+.|+|++.
T Consensus 285 ~i~~w~~~~-~---~~~~~~~h~~~v~~~~~--~~~~~~-l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 285 TVKLWNRNG-Q---LLQTLTGHSSSVWGVAF--SPDGQT-IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp CEEEEETTS-C---EEEEECCCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEEeCCC-c---EEEEEecCCCCeEEEEE--CCCCCE-EEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCC
Confidence 999999753 2 23556788999999999 999986 8999999999999987655433333433 456899998
Q ss_pred eEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 287 IIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 287 ~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
.++ .+++|+.. ++.+.... .|.+++|+|+|++|++++.|+.|++||. +++.+..+.+|...|.+++|+
T Consensus 358 ~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 358 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 885 58999954 44444433 6889999999999999999999999995 678889999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
|++++|++++.|++|++||. + ++.+..+.+|...|++++|+|+|++|++++.|+.|+||| .++..+..+.+|.+.|.
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~-~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNR-N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512 (577)
T ss_dssp TTSSEEEEEETTSEEEEEET-T-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEcCCCEEEEEEC-C-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEE
Confidence 99999999999999999997 3 678889999999999999999999999999999999999 46788889999999999
Q ss_pred EEEEcCCCCeEEEEEecCCcc------eEEEEEeecc
Q 011924 437 GISFSPDTESLFIGVWDRTYG------SLLEYGRCRN 467 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~~------~ll~~~~~~~ 467 (475)
+++|+|+|++|++++.|+.+. .++....+|.
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~ 549 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 549 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCC
Confidence 999999999999999998764 3445455543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=269.42 Aligned_cols=236 Identities=16% Similarity=0.173 Sum_probs=194.3
Q ss_pred ceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-
Q 011924 189 QTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (475)
Q Consensus 189 ~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~- 266 (475)
..+|.++++...+|++|+.||.|++|++.............. |...|.+++| +|+++. |++++.|++|++|++..
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~--sp~~~~-las~s~D~~v~iw~~~~~ 90 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW--RPHTSL-LAAGSFDSTVSIWAKEES 90 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEE--CTTSSE-EEEEETTSCEEEEEC---
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEE--CCCCCE-EEEEeCCCcEEEEEcccC
Confidence 347999999777999999999999999986543322223234 8999999999 999985 99999999999999853
Q ss_pred ------Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC---
Q 011924 267 ------YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT--- 336 (475)
Q Consensus 267 ------~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~--- 336 (475)
.+.+..+. |...|. +++|+|+|++|++++.|+.|++||++.
T Consensus 91 ~~~~~~~~~~~~~~~h~~~V~-----------------------------~v~~sp~g~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 91 ADRTFEMDLLAIIEGHENEVK-----------------------------GVAWSNDGYYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp ----CCCEEEEEEC----CEE-----------------------------EEEECTTSCEEEEEETTSCEEEEECCTTCC
T ss_pred cCccccceeEEEEcCCCCcEE-----------------------------EEEECCCCCEEEEEeCCCEEEEEeccCCCC
Confidence 23444444 677788 999999999999999999999999953
Q ss_pred -CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-CceEEEEecCCCceEEEEEccC--CCEEEEEcCCC
Q 011924 337 -GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSD--GRYMATAEPAD 412 (475)
Q Consensus 337 -~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spd--g~~la~~~~dg 412 (475)
.+++..+.+|...|.+++|+|++++|++++.|++|++||.+.. .+++..+.+|.+.|.+++|+|+ +.+|++|+.|+
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence 2467788999999999999999999999999999999998752 2578889999999999999998 77999999999
Q ss_pred eEEEEECCCC--------eeEEEEec-cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 413 FVHVYDVKSG--------YEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 413 ~i~iwd~~~~--------~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|+|||+.++ .....+.. |...|.+++|++++ +|++++.|+++.
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~ 274 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLA 274 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEE
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEE
Confidence 9999998754 23334444 88899999999765 899999999875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=270.74 Aligned_cols=241 Identities=15% Similarity=0.107 Sum_probs=198.0
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
+..+.|.++...+....++.|++|+..+++........ ...+...|.+++| ++++|++|+.||.
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~--------------~~~H~~~V~~v~~spdg~~l~sgs~d~~ 150 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFC--------------KYEHDDIVSTVSVLSSGTQAVSGSKDIC 150 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEE--------------EECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecc--------------ccCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 45566777755444467899999999887765443321 0113347999999 8999999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCce
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCI 287 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~ 287 (475)
|++||+.+... ...+.+|...|.+++| +|++..+|++++.|++|++||+++++....+. +...+.
T Consensus 151 i~iwd~~~~~~---~~~~~~h~~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~------- 218 (344)
T 4gqb_B 151 IKVWDLAQQVV---LSSYRAHAAQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT------- 218 (344)
T ss_dssp EEEEETTTTEE---EEEECCCSSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE-------
T ss_pred EEEEECCCCcE---EEEEcCcCCceEEEEe--cCCCCCceeeeccccccccccccccceeeeeecceeeccce-------
Confidence 99999987543 3667789999999999 99987779999999999999999988877664 344566
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCC-CEEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-VTFATG 365 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~t~ 365 (475)
+++|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ ++||+|
T Consensus 219 ----------------------~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 219 ----------------------SLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp ----------------------EEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred ----------------------eeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 999999 56788999999999999999999999999999999999999987 689999
Q ss_pred eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEECCCCe
Q 011924 366 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~~~~~ 423 (475)
+.|++|+|||++. ++ +..+.+|.+.|++++|+|+|+ +|++++.|++|++|++.+..
T Consensus 277 s~D~~i~vwd~~~-~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 277 SEDCSLAVLDSSL-SE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ETTSCEEEECTTC-CE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred eCCCeEEEEECCC-Cc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999999975 44 456789999999999999986 67899999999999998753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=260.01 Aligned_cols=279 Identities=15% Similarity=0.160 Sum_probs=232.7
Q ss_pred eecc-cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 129 LHFQ-LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 129 ~h~~-lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
.|.. ...+.|.++...++...++.+.+|+..++.....+... ....+...|.+++| ++++|++|
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQL-------------DCLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEE-------------ECSCTTSBEEEEEECTTSSEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecc-------------cccCCCCcEEEEEEcCCCCEEEEE
Confidence 3443 35556888888888888999999998765432111000 00113357999999 78999999
Q ss_pred ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccC
Q 011924 206 GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSS 284 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~ 284 (475)
+.+|.|++|++....... ......|...+.+++| +|+++. +++++.|+.|++||+.+++.+..+. +...+.
T Consensus 116 ~~d~~i~~~d~~~~~~~~-~~~~~~~~~~i~~~~~--~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~---- 187 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRI-KAELTSSAPACYALAI--SPDSKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS---- 187 (337)
T ss_dssp ESSSEEEEEECCCC--EE-EEEEECSSSCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEE----
T ss_pred cCCCcEEEEECCCCCcce-eeecccCCCceEEEEE--CCCCCE-EEEEeCCCcEEEEeCCCCceeeeeecccCceE----
Confidence 999999999998765332 3455678888999999 999986 8899999999999999999888877 778888
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
+++|+|++++|++++.++.|++||+++++.+..+. +...+.+++|+|++++|++
T Consensus 188 -------------------------~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 188 -------------------------CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp -------------------------EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred -------------------------EEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEE
Confidence 99999999999999999999999999999888776 7888999999999999999
Q ss_pred EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 365 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 365 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
++.++.|++||++. .+ ...+..|...|.+++|+|+|++|++++.|+.|++||+.++..+.. ..|...|.+++|+|++
T Consensus 242 ~~~~~~i~~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 242 GMESSNVEVLHVNK-PD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDD 318 (337)
T ss_dssp EETTSCEEEEETTS-SC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTS
T ss_pred EcCCCcEEEEECCC-CC-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCC
Confidence 99999999999976 33 456778899999999999999999999999999999999877643 4588999999999999
Q ss_pred CeEEEEEecCCcc
Q 011924 445 ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ~~l~~~~~D~~~~ 457 (475)
++|++++.|+.+.
T Consensus 319 ~~l~~~~~dg~i~ 331 (337)
T 1gxr_A 319 KYIVTGSGDKKAT 331 (337)
T ss_dssp CEEEEEETTSCEE
T ss_pred CEEEEecCCCeEE
Confidence 9999999998774
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=267.06 Aligned_cols=232 Identities=19% Similarity=0.246 Sum_probs=202.9
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|.+++| ++.+|++|+.||.|++|+....... .....|...|.+++| +|+|.. +++++.|+.+++|++...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~---~~~~~~~~~v~~~~~--sp~g~~-lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE---HAVTMPCTWVMACAY--APSGCA-IACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECSSSCCCEEEE--CTTSSE-EEEESTTSEEEEEECCCC
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc---eEEecCCCCEEEEEE--CCCCCE-EEEeeCCCCEEEEEEecc
Confidence 46999999 8899999999999999998766544 344557778999999 999986 999999999999998643
Q ss_pred e------eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 268 Q------LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 268 ~------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
. ....+. |...+. +++|+|++..|++++.|+.|++||+++++++
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~-----------------------------~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLS-----------------------------ACSFTNSDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEE-----------------------------EEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccccccccceeeeccCCcEE-----------------------------EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 1 222333 667777 9999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 341 ASLCGHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
..+.+|...|.+++|+| ++++|++|+.|++|++||+++ ++++..+.+|...|++++|+|+|++|++|+.|++|++||
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999988 578999999999999999987 788999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEecc--CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 419 VKSGYEKEQEIDF--FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 419 ~~~~~~~~~~~~~--~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++++..+..+..+ ...+.+++|+|+|++|++|+.|+++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 9998776665533 34789999999999999999998764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=257.36 Aligned_cols=268 Identities=17% Similarity=0.233 Sum_probs=219.9
Q ss_pred ceeEEEEEE--c-CcEEEEEecCceEEEEeCCCCCc--eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 189 QTQVSTLAV--K-DKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 189 ~~~v~~l~~--~-~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
...|++|+| + +++|++|+.||+|++|++..... ..+...+.+|...|.+++| +|+|+. |++++.|+.|++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~--s~dg~~-l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI--SSDGQF-ALSGSWDGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE--CCCCCE-EEEEcccccceEEe
Confidence 347999999 3 68999999999999999976543 3345667889999999999 999986 99999999999999
Q ss_pred CCCCeeeeeeec----cccEEeccCCceEE------EEEEeecccceEEEEee-----eeeeEEECCC--CcEEEEEeCC
Q 011924 264 MGKYQLSKHFRF----PWPVNVSSSYCIIL------LCRLLNFMTEKVIICLL-----CLQHSSQSPD--GKLLIIVGDN 326 (475)
Q Consensus 264 ~~~~~~~~~~~~----~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~-----~i~~~~~sp~--g~~l~~~~~d 326 (475)
............ .....+++.+..++ .+++||........... .+.+++|+++ ..++++++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 988777665552 22334667777664 47899987765544322 5678888875 4578899999
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEE
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la 406 (475)
+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+++..+..+ ..|.+++|+|++.+++
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGG-DIINALCFSPNRYWLC 272 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECS-SCEEEEEECSSSSEEE
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCC-ceEEeeecCCCCceee
Confidence 9999999999999999999999999999999999999999999999999987 7777777755 5799999999987655
Q ss_pred EEcCCCeEEEEECCCCeeEEEEe---------ccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 407 TAEPADFVHVYDVKSGYEKEQEI---------DFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
++.|+.|+|||++++..+..+. .|...|.+++|+|+|++|++|+.|+.+. +....
T Consensus 273 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~-iW~~~ 336 (340)
T 4aow_A 273 -AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR-VWQVT 336 (340)
T ss_dssp -EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE-EEEEE
T ss_pred -ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE-EEeCC
Confidence 5568999999999887665543 4778999999999999999999999874 33433
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=258.31 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=204.8
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
...|.+++| ++++|++|+.||.|++|++...... .....|...|.+++| +|+++. |++++.|+.|++||+.+
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~h~~~v~~~~~--~~~~~~-l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE---KTISGHKLGISDVAW--SSDSNL-LVSASDDKTLKIWDVSS 96 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTT
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc---hhhccCCCceEEEEE--cCCCCE-EEEECCCCEEEEEECCC
Confidence 347999999 8899999999999999999765543 556788999999999 999986 99999999999999999
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
++.+..+. +...+. +++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 97 ~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 147 (312)
T 4ery_A 97 GKCLKTLKGHSNYVF-----------------------------CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147 (312)
T ss_dssp CCEEEEEECCSSCEE-----------------------------EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CcEEEEEcCCCCCEE-----------------------------EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC
Confidence 99888887 778888 999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
|...|.+++|+|++++|++++.|++|++||+++ ++.+..+. .+...+..++|+|+|++|++++.|+.|++||+.++..
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 999999999999999999999999999999987 55555554 4567899999999999999999999999999999998
Q ss_pred EEEEeccCCCe---EEEEEcCCCCeEEEEEecCCcc
Q 011924 425 KEQEIDFFGEI---SGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 ~~~~~~~~~~i---~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+..+..|...+ ......+++.+|++|+.|+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 88888876543 2333446888999998888763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=286.83 Aligned_cols=264 Identities=17% Similarity=0.221 Sum_probs=221.4
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCc--eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
|...|+++++ ++++|++|+.||+|++|++..... ..+...+.+|...|.+++| +|+++. |++|+.|++|++|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~~g~~-l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL--SSDGQF-ALSGSWDGELRLW 457 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE--CTTSSE-EEEEETTSEEEEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE--CCCCCE-EEEEeCCCcEEEE
Confidence 4457999999 357999999999999999976442 2334567789999999999 999986 9999999999999
Q ss_pred ECCCCeeeeeee-cccc---EEeccCCceEE------EEEEeecccceEEEEe-------eeeeeEEECCCC--cEEEEE
Q 011924 263 DMGKYQLSKHFR-FPWP---VNVSSSYCIIL------LCRLLNFMTEKVIICL-------LCLQHSSQSPDG--KLLIIV 323 (475)
Q Consensus 263 d~~~~~~~~~~~-~~~~---v~~s~~~~~l~------~~~v~d~~~~~~~~~~-------~~i~~~~~sp~g--~~l~~~ 323 (475)
|+.+++....+. |... +.|++++..++ .+++||.......... ..|.+++|+|++ ..|+++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 999998888776 5554 45899998885 5899998765444322 257899999986 689999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC
Q 011924 324 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 324 ~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~ 403 (475)
+.|+.|++||+++++....+.+|.+.|.+++|+|++++|++|+.|++|+|||+++ ++.+..+.. ...|.+++|+|++.
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~-~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEA-NSVIHALCFSPNRY 615 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBC-SSCEEEEEECSSSS
T ss_pred eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecC-CCcEEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999999999999999987 676766654 45799999999999
Q ss_pred EEEEEcCCCeEEEEECCCCeeEEEEeccC-------------------CCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 404 YMATAEPADFVHVYDVKSGYEKEQEIDFF-------------------GEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|++++ ++.|+|||+.++..+..+..+. ..+++++|||+|++|++|+.|+++.
T Consensus 616 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 616 WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687 (694)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence 888776 5569999999988776654321 1378999999999999999998774
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=266.41 Aligned_cols=271 Identities=11% Similarity=0.064 Sum_probs=221.1
Q ss_pred eEEecCCCeEEE-ecCCeEEEEecCCCCc----eEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c----C---cE
Q 011924 136 LVWATSKHDVYL-MSHFSVIHWSSLTSSR----SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K----D---KL 201 (475)
Q Consensus 136 l~~~~~~~~v~~-~~~~~v~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~----~---~~ 201 (475)
+.|.+ ..++. ..++.|.+|+..+++. ..+..+.+ +..+|.+++| + + ++
T Consensus 22 ~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 22 VSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV----------------HKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC----------------CTTCEEEEEEEEEEETTTEEEEE
T ss_pred EEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec----------------CCCcEEEEEEecccccCCccccE
Confidence 33544 44544 4578999999887761 11111111 2346899998 6 7 89
Q ss_pred EEEEecCceEEEEeCCCCCc--eEEEeeecCC-----CCceeEEEEEeC----CCCCeEEEEEeCCCeEEEEECCC----
Q 011924 202 LVAGGFQGELICKHLDRPGV--SFCSRTTYDD-----NAITNAVEIYGS----PSGAVHFTASNNDCGVRDFDMGK---- 266 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~-----~~~v~~l~~~~s----~~g~~~l~s~s~dg~v~iwd~~~---- 266 (475)
|++|+.+|.|++|++..... .........| ...|.+++| + |+++.+|++++.|+.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEE--eeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 99999999999999987664 1112344455 588999999 8 88875488889999999999987
Q ss_pred --Ceeee-----eee--------ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 267 --YQLSK-----HFR--------FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 267 --~~~~~-----~~~--------~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
++.+. .+. +...+. +++|+|++ +|++++.++.|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----------------------------~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFAT-----------------------------SVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCC-----------------------------EEEECTTS-EEEEECTTSEEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCce-----------------------------EEEECCCc-eEEEEeCCCcEEE
Confidence 55544 442 355566 99999999 9999999999999
Q ss_pred EECCCCceEEEeec---C---CCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCCceEEEEec-------------C
Q 011924 332 VDSMTGKTIASLCG---H---LDFSFASAWHPNGVTFATGNQD---KTCRIWDLRNLSESVAVLKG-------------N 389 (475)
Q Consensus 332 wd~~~~~~~~~l~~---h---~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~~~~~~~~~~~~-------------~ 389 (475)
||+++++++..+.. | ...|.+++|+|++++|++++.| +.|++||+++ .+++..+.+ |
T Consensus 212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSB
T ss_pred EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCccccccccccccc
Confidence 99999999999998 9 9999999999999999999999 9999999987 788888988 8
Q ss_pred CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe------cc---------------CCCeEEEEEcCCC----
Q 011924 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI------DF---------------FGEISGISFSPDT---- 444 (475)
Q Consensus 390 ~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~i~~l~fspdg---- 444 (475)
...|.+++|+|++++|++++.|+.|+|||+.++..+..+. .| ...|.+++|+|+|
T Consensus 291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~ 370 (397)
T 1sq9_A 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370 (397)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence 9999999999999999999999999999999999999988 77 8999999999999
Q ss_pred ------CeEEEEEecCCcc
Q 011924 445 ------ESLFIGVWDRTYG 457 (475)
Q Consensus 445 ------~~l~~~~~D~~~~ 457 (475)
++|++++.|+.+.
T Consensus 371 ~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 371 MGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TTCTTSCEEEEEETTTEEE
T ss_pred ccccccceEEEecCCCcEE
Confidence 7999999998774
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=267.33 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=215.4
Q ss_pred cccceeEEecCCCeEEEec--------CCeEEEEecCCCCceE---EEeccCCCCCCCCCCCCccccccceeEEEEEEcC
Q 011924 131 FQLRNLVWATSKHDVYLMS--------HFSVIHWSSLTSSRSQ---VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKD 199 (475)
Q Consensus 131 ~~lr~l~~~~~~~~v~~~~--------~~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 199 (475)
|++..+-|.++...|.... +++|.+|+........ +.... .+ .-..+...|.++++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~-~~----------~l~~~~~~v~s~~~~~ 83 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILS-EF----------ALEDNDDSPTAIDASK 83 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEE-EE----------ECCTTSCCCCEEEEET
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeee-EE----------EccCCCCceEEEEeCC
Confidence 4455666777766665532 2468899865543311 10000 00 0001223577889988
Q ss_pred cEEEEEe-----------cCceEEEEeCCCCCceEEEe----e--ecCCCCceeEEEEEeCCCCCeEE-EEEeCCCeEEE
Q 011924 200 KLLVAGG-----------FQGELICKHLDRPGVSFCSR----T--TYDDNAITNAVEIYGSPSGAVHF-TASNNDCGVRD 261 (475)
Q Consensus 200 ~~lvsg~-----------~dg~i~vw~~~~~~~~~~~~----~--~~~~~~~v~~l~~~~s~~g~~~l-~s~s~dg~v~i 261 (475)
+.+++|. .++.+++|++.......... . ...+...+.+++| ||+|+.++ ++++.|++|++
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEE
Confidence 8888764 46789999987654332111 1 1223445788888 99999743 34557999999
Q ss_pred EECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 262 FDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 262 wd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
||+.+++.+..+.+...|. +++|+|+|+++++++.+ .+.+|+..+++.+.
T Consensus 162 wd~~~~~~~~~~~~~~~V~-----------------------------~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 162 IDPSDLTEKFEIETRGEVK-----------------------------DLHFSTDGKVVAYITGS-SLEVISTVTGSCIA 211 (365)
T ss_dssp EETTTTEEEEEEECSSCCC-----------------------------EEEECTTSSEEEEECSS-CEEEEETTTCCEEE
T ss_pred eECCCCcEEEEeCCCCceE-----------------------------EEEEccCCceEEeccce-eEEEEEeccCccee
Confidence 9999999999998888899 99999999999999855 57777777777654
Q ss_pred E--eecCCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCCc---eEEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 342 S--LCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 342 ~--l~~h~~~v~~~~~sp~g~~l~t~s~dg----~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
. ..+|...+.+++|+|+++++++++.|+ ++++|++..... ....+.+|..+|++++|+|+|++||+|+.|+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 3 456888999999999999999999887 689999865322 2456778889999999999999999999999
Q ss_pred eEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 413 FVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
.|+|||+++++++..+ .+|.+.|++++|||||++|++|+.|++++.
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999988876 579999999999999999999999998853
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=268.09 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=197.8
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd 263 (475)
+...|.+++| ++++|++|+.||+|++|++..... .+...+.+|.+.|.+++| +++ ++. |++|+.|++|++||
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~--~~~~~~~~-l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAW--AHPMYGNI-LASCSYDRKVIIWR 87 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEE--CCGGGSSC-EEEEETTSCEEEEC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEe--CCCCCCCE-EEEEECCCEEEEEE
Confidence 3457999999 899999999999999999976542 224566789999999999 763 665 99999999999999
Q ss_pred CCCCe--eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCCc
Q 011924 264 MGKYQ--LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 264 ~~~~~--~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
+++++ ....+. |...|. +++|+|+ +.+|++++.|+.|++||++.+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~-----------------------------~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~ 138 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVN-----------------------------SVCWAPHDYGLILACGSSDGAISLLTYTGEG 138 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCC-----------------------------EEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred CCCCcceEEEEccCCCCceE-----------------------------EEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence 98764 344444 777888 9999997 8899999999999999998764
Q ss_pred e---EEEeecCCCCeEEEEEecC-----------------CCEEEEEeCCCeEEEEECCCCC--ceEEEEecCCCceEEE
Q 011924 339 T---IASLCGHLDFSFASAWHPN-----------------GVTFATGNQDKTCRIWDLRNLS--ESVAVLKGNLGAIRSI 396 (475)
Q Consensus 339 ~---~~~l~~h~~~v~~~~~sp~-----------------g~~l~t~s~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l 396 (475)
. ...+.+|...+.+++|+|+ +++|++|+.|++|++||++... .++..+.+|...|+++
T Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence 2 3455689999999999997 4789999999999999997532 4677788999999999
Q ss_pred EEccCC----CEEEEEcCCCeEEEEECCCC---e-eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 397 RYTSDG----RYMATAEPADFVHVYDVKSG---Y-EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 397 ~~spdg----~~la~~~~dg~i~iwd~~~~---~-~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|+|++ ++||+++.|++|+||++.+. . ....+..|.+.|.+++|+|+|++|++++.|+++.
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence 999987 89999999999999998762 1 2234556889999999999999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=270.37 Aligned_cols=294 Identities=10% Similarity=0.060 Sum_probs=232.5
Q ss_pred eeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEE-EE--cCcEEEEEecCce
Q 011924 135 NLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL-AV--KDKLLVAGGFQGE 210 (475)
Q Consensus 135 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~--~~~~lvsg~~dg~ 210 (475)
.+.|.++...+++. .++.+.+|+..+++.... .....+.++ .+ ++++|++|+.+|.
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--------------------LKRADYTAVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTT--------------------SCSCCEEEEEEECSSSCEEEEEETTSC
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeE--------------------EecCCceEEEEEecCCCEEEEEECCCC
Confidence 45566666666664 578999999765433211 011123333 33 8999999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc---EEeccCCc
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP---VNVSSSYC 286 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~---v~~s~~~~ 286 (475)
|++|++..... ...+..|...|.+++| +|+++. |++++.|++|++||+.+++.+..+. |... +.|+|++.
T Consensus 121 i~iwd~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 121 IKVLDSNFNLQ---REIDQAHVSEITKLKF--FPSGEA-LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp EEEECTTSCEE---EEETTSSSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred EEEEeCCCcce---eeecccccCccEEEEE--CCCCCE-EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 99999875433 3566789999999999 999985 9999999999999999988887776 5444 55899998
Q ss_pred eEE------EEEEeecccceEEEEee----------------------------eeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 287 IIL------LCRLLNFMTEKVIICLL----------------------------CLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 287 ~l~------~~~v~d~~~~~~~~~~~----------------------------~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
.++ .+++||..+++...... .+.+++|+|++++|++++.+|.|++|
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 885 58999999988776653 23456678999999999999999999
Q ss_pred ECCCCceEEEee-cCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEEEc
Q 011924 333 DSMTGKTIASLC-GHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 333 d~~~~~~~~~l~-~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~ 409 (475)
|+++++.+..+. +|...|.+++|+|++. +|++|+.||+|++||+++...++..+.. +...|+++. .|++++|++++
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~ 353 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSG 353 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEET
T ss_pred ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEec
Confidence 999998877765 4889999999999998 9999999999999999886566777777 566777775 56788999999
Q ss_pred CCCeEEEEECCCCe---------eEEEEeccCCCeEEEEEcCCCC---eEEEEEecCC
Q 011924 410 PADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTE---SLFIGVWDRT 455 (475)
Q Consensus 410 ~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~fspdg~---~l~~~~~D~~ 455 (475)
.|+.|++|++.... ....+..|.+.|.+++|+|+++ .|++++.++.
T Consensus 354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~ 411 (420)
T 3vl1_A 354 FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNF 411 (420)
T ss_dssp TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTE
T ss_pred CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCce
Confidence 99999999987632 2234556788999999999999 6777776654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.38 Aligned_cols=263 Identities=13% Similarity=0.122 Sum_probs=217.0
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c----CcEEEEEecCceEEEEeCCC
Q 011924 145 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K----DKLLVAGGFQGELICKHLDR 218 (475)
Q Consensus 145 v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~----~~~lvsg~~dg~i~vw~~~~ 218 (475)
+....++.|.+|+..+++....+.... ...+...|.+++| + +.+|++|+.+|.|++|++..
T Consensus 38 ~~~~~~~~v~vw~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 104 (366)
T 3k26_A 38 FATVGSNRVTLYECHSQGEIRLLQSYV-------------DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 104 (366)
T ss_dssp EEEEETTEEEEEEECGGGCEEEEEEEE-------------CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT
T ss_pred EEECCCCEEEEEEcCCCcEEEeeeecc-------------ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh
Confidence 333567899999988766544433210 0113346889988 4 57999999999999999987
Q ss_pred CCceEEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeee----eccccEEeccCCceEEEEEE
Q 011924 219 PGVSFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHF----RFPWPVNVSSSYCIILLCRL 293 (475)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~v~~s~~~~~l~~~~v 293 (475)
.... ..+..|...|.+++| +| ++.. |++++.|+.|++||+.+++.+..+ .+...+.
T Consensus 105 ~~~~---~~~~~~~~~i~~~~~--~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~------------- 165 (366)
T 3k26_A 105 MQCI---KHYVGHGNAINELKF--HPRDPNL-LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL------------- 165 (366)
T ss_dssp CCEE---EEEESCCSCEEEEEE--CSSCTTE-EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEE-------------
T ss_pred ceEe---eeecCCCCcEEEEEE--CCCCCCE-EEEEeCCCeEEEEEeecCeEEEEecccccccCcee-------------
Confidence 6544 455678999999999 99 7764 999999999999999999988887 3778888
Q ss_pred eecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee----------------------------c
Q 011924 294 LNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC----------------------------G 345 (475)
Q Consensus 294 ~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~----------------------------~ 345 (475)
+++|+|++++|++++.|+.|++||+++++.+..+. +
T Consensus 166 ----------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 166 ----------------SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp ----------------EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred ----------------EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 99999999999999999999999999876543333 3
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-------------ceEEEEecCCCceEEEEEccC--CCEEEEEcC
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-------------ESVAVLKGNLGAIRSIRYTSD--GRYMATAEP 410 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-------------~~~~~~~~~~~~v~~l~~spd--g~~la~~~~ 410 (475)
|...|.+++|+ +++|++++.|+.|++||+++.. ..+..+..|...|++++|+|+ |++|++++.
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 99999999998 7899999999999999997632 247788889999999999999 999999999
Q ss_pred CCeEEEEECCCCee----EEEEecc--CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 411 ADFVHVYDVKSGYE----KEQEIDF--FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 411 dg~i~iwd~~~~~~----~~~~~~~--~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
||.|++||+.++.. ...+..| .+.|.+++|+|++++|++++.|+.+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 360 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 360 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEE
Confidence 99999999998753 3356666 68999999999999999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=273.59 Aligned_cols=233 Identities=21% Similarity=0.292 Sum_probs=201.8
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|++++| ++++|++|+.||+|++|++.+.... ..+..|...|.+++| +|+|+. +++|+.|+.|++|++.+.
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---~~~~~h~~~v~~~~~--s~~g~~-las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT---HAIKLHCPWVMECAF--APNGQS-VACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE---EEEECCCTTCCCCEE--CTTSSE-EEECCSSSCCEEEECCCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---eEEecCCCCEEEEEE--CCCCCE-EEEeeCCCcEEEEECCCC
Confidence 47999999 8899999999999999998765543 556678889999999 999986 999999999999999653
Q ss_pred e-------eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-CcEEEEEeCCCcEEEEECCCCc
Q 011924 268 Q-------LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-GKLLIIVGDNPDGLLVDSMTGK 338 (475)
Q Consensus 268 ~-------~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~ 338 (475)
. ....+. |...+. +++|+|+ +..|++++.|+.|++||+++++
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~-----------------------------~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYAS-----------------------------SCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCC-----------------------------CCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred ccccCCccceeeccCCCcceE-----------------------------EEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 2 122232 566666 8889996 5679999999999999999999
Q ss_pred eEEEe-----ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 339 TIASL-----CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 339 ~~~~l-----~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
.+..+ .+|...|.+++|+| ++++|++|+.|++|++||++....++..+.+|.+.|.+++|+|+|++|++|+.|+
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 98887 67999999999987 8999999999999999999866788999999999999999999999999999999
Q ss_pred eEEEEECCCCeeEEEEeccC-------CCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 413 FVHVYDVKSGYEKEQEIDFF-------GEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~-------~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|+|||++++..+..+..+. ..|.+++|+|+|++|++|+.|+.+.
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 99999999998887765533 2489999999999999998888764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=262.18 Aligned_cols=274 Identities=14% Similarity=0.140 Sum_probs=219.6
Q ss_pred cceeEEecCCCeEEEec-----CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c---CcEE
Q 011924 133 LRNLVWATSKHDVYLMS-----HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K---DKLL 202 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~-----~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~---~~~l 202 (475)
+..+.|.+....++... ++.|.+|+..+++........ +..+|.+++| + +++|
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~l 83 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE-----------------KAKPIKCGTFGATSLQQRYL 83 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEE-----------------ESSCEEEEECTTCCTTTCCE
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeec-----------------ccCcEEEEEEcCCCCCCceE
Confidence 34555777676666554 789999998877654433221 2347999999 4 6999
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEE----eCCCCCeEEEEEeCCCeEEEEECCCCe-eeeeee-cc
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIY----GSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FP 276 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~----~s~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~ 276 (475)
++|+.+|.|++|++...... ...+..|...|.++.|. ++|+++. |++++.|+.|++||+.+++ .+..+. +.
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMP--VYSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp EEEETTSCEEEECTTSCSSC--SEEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred EEecCCCeEEEEeCCCCCcc--EEEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 99999999999999876622 24566899999999763 3788886 8999999999999998876 555554 22
Q ss_pred ----ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE----ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 277 ----WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS----QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 277 ----~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~----~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
..+. +++ |+|++++|++++.++.|++||+++++.... ..|..
T Consensus 161 ~~~~~~v~-----------------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~ 210 (357)
T 3i2n_A 161 GENKRDCW-----------------------------TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKN 210 (357)
T ss_dssp TSCCCCEE-----------------------------EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSS
T ss_pred CCCCCceE-----------------------------EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCC
Confidence 2555 666 789999999999999999999999887544 56889
Q ss_pred CeEEEEEec---CCCEEEEEeCCCeEEEEECCCCCceEE-----EEecCCCceEEEEEccCCC-EEEEEcCCCeEEEEEC
Q 011924 349 FSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVA-----VLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDV 419 (475)
Q Consensus 349 ~v~~~~~sp---~g~~l~t~s~dg~v~iwd~~~~~~~~~-----~~~~~~~~v~~l~~spdg~-~la~~~~dg~i~iwd~ 419 (475)
.|.+++|+| ++.+|++++.|+.|++||++. ..++. .+.+|...|++++|+|+++ +|++++.||.|++||+
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 999999999 999999999999999999976 44333 3348999999999999998 8999999999999998
Q ss_pred CCC-------------------eeEEEEeccCCCeEEEEEcCCCCeEE-EEEecCCcc
Q 011924 420 KSG-------------------YEKEQEIDFFGEISGISFSPDTESLF-IGVWDRTYG 457 (475)
Q Consensus 420 ~~~-------------------~~~~~~~~~~~~i~~l~fspdg~~l~-~~~~D~~~~ 457 (475)
.++ ..+..+..|.+.|.+++|+|+|++|+ +++.|+.+.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 754 35667778999999999999999999 788897663
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-31 Score=261.62 Aligned_cols=266 Identities=16% Similarity=0.232 Sum_probs=223.6
Q ss_pred eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 136 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
+-|++ .+.|....++.|++|+..+++...++.+.+| ...|++|+| +|++|++|+.||.|++
T Consensus 111 l~wS~-~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~----------------~~~V~sv~fspdg~~lasgs~Dg~v~i 173 (420)
T 4gga_A 111 VDWSS-GNVLAVALDNSVYLWSASSGDILQLLQMEQP----------------GEYISSVAWIKEGNYLAVGTSSAEVQL 173 (420)
T ss_dssp EEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCST----------------TCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECC-CCEEEEEeCCEEEEEECCCCCEEEEEEecCC----------------CCcEEEEEECCCCCEEEEEECCCeEEE
Confidence 34764 5677777899999999999988777665432 246999999 8999999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-eeeeeee-ccccEEeccCCceEEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLSKHFR-FPWPVNVSSSYCIILLC 291 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~s~~~~~l~~~ 291 (475)
|++...... ....+|...+.++.+ ++. ++++|+.|+.+++|+.... ..+..+. +...+.
T Consensus 174 Wd~~~~~~~---~~~~~h~~~v~~~s~----~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~----------- 234 (420)
T 4gga_A 174 WDVQQQKRL---RNMTSHSARVGSLSW----NSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC----------- 234 (420)
T ss_dssp EETTTTEEE---EEECCCSSCEEEEEE----ETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-----------
T ss_pred EEcCCCcEE---EEEeCCCCceEEEee----CCC-EEEEEeCCCceeEeeecccceeeEEeccccccee-----------
Confidence 999875543 566788989988877 445 4999999999999998764 3444454 777888
Q ss_pred EEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc----eEEEeecCCCCeEEEEEecC-CCEEEEE-
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK----TIASLCGHLDFSFASAWHPN-GVTFATG- 365 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~----~~~~l~~h~~~v~~~~~sp~-g~~l~t~- 365 (475)
.+.++|+++++++++.|+.+++|+..+++ .+.....|...|.+++|+|. +.+++++
T Consensus 235 ------------------~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 235 ------------------GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp ------------------EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred ------------------eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 99999999999999999999999998765 35677789999999999995 4566654
Q ss_pred -eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc--CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 366 -NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE--PADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 366 -s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+.|++|++||+++ +.++..+..+ ..+.++.|+|+++.|++++ .|+.|+|||+.++.++..+.+|.+.|.+++|+|
T Consensus 297 gs~D~~I~iwd~~t-~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 297 GTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp CTTTCEEEEEETTT-TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ecCCCEEEEEeCCc-cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 5799999999987 7777777765 4788999999999888765 689999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+|++|++|+.|++++
T Consensus 375 dg~~l~S~s~D~tvr 389 (420)
T 4gga_A 375 DGATVASAAADETLR 389 (420)
T ss_dssp TSSCEEEEETTTEEE
T ss_pred CCCEEEEEecCCeEE
Confidence 999999999999875
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=267.30 Aligned_cols=243 Identities=15% Similarity=0.105 Sum_probs=193.3
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
...+.|.++...+....++.|++|+..+++...+..+ ....+...|.+++| ++++|++|+.+|.
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~--------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKF--------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCE--------------EECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEee--------------ccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 4556688877666667789999999877654322111 11123457999999 8899999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCce
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCI 287 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~ 287 (475)
|++|++.+.... ..+..|...|++++| +|++..++++++.|++|++||+++++....+. +...+.
T Consensus 163 v~iwd~~~~~~~---~~~~~h~~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~------- 230 (357)
T 4g56_B 163 VKVWDLSQKAVL---KSYNAHSSEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT------- 230 (357)
T ss_dssp EEEEETTTTEEE---EEECCCSSCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE-------
T ss_pred EEEEECCCCcEE---EEEcCCCCCEEEEEE--ccCCCceeeeeccCCceEEEECCCCceeeeeeecccccccc-------
Confidence 999999875443 566789999999999 99987669999999999999999887766554 455677
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCC-CcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCC-CEEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-VTFATG 365 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~t~ 365 (475)
+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ ++||+|
T Consensus 231 ----------------------~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 231 ----------------------SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp ----------------------EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred ----------------------chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 9999996 5788999999999999999999999999999999999999987 689999
Q ss_pred eCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 366 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
+.|++|+|||++. ++++.. .+|.+.|++++|+| ++++|++++.|+.|++|++.+....
T Consensus 289 s~D~~i~iwd~~~-~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 289 SEDCTVAVLDADF-SEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp ETTSCEEEECTTS-CEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred eCCCEEEEEECCC-CcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9999999999976 565554 47999999999999 8999999999999999999764433
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=264.38 Aligned_cols=233 Identities=17% Similarity=0.222 Sum_probs=196.6
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeee---------------cCCCCceeEEEEEeCCCCCeEEEE
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT---------------YDDNAITNAVEIYGSPSGAVHFTA 252 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~---------------~~~~~~v~~l~~~~s~~g~~~l~s 252 (475)
..|.+++| +|++|++|+ ++.+++|++............ ..+...|.+++| +|+|+. |++
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~-l~s 140 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKF-LAT 140 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE--CTTSSE-EEE
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCE-EEE
Confidence 46888988 899999876 789999999876543211100 012234889999 999986 999
Q ss_pred EeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 253 SNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 253 ~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
|+.|++|++||+.+++.+..+. |...|. +++|+|++++|++++.|+.|++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-----------------------------~~~~~p~~~~l~s~s~d~~v~i 191 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIY-----------------------------SLDYFPSGDKLVSGSGDRTVRI 191 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEE-----------------------------EEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEE-----------------------------EEEEcCCCCEEEEecCCCcEEE
Confidence 9999999999999999888877 788899 9999999999999999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE-------ecCCCceEEEEEccCCC
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL-------KGNLGAIRSIRYTSDGR 403 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-------~~~~~~v~~l~~spdg~ 403 (475)
||+++++....+. +...+.+++|+| ++++|++|+.|++|++||+++ +..+..+ .+|...|.+++|+|+|+
T Consensus 192 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 192 WDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred EECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 9999999888776 567899999999 999999999999999999987 6666665 56888999999999999
Q ss_pred EEEEEcCCCeEEEEECCCC------------eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 404 YMATAEPADFVHVYDVKSG------------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|++|+.|+.|++||+.+. .+...+.+|...|.+++|+|++++|++|+.|+++.
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 9999999999999999753 34556778999999999999999999999887653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-31 Score=259.53 Aligned_cols=260 Identities=15% Similarity=0.146 Sum_probs=218.9
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCC
Q 011924 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 219 (475)
Q Consensus 142 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~ 219 (475)
...+....++.|.+|+..+++....+... +...|.+++| ++++|++|+.+|.|++|++...
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 44555567899999999888766554331 3347999999 8899999999999999999876
Q ss_pred CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee-ccccEEeccCCceEEEEEEeecc
Q 011924 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
... ..+..|...|.+++| + +. ++++++.|+.|++||+.. ...+..+. +...+.
T Consensus 167 ~~~---~~~~~~~~~v~~~~~--~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~----------------- 221 (401)
T 4aez_A 167 TKL---RTMAGHQARVGCLSW--N--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC----------------- 221 (401)
T ss_dssp CEE---EEECCCSSCEEEEEE--E--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-----------------
T ss_pred eEE---EEecCCCCceEEEEE--C--CC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-----------------
Confidence 544 555689999999998 4 44 499999999999999984 55555555 788888
Q ss_pred cceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCC-CEEEEEe--CCCeEEEE
Q 011924 298 TEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-VTFATGN--QDKTCRIW 374 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~t~s--~dg~v~iw 374 (475)
+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++ .++++++ .|++|++|
T Consensus 222 ------------~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 222 ------------GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp ------------EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred ------------EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999965 5666665 79999999
Q ss_pred ECCCCCceEEEEecCCCceEEEEEccCCCEEEE--EcCCCeEEEEECCCCeeEE--EEeccCCCeEEEEEcCCCCeEEEE
Q 011924 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT--AEPADFVHVYDVKSGYEKE--QEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 375 d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~--~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
|+++ ++++..+. +...|.+++|+|+|++|++ |+.++.|+|||+.++.... .+..|.+.|.+++|+|+|++|+++
T Consensus 290 d~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 290 NAAT-GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp ETTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred ECCC-CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 9987 67777776 4568999999999999999 4489999999999865444 356899999999999999999999
Q ss_pred EecCCcc
Q 011924 451 VWDRTYG 457 (475)
Q Consensus 451 ~~D~~~~ 457 (475)
+.|+.+.
T Consensus 368 ~~dg~i~ 374 (401)
T 4aez_A 368 ASDENLK 374 (401)
T ss_dssp CTTSEEE
T ss_pred eCCCcEE
Confidence 9998763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=272.96 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=219.3
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCce-EEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-FCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~ 225 (475)
.++.|.+|+..++.....+ ....+...|.+++| ++++|++|+.+|.|++|++...... ...
T Consensus 43 ~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 106 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPI----------------ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM 106 (416)
T ss_dssp CCCCCEEEESSSGGGCSCS----------------CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEE
T ss_pred CCCeEEEEEccCCCCCcEE----------------EEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccch
Confidence 3578999998765432110 00113357999999 8899999999999999999863211 134
Q ss_pred eeecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECCCCe------eeeee----eccccEEeccCCceEEEEEEe
Q 011924 226 RTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGKYQ------LSKHF----RFPWPVNVSSSYCIILLCRLL 294 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~~~~------~~~~~----~~~~~v~~s~~~~~l~~~~v~ 294 (475)
..+..|...|.+++| +|+ +. +|++++.|+.|++||+.+++ ....+ .+...+.
T Consensus 107 ~~~~~h~~~v~~~~~--~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------- 169 (416)
T 2pm9_A 107 ARFSNHSSSVKTVKF--NAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI-------------- 169 (416)
T ss_dssp EECCCSSSCCCEEEE--CSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC--------------
T ss_pred hhccCCccceEEEEE--cCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee--------------
Confidence 666789999999999 998 55 59999999999999998876 32222 2566777
Q ss_pred ecccceEEEEeeeeeeEEECCC-CcEEEEEeCCCcEEEEECCCCceEEEeecC------CCCeEEEEEecCC-CEEEEEe
Q 011924 295 NFMTEKVIICLLCLQHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGH------LDFSFASAWHPNG-VTFATGN 366 (475)
Q Consensus 295 d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h------~~~v~~~~~sp~g-~~l~t~s 366 (475)
+++|+|+ +.+|++++.++.|++||+++++.+..+..| ...+.+++|+|++ .++++++
T Consensus 170 ---------------~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 170 ---------------SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp ---------------EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ---------------EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 9999998 789999999999999999999999988876 7899999999987 6999999
Q ss_pred CCC---eEEEEECCCCCceEEEEe-cCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEc
Q 011924 367 QDK---TCRIWDLRNLSESVAVLK-GNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 367 ~dg---~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
.|+ +|++||++....++..+. +|...|++++|+| ++++|++++.|+.|++||+.+++.+..+..|.+.|.+++|+
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s 314 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA 314 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence 998 999999987557788888 8999999999999 99999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEecCCcc
Q 011924 442 PDT-ESLFIGVWDRTYG 457 (475)
Q Consensus 442 pdg-~~l~~~~~D~~~~ 457 (475)
|++ .+|++++.|+.+.
T Consensus 315 ~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 315 PEAPDLFACASFDNKIE 331 (416)
T ss_dssp TTCTTEEEECCSSSEEE
T ss_pred CCCCCEEEEEecCCcEE
Confidence 999 8999999998763
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=257.89 Aligned_cols=274 Identities=14% Similarity=0.117 Sum_probs=224.1
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
+..+.|.++...+++. .++.|.+|+..+++...+..+.+ +...|.+++| ++++|++|+.+|
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE----------------HNGQVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC----------------CSSCEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC----------------CCCcccEEEEeCCCCEEEEEcCCC
Confidence 4556677777777776 67999999987775323333222 2346899999 789999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee---eeeee--ccccEEeccC
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---SKHFR--FPWPVNVSSS 284 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~s~~ 284 (475)
.|++|++....... ......|...|.+++| +|+++. +++++.|+.|++|++..++. ...+. +...+.
T Consensus 75 ~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~---- 146 (372)
T 1k8k_C 75 NAYVWTLKGRTWKP-TLVILRINRAARCVRW--APNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL---- 146 (372)
T ss_dssp CEEEEEEETTEEEE-EEECCCCSSCEEEEEE--CTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE----
T ss_pred eEEEEECCCCeeee-eEEeecCCCceeEEEE--CCCCCE-EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee----
Confidence 99999997654332 2344678889999999 999986 89999999999999987652 23332 567788
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC------------------CCCceEEEeecC
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS------------------MTGKTIASLCGH 346 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~------------------~~~~~~~~l~~h 346 (475)
+++|+|++++|++++.++.|++||+ ..++.+..+.+|
T Consensus 147 -------------------------~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 147 -------------------------SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp -------------------------EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred -------------------------EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 9999999999999999999999995 467888999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC--Cee
Q 011924 347 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS--GYE 424 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~--~~~ 424 (475)
...+.+++|+|++++|++++.|++|++||+++ ++++..+..|..+|.+++|+|+|++|+++ .|+.|++|++.+ +..
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceE
Confidence 99999999999999999999999999999987 78899999999999999999999999888 899999999987 421
Q ss_pred --------------------------------E------EEE-eccCCCeEEEEEc-CCC---CeEEEEEecCCcc
Q 011924 425 --------------------------------K------EQE-IDFFGEISGISFS-PDT---ESLFIGVWDRTYG 457 (475)
Q Consensus 425 --------------------------------~------~~~-~~~~~~i~~l~fs-pdg---~~l~~~~~D~~~~ 457 (475)
. ..+ .+|.+.|.+++|+ ++| .+|++|+.|+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence 0 222 3788999999966 677 9999999998763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=272.98 Aligned_cols=278 Identities=13% Similarity=0.169 Sum_probs=227.2
Q ss_pred ccceeEEecCCCeEEEe-cCCeEEEEecCCCC--ceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c-CcEEEEE
Q 011924 132 QLRNLVWATSKHDVYLM-SHFSVIHWSSLTSS--RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K-DKLLVAG 205 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~-~~~lvsg 205 (475)
....+.|.++...|++. .++.|.+|+..+.. ...+..+.+ +...|.+++| + +++|++|
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN----------------HSSSVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC----------------SSSCCCEEEECSSSTTBEEEE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC----------------CccceEEEEEcCCCCCEEEEE
Confidence 34556688877777775 56899999987621 112222221 2346889999 4 8899999
Q ss_pred ecCceEEEEeCCCCC------ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec----
Q 011924 206 GFQGELICKHLDRPG------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF---- 275 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---- 275 (475)
+.+|.|++|++.... ..........|...|.+++| +|++..++++++.|+.|++||+.+++.+..+..
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 210 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence 999999999998765 33222334678889999999 999555699999999999999999988887773
Q ss_pred ---cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCC---cEEEEECCCC-ceEEEee-cC
Q 011924 276 ---PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNP---DGLLVDSMTG-KTIASLC-GH 346 (475)
Q Consensus 276 ---~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg---~i~iwd~~~~-~~~~~l~-~h 346 (475)
...+. +++|+|++ .++++++.++ .|++||++++ +++..+. +|
T Consensus 211 ~~~~~~v~-----------------------------~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~ 261 (416)
T 2pm9_A 211 SGIKQQLS-----------------------------VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH 261 (416)
T ss_dssp SCCCCCEE-----------------------------EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred cccCCceE-----------------------------EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence 56777 99999987 6899999998 9999999986 6777888 89
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEcCCCeEEEEECCCCee
Q 011924 347 LDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 347 ~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~~dg~i~iwd~~~~~~ 424 (475)
...|.+++|+| ++++|++++.|++|++||+++ ++++..+.+|...|.+++|+|++ ++|++++.|+.|+|||+.++..
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999999999 999999999999999999987 78899999999999999999999 8999999999999999987653
Q ss_pred EEEEec-----------------------------------cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 425 KEQEID-----------------------------------FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 425 ~~~~~~-----------------------------------~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
...... |...+.+++|+|+|++|++++.|+++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp SSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred CcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 322111 456778999999999999999998875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=259.18 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=212.8
Q ss_pred cceeEEecCC-CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEec
Q 011924 133 LRNLVWATSK-HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~-~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~ 207 (475)
...+.|.+.. ..++.. .++.|.+|+..+++....+...+ +...|.+++| ++++|++|+.
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMG----------------PGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCS----------------TTCBEEEEEEETTEEEEEEEEET
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCC----------------cCCceeEEEeCCCCCCEEEEEeC
Confidence 3445577766 555554 56899999998777666544322 2347999999 4589999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCc
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYC 286 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~ 286 (475)
||.|++|++.. ...........+...|.+++| +|+++. |++++.|+.|++||+ +++.+..+. +...+.
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~------ 208 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDV--SVSRQM-LATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT------ 208 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEE--ETTTTE-EEEEETTSEEEEEET-TSCEEEEEECSSSCEE------
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEE--CCCCCE-EEEECCCCCEEEEEC-CCCEEEEeccCCCcEE------
Confidence 99999999985 323222223345578999999 999986 999999999999999 455666665 788898
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCC----CceEEEeecCCCCeEEEEEec-CCC
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMT----GKTIASLCGHLDFSFASAWHP-NGV 360 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~----~~~~~~l~~h~~~v~~~~~sp-~g~ 360 (475)
+++|+|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++|+| +++
T Consensus 209 -----------------------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 209 -----------------------HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp -----------------------EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred -----------------------EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC
Confidence 999999999 999999999999999997 6666666 6999999999999 999
Q ss_pred EEEEEeCCCeEEEEECCCCCceEEEEecCC-----------------CceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNL-----------------GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 361 ~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-----------------~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
+|++++.|++|++||+++ ......+.+|. +.+..++|+|+|++ +++.|+.|+|||+.++.
T Consensus 265 ~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred EEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 999999999999999987 44444554332 23445667777766 77789999999999999
Q ss_pred eEEEEec--cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 424 EKEQEID--FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 424 ~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.+..+.. |.+.+..++|+|+|++|++|+ |+.+
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i 375 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNI 375 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEec-CCcE
Confidence 9888876 457788889999999999996 8654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.61 Aligned_cols=233 Identities=13% Similarity=0.089 Sum_probs=192.3
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..+|.+++| ++++|++|+.+|.|++|++..... .+...+..|...|.+++| +|+++. |++++.|++|++||+.+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~--s~~~~~-l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-KHARTFSDHDKIVTCVDW--APKSNR-IVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-EECCCBCCCSSCEEEEEE--CTTTCC-EEEEETTSSEEEC----
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-EEEEEEecCCceEEEEEE--eCCCCE-EEEEeCCCeEEEEEcCC
Confidence 447888888 799999999999999999986531 223566789999999999 999986 99999999999999988
Q ss_pred Ce---eeeee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCc---e
Q 011924 267 YQ---LSKHF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---T 339 (475)
Q Consensus 267 ~~---~~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~ 339 (475)
++ ....+ .+...+. +++|+|++++|++++.|+.|++||+++++ .
T Consensus 87 ~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAAT-----------------------------FVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp --CCCCEEECCCCSSCEE-----------------------------EEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred CCceeeeeEecccCCceE-----------------------------EEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 76 33333 3778888 99999999999999999999999999887 4
Q ss_pred EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----------------CCceEEEEecCCCceEEEEEccC
Q 011924 340 IASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN-----------------LSESVAVLKGNLGAIRSIRYTSD 401 (475)
Q Consensus 340 ~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~-----------------~~~~~~~~~~~~~~v~~l~~spd 401 (475)
...+.+ |...|.+++|+|++++|++++.|++|++||++. .++++..+ +|.+.|.+++|+|+
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 777887 999999999999999999999999999999852 13455555 88899999999999
Q ss_pred CCEEEEEcCCCeEEEEECCCCee----EEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 402 GRYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 402 g~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
|++|++++.|+.|+|||+.++.. +..+..|.+.|.+++|+|+|++|++|+.|+.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence 99999999999999999999877 6778889999999999999999988865543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=251.34 Aligned_cols=232 Identities=16% Similarity=0.202 Sum_probs=200.5
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEee--ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT--TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
..+|.+++| ++++|++++ +|.|++|++...+....... ...|...|.+++| +|+++. +++++.|+.|++|++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL--LPDGCT-LIVGGEASTLSIWDL 126 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE--CTTSSE-EEEEESSSEEEEEEC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEE--cCCCCE-EEEEcCCCcEEEEEC
Confidence 347888998 788999998 99999999987653221122 2368889999999 999986 888999999999999
Q ss_pred CCCe--eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 265 GKYQ--LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~~--~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
.+++ ....+. +...+. +++|+|++++|++++.++.|++||+++++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~i~-----------------------------~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACY-----------------------------ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp CCC--EEEEEEECSSSCEE-----------------------------EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCCcceeeecccCCCceE-----------------------------EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 8876 344444 666788 99999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+.+|...+.+++|+|++++|++++.|+.|++||+++ ++.+..+. +...+.+++|+|+|++|++++.++.|++||+.+
T Consensus 178 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC-CceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 9999999999999999999999999999999999987 66666654 667899999999999999999999999999998
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.. ..+..|.+.|.+++|+|++++|++++.|+.+
T Consensus 256 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 289 (337)
T 1gxr_A 256 PDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289 (337)
T ss_dssp SCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCe-EEEcCCccceeEEEECCCCCEEEEecCCCcE
Confidence 764 4667899999999999999999999998765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=254.32 Aligned_cols=250 Identities=15% Similarity=0.162 Sum_probs=206.9
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCce-EEEeeecCCCCceeEEEEEeCC--CCCeEEEEEeCCCeEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSP--SGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~l~~~~s~--~g~~~l~s~s~dg~v~iw 262 (475)
+...|++++| ++++|++|+.||.|++|++...... .....+..|...|.+++| +| ++.. |++++.|++|++|
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~d~~~-l~s~~~dg~v~vw 86 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--ASPEYGRI-IASASYDKTVKLW 86 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEE--CCGGGCSE-EEEEETTSCEEEE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEE--cCCCCCCE-EEEEcCCCeEEEE
Confidence 3457999999 8899999999999999999865432 234556789999999999 88 4765 9999999999999
Q ss_pred ECCCC---------eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEE
Q 011924 263 DMGKY---------QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGL 330 (475)
Q Consensus 263 d~~~~---------~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~ 330 (475)
|+.++ +.+..+. +..++. +++|+|+ +.+|++++.|+.|+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLY-----------------------------SVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEE-----------------------------EEEECCGGGCSEEEEEETTCEEE
T ss_pred ecCCCcccccccCcceeeeecccCCcee-----------------------------EEEEcCCCCCcEEEEecCCCcEE
Confidence 99876 3444554 677888 9999999 99999999999999
Q ss_pred EEECCCCceEEEee-------------cCCCCeEEEEEecC---CCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCc
Q 011924 331 LVDSMTGKTIASLC-------------GHLDFSFASAWHPN---GVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGA 392 (475)
Q Consensus 331 iwd~~~~~~~~~l~-------------~h~~~v~~~~~sp~---g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~ 392 (475)
+||+++++.+..+. +|...+.+++|+|+ +.++++++.++.+.+|+... +. .+..+.+|...
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc
Confidence 99999877544332 57889999999997 99999999999998888765 44 36777889999
Q ss_pred eEEEEEccCC----CEEEEEcCCCeEEEEECCCC----------------------------------------------
Q 011924 393 IRSIRYTSDG----RYMATAEPADFVHVYDVKSG---------------------------------------------- 422 (475)
Q Consensus 393 v~~l~~spdg----~~la~~~~dg~i~iwd~~~~---------------------------------------------- 422 (475)
|++++|+|++ ++|++++.|+.|++||+.++
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV 296 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence 9999999998 89999999999999999864
Q ss_pred eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEeecceeee
Q 011924 423 YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRNYSYL 471 (475)
Q Consensus 423 ~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~~~~~~~l 471 (475)
..+..+..|.+.|.+++|+|++++|++|+.|+.+ .++....+.....+
T Consensus 297 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v-~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV-RLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCE-EEEEECTTSCEEEE
T ss_pred cEEEEEecccccEEEEEEcCCCCEEEEecCCCcE-EEEecCcCcchhhe
Confidence 4566677799999999999999999999999876 34444444444444
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-30 Score=244.84 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=219.6
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
+.+.| ++...++.. .++.|.+|+..++.....+.. +...|.+++| ++++|++|+.+|.
T Consensus 22 ~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 22 RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT------------------GQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE------------------CSSCEEEEEEETTTTEEEEEETTSC
T ss_pred EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec------------------CCccEEEEEECCCCCEEEEecCCCe
Confidence 34445 555556654 578999999876654443321 2346889988 8999999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|++|++..............|...|.++.| +++ ++++++.|+.|++|| .++....+. +..++.
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~--------- 146 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF----QDG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVW--------- 146 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE----ETT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEE---------
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe----cCC-EEEEEeCCCCEEEEc--CCcEEEecccCCCcee---------
Confidence 999999876544334566789999999988 345 499999999999999 556666665 778888
Q ss_pred EEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeEEEEEecCCCEEEEEeC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
+++|+| +++++++++.++.|++|| .++....+.. |...+.+++|+|++. +++++.
T Consensus 147 --------------------~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 147 --------------------DAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp --------------------EEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred --------------------EEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 899988 999999999999999999 5667777877 899999999999998 999999
Q ss_pred CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeE
Q 011924 368 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 447 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l 447 (475)
|+.|++||+++ ++++..+.+|.+.|++++|+|+| .|++++.|+.|++||+.+++.+..+..|.+.|.+++|+|+++ +
T Consensus 204 dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 280 (313)
T 3odt_A 204 DGLIKLVDMHT-GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-I 280 (313)
T ss_dssp TSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-E
T ss_pred CCeEEEEECCc-hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-E
Confidence 99999999987 78899999999999999999999 588999999999999999999999999999999999999998 6
Q ss_pred EEEEecCCcc
Q 011924 448 FIGVWDRTYG 457 (475)
Q Consensus 448 ~~~~~D~~~~ 457 (475)
++++.|+.+.
T Consensus 281 ~~~~~dg~i~ 290 (313)
T 3odt_A 281 IVGSSDNLVR 290 (313)
T ss_dssp EEEETTSCEE
T ss_pred EEEeCCCcEE
Confidence 6788888763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=254.78 Aligned_cols=237 Identities=14% Similarity=0.166 Sum_probs=201.1
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd 263 (475)
+...|++++| ++++|++|+.+|.|++|++..... .....+..|...|.+++| +++ +.. |++++.|+.|++||
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~--~~~~~~~~-l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDW--AHPKFGTI-LASCSYDGKVLIWK 85 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTSCEEEEE
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEe--CCCCCCCE-EEEeccCCEEEEEE
Confidence 3457999999 789999999999999999974332 234566789999999999 876 775 99999999999999
Q ss_pred CCCCe--eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCC-
Q 011924 264 MGKYQ--LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTG- 337 (475)
Q Consensus 264 ~~~~~--~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~- 337 (475)
+.+++ .+..+. +...+. +++|+|+ +.+|++++.++.|++||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVN-----------------------------SVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp EETTEEEEEEEECCCSSCEE-----------------------------EEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred cCCCceeEeeeecCCCcceE-----------------------------EEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 99886 444444 778888 9999999 999999999999999999877
Q ss_pred -ceEEEeecCCCCeEEEEEec-------------CCCEEEEEeCCCeEEEEECCCCCc---eEEEEecCCCceEEEEEcc
Q 011924 338 -KTIASLCGHLDFSFASAWHP-------------NGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 338 -~~~~~l~~h~~~v~~~~~sp-------------~g~~l~t~s~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp 400 (475)
.....+.+|...|.+++|+| ++.+|++++.|++|++||++.... ....+.+|...|.+++|+|
T Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 137 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence 34556778999999999999 699999999999999999976432 4567788999999999999
Q ss_pred C---CCEEEEEcCCCeEEEEECCCCe---eEEEE--eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 401 D---GRYMATAEPADFVHVYDVKSGY---EKEQE--IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 401 d---g~~la~~~~dg~i~iwd~~~~~---~~~~~--~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+ +++|++++.|+.|+|||+.++. ..... ..|.+.|.+++|+|+|++|++++.|+.+.
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 9 8999999999999999998863 12222 23778999999999999999999998873
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=257.42 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=205.8
Q ss_pred ccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 187 FTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 187 ~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
++..+|.+++| ++++|++|+.+|.|++|++...... ....+..|...|.+++| +|+++. |++++.|+.|++||+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~h~~~v~~~~~--~~~~~~-l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDW--APDSNR-IVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEE--ETTTTE-EEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-eeeeecCCCCcccEEEE--eCCCCE-EEEEcCCCeEEEEEC
Confidence 34567999999 8899999999999999999865421 23556688999999999 999986 889999999999999
Q ss_pred CCCeeeeee---eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--
Q 011924 265 GKYQLSKHF---RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-- 339 (475)
Q Consensus 265 ~~~~~~~~~---~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-- 339 (475)
.+++....+ .+...+. +++|+|++++|++++.++.|++||++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAAR-----------------------------CVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp ETTEEEEEEECCCCSSCEE-----------------------------EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CCCeeeeeEEeecCCCcee-----------------------------EEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 888755443 3677888 999999999999999999999999988763
Q ss_pred -EE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-----------------CCCceEEEEecCCCceEEEEEcc
Q 011924 340 -IA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR-----------------NLSESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 340 -~~-~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~-----------------~~~~~~~~~~~~~~~v~~l~~sp 400 (475)
.. ...+|...|.+++|+|++++|++++.|+.|++||++ ..++++..+.+|...|.+++|+|
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 23 335789999999999999999999999999999964 23678888889999999999999
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++++|++++.|+.|++||+.++..+..+..|...|.+++|+|++++|++| .|+.+.
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 268 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPV 268 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCE
T ss_pred CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEE
Confidence 99999999999999999999999999999999999999999999988877 887763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-29 Score=253.50 Aligned_cols=286 Identities=17% Similarity=0.232 Sum_probs=235.5
Q ss_pred EecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeC
Q 011924 138 WATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 138 ~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~ 216 (475)
+..+...++. ..++.|.+|+..+++....+ .+ +...|.++++++++|++|+.||.|++|++
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~--~~----------------h~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL--VG----------------HTGGVWSSQMRDNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEEC--CC----------------CSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEE--cC----------------CCCCEEEEEecCCEEEEEeCCCeEEEEEC
Confidence 3334555555 46789999998877654332 21 23478999999999999999999999999
Q ss_pred CCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEE-eccCCceEE-----
Q 011924 217 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVN-VSSSYCIIL----- 289 (475)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~-~s~~~~~l~----- 289 (475)
.+.... .....|...|.++.+ + ++. +++++.|++|++||+.+++.+..+. +..++. +..++..++
T Consensus 187 ~~~~~~---~~~~~h~~~v~~~~~--~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 258 (445)
T 2ovr_B 187 ETGECI---HTLYGHTSTVRCMHL--H--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD 258 (445)
T ss_dssp TTTEEE---EEECCCSSCEEEEEE--E--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred CcCcEE---EEECCCCCcEEEEEe--c--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCC
Confidence 875433 566789999999988 4 444 9999999999999999998887776 544444 223455553
Q ss_pred -EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 290 -LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 290 -~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
.+++||..+++.+.... .+.+++| ++..+++++.|+.|++||+++++.+..+.+|...+.++.+ +++++++
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 334 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS 334 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE
Confidence 58999999988776654 5778888 7899999999999999999999999999999999988877 4679999
Q ss_pred EeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE-----eccCCCeE
Q 011924 365 GNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-----IDFFGEIS 436 (475)
Q Consensus 365 ~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~ 436 (475)
|+.||+|++||+++ ++++..+.. |...|.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|.
T Consensus 335 ~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 335 GNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 411 (445)
T ss_dssp EETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred EeCCCeEEEEECCC-CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEE
Confidence 99999999999987 778888876 77899999996 579999999999999999999888877 35778999
Q ss_pred EEEEcCCCCeEEEEEecCCc
Q 011924 437 GISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~D~~~ 456 (475)
+++|+|++.+|++|+.|++.
T Consensus 412 ~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp EEEECSSEEEEEEECSSSSS
T ss_pred EEEecCCEEEEEEcccCCCC
Confidence 99999999999999999973
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=254.07 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=195.2
Q ss_pred cceeEEEEEE--c---CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEE
Q 011924 188 TQTQVSTLAV--K---DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (475)
Q Consensus 188 ~~~~v~~l~~--~---~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iw 262 (475)
+...|++++| + +++|++|+.+|.|++|++...+... ......|...|.+++| +|+++. |++++.|+.|++|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~-l~s~~~dg~v~iw 113 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-PKAQQMHTGPVLDVCW--SDDGSK-VFTASCDKTAKMW 113 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-EEEEEECSSCEEEEEE--CTTSSE-EEEEETTSEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-EEEeccccCCEEEEEE--CcCCCE-EEEEcCCCcEEEE
Confidence 3458999999 4 5899999999999999998744332 2456678999999999 999986 8899999999999
Q ss_pred ECCCCeeeeeeeccccEE---e--ccCCceEE------EEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCc
Q 011924 263 DMGKYQLSKHFRFPWPVN---V--SSSYCIIL------LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPD 328 (475)
Q Consensus 263 d~~~~~~~~~~~~~~~v~---~--s~~~~~l~------~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~ 328 (475)
|+.+++.+....+..++. | ++++..++ .+++||..+++.+.... .+.++.+ .+..+++++.++.
T Consensus 114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 191 (368)
T 3mmy_A 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADV--IYPMAVVATAERG 191 (368)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEE--ETTEEEEEEGGGC
T ss_pred EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEe--cCCeeEEEeCCCc
Confidence 999999888777777766 3 44444332 34555555444333222 2222222 2234444555555
Q ss_pred EEEEECCCCceEEEe-e-cCCCCeEEEEEecCCCE----EEEEeCCCeEEEEECCCCC--ceEEEEecCCC---------
Q 011924 329 GLLVDSMTGKTIASL-C-GHLDFSFASAWHPNGVT----FATGNQDKTCRIWDLRNLS--ESVAVLKGNLG--------- 391 (475)
Q Consensus 329 i~iwd~~~~~~~~~l-~-~h~~~v~~~~~sp~g~~----l~t~s~dg~v~iwd~~~~~--~~~~~~~~~~~--------- 391 (475)
+.+|+++........ . .+...+.++++.++... +++++.|+.|++||++... ..+..+.+|..
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence 555555433322111 1 12344566666665544 9999999999999998632 46777777765
Q ss_pred ---ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 392 ---AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 392 ---~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
+|++++|+|+|++|++++.||.|+|||+.++..+..+..|.+.|.+++|+|+|++|++|+.|+....
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999876543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=258.66 Aligned_cols=261 Identities=14% Similarity=0.096 Sum_probs=219.6
Q ss_pred eeEEEEEE--cCc-EEEEEecCceEEEEeC----CCCCc------eEEEe-eec------CCCCceeEEEEEeCCCCCeE
Q 011924 190 TQVSTLAV--KDK-LLVAGGFQGELICKHL----DRPGV------SFCSR-TTY------DDNAITNAVEIYGSPSGAVH 249 (475)
Q Consensus 190 ~~v~~l~~--~~~-~lvsg~~dg~i~vw~~----~~~~~------~~~~~-~~~------~~~~~v~~l~~~~s~~g~~~ 249 (475)
.+|.+++| ++. +|++|+.+|.|++|++ ..... ..... ... .|.+.|.+++| +|+++.
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~- 122 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW--SHDGNS- 122 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE--CTTSSE-
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE--cCCCCE-
Confidence 46888998 778 9999999999999999 66552 21111 111 15778999999 999986
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeee-ccc---cEEeccCCceEE------EEEEeecccceEEEEee----e--------
Q 011924 250 FTASNNDCGVRDFDMGKYQLSKHFR-FPW---PVNVSSSYCIIL------LCRLLNFMTEKVIICLL----C-------- 307 (475)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~-~~~---~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~-------- 307 (475)
|++++.|+.|++|+ .+++.+..+. +.. .+.|++++..++ .+++||..+++...... .
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 89999999999999 4566666655 444 455899988775 58999999888776544 2
Q ss_pred -------eeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC
Q 011924 308 -------LQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 380 (475)
Q Consensus 308 -------i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~ 380 (475)
+.+++|+|++ .+++++.++.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. .
T Consensus 202 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~ 279 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-G 279 (425)
T ss_dssp ----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-B
T ss_pred ccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-C
Confidence 7889999975 478888999999999999999999999999999999999999999999999999999987 7
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++..+..|...|.+++|+|++ +|++++.|+.|++||+.++..+..+..|...|.+++|+|++++|++++.|+.+.
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 7888888899999999999999 999999999999999999999999999999999999999999999999998763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=250.25 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=221.8
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceE-EEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc-EEEEEec
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQ-VLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK-LLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~-~lvsg~~ 207 (475)
...+.|+++...|++. .++.|.+|+..++.... ..... .+...|.+++| +++ +|++|+.
T Consensus 14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----------------RYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----------------ECSSCEEEEEEEESSSEEEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----------------ecCCceEEEEECCCCCcEEEEEcC
Confidence 3445577777766664 57899999987765211 11111 12346889988 788 9999999
Q ss_pred CceEEEEeC-CCCCceEEEeeecC--CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---------Ceeeeeeec
Q 011924 208 QGELICKHL-DRPGVSFCSRTTYD--DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---------YQLSKHFRF 275 (475)
Q Consensus 208 dg~i~vw~~-~~~~~~~~~~~~~~--~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~ 275 (475)
+|.|++|++ ..... ..... |...|.+++| +| +.. +++++.|+.|++||+.+ ++.+..+.+
T Consensus 78 dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~--~~-~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF----QALTNNEANLGICRICK--YG-DDK-LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp TSCEEEECSSSSSSE----EECBSCCCCSCEEEEEE--ET-TTE-EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred CCeEEEEEeccCCce----EeccccCCCCceEEEEe--CC-CCE-EEEEcCCCeEEEEcccccccccccccCCeeeEEee
Confidence 999999999 75543 44556 8999999999 88 765 89999999999999987 776777777
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-Cc--eEEEeecCCCCeEE
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-GK--TIASLCGHLDFSFA 352 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~--~~~~l~~h~~~v~~ 352 (475)
...+. +++|+|++ +++++.++.|++||+++ +. .......|...+.+
T Consensus 150 ~~~v~-----------------------------~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 198 (342)
T 1yfq_A 150 KNKIF-----------------------------TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198 (342)
T ss_dssp CCCEE-----------------------------EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred CCceE-----------------------------EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeE
Confidence 88888 99999987 88999999999999998 54 33445568889999
Q ss_pred EEEec-CCCEEEEEeCCCeEEEEECCCC-----CceEEEEecCCC---------ceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 353 SAWHP-NGVTFATGNQDKTCRIWDLRNL-----SESVAVLKGNLG---------AIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 353 ~~~sp-~g~~l~t~s~dg~v~iwd~~~~-----~~~~~~~~~~~~---------~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
++|+| +++++++++.||.|++|+++.. ......+..|.. .|.+++|+|+|++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 99999 9999999999999999999874 377888888765 99999999999999999999999999
Q ss_pred ECCCCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEecCC
Q 011924 418 DVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 418 d~~~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
|+.+++.+..+..| .+.|.+++ |++++|++|+.|+.
T Consensus 279 d~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 279 NLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 99999999998888 99999999 99999999999997
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-30 Score=253.42 Aligned_cols=239 Identities=21% Similarity=0.313 Sum_probs=204.8
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeee----------cCCCCceeEEEEEeCCCCCeEEEEEe
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTT----------YDDNAITNAVEIYGSPSGAVHFTASN 254 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~----------~~~~~~v~~l~~~~s~~g~~~l~s~s 254 (475)
+..+|++++| ++++|++|+.+|.|++|++............ ..|...|.+++| +|++..+|++++
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~ 119 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW--YPHDTGMFTSSS 119 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE--CTTCTTCEEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE--ccCCCcEEEEEe
Confidence 3457999999 6799999999999999999876543211111 258899999999 994444599999
Q ss_pred CCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC---CCcEEEEEeCCCcEEE
Q 011924 255 NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP---DGKLLIIVGDNPDGLL 331 (475)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~dg~i~i 331 (475)
.|+.|++||+.+++....+.+...+. +++++| ++.++++++.++.|++
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFNFEETVY-----------------------------SHHMSPVSTKHCLVAVGTRGPKVQL 170 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEE-----------------------------EEEECSSCSSCCEEEEEESSSSEEE
T ss_pred CCCeEEEeeCCCCccceeccCCCcee-----------------------------eeEeecCCCCCcEEEEEcCCCeEEE
Confidence 99999999999999999888888888 889988 4559999999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCCceEEEE---------------ecCCCceEE
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESVAVL---------------KGNLGAIRS 395 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~~~~~~~---------------~~~~~~v~~ 395 (475)
||+++++.+..+.+|...|.+++|+|+++ +|++++.||.|++||++....++..+ ..|...|.+
T Consensus 171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 99999999999999999999999999988 59999999999999998755566665 567889999
Q ss_pred EEEccCCCEEEEEcCCCeEEEEECCCCe-----------------------------------------------eEEEE
Q 011924 396 IRYTSDGRYMATAEPADFVHVYDVKSGY-----------------------------------------------EKEQE 428 (475)
Q Consensus 396 l~~spdg~~la~~~~dg~i~iwd~~~~~-----------------------------------------------~~~~~ 428 (475)
++|+|+|++|++++.|+.|++||+.++. .+..+
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 330 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML 330 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence 9999999999999999999999987643 34555
Q ss_pred eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 429 IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 429 ~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..|.+.|.+++|+|++++|++|+.|+.+.
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 67889999999999999999999998774
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-29 Score=251.50 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=226.3
Q ss_pred CCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCC
Q 011924 141 SKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDR 218 (475)
Q Consensus 141 ~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~ 218 (475)
+...++. ..++.|.+|+..+++....+ .+ +...|.++++ .+.+|++|+.||.|++|++.+
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~--~~----------------h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQL--SG----------------HDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEE--CC----------------CSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEE--eC----------------CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence 4455555 46799999998877644332 22 3347999999 455999999999999999986
Q ss_pred CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee-----------------------eee-
Q 011924 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK-----------------------HFR- 274 (475)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~-----------------------~~~- 274 (475)
... ...+..|.+.|.++++...+++.. +++++.|++|++||+.++.... .+.
T Consensus 193 ~~~---~~~~~~h~~~v~~l~~~~~~~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 193 GCC---THVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TEE---EEEECCCSSCEEEEEEEESSSCEE-EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CcE---EEEECCCCCccEEEEEecCCCCCE-EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 543 356678999999999965577775 9999999999999998765321 122
Q ss_pred ccccEE-eccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 275 FPWPVN-VSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 275 ~~~~v~-~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
+...+. +++++..++ .+++||..+++.+.... .+.+++|+|+++++++++.|+.|++||+++++++..+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 333332 455555554 58999999988876654 6889999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
.+|...|.+++|+ +++|++++.||+|++||+++ ........ +...+..++|+|++++|++++ ++.|+|||+.+++
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 9999999999997 58999999999999999987 44444433 556778899999999999998 8999999999998
Q ss_pred eEEE-EeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 424 EKEQ-EIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 424 ~~~~-~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.+.. ...|.+.|.+++|+ ++.+++++.+..
T Consensus 424 ~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g 454 (464)
T 3v7d_B 424 LVHANILKDADQIWSVNFK--GKTLVAAVEKDG 454 (464)
T ss_dssp EEESCTTTTCSEEEEEEEE--TTEEEEEEEETT
T ss_pred EEehhhccCCCcEEEEEec--CCEEEEEEEeCC
Confidence 8765 55678899999997 556666655543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=263.01 Aligned_cols=276 Identities=12% Similarity=0.061 Sum_probs=207.0
Q ss_pred ccceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecC
Q 011924 132 QLRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ 208 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~d 208 (475)
.+..+.|+++...|++. .++.|.+|+..++....+..+.+ +...|.+++| ++++|++|+.|
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD----------------HDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC----------------CSSCEEEEEECTTTCCEEEEETT
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec----------------CCceEEEEEEeCCCCEEEEEeCC
Confidence 35566688777777765 57889999987653222211111 3347999999 78999999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe---eeeeee--ccccEEecc
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ---LSKHFR--FPWPVNVSS 283 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~---~~~~~~--~~~~v~~s~ 283 (475)
|.|++|++..............|...|.+++| +|+++. |++++.|+.|++||+.+++ ....+. +...+.
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~--- 150 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW--SPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL--- 150 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEEC--CTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEE---
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEE--CCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeE---
Confidence 99999999876522223556678999999999 999986 8999999999999998876 345554 677888
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC------------------CCceEEEeec
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM------------------TGKTIASLCG 345 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~------------------~~~~~~~l~~ 345 (475)
+++|+|++++|++++.|+.|++||++ .++++..+ +
T Consensus 151 --------------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 203 (377)
T 3dwl_C 151 --------------------------SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P 203 (377)
T ss_dssp --------------------------EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred --------------------------EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence 99999999999999999999999985 35566666 8
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce----EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES----VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~----~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
|...|.+++|+|++++|++++.|++|++||+++ +.. +..+.+|...|.+++|+|+|++|++++.++.+ +|+...
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCceEEEEEECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 999999999999999999999999999999987 444 77888999999999999999999999877655 666542
Q ss_pred Ce-e--------------------------E---------EEE----------------eccCCCeEEEEEcCCCC----
Q 011924 422 GY-E--------------------------K---------EQE----------------IDFFGEISGISFSPDTE---- 445 (475)
Q Consensus 422 ~~-~--------------------------~---------~~~----------------~~~~~~i~~l~fspdg~---- 445 (475)
+. . . ..+ ..|.+.|.++++.+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~ 361 (377)
T 3dwl_C 282 SGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNIT 361 (377)
T ss_dssp ---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEE
T ss_pred CceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceE
Confidence 11 0 0 000 12888999999766543
Q ss_pred eEEEEEecCCcce
Q 011924 446 SLFIGVWDRTYGS 458 (475)
Q Consensus 446 ~l~~~~~D~~~~~ 458 (475)
.|++|+.|+.+..
T Consensus 362 ~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 362 AFTSSGTDGRVVL 374 (377)
T ss_dssp EEEEEETTSEEEE
T ss_pred EEEeecCCCcEEE
Confidence 5999999998753
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-31 Score=271.17 Aligned_cols=242 Identities=10% Similarity=-0.039 Sum_probs=192.3
Q ss_pred eeEEEEEE--c------CcEEEEEecCceEEEEeCCCCCce--------EEEeeecCCCCceeEEEEEeCCCCCeEEEEE
Q 011924 190 TQVSTLAV--K------DKLLVAGGFQGELICKHLDRPGVS--------FCSRTTYDDNAITNAVEIYGSPSGAVHFTAS 253 (475)
Q Consensus 190 ~~v~~l~~--~------~~~lvsg~~dg~i~vw~~~~~~~~--------~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~ 253 (475)
..|.+++| + +++|++|+.||+|++|++...... .....+..|...|.+++| ++++ .|++|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~--s~~~--~lasg 283 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF--LSPT--TVVCG 283 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE--SSSS--EEEEE
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe--cCCC--eEEEE
Confidence 36889998 3 469999999999999999765321 001245678899999999 8764 49999
Q ss_pred eCCCeEEEEECCCCe-eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeE--EECCCC-cEEEEEeCCCc
Q 011924 254 NNDCGVRDFDMGKYQ-LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHS--SQSPDG-KLLIIVGDNPD 328 (475)
Q Consensus 254 s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~--~~sp~g-~~l~~~~~dg~ 328 (475)
+.||+|++||++++. ....+. |..+|. ++ +|+|+| .+||+++.|++
T Consensus 284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~-----------------------------sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYIL-----------------------------SVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp ETTSEEEEEETTBCSSCSEEEECSSSCEE-----------------------------EEEEECCTTSCCEEEEEETTSE
T ss_pred eCCCEEEEEECCCCCCceEEeecccccEE-----------------------------EEEEEcCCCCCeEEEEeccCCe
Confidence 999999999998764 333444 778888 88 578888 89999999999
Q ss_pred EEEEECCCCceEEEeecCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEE
Q 011924 329 GLLVDSMTGKTIASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la 406 (475)
|+|||+++++++..+.+|.. .|.+++|+|++..+++++.|++|++||++. ..++..+.+|.+.|++++|+|+|++|+
T Consensus 335 vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred EEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEE
Confidence 99999999888777777763 588999999999999999999999999987 677778889999999999999999999
Q ss_pred EEcCCCeEEEEECCCC--------------------------------------------eeEEEEeccCCCeEEEEEcC
Q 011924 407 TAEPADFVHVYDVKSG--------------------------------------------YEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~--------------------------------------------~~~~~~~~~~~~i~~l~fsp 442 (475)
+|+.|++|+|||+..+ ..+..+.+|.+.|.+++|+|
T Consensus 414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 9999999999985321 11122334667899999999
Q ss_pred CCC---eEEEEEecCCcceEEEEEeec
Q 011924 443 DTE---SLFIGVWDRTYGSLLEYGRCR 466 (475)
Q Consensus 443 dg~---~l~~~~~D~~~~~ll~~~~~~ 466 (475)
++. .|++|+.||.++ ++.+...|
T Consensus 494 ~~~~~~~lAsg~~~g~vr-lw~l~~~~ 519 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLT-LEYLSLEH 519 (524)
T ss_dssp STTTTTEEEEECTTSEEE-EEECSCC-
T ss_pred CCCccHHHHhhccCceEE-EEEccccc
Confidence 964 888988888774 44444443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-29 Score=237.53 Aligned_cols=266 Identities=15% Similarity=0.218 Sum_probs=216.1
Q ss_pred eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 136 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
+-|+++ +.|....+++|++|+..+++...++...+ +...|++++| ++++|++|+.||.|++
T Consensus 31 l~WS~~-~~lAvg~D~tV~iWd~~tg~~~~~~~~~~----------------~~~~V~~v~~~~~~~~l~sgs~Dg~v~i 93 (318)
T 4ggc_A 31 VDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSSAEVQL 93 (318)
T ss_dssp EEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecC----------------CCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 346644 56777789999999999998877765443 2246999999 8899999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-eeeeee-ccccEEeccCCceEEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPWPVNVSSSYCIILLC 291 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~s~~~~~l~~~ 291 (475)
|++.+.+.. ....+|...+.++.. ++. ++++++.++.+++|+..... .+..+. +...+.
T Consensus 94 w~~~~~~~~---~~~~~h~~~~~~~~~----~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 154 (318)
T 4ggc_A 94 WDVQQQKRL---RNMTSHSARVGSLSW----NSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC----------- 154 (318)
T ss_dssp EETTTTEEE---EEEECCSSCEEEEEE----ETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-----------
T ss_pred eecCCceeE---EEecCccceEEEeec----CCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceE-----------
Confidence 999876543 556678877777655 455 49999999999999987653 334444 777788
Q ss_pred EEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce----EEEeecCCCCeEEEEEecCCCE-E--EE
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT----IASLCGHLDFSFASAWHPNGVT-F--AT 364 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~----~~~l~~h~~~v~~~~~sp~g~~-l--~t 364 (475)
++++++++++|++++.|+.|++||+++++. ......|.+.|.+++++|.+.. + ++
T Consensus 155 ------------------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 155 ------------------GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp ------------------EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred ------------------EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 999999999999999999999999987653 4455678899999999996543 3 45
Q ss_pred EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc--CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcC
Q 011924 365 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE--PADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 365 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
++.+++|++||.+. ...... ..+...+..+.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|.+++|+|
T Consensus 217 ~~~~~~i~lwd~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 217 GTSDRHIRIWNVCS-GACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp CTTTCEEEEEETTT-CCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred cCCCCEEEEEeccc-cccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 67889999999976 444444 34566899999999999887654 789999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCcc
Q 011924 443 DTESLFIGVWDRTYG 457 (475)
Q Consensus 443 dg~~l~~~~~D~~~~ 457 (475)
+|++|++|+.|+++.
T Consensus 295 dg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 295 DGATVASAAADETLR 309 (318)
T ss_dssp TSSCEEEEETTTEEE
T ss_pred CCCEEEEEecCCeEE
Confidence 999999999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-30 Score=257.17 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=220.3
Q ss_pred ccceeEEec-CCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec
Q 011924 132 QLRNLVWAT-SKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF 207 (475)
Q Consensus 132 ~lr~l~~~~-~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~ 207 (475)
....+.|.+ +...+++. .++.|.+|+..+....... ...+...+...|.+++| ++++|++|+.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY-------------SSSLTYDCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-------------SCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-------------ceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 345556877 66666664 5789999997541100000 00011113457999999 7899999999
Q ss_pred CceEEEEeCC---CCCceE-----EE--eeecC--CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-
Q 011924 208 QGELICKHLD---RPGVSF-----CS--RTTYD--DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR- 274 (475)
Q Consensus 208 dg~i~vw~~~---~~~~~~-----~~--~~~~~--~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 274 (475)
||.|++|++. ...... +. ..+.. +...+.++.+.+++++.. +++++.|+.|++||+++++.+..+.
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL-LVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE-EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999999995 222111 00 11112 566788888767888885 9999999999999999999888877
Q ss_pred --ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeE
Q 011924 275 --FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSF 351 (475)
Q Consensus 275 --~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~v~ 351 (475)
+...|. +++|+|++++|++++.||.|++||+++++++..+. +|...|.
T Consensus 211 ~~h~~~v~-----------------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 211 SPRHGAVS-----------------------------SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp CGGGCCEE-----------------------------EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred CCCCCceE-----------------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence 467888 99999999999999999999999999999999886 7888999
Q ss_pred EEEEec----CCCEEEEEeCCCeEEEEECCCCCceEEEEec--------------------------CCCceEEEEEccC
Q 011924 352 ASAWHP----NGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------------------------NLGAIRSIRYTSD 401 (475)
Q Consensus 352 ~~~~sp----~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--------------------------~~~~v~~l~~spd 401 (475)
+++|+| ++.+|++|+.|++|++||+++ ++++..+.+ |...|++++|+ +
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 997765 678999999999999999987 677776664 44568889999 7
Q ss_pred CCEEEEEcCCCeEEEEECCCCeeEEEEec-------------------------------------cCCCeEEEEEcCC-
Q 011924 402 GRYMATAEPADFVHVYDVKSGYEKEQEID-------------------------------------FFGEISGISFSPD- 443 (475)
Q Consensus 402 g~~la~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------~~~~i~~l~fspd- 443 (475)
+++|++|+.|+.|++||+.+++....+.. |...|.+++|+++
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 79999999999999999999887666654 7889999999998
Q ss_pred -CCeEEEEEecCCcce
Q 011924 444 -TESLFIGVWDRTYGS 458 (475)
Q Consensus 444 -g~~l~~~~~D~~~~~ 458 (475)
+.+|++|+.||.+..
T Consensus 420 ~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 420 ETPLLVACDNSGLIGI 435 (437)
T ss_dssp SSEEEEEEETTSCEEE
T ss_pred CceEEEEEcCCceEEE
Confidence 789999999998753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=257.65 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=202.5
Q ss_pred cceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc---eEEEeeecCCCCceeEEEEEeCCC----C---CeEEEEEeCCC
Q 011924 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV---SFCSRTTYDDNAITNAVEIYGSPS----G---AVHFTASNNDC 257 (475)
Q Consensus 188 ~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~v~~l~~~~s~~----g---~~~l~s~s~dg 257 (475)
+..+|++++|..++|++|+.||.|++|++..... ......+..|...|.+++| +|+ + .. |++++.|+
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~g~~~~~-l~s~~~dg 91 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV--LQAIERDAFELCL-VATTSFSG 91 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEE--EEEEETTTEEEEE-EEEEETTS
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEE--ecccccCCccccE-EEEEcCCC
Confidence 3458999999779999999999999999987660 0012445578899999999 888 7 75 89999999
Q ss_pred eEEEEECCCCee-----eeeee-c-----cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC----CCCcE-EE
Q 011924 258 GVRDFDMGKYQL-----SKHFR-F-----PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS----PDGKL-LI 321 (475)
Q Consensus 258 ~v~iwd~~~~~~-----~~~~~-~-----~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s----p~g~~-l~ 321 (475)
.|++|++.+++. ...+. + ...+. +++|+ |++++ |+
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~~~~l~ 142 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-----------------------------ALKWGASNDRLLSHRLV 142 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-----------------------------EEEEECCC----CEEEE
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEE-----------------------------EEEEeeccCCCCceEEE
Confidence 999999988775 55555 4 37788 99999 99999 99
Q ss_pred EEeCCCcEEEEECCC------CceEE-----Eee-------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceE
Q 011924 322 IVGDNPDGLLVDSMT------GKTIA-----SLC-------GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 383 (475)
Q Consensus 322 ~~~~dg~i~iwd~~~------~~~~~-----~l~-------~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~ 383 (475)
+++.++.|++||+++ ++.+. .+. .|...+.+++|+|++ +|++++.|+.|++||+++ .+++
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~ 220 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPL 220 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-Ccee
Confidence 999999999999998 66665 774 488999999999999 999999999999999987 7888
Q ss_pred EEEec---C---CCceEEEEEccCCCEEEEEcCC---CeEEEEECCCCeeEEEEec-------------cCCCeEEEEEc
Q 011924 384 AVLKG---N---LGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEID-------------FFGEISGISFS 441 (475)
Q Consensus 384 ~~~~~---~---~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~fs 441 (475)
..+.. | ...|.+++|+|++++|++++.| +.|++||+.++..+..+.. |.+.|.+++|+
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC
Confidence 89988 8 8999999999999999999999 9999999999999888888 99999999999
Q ss_pred CCCCeEEEEEecCCc
Q 011924 442 PDTESLFIGVWDRTY 456 (475)
Q Consensus 442 pdg~~l~~~~~D~~~ 456 (475)
|++++|++++.|+.+
T Consensus 301 ~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 301 DSGETLCSAGWDGKL 315 (397)
T ss_dssp SSSSEEEEEETTSEE
T ss_pred CCCCEEEEEeCCCeE
Confidence 999999999988765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-30 Score=255.96 Aligned_cols=281 Identities=9% Similarity=0.069 Sum_probs=210.5
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCce---------EEEeccCCCCCCCCCCCCcccc-ccceeEEEEEE--cC-
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRS---------QVLNVSGHVAPSEKHPGSLLEG-FTQTQVSTLAV--KD- 199 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~--~~- 199 (475)
..+.|+++...|++. .++.|.+|+..++... .+..+.+|.... ..+.. ....+|.+++| ++
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEF-----DYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEE-----EGGGTEEECCCCCEEEECCCCS
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccc-----cccccccccCceEEEEEcCCCC
Confidence 445577777777775 5799999998766521 111222221000 00000 00146899999 44
Q ss_pred -cEEEEEecCceEEEEeCCCCCce------------------------------------E-EEeeecCCCCceeEEEEE
Q 011924 200 -KLLVAGGFQGELICKHLDRPGVS------------------------------------F-CSRTTYDDNAITNAVEIY 241 (475)
Q Consensus 200 -~~lvsg~~dg~i~vw~~~~~~~~------------------------------------~-~~~~~~~~~~~v~~l~~~ 241 (475)
.+|++|+.||.|++|++...... . ......+|...|.+++|
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~- 185 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI- 185 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE-
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE-
Confidence 68999999999999998653221 0 01224679999999999
Q ss_pred eCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeee--------eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 242 GSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHF--------RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 242 ~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~--------~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
+|+++. |++| .|+.|++||+.+ ++....+ .+...+. +++
T Consensus 186 -~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~~ 233 (447)
T 3dw8_B 186 -NSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-----------------------------AAE 233 (447)
T ss_dssp -CTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-----------------------------EEE
T ss_pred -cCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceE-----------------------------EEE
Confidence 999986 7787 799999999984 4444432 2566677 999
Q ss_pred ECCCC-cEEEEEeCCCcEEEEECCCCce----EEEeecCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 313 QSPDG-KLLIIVGDNPDGLLVDSMTGKT----IASLCGHLD------------FSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 313 ~sp~g-~~l~~~~~dg~i~iwd~~~~~~----~~~l~~h~~------------~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
|+|++ ++|++++.|+.|++||+++++. +..+.+|.. .|.+++|+|++++|++++. ++|++||
T Consensus 234 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 234 FHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD 312 (447)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred ECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence 99998 9999999999999999999887 788888876 8999999999999999999 9999999
Q ss_pred CCCCCceEEEEecCCCc---------------eEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-----------
Q 011924 376 LRNLSESVAVLKGNLGA---------------IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI----------- 429 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~---------------v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~----------- 429 (475)
++..++++..+.+|... +..++|+|+|++|++|+.|+.|+|||+.++..+. +.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~ 391 (447)
T 3dw8_B 313 LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTV 391 (447)
T ss_dssp TTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCB
T ss_pred CCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccc
Confidence 98657788888887532 2349999999999999999999999999887653 22
Q ss_pred ----------------------ccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 430 ----------------------DFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 430 ----------------------~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+...|..++|+|++++|++++.++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 392 LKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp CCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred cCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 2335688999999999999998874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-30 Score=245.33 Aligned_cols=200 Identities=16% Similarity=0.208 Sum_probs=181.2
Q ss_pred EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-----Ceeeeeee-ccccEEeccCCceEEEEEEeeccc
Q 011924 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMT 298 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~ 298 (475)
...+.+|.+.|++++| +|++..+|++|+.|++|++|++.. +..+..+. |...|.
T Consensus 10 ~~~l~gH~~~V~~l~~--~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~------------------ 69 (319)
T 3frx_A 10 RGTLEGHNGWVTSLAT--SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ------------------ 69 (319)
T ss_dssp EEEECCCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE------------------
T ss_pred EEEEccccceEEEEEc--cCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE------------------
Confidence 4567899999999999 987755699999999999999854 23445555 778888
Q ss_pred ceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 299 EKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 299 ~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
+++|+|+|++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++
T Consensus 70 -----------~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~- 137 (319)
T 3frx_A 70 -----------DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK- 137 (319)
T ss_dssp -----------EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-
T ss_pred -----------EEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCceEEEEecCCCceEEEEEccC------CCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSD------GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spd------g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
+.++..+.+|...|.+++|+|. +.+|++++.|+.|++||+.++.....+.+|.+.|.+++|+|+|++|++|+.
T Consensus 138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 5678889999999999999995 458999999999999999999988889999999999999999999999999
Q ss_pred cCCcc
Q 011924 453 DRTYG 457 (475)
Q Consensus 453 D~~~~ 457 (475)
|+++.
T Consensus 217 dg~i~ 221 (319)
T 3frx_A 217 DGEIM 221 (319)
T ss_dssp TCEEE
T ss_pred CCeEE
Confidence 98764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-31 Score=269.60 Aligned_cols=226 Identities=7% Similarity=-0.038 Sum_probs=180.0
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEE-EeeecCCCCceeEEEEEeCCC------CCeEEEEEeCCCeEEEEECCCCeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFC-SRTTYDDNAITNAVEIYGSPS------GAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~l~~~~s~~------g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
+++.|++|+.||+|++|++........ ...+.+|.+.|..++| +|+ +. +|++++.||+|++||+.++...
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~w--sp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKW--HEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEE--CSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSS
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEE--CCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccc
Confidence 456789999999999999976553221 2334567788999999 886 34 5999999999999999765421
Q ss_pred -----------eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-
Q 011924 271 -----------KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG- 337 (475)
Q Consensus 271 -----------~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~- 337 (475)
..+. +..+|. +++|+|++ .|++|+.||+|++||++++
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~-----------------------------sv~~s~~~-~lasgs~DgtV~lWD~~~~~ 298 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLIT-----------------------------TFDFLSPT-TVVCGFKNGFVAEFDLTDPE 298 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEE-----------------------------EEEESSSS-EEEEEETTSEEEEEETTBCS
T ss_pred cccceeecCceEEEEcCCCCEE-----------------------------EEEecCCC-eEEEEeCCCEEEEEECCCCC
Confidence 1222 455666 99999864 8999999999999999976
Q ss_pred ceEEEeecCCCCeEEE--EEecCC-CEEEEEeCCCeEEEEECCCCCceEEEEecCCC--ceEEEEEccCCCEEEEEcCCC
Q 011924 338 KTIASLCGHLDFSFAS--AWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 338 ~~~~~l~~h~~~v~~~--~~sp~g-~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~--~v~~l~~spdg~~la~~~~dg 412 (475)
.+...+.+|...|.++ +|+|+| ++||||+.|++|+|||+++ .+++..+.+|.. .|.+++|+|+++.|++++.|+
T Consensus 299 ~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~ 377 (524)
T 2j04_B 299 VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS 377 (524)
T ss_dssp SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSS
T ss_pred CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCeEEEeCCCC
Confidence 4556789999999999 578888 8999999999999999987 566666666543 588999999999999999999
Q ss_pred eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|++||++++.++..+.+|.+.|.+++|||+|++|++|+.|+++.
T Consensus 378 tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 378 SLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp EEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred cEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 999999999988888889999999999999999999999999874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=258.95 Aligned_cols=227 Identities=13% Similarity=0.120 Sum_probs=192.7
Q ss_pred EEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee
Q 011924 194 TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 273 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (475)
+++.++++|++|+.+|.|++|++...... .....+ ..+....+ +|+++. |++++.|+.|++||+.+++....+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~-~~~~~~~~--~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGS---KMLKRA-DYTAVDTA--KLQMRR-FILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETT---TTSCSC-CEEEEEEE--CSSSCE-EEEEETTSCEEEECTTSCEEEEET
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccccee---eEEecC-CceEEEEE--ecCCCE-EEEEECCCCEEEEeCCCcceeeec
Confidence 34448999999999999999998764432 222333 34444455 899986 999999999999999999888876
Q ss_pred e-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q 011924 274 R-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 274 ~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
. |...|. +++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+
T Consensus 136 ~~h~~~v~-----------------------------~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 186 (420)
T 3vl1_A 136 QAHVSEIT-----------------------------KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186 (420)
T ss_dssp TSSSSCEE-----------------------------EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEE
T ss_pred ccccCccE-----------------------------EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEE
Confidence 4 888999 9999999999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC---CC---------------------ceEEEEEccCCCEEEEE
Q 011924 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN---LG---------------------AIRSIRYTSDGRYMATA 408 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~---~~---------------------~v~~l~~spdg~~la~~ 408 (475)
++|+|++++|++++.|++|++||+++ ++++..+..+ .. .+.+++|+|+|++|+++
T Consensus 187 ~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 187 IAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 99999999999999999999999987 7777777642 23 44445568899999999
Q ss_pred cCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCC-eEEEEEecCCcc
Q 011924 409 EPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTE-SLFIGVWDRTYG 457 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~-~l~~~~~D~~~~ 457 (475)
+.||.|++||++++..+..+.. |.+.|.+++|+|+++ +|++|+.|+.+.
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 9999999999999887777654 778999999999999 999999987653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=277.53 Aligned_cols=300 Identities=12% Similarity=0.073 Sum_probs=219.8
Q ss_pred cceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
.+.+.|++ ...|+. ..++.|++|+..+++....+. +...|++++| ++++|++|+.+|
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-------------------~~~~V~~v~~sp~g~~l~sgs~dg 120 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-------------------VPGKITSIDTDASLDWMLIGLQNG 120 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-------------------CSSCEEEEECCTTCSEEEEEETTS
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-------------------CCCCEEEEEECCCCCEEEEEcCCC
Confidence 45666777 444555 467999999988876544332 1136899999 899999999999
Q ss_pred eEEEEeCCCCCceE-EE-------eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec------
Q 011924 210 ELICKHLDRPGVSF-CS-------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF------ 275 (475)
Q Consensus 210 ~i~vw~~~~~~~~~-~~-------~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------ 275 (475)
.|++|++....... .. .....|.+.|.+++| +|++..++++|+.|+.| +||+++++.+..+..
T Consensus 121 ~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~--sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~ 197 (902)
T 2oaj_A 121 SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW--NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFA 197 (902)
T ss_dssp CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE--ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTC
T ss_pred cEEEEECCCCccccceeccccccccccccCCCCeEEEEE--ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcC
Confidence 99999998654321 11 223568899999999 99765568999999999 999999888776652
Q ss_pred ----------------cccEEeccCCceEE------EEEEeecccceEEEE----------------------eeeeeeE
Q 011924 276 ----------------PWPVNVSSSYCIIL------LCRLLNFMTEKVIIC----------------------LLCLQHS 311 (475)
Q Consensus 276 ----------------~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~----------------------~~~i~~~ 311 (475)
...+.|+|++..++ .+++||..+++.+.. ...|.++
T Consensus 198 ~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v 277 (902)
T 2oaj_A 198 PGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKV 277 (902)
T ss_dssp CCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEE
T ss_pred CCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEE
Confidence 23456999998885 589999988776542 1147778
Q ss_pred EEC----CCC-cEEEEEeC-------------------------------------------------------------
Q 011924 312 SQS----PDG-KLLIIVGD------------------------------------------------------------- 325 (475)
Q Consensus 312 ~~s----p~g-~~l~~~~~------------------------------------------------------------- 325 (475)
+|+ |++ .+|++|+.
T Consensus 278 ~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~ 357 (902)
T 2oaj_A 278 YWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY 357 (902)
T ss_dssp EEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH
T ss_pred EEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC
Confidence 884 443 34444433
Q ss_pred ---------------CCcEEEEECCCCceEEE-----------------------------------------eecCCCC
Q 011924 326 ---------------NPDGLLVDSMTGKTIAS-----------------------------------------LCGHLDF 349 (475)
Q Consensus 326 ---------------dg~i~iwd~~~~~~~~~-----------------------------------------l~~h~~~ 349 (475)
++.|++|++.+|..... +.+|...
T Consensus 358 ~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~ 437 (902)
T 2oaj_A 358 FAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRT 437 (902)
T ss_dssp HHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCC
T ss_pred cCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCC
Confidence 34455555544432211 1233334
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCCCCce----EEEE--e-----cCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 350 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSES----VAVL--K-----GNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~----~~~~--~-----~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
+.+++|+|++++||+|+.|++|++||+... .. ...+ . +|...|++++|+|+|++||+|+.||+|+|||
T Consensus 438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 438 KRQKLPAEYGTAFITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp CCCCCCCSEEEEEEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCcccccccCcEEEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 444566789999999999999999999763 21 1111 1 6888999999999999999999999999999
Q ss_pred CCCCe---------------------------------------------eEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 419 VKSGY---------------------------------------------EKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 419 ~~~~~---------------------------------------------~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+.+++ ++..+..|.+.|++++||||| +||+|+.|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D 595 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA 595 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence 97652 355667799999999999999 99999999
Q ss_pred CCcc
Q 011924 454 RTYG 457 (475)
Q Consensus 454 ~~~~ 457 (475)
+++.
T Consensus 596 ~tv~ 599 (902)
T 2oaj_A 596 GSLM 599 (902)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 8864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=259.17 Aligned_cols=297 Identities=11% Similarity=0.046 Sum_probs=225.0
Q ss_pred ceeEEecCCC-eEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c-CcEEEEEecC
Q 011924 134 RNLVWATSKH-DVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K-DKLLVAGGFQ 208 (475)
Q Consensus 134 r~l~~~~~~~-~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~-~~~lvsg~~d 208 (475)
..+.|.+... .++. ..++.+.+|+..+++....+ .++.. ....|.+++| + +++|++|+.+
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~--~~~~~-------------~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD--RTHHK-------------QGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE--CSSSC-------------TTCCEEEEEECSTTCCEEEEEETT
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee--cccCC-------------CCceEEEEEECCCCCCEEEEEeCC
Confidence 3444666654 3444 45689999997665543332 21100 1126899999 6 8899999999
Q ss_pred ceEEEEeCCCCCceEEEeee-c---CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-----cc-
Q 011924 209 GELICKHLDRPGVSFCSRTT-Y---DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-----WP- 278 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~-~---~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----~~- 278 (475)
|.|++|++...... ..+ . .|...|.+++| + ++.. +++++.|+.|++||+.+++.+..+... ..
T Consensus 229 g~i~vwd~~~~~~~---~~~~~~~~~~~~~v~~~~~--~-~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 229 RKISCFDGKSGEFL---KYIEDDQEPVQGGIFALSW--L-DSQK-FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp CCEEEEETTTCCEE---EECCBTTBCCCSCEEEEEE--S-SSSE-EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred CeEEEEECCCCCEe---EEecccccccCCceEEEEE--c-CCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 99999999876544 333 4 78899999999 8 7775 899999999999999988887766632 11
Q ss_pred --EEeccCCceEE------EEEEeecccceEEEEe---------------------------------------------
Q 011924 279 --VNVSSSYCIIL------LCRLLNFMTEKVIICL--------------------------------------------- 305 (475)
Q Consensus 279 --v~~s~~~~~l~------~~~v~d~~~~~~~~~~--------------------------------------------- 305 (475)
+.++ ++..++ .+++||..+++.+...
T Consensus 302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 302 VGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred eEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 1121 222221 2344444333222111
Q ss_pred ------------------------------------------------------------------eeeeeEEECCCCcE
Q 011924 306 ------------------------------------------------------------------LCLQHSSQSPDGKL 319 (475)
Q Consensus 306 ------------------------------------------------------------------~~i~~~~~sp~g~~ 319 (475)
..+.+++|+ +++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 458 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY 458 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence 123344444 667
Q ss_pred EEEEeC-CCcEEEEECCCCceE-EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEE
Q 011924 320 LIIVGD-NPDGLLVDSMTGKTI-ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSI 396 (475)
Q Consensus 320 l~~~~~-dg~i~iwd~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l 396 (475)
|++++. ++.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.|+.|++||+.+ ++++..+.+ |...|+++
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~ 537 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKINAI 537 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCEEEE
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCceeEE
Confidence 777887 888999998877655 66778999999999999999999999999999999977 788888887 99999999
Q ss_pred EEcc----------CCCEEEEEcCCCeEEEEECCCC-eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 397 RYTS----------DGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 397 ~~sp----------dg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+|+| ++++|++++.|+.|++||+.++ ..+..+..|.+.|.+++|+|+++ |++++.|+.+.
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 9999 9999999999999999999987 67777888999999999999999 99999998774
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=284.36 Aligned_cols=301 Identities=16% Similarity=0.203 Sum_probs=249.4
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEec
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~ 207 (475)
...+.|+++...+++. .++.|.+|+..+++....+. + +...|.+++| ++.++++|+.
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~----------------~~~~v~~~~~~~~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--E----------------HSEQVNCCHFTNKSNHLLLATGSN 721 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--C----------------CSSCEEEEEECSSSSCCEEEEEET
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc--C----------------CCCcEEEEEEecCCCceEEEEEeC
Confidence 3445577777777765 56899999998876544432 1 2346889999 4568999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec------------
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF------------ 275 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------------ 275 (475)
||.|++|++...... ....+|.+.|++++| +|+++. +++++.||+|++||+.+++....+..
T Consensus 722 d~~v~vwd~~~~~~~---~~~~~h~~~v~~~~~--sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1249)
T 3sfz_A 722 DFFLKLWDLNQKECR---NTMFGHTNSVNHCRF--SPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795 (1249)
T ss_dssp TSCEEEEETTSSSEE---EEECCCSSCEEEEEE--CSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------
T ss_pred CCeEEEEECCCcchh---heecCCCCCEEEEEE--ecCCCE-EEEEECCCeEEEEeCCCCcccceecccccccccCCccc
Confidence 999999999876544 566789999999999 999986 99999999999999998877665542
Q ss_pred -----cccEEeccCCceEE-----EEEEeecccceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 276 -----PWPVNVSSSYCIIL-----LCRLLNFMTEKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 276 -----~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
...+.|++++..++ .+.+|+..++....... .+.+++|+|+++++++++.++.|++|++.++..+
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE
T ss_pred cccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 23455889988885 68899999888776554 6789999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC----------------------------ceEEEE------
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS----------------------------ESVAVL------ 386 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~----------------------------~~~~~~------ 386 (475)
..+.+|...|.+++|+|++++|++++.|++|++||+.... ..+...
T Consensus 876 ~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 876 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence 9999999999999999999999999999999999964210 000011
Q ss_pred --ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 387 --KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 387 --~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+...+.+++|+|+|+++++|+.+|.|++||+.++.....+..|.+.|.+++|+|+|++|++++.|+.+.
T Consensus 956 ~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp EEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred EEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 11245789999999999999999999999999999998888889999999999999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=270.04 Aligned_cols=268 Identities=12% Similarity=0.097 Sum_probs=228.8
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
.+.+.|.++...|++. .++.|.+|+..+++....+. + +..+|.+++| ++++|++|+.+|
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~----------------~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--V----------------TETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--C----------------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--c----------------CCCcEEEEEEeCCCCEEEEEeCCC
Confidence 4556688877777775 46899999987776544332 1 2346899999 899999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-eeeeeee-ccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-QLSKHFR-FPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~s~~~~~ 287 (475)
.|++|++.+.... .....|.+.|.+++| +|+++. +++++.||+|++|++.++ .....+. +..++.
T Consensus 78 ~i~vw~~~~~~~~---~~~~~~~~~v~~~~~--s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~------- 144 (814)
T 3mkq_A 78 RIRVFNYNTGEKV---VDFEAHPDYIRSIAV--HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM------- 144 (814)
T ss_dssp EEEEEETTTCCEE---EEEECCSSCEEEEEE--CSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE-------
T ss_pred eEEEEECCCCcEE---EEEecCCCCEEEEEE--eCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE-------
Confidence 9999999876544 455678899999999 999986 889999999999999876 5555555 778888
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEEec--CCCEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHP--NGVTFA 363 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~-~~v~~~~~sp--~g~~l~ 363 (475)
+++|+| ++..|++++.++.|++||+.++.....+..+. ..+.+++|+| ++++|+
T Consensus 145 ----------------------~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 145 ----------------------CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp ----------------------EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred ----------------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 999999 89999999999999999999888877777655 8899999999 999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
+++.||+|++||++. ++++..+.+|...|++++|+|+|++|++++.||.|++||+.++..+..+..+...+.+++|+|+
T Consensus 203 ~~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp EECTTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EEeCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 999999999999977 7889999999999999999999999999999999999999999999898889999999999999
Q ss_pred CCeE-EEEEecC
Q 011924 444 TESL-FIGVWDR 454 (475)
Q Consensus 444 g~~l-~~~~~D~ 454 (475)
|..+ ++++.|+
T Consensus 282 ~~~~~~~~~~~~ 293 (814)
T 3mkq_A 282 GRKNYIASGFDN 293 (814)
T ss_dssp CGGGEEEEEETT
T ss_pred CCceEEEEEeCC
Confidence 9742 4444443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=256.19 Aligned_cols=237 Identities=15% Similarity=0.179 Sum_probs=199.5
Q ss_pred ceeEEEEEE--c-CcEEEEEecCceEEEEeCCCC-------CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe
Q 011924 189 QTQVSTLAV--K-DKLLVAGGFQGELICKHLDRP-------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (475)
Q Consensus 189 ~~~v~~l~~--~-~~~lvsg~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~ 258 (475)
...|+++++ + +.+|++|+.+|.|++|++... +.......+..|...+.+++| +|++..+|++|+.||+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW--NPNLNGYLLSASDDHT 205 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE--CTTSTTEEEEECTTSC
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe--CCCCCCeEEEEeCCCe
Confidence 347888888 3 579999999999999999752 111112455678889999999 9998845999999999
Q ss_pred EEEEECCCCee-------eeee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcE
Q 011924 259 VRDFDMGKYQL-------SKHF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDG 329 (475)
Q Consensus 259 v~iwd~~~~~~-------~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i 329 (475)
|++|++.++.. ...+ .+...|. +++|+| ++.+|++++.++.|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-----------------------------~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVE-----------------------------DVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEE-----------------------------EEEECSSCTTEEEEEETTSEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEe-----------------------------eeEEeCCCCCEEEEEeCCCeE
Confidence 99999987322 2233 2666777 999999 78899999999999
Q ss_pred EEEECCCC---ceEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-E
Q 011924 330 LLVDSMTG---KTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-Y 404 (475)
Q Consensus 330 ~iwd~~~~---~~~~~l~~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~ 404 (475)
++||++++ +++..+..|...|.+++|+|++. +|++|+.||+|++||+++...++..+..|...|++++|+|+++ +
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 99999977 57788889999999999999886 7899999999999999987788999999999999999999995 7
Q ss_pred EEEEcCCCeEEEEECCC--------------CeeEEEEeccCCCeEEEEEcCCCC-eEEEEEecCCc
Q 011924 405 MATAEPADFVHVYDVKS--------------GYEKEQEIDFFGEISGISFSPDTE-SLFIGVWDRTY 456 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~D~~~ 456 (475)
|++++.|+.|+|||+.. ...+....+|.+.|.+++|+|+++ +|++++.|+.+
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence 99999999999999986 245666667889999999999999 78888888765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=251.91 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=203.4
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
.+.++++++++|++|+.||.|++|++.+.... ..+.+|.+.|.+++| +|++ ++++|+.||+|++||+.+++.+
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~---~~~~~h~~~V~~l~~--~~~~--~l~s~s~dg~i~vwd~~~~~~~ 196 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFL---LQLSGHDGGVWALKY--AHGG--ILVSGSTDRTVRVWDIKKGCCT 196 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEE--CSTT--EEEEEETTSCEEEEETTTTEEE
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCCcEE---EEEeCCCcCEEEEEE--cCCC--EEEEEeCCCCEEEEECCCCcEE
Confidence 46788999999999999999999999875533 556789999999999 8887 5999999999999999999998
Q ss_pred eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC--CCCcEEEEEeCCCcEEEEECCCCce--------
Q 011924 271 KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS--PDGKLLIIVGDNPDGLLVDSMTGKT-------- 339 (475)
Q Consensus 271 ~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s--p~g~~l~~~~~dg~i~iwd~~~~~~-------- 339 (475)
..+. +..++. +++|+ ++++++++++.|+.|++||++++..
T Consensus 197 ~~~~~h~~~v~-----------------------------~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 197 HVFEGHNSTVR-----------------------------CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp EEECCCSSCEE-----------------------------EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C
T ss_pred EEECCCCCccE-----------------------------EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 8887 888898 88888 5889999999999999999987652
Q ss_pred ---------------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 340 ---------------IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 340 ---------------~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
+..+.+|...+.++ +|+++++++|+.|++|++||+++ .+++..+.+|...|.+++|+|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTE
T ss_pred CcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCE
Confidence 55677898888876 67889999999999999999987 7889999999999999999999999
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|++|+.|+.|++||+.++..+..+..|.+.|.+++|+ +.+|++|+.|+++.
T Consensus 325 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIR 375 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence 9999999999999999999999999999999999998 57999999998764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=259.38 Aligned_cols=228 Identities=16% Similarity=0.161 Sum_probs=186.2
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECC
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~ 265 (475)
..|+||+| ++++|++|+.||.|+|||+....... .....+|.+.|++|+| +|. +. +|++|+.|++|++||++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f--~p~~~~-~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKF--NPLNTN-QFYASSMEGTTRLQDFK 195 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEE--CSSCTT-EEEEECSSSCEEEEETT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEE--eCCCCC-EEEEEeCCCEEEEeecc
Confidence 46999999 46799999999999999998665432 3445689999999999 984 55 59999999999999998
Q ss_pred CCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 266 KYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 266 ~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
++....... ....+. +++|+|++++|++|+.+|.|++||++ ++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~ 245 (435)
T 4e54_B 196 GNILRVFASSDTINIWFC-----------------------------SLDVSASSRMVVTGDNVGNVILLNMD-GKELWN 245 (435)
T ss_dssp SCEEEEEECCSSCSCCCC-----------------------------CEEEETTTTEEEEECSSSBEEEEESS-SCBCCC
T ss_pred CCceeEEeccCCCCccEE-----------------------------EEEECCCCCEEEEEeCCCcEeeeccC-cceeEE
Confidence 765433332 222344 89999999999999999999999986 566778
Q ss_pred eecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 343 LCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
+.+|...|.+++|+|++. +|++|+.|++|+|||+++... .+....+|...|++++|+|+|++|++++.|+.|+|||+
T Consensus 246 ~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 899999999999999875 788999999999999986332 22334568899999999999999999999999999999
Q ss_pred CCCeeEEEEeccCC------CeEEEEEcCCCCeEEEEE
Q 011924 420 KSGYEKEQEIDFFG------EISGISFSPDTESLFIGV 451 (475)
Q Consensus 420 ~~~~~~~~~~~~~~------~i~~l~fspdg~~l~~~~ 451 (475)
.++.....+..|.. .+..+.|+|++..++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred CCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence 99988777766542 244567888888887764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=251.24 Aligned_cols=253 Identities=15% Similarity=0.245 Sum_probs=215.0
Q ss_pred CCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCC
Q 011924 141 SKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP 219 (475)
Q Consensus 141 ~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~ 219 (475)
+...+++ ..++.|.+|+..+++....+. + +...|.++++++++|++|+.||.|++|++.+.
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~----------------h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILT--G----------------HTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEEC--C----------------CSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--C----------------CCCcEEEEEECCCEEEEEcCCCeEEEEECCCC
Confidence 4444544 567899999988776544432 1 23479999999999999999999999999876
Q ss_pred CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee---eeee-ccccEEeccCCceEEEEEEee
Q 011924 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-FPWPVNVSSSYCIILLCRLLN 295 (475)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~s~~~~~l~~~~v~d 295 (475)
... .....|...|.++++ ++ . ++++|+.|+.|++||+.+++.. ..+. +...+.
T Consensus 204 ~~~---~~~~~h~~~v~~l~~--~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~--------------- 260 (435)
T 1p22_A 204 EML---NTLIHHCEAVLHLRF--NN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--------------- 260 (435)
T ss_dssp CEE---EEECCCCSCEEEEEC--CT--T-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE---------------
T ss_pred cEE---EEEcCCCCcEEEEEE--cC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE---------------
Confidence 543 556688999999988 53 3 4999999999999999887654 2333 677777
Q ss_pred cccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 296 FMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
+++| +++++++++.|+.|++||+++++.+..+.+|...|.+++| +++++++|+.|++|++||
T Consensus 261 --------------~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd 322 (435)
T 1p22_A 261 --------------VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 322 (435)
T ss_dssp --------------EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred --------------EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 8888 7899999999999999999999999999999999999999 468999999999999999
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe---------eEEEEeccCCCeEEEEEcCCCCe
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTES 446 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~fspdg~~ 446 (475)
+++ ++++..+.+|...|.+++| ++++|++|+.||.|++||+.++. .+..+..|.+.|.+++| ++.+
T Consensus 323 ~~~-~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~ 397 (435)
T 1p22_A 323 IEC-GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQ 397 (435)
T ss_dssp TTT-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSC
T ss_pred CCC-CCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCE
Confidence 987 7889999999999999999 78899999999999999997665 77788899999999999 7889
Q ss_pred EEEEEecCCcc
Q 011924 447 LFIGVWDRTYG 457 (475)
Q Consensus 447 l~~~~~D~~~~ 457 (475)
|++|+.|+++.
T Consensus 398 l~s~s~Dg~i~ 408 (435)
T 1p22_A 398 IVSSSHDDTIL 408 (435)
T ss_dssp EEECCSSSEEE
T ss_pred EEEEeCCCEEE
Confidence 99999998774
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=256.22 Aligned_cols=271 Identities=15% Similarity=0.145 Sum_probs=204.8
Q ss_pred ceeEEecCC-CeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecC
Q 011924 134 RNLVWATSK-HDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQ 208 (475)
Q Consensus 134 r~l~~~~~~-~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~d 208 (475)
..+.|.+.. +.|.+ ..++.|++|+..++....++.+.|| ...|++|+| ++++|++|+.|
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH----------------~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA----------------GGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSS----------------SCCCCEEEECSSCTTEEEEECSS
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCC----------------CCCEEEEEEeCCCCCEEEEEeCC
Confidence 445576543 44555 4579999999887776665544432 346899998 57899999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCce
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCI 287 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~ 287 (475)
|+|++||+...... .......+...+.+++| +|++.. |++|+.||.|++||++... +..+. |...|.
T Consensus 187 ~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~------- 254 (435)
T 4e54_B 187 GTTRLQDFKGNILR-VFASSDTINIWFCSLDV--SASSRM-VVTGDNVGNVILLNMDGKE-LWNLRMHKKKVT------- 254 (435)
T ss_dssp SCEEEEETTSCEEE-EEECCSSCSCCCCCEEE--ETTTTE-EEEECSSSBEEEEESSSCB-CCCSBCCSSCEE-------
T ss_pred CEEEEeeccCCcee-EEeccCCCCccEEEEEE--CCCCCE-EEEEeCCCcEeeeccCcce-eEEEecccceEE-------
Confidence 99999999753322 11222233445677888 999986 9999999999999997544 44444 788888
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEEE---eecCCCCeEEEEEecCCCEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIAS---LCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~---l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|++. +|++++.|+.|++||+++++.... ..+|...|.+++|+|+|++|+
T Consensus 255 ----------------------~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 255 ----------------------HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp ----------------------EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred ----------------------eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence 999999876 788899999999999987764433 357999999999999999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCC------ceEEEEEccCCCEEEEEcC------------CCeEEEEECCCCeeE
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLG------AIRSIRYTSDGRYMATAEP------------ADFVHVYDVKSGYEK 425 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~------~v~~l~~spdg~~la~~~~------------dg~i~iwd~~~~~~~ 425 (475)
+++.|++|+|||+++ +.....+..|.. .+..+.|+|++.+++++.. ++.|++||+.++..+
T Consensus 313 s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 313 TTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp EEESSSCEEEEESSS-SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred EEcCCCEEEEEECCC-CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 999999999999987 555555554432 2335667777777766642 357999999999888
Q ss_pred EEEe-ccCCCeEEE-EEcCCCCeEEEEEecCCc
Q 011924 426 EQEI-DFFGEISGI-SFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 426 ~~~~-~~~~~i~~l-~fspdg~~l~~~~~D~~~ 456 (475)
..+. .|...|.++ +|+|+|++|++|+ |+++
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 8765 467788887 6999999998875 6654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=249.35 Aligned_cols=231 Identities=13% Similarity=0.166 Sum_probs=195.6
Q ss_pred cceeEEEEEE---cCcEEEEEecCceEEEEeCCCCCce----EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 188 ~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
+...|++++| ++++|++|+.||.|++|++...+.. .+...+.+|...|.+++| +|++..+|++++.|++|+
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW--HPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEE--CSSBTTEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEE--CcCCCCEEEEEcCCCEEE
Confidence 3457999999 6789999999999999999876321 112456688999999999 999855699999999999
Q ss_pred EEECCCCeeeeee--e-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC
Q 011924 261 DFDMGKYQLSKHF--R-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 261 iwd~~~~~~~~~~--~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
+||+.+++.+..+ . +...+. +++|+|++++|++++.|+.|++||++++
T Consensus 158 iwd~~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 158 VWDVGTGAAVLTLGPDVHPDTIY-----------------------------SVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp EEETTTTEEEEEECTTTCCSCEE-----------------------------EEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred EEECCCCCccEEEecCCCCCceE-----------------------------EEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 9999999988888 3 778888 9999999999999999999999999999
Q ss_pred ceEEEe-ecCCCC-eEEEEEecCCCEEEEE---eCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEE-EcC
Q 011924 338 KTIASL-CGHLDF-SFASAWHPNGVTFATG---NQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMAT-AEP 410 (475)
Q Consensus 338 ~~~~~l-~~h~~~-v~~~~~sp~g~~l~t~---s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~-~~~ 410 (475)
+.+..+ .+|.+. +.+++|+|++++|++| +.|++|++||+++...++.... .+...+.+++|+|+|++|++ ++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 999998 788876 8999999999999999 7899999999987555444443 46678999999999999864 557
Q ss_pred CCeEEEEECCCCee-EEEEec--cCCCeEEEEEcCCCCeEEE
Q 011924 411 ADFVHVYDVKSGYE-KEQEID--FFGEISGISFSPDTESLFI 449 (475)
Q Consensus 411 dg~i~iwd~~~~~~-~~~~~~--~~~~i~~l~fspdg~~l~~ 449 (475)
|+.|++||+.++.. +..+.. +.+.|.+++|+|++.++++
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee
Confidence 99999999998864 444443 5589999999999998875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=247.65 Aligned_cols=230 Identities=16% Similarity=0.144 Sum_probs=187.1
Q ss_pred eeEEEEEE--cC-cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 190 TQVSTLAV--KD-KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 190 ~~v~~l~~--~~-~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..|.+++| ++ ++|++|+.||.|++|++....... .....+|...|.+++| +|++..+|++++.|+.|++||+.+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKF--NQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEE--ETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEe--CCCCCCEEEEEeCCCEEEEEECCC
Confidence 46899999 56 899999999999999998766542 2223468999999999 994434599999999999999986
Q ss_pred Ceeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 267 YQLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 267 ~~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
.. ...+. +...+. +++|+|++++|++++.++.|++||+ +++++..
T Consensus 151 ~~-~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~ 199 (383)
T 3ei3_B 151 SV-IQVFAKTDSWDYWYC-----------------------------CVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFK 199 (383)
T ss_dssp CE-EEEEECCCCSSCCEE-----------------------------EEEEETTTTEEEEEETTSEEEEEET-TSCEEEE
T ss_pred Cc-eEEEeccCCCCCCeE-----------------------------EEEECCCCCEEEEECCCCCEEEEEC-CCCEEEE
Confidence 43 33333 235677 9999999999999999999999999 5888999
Q ss_pred eecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCC---CceEEEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEE
Q 011924 343 LCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNL---SESVAVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVY 417 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iw 417 (475)
+.+|...|.+++|+|+++ +|++++.|++|++||++.. ..++..+ +|...|++++|+| +|++|++++.|+.|++|
T Consensus 200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iw 278 (383)
T 3ei3_B 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278 (383)
T ss_dssp EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEE
T ss_pred eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEE
Confidence 999999999999999998 9999999999999999862 3345555 6889999999999 99999999999999999
Q ss_pred ECCCCeeEEEEeccC-----------------CCeEEEEEcCCCCeEEEEEecCCc
Q 011924 418 DVKSGYEKEQEIDFF-----------------GEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 418 d~~~~~~~~~~~~~~-----------------~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|++++..+..+..|. +.+..++|+|+|++ +|+.|+++
T Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i 332 (383)
T 3ei3_B 279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI 332 (383)
T ss_dssp ETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE
T ss_pred ECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE
Confidence 999887766666443 23444566666655 55556554
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=257.30 Aligned_cols=263 Identities=15% Similarity=0.153 Sum_probs=190.1
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc--------eEEEeeecCCC------------CceeEEEEEeCCCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV--------SFCSRTTYDDN------------AITNAVEIYGSPSG 246 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~--------~~~~~~~~~~~------------~~v~~l~~~~s~~g 246 (475)
...|++++| ++++|++|+.||.|++|++..... ..+...+.+|. ..|++++| +|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~ 105 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQK 105 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE--cCCC
Confidence 358999999 899999999999999999986542 11234556787 88999999 9987
Q ss_pred C-eEEEEEeCCCeEEEEECCCCeeeeeee----ccccEEe-ccC----CceEEEEEEeecccce--EE--EEeeeeeeEE
Q 011924 247 A-VHFTASNNDCGVRDFDMGKYQLSKHFR----FPWPVNV-SSS----YCIILLCRLLNFMTEK--VI--ICLLCLQHSS 312 (475)
Q Consensus 247 ~-~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~-s~~----~~~l~~~~v~d~~~~~--~~--~~~~~i~~~~ 312 (475)
. .+|++++.|++|++|++.+++...... ..+.+.. ... -..+.... +...... .. .+...|.+++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD-LMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE-EEEEEEEEEEECSCCSSCCCEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh-eeeeccceEEeccCCCcceEEEE
Confidence 2 248899999999999997655431100 0000000 000 00000000 0000000 00 0112456999
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCC-CceEEE-------eecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCCce-
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMT-GKTIAS-------LCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSES- 382 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~-------l~~h~~~v~~~~~sp~g-~~l~t~s~dg~v~iwd~~~~~~~- 382 (475)
|+|++++|+++ .|+.|++||+++ ++.+.. +.+|...|.+++|+|++ ++|++|+.|++|++||+++ +..
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~ 262 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALC 262 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-Cccc
Confidence 99999999998 899999999984 444442 56899999999999998 9999999999999999987 444
Q ss_pred ---EEEEecCCC------------ceEEEEEccCCCEEEEEcCCCeEEEEECCC-CeeEEEEeccCCC------------
Q 011924 383 ---VAVLKGNLG------------AIRSIRYTSDGRYMATAEPADFVHVYDVKS-GYEKEQEIDFFGE------------ 434 (475)
Q Consensus 383 ---~~~~~~~~~------------~v~~l~~spdg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~------------ 434 (475)
+..+..|.. .|.+++|+|+|++|++++. +.|+|||+++ +..+..+..|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 678888775 8999999999999999998 9999999987 7777777777532
Q ss_pred ---eEEEEEcCCCCeEEEEEecCCcc
Q 011924 435 ---ISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 435 ---i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+..++|+|++++|++|+.|+.+.
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred cccceEEEECCCCCEEEEeccCCEEE
Confidence 33499999999999999987663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=271.55 Aligned_cols=233 Identities=17% Similarity=0.226 Sum_probs=209.8
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
...|.+++| ++.+|++|+.+|.|++|++.+.... ..+..|.+.|.+++| +|+++. |++++.||.|++|++.+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~---~~~~~~~~~v~~~~~--s~~~~~-l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV---RSIQVTETPVRAGKF--IARKNW-IIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEE--EGGGTE-EEEEETTSEEEEEETTT
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE---EEEecCCCcEEEEEE--eCCCCE-EEEEeCCCeEEEEECCC
Confidence 347999999 8999999999999999999875443 455678999999999 999986 89999999999999999
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEee
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLC 344 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~ 344 (475)
++.+..+. +...+. +++|+|++++|++++.||.|++||+.++ .....+.
T Consensus 87 ~~~~~~~~~~~~~v~-----------------------------~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIR-----------------------------SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp CCEEEEEECCSSCEE-----------------------------EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred CcEEEEEecCCCCEE-----------------------------EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 99888887 888899 9999999999999999999999999987 6778889
Q ss_pred cCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecC-CCceEEEEEcc--CCCEEEEEcCCCeEEEEECC
Q 011924 345 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-LGAIRSIRYTS--DGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 345 ~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-~~~v~~l~~sp--dg~~la~~~~dg~i~iwd~~ 420 (475)
+|...|.+++|+| ++++|++++.||+|++||++. ......+..+ ...+.+++|+| ++++|++++.++.|++||+.
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999 899999999999999999977 4555555544 48899999999 99999999999999999999
Q ss_pred CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++..+..+..|.+.|.+++|+|++++|++++.|+.+.
T Consensus 217 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~ 253 (814)
T 3mkq_A 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9999999999999999999999999999999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=246.73 Aligned_cols=278 Identities=12% Similarity=0.095 Sum_probs=211.7
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCC---ceEEEeccCCCC--CCC----C-------------------------
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSS---RSQVLNVSGHVA--PSE----K------------------------- 178 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~---~~~~~~~~~~~~--~~~----~------------------------- 178 (475)
...+.|.+++..|+...++.|.+|+..+++ ....+....... +.. .
T Consensus 7 ~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp CCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 344557777777777888999999988887 333332111000 000 0
Q ss_pred ------CCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCC--CCCceEEEeeecCCCCceeEEEEEeCCCCC
Q 011924 179 ------HPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLD--RPGVSFCSRTTYDDNAITNAVEIYGSPSGA 247 (475)
Q Consensus 179 ------~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~ 247 (475)
.++. ....+...|.+++| ++++| ++|+.+|.|++|++. ....... .....+...|.+++| +|+++
T Consensus 87 ~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~--sp~~~ 162 (450)
T 2vdu_B 87 TAAKVPSPGL-GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFSKRPNAISI--AEDDT 162 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECSSCEEEEEE--CTTSS
T ss_pred cCccccCCCC-CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCCCCceEEEE--cCCCC
Confidence 0000 00012236999999 78886 899999999999998 4443321 112356788999999 99998
Q ss_pred eEEEEEeCCCeEEEEECCCCeeee----eee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC---CcE
Q 011924 248 VHFTASNNDCGVRDFDMGKYQLSK----HFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD---GKL 319 (475)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~----~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~---g~~ 319 (475)
. |++++.++.|++|++.+++... .+. +...|. +++|+|+ +++
T Consensus 163 ~-l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~-----------------------------~~~~sp~~~~~~~ 212 (450)
T 2vdu_B 163 T-VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT-----------------------------DVHLIKDSDGHQF 212 (450)
T ss_dssp E-EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE-----------------------------EEEEEECTTSCEE
T ss_pred E-EEEEeCCCcEEEEecCCcccccccceeeecccCceE-----------------------------EEEEcCCCCCCcE
Confidence 6 8889999999999998876543 433 777888 9999999 999
Q ss_pred EEEEeCCCcEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec----------
Q 011924 320 LIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---------- 388 (475)
Q Consensus 320 l~~~~~dg~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---------- 388 (475)
|++++.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.|++|++||+++ ++++..+..
T Consensus 213 l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 213 IITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCT
T ss_pred EEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhh
Confidence 99999999999999999998877 56899999999999 999999999999999999987 677777753
Q ss_pred ---------------CCCceEEEEEccCCCEEEEEc-CCCeEEEEEC--CCC---eeEEEEeccCCCeEEEEEcCCCCeE
Q 011924 389 ---------------NLGAIRSIRYTSDGRYMATAE-PADFVHVYDV--KSG---YEKEQEIDFFGEISGISFSPDTESL 447 (475)
Q Consensus 389 ---------------~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~i~~l~fspdg~~l 447 (475)
....|.+++|+|++++|++++ .++.|+||++ .++ ..+..+..+ +.|.+++|+|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQV 369 (450)
T ss_dssp TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEE
T ss_pred cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEE
Confidence 235789999999999999998 8999999999 555 566666666 899999999964333
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=243.77 Aligned_cols=262 Identities=13% Similarity=0.100 Sum_probs=198.2
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|.+++| ++++|++|+.+| +++|++....... .. .+ ..+..+++ .++++.++++++.|++|++||+.
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~~-~~-~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---SQ-EM-RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---EE-EC-SCCCEEEE--CTTSSEEEEECSSTTEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---ee-ec-CCeEEEEE--cCCCCEEEEEECCccEEEEEECC
Confidence 3457999999 899999988775 7899987543221 11 11 24677888 78888766788889999999999
Q ss_pred CCeeeeeeeccccEE---eccCCceEE---EEEEeecccc-eEEEEee-eeeeEEECCCCcEEEE--EeCCCcEEEEECC
Q 011924 266 KYQLSKHFRFPWPVN---VSSSYCIIL---LCRLLNFMTE-KVIICLL-CLQHSSQSPDGKLLII--VGDNPDGLLVDSM 335 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~---~s~~~~~l~---~~~v~d~~~~-~~~~~~~-~i~~~~~sp~g~~l~~--~~~dg~i~iwd~~ 335 (475)
+++.+..+.+..++. ++++...++ .+++||+.++ +.+.... ....+++++ .++++ ++.+|.|++||+.
T Consensus 90 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~ 167 (355)
T 3vu4_A 90 KKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQ 167 (355)
T ss_dssp TTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred CCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence 999988887655544 565544443 6899999877 3322111 223456666 56666 5789999999999
Q ss_pred CCc---------------e-EEEeecCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCCceEEEEe-c-CCCceEEE
Q 011924 336 TGK---------------T-IASLCGHLDFSFASAWHPNGVTFATGNQDKT-CRIWDLRNLSESVAVLK-G-NLGAIRSI 396 (475)
Q Consensus 336 ~~~---------------~-~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~-v~iwd~~~~~~~~~~~~-~-~~~~v~~l 396 (475)
+++ + +..+.+|...|.+++|+|+|++||+|+.|++ |+|||+++ ++++..+. + |...|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEE
T ss_pred CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEE
Confidence 765 2 6788999999999999999999999999998 99999987 78888888 5 89999999
Q ss_pred EEccCCCEEEEEcCCCeEEEEECCCCeeEE--EE------------------e---ccCCCeEEEEEcCCCCeEEEEEec
Q 011924 397 RYTSDGRYMATAEPADFVHVYDVKSGYEKE--QE------------------I---DFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~--~~------------------~---~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+|+|+|++|++++.|+.|+|||+..+.... .+ . ........++|+|+|++|++++.|
T Consensus 247 ~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d 326 (355)
T 3vu4_A 247 KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326 (355)
T ss_dssp EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence 999999999999999999999997653111 00 0 011234679999999999999999
Q ss_pred CCcceEE
Q 011924 454 RTYGSLL 460 (475)
Q Consensus 454 ~~~~~ll 460 (475)
+.+..+.
T Consensus 327 g~~~~~~ 333 (355)
T 3vu4_A 327 RMIETFK 333 (355)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 8775443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=253.23 Aligned_cols=224 Identities=9% Similarity=0.069 Sum_probs=171.1
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceE--EEeeecCCCCceeEEEEEeCC--------CCCeEEEEEeCCCeEEEEECCCC
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSP--------SGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~~~s~--------~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
++.+|++|+.|++|++|++....... ....+.+|.+.|++|+| +| +++ +|++++.|++|+|||+.++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~--~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDI--ADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEE--EEEECTTCSEEEE-EEEEEETTSEEEEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEE--ccccccccCCCCC-EEEEEECCCeEEEEECCCC
Confidence 67899999999999999998765332 23456789999999999 66 565 5999999999999999876
Q ss_pred eeee-eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEE---
Q 011924 268 QLSK-HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIAS--- 342 (475)
Q Consensus 268 ~~~~-~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~--- 342 (475)
..+. .+.+..++. +++|+|++ .+|++++.|+.|++||+++++....
T Consensus 177 ~~~~~~~~~~~~v~-----------------------------~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 177 GPILAGYPLSSPGI-----------------------------SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp EEEEEEEECSSCEE-----------------------------EEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred ceeeeecCCCCCcE-----------------------------EEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 6544 455888899 99999987 4799999999999999998764332
Q ss_pred ----------------------eecCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEE----
Q 011924 343 ----------------------LCGHLDFSFASAWH-PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS---- 395 (475)
Q Consensus 343 ----------------------l~~h~~~v~~~~~s-p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~---- 395 (475)
..+|...+.+++|+ |+++.|++++.|+++++||++. ++....+..+...+..
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEc
Confidence 23577888999997 6999999999999999999976 4444444444333332
Q ss_pred --------------EEEcc--CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 396 --------------IRYTS--DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 396 --------------l~~sp--dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..|+| ++.++++|+.|+.|+|||+.++........|..+|.+++|||||++||+++.|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 23333 445778889999999999999988888888999999999999999999999775
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=247.58 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=200.2
Q ss_pred cceeEEEEEEc------CcEEEEEecCceEEEEeCCCCCceEEEeee--cCCCCceeEEEEEeCCC----CCeEEEEEeC
Q 011924 188 TQTQVSTLAVK------DKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSPS----GAVHFTASNN 255 (475)
Q Consensus 188 ~~~~v~~l~~~------~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~l~~~~s~~----g~~~l~s~s~ 255 (475)
+..+|.+++|. ...+++++.+|.|++|++...+........ ..|...|.+++| +|+ |. +|++++.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~l~~~~~ 93 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW--TYDSNTSHP-LLAVAGS 93 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE--EECTTTCCE-EEEEEET
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe--ccCCCCCCC-EEEEecC
Confidence 44589999994 456777788889999999866544333222 236788999999 777 44 5999999
Q ss_pred CCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEE
Q 011924 256 DCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd 333 (475)
||.|++||+.+++.+..+. +..+|. +++|+| ++++|++++.|+.|++||
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~-----------------------------~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAIN-----------------------------ELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEE-----------------------------EEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEEchhceEeeeecCCCCcEE-----------------------------EEEECCCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999988888 888999 999999 999999999999999999
Q ss_pred CCCCceEEEe---ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEE--------------------------
Q 011924 334 SMTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA-------------------------- 384 (475)
Q Consensus 334 ~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~-------------------------- 384 (475)
+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++ .+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCc
Confidence 9999999888 68999999999999999999999999999999976 33222
Q ss_pred --EEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee--------------EEEEeccCCCeEEEEEcCC--CCe
Q 011924 385 --VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--------------KEQEIDFFGEISGISFSPD--TES 446 (475)
Q Consensus 385 --~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~l~fspd--g~~ 446 (475)
....|...|.+++|+ +++|++++.|+.|++||+.++.. +..+..|...|.+++|+|+ +++
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence 233488899999999 77999999999999999987643 6677788999999999999 999
Q ss_pred EEEEEecCCcc
Q 011924 447 LFIGVWDRTYG 457 (475)
Q Consensus 447 l~~~~~D~~~~ 457 (475)
|++|+.|+.+.
T Consensus 302 l~~~~~dg~i~ 312 (366)
T 3k26_A 302 LALGNQVGKLY 312 (366)
T ss_dssp EEEECTTSCEE
T ss_pred EEEEecCCcEE
Confidence 99999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=245.83 Aligned_cols=257 Identities=9% Similarity=-0.021 Sum_probs=195.0
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC-------
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG------- 220 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~------- 220 (475)
..++.|++|+..+++....+.. ..|.++.+... +++|+.||.|++|+.....
T Consensus 55 ~~Dg~v~iwd~~~~~~~~~~~~--------------------~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 55 CEDGALHFTQLKDSKTITTITT--------------------PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EETTEEEEEEESSSSCEEEEEE--------------------ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCCcEEEEECCCCcEEEEEec--------------------CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCC
Confidence 4679999999988776554431 12333444223 8999999999999765311
Q ss_pred ceEEEeeecCCCCceeEEEEEeCC--CCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeec
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSP--SGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNF 296 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~--~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~ 296 (475)
..........|...|.++++ +| +++. +++++.|++|++||+++++....+. +...+.
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~---------------- 174 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYG--HNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS---------------- 174 (343)
T ss_dssp CCEEEEEECCCSSCEEEEEC--CC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCC----------------
T ss_pred cceeEEeecCCCCCEEEEEc--CCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceE----------------
Confidence 11112344467788999999 99 8886 9999999999999999988866553 444677
Q ss_pred ccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE-EEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 011924 297 MTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIW 374 (475)
Q Consensus 297 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~-~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iw 374 (475)
+++|+|+|.+|++|+.|+.|++||+++++.+ ..+.+ |..+|.+++|+|++.+|++++. ++|++|
T Consensus 175 -------------~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iw 240 (343)
T 3lrv_A 175 -------------SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCF 240 (343)
T ss_dssp -------------EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEE
T ss_pred -------------EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEE
Confidence 9999999999999999999999999999987 88888 9999999999999999999994 599999
Q ss_pred ECCCCCceEEEEec---CCCce--EEEEEccCCCEEEEEcC-CCeEEEEECCCCeeEEEEeccCCCeEEEEEcC---CCC
Q 011924 375 DLRNLSESVAVLKG---NLGAI--RSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFFGEISGISFSP---DTE 445 (475)
Q Consensus 375 d~~~~~~~~~~~~~---~~~~v--~~l~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fsp---dg~ 445 (475)
|+++ .+.+..+.. +...+ .+++|+|+|++|++++. ++.|+||++.+....... .++..+.|+| ++.
T Consensus 241 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 241 DLRK-DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFT 315 (343)
T ss_dssp ETTS-STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCC
T ss_pred EcCC-CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccc
Confidence 9987 444333332 33333 36999999999999988 999999999765433222 5677888999 899
Q ss_pred eEEEEEecCCcceEEEEE
Q 011924 446 SLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 446 ~l~~~~~D~~~~~ll~~~ 463 (475)
.|++++.|+.+.-++...
T Consensus 316 ~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 316 DMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEEETTEEEEEEECS
T ss_pred eeEEEecCCceEEEEecC
Confidence 999999999886655443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=243.08 Aligned_cols=233 Identities=11% Similarity=0.038 Sum_probs=200.1
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCC-eEEEEEeCCCeEEEEEC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA-VHFTASNNDCGVRDFDM 264 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~-~~l~s~s~dg~v~iwd~ 264 (475)
+...|++++| ++++|++|+.+|.|++|++..............|...|.+++| +|+++ . |++++.||.|++|++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF--IDNTDLQ-IYVGTVQGEILKVDL 86 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE--EESSSEE-EEEEETTSCEEEECS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEE--CCCCCcE-EEEEcCCCeEEEEEe
Confidence 4457999999 7899999999999999999877643334455588899999999 89988 6 889999999999999
Q ss_pred -CCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-----
Q 011924 265 -GKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT----- 336 (475)
Q Consensus 265 -~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~----- 336 (475)
.+++...... +...|. +++|+| +++|++++.|+.|++||+++
T Consensus 87 ~~~~~~~~~~~~~~~~~v~-----------------------------~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGIC-----------------------------RICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SSSSSEEECBSCCCCSCEE-----------------------------EEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred ccCCceEeccccCCCCceE-----------------------------EEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 8887655555 778888 999999 99999999999999999987
Q ss_pred ----CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-CCc-eEEEEecCCCceEEEEEcc-CCCEEEEEc
Q 011924 337 ----GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN-LSE-SVAVLKGNLGAIRSIRYTS-DGRYMATAE 409 (475)
Q Consensus 337 ----~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~-~~~-~~~~~~~~~~~v~~l~~sp-dg~~la~~~ 409 (475)
++++..+. |...+.+++|+|++ +++++.++.|++||++. ... .......+...|++++|+| ++++|++++
T Consensus 137 ~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp EEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred ccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 77776666 88999999999987 99999999999999986 433 3344456778999999999 999999999
Q ss_pred CCCeEEEEECCCC------eeEEEEeccCC---------CeEEEEEcCCCCeEEEEEecCCc
Q 011924 410 PADFVHVYDVKSG------YEKEQEIDFFG---------EISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 410 ~dg~i~iwd~~~~------~~~~~~~~~~~---------~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.+|.|++|++... .....+..|.. .|.+++|+|++++|++++.|+.+
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 9999999999876 66777777754 99999999999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=277.14 Aligned_cols=234 Identities=16% Similarity=0.181 Sum_probs=210.6
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
+...|++++| ++++|++|+.+|.|++|++.+.... ..+.+|.+.|.+++| +|+|+. +++++.|++|++||+.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---~~~~~h~~~v~~~~~--s~~~~~-l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAF--SSDDSY-IATCSADKKVKIWDSA 687 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETT
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE---EEeccCCCCEEEEEE--ecCCCE-EEEEeCCCeEEEEECC
Confidence 3457999999 8999999999999999999876644 456689999999999 999986 9999999999999999
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
+++.+..+. +...+. +++|+| ++.++++++.|+.|++||+++++++..
T Consensus 688 ~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~ 738 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVN-----------------------------CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738 (1249)
T ss_dssp TCCEEEEEECCSSCEE-----------------------------EEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE
T ss_pred CCceEEEEcCCCCcEE-----------------------------EEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe
Confidence 999988887 788898 999999 566899999999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE------------------------------------
Q 011924 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL------------------------------------ 386 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~------------------------------------ 386 (475)
+.+|...|.+++|+|++++|++++.||+|++||++. +.....+
T Consensus 739 ~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 999999999999999999999999999999999865 3222211
Q ss_pred -------------------ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeE
Q 011924 387 -------------------KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 447 (475)
Q Consensus 387 -------------------~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l 447 (475)
.+|...|.+++|+|+++++++++.++.|++||+.++..+..+.+|.+.|.+++|+|+|++|
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEE
Confidence 2567789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcc
Q 011924 448 FIGVWDRTYG 457 (475)
Q Consensus 448 ~~~~~D~~~~ 457 (475)
++++.|+++.
T Consensus 898 ~s~s~dg~v~ 907 (1249)
T 3sfz_A 898 LTASDDQTIR 907 (1249)
T ss_dssp EEEETTSCEE
T ss_pred EEEeCCCeEE
Confidence 9999998775
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=254.25 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=193.4
Q ss_pred eeEEEEEE---cCcEEEEEecCceEEEEeCCC---CCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 190 TQVSTLAV---KDKLLVAGGFQGELICKHLDR---PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 190 ~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
..|++++| ++.+|++|+.||.|++|++.. ..... ......|.+.|.+++| +|+++. |++++.|++|++||
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~~~~--~~~~~~-l~s~s~dg~i~vwd 139 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTYDCSSTVTQITM--IPNFDA-FAVSSKDGQIIVLK 139 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEEECSSCEEEEEE--CTTSSE-EEEEETTSEEEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-eeeeccCCCCEEEEEE--eCCCCE-EEEEeCCCEEEEEE
Confidence 47899988 468999999999999999865 22111 1222358899999999 999886 99999999999999
Q ss_pred CC---CCeeeeeeecc--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE--ECCCCcEEEEEeCCCcEEEEECCC
Q 011924 264 MG---KYQLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS--QSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 264 ~~---~~~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~--~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
+. +++....+... ..+.+++.+ .. ..+.++. ++|++.+|++++.|+.|++||+++
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNFG------------KN------EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGGS------------SC------CCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred eccccCCceeeccccceeEEEEccCcc------------cc------cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 95 45444433311 111222110 00 0111444 778999999999999999999999
Q ss_pred CceEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-cCCCceEEEEEc----cCCCEEEEEc
Q 011924 337 GKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYT----SDGRYMATAE 409 (475)
Q Consensus 337 ~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~s----pdg~~la~~~ 409 (475)
++++..+.+ |...|.+++|+|++++|++|+.||+|++||++. ++++..+. .|..+|++++|+ |++++|++++
T Consensus 202 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 202 LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 999999998 889999999999999999999999999999987 78888876 677899999665 5688999999
Q ss_pred CCCeEEEEECCCCeeEEEEecc--------------------------CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 410 PADFVHVYDVKSGYEKEQEIDF--------------------------FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~~~--------------------------~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|+.|+|||+.++..+..+..| .+.|.+++|+ ++++|++|+.|+.+.
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 9999999999999888777644 3458889999 778999999898763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=241.52 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=187.4
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEecC
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQ 208 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~d 208 (475)
+.+.|.++...|+.. .++.|++|+..++....+..+.+ +..+|.+++| ++++|++|+.|
T Consensus 17 ~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g----------------H~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 17 HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG----------------HEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC----------------CSSCEEEEEECCGGGSSCEEEEETT
T ss_pred EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC----------------CCccEEEEEeCCCCCCCEEEEEECC
Confidence 444577777777664 57899999987664433333333 2347999998 27899999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEECCCCee---eeeee-ccccEEec
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQL---SKHFR-FPWPVNVS 282 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd~~~~~~---~~~~~-~~~~v~~s 282 (475)
|+|++|++...... +...+.+|...|++++| +|+ +.. |++|+.|++|++|++..+.. ...+. |...+.
T Consensus 81 ~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~--~p~~~g~~-lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~-- 154 (316)
T 3bg1_A 81 RKVIIWREENGTWE-KSHEHAGHDSSVNSVCW--APHDYGLI-LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN-- 154 (316)
T ss_dssp SCEEEECCSSSCCC-EEEEECCCSSCCCEEEE--CCTTTCSC-EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC--
T ss_pred CEEEEEECCCCcce-EEEEccCCCCceEEEEE--CCCCCCcE-EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc--
Confidence 99999999865322 23456689999999999 887 654 99999999999999987532 22222 555666
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCC-----------------CcEEEEEeCCCcEEEEECCCC---ceEEE
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-----------------GKLLIIVGDNPDGLLVDSMTG---KTIAS 342 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-----------------g~~l~~~~~dg~i~iwd~~~~---~~~~~ 342 (475)
+++|+|+ +++|++++.|+.|++||++.+ +++..
T Consensus 155 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 155 ---------------------------AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp ---------------------------CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred ---------------------------eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence 7888886 478999999999999999755 46778
Q ss_pred eecCCCCeEEEEEecCC----CEEEEEeCCCeEEEEECCCCC---ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 343 LCGHLDFSFASAWHPNG----VTFATGNQDKTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g----~~l~t~s~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
+.+|...|.+++|+|++ ++||+++.|++|+|||++... .....+..|...|.+++|+|+|++||+++.|+.|+
T Consensus 208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287 (316)
T ss_dssp CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence 89999999999999986 899999999999999997521 12344567888999999999999999999999999
Q ss_pred EEECC
Q 011924 416 VYDVK 420 (475)
Q Consensus 416 iwd~~ 420 (475)
||+..
T Consensus 288 lw~~~ 292 (316)
T 3bg1_A 288 LWKES 292 (316)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99975
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=235.87 Aligned_cols=200 Identities=14% Similarity=0.188 Sum_probs=174.1
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC--Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
.++.+|...|.+++| +|+|+. |++|+.|++|++|++.. .+.+..+. |..+|.
T Consensus 3 ~~~~~h~~~V~~~~~--s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~---------------------- 57 (297)
T 2pm7_B 3 VIANAHNEMIHDAVM--DYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW---------------------- 57 (297)
T ss_dssp EECCSCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE----------------------
T ss_pred eeccCCcCceEEEEE--CCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE----------------------
Confidence 345689999999999 999996 99999999999999974 35566666 888999
Q ss_pred EEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEEecC--CCEEEEEeCCCeEEEEEC
Q 011924 303 ICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPN--GVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 303 ~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~ 376 (475)
+++|+| ++++|++++.|+.|++||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+
T Consensus 58 -------~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~ 130 (297)
T 2pm7_B 58 -------RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130 (297)
T ss_dssp -------EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred -------EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence 999987 48999999999999999999874 56778889999999999997 899999999999999999
Q ss_pred CCCCc-eEEEEecCCCceEEEEEccC-------------CCEEEEEcCCCeEEEEECCCCe----eEEEEeccCCCeEEE
Q 011924 377 RNLSE-SVAVLKGNLGAIRSIRYTSD-------------GRYMATAEPADFVHVYDVKSGY----EKEQEIDFFGEISGI 438 (475)
Q Consensus 377 ~~~~~-~~~~~~~~~~~v~~l~~spd-------------g~~la~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l 438 (475)
+.... ....+.+|...|.+++|+|+ +++|++|+.|+.|+|||+.++. ....+.+|.+.|.++
T Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210 (297)
T ss_dssp CSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred cCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE
Confidence 86422 25677889999999999997 5799999999999999998765 455677899999999
Q ss_pred EEcCCC---CeEEEEEecCCcc
Q 011924 439 SFSPDT---ESLFIGVWDRTYG 457 (475)
Q Consensus 439 ~fspdg---~~l~~~~~D~~~~ 457 (475)
+|+|++ .+|++++.|+++.
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEE
T ss_pred EECCCCCCceEEEEEECCCcEE
Confidence 999995 8999999999875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=242.32 Aligned_cols=229 Identities=17% Similarity=0.215 Sum_probs=199.2
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
.+.+++|.++.+++++.+|.|++|++....... .....|...|.+++| +|+++. |++|+.||.|++||+.+++.+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~--~~~~~~~~~v~~v~~--s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSA--LAETDESTYVASVKW--SHDGSF-LSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCEEE--EEECCTTCCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE--eeecCCCCCEEEEEE--CCCCCE-EEEECCCCeEEEEECcCCeEE
Confidence 466788877888999999999999998766542 333448889999999 999986 899999999999999999888
Q ss_pred eeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC-CCceEEEeecCCC
Q 011924 271 KHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLD 348 (475)
Q Consensus 271 ~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~l~~h~~ 348 (475)
..+. +...+. +++| ++.+|++++.++.|++||++ .+..+..+.+|..
T Consensus 170 ~~~~~~~~~v~-----------------------------~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 170 RTMAGHQARVG-----------------------------CLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp EEECCCSSCEE-----------------------------EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEecCCCCceE-----------------------------EEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 8876 788888 8888 56799999999999999999 5677888999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC-CEEEEEc--CCCeEEEEECCCCeeE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAE--PADFVHVYDVKSGYEK 425 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg-~~la~~~--~dg~i~iwd~~~~~~~ 425 (475)
.|.+++|+|++++|++|+.|++|++||+++ ..++..+..|...|.+++|+|++ .++++++ .|+.|++||+.++..+
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 999999999999999999999999999987 78888899999999999999977 4666655 7999999999999877
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEE--ecCCcc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGV--WDRTYG 457 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~--~D~~~~ 457 (475)
..+. +.+.|.+++|+|++++|++++ .|+.+.
T Consensus 298 ~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 298 NTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp EEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred EEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 7664 678899999999999999965 676553
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-27 Score=250.19 Aligned_cols=294 Identities=14% Similarity=0.107 Sum_probs=236.9
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCC----CceEEEeccCCCCCCCCCCCCcccccccee-EEEEEE----cCcEEE
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTS----SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ-VSTLAV----KDKLLV 203 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~----~~~~lv 203 (475)
...+.|+++...|++..++.+.+|+..++ +....+ .+ +... |.+++| ++++|+
T Consensus 21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~--~~----------------h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF--TG----------------HGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE--CT----------------TTTSCEEEEEECSSTTCCEEE
T ss_pred eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEE--ec----------------CCCceEEEEEECcCCCCCEEE
Confidence 45566888888888888999999998766 333222 21 2235 888888 468999
Q ss_pred EEecCceEEEEeCCCCC-----ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC----CeEEEEECCCCeeeeeee
Q 011924 204 AGGFQGELICKHLDRPG-----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 204 sg~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d----g~v~iwd~~~~~~~~~~~ 274 (475)
+|+.+|.|++|++.... .......+..|...|.+++| +|+++. +++++.+ +.|++|+ .++.+..+.
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~-l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--DFEGRR-LCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--CTTSSE-EEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEE--eCCCCE-EEEeccCCCCccEEEEEE--CCCcceeee
Confidence 99999999999996431 12224556678899999999 999997 7777777 6888888 455555554
Q ss_pred -cc---ccEEeccCCc-eEE------EEEEeecccceEEEEee-------eeeeEEECCC-CcEEEEEeCCCcEEEEECC
Q 011924 275 -FP---WPVNVSSSYC-IIL------LCRLLNFMTEKVIICLL-------CLQHSSQSPD-GKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 275 -~~---~~v~~s~~~~-~l~------~~~v~d~~~~~~~~~~~-------~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~ 335 (475)
+. ..+.|+|++. .++ .+++||..+++....+. .|.+++|+|+ +++|++++.++.|++||++
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 43 3455899987 443 68999999988877654 5889999999 9999999999999999999
Q ss_pred CCceEEEe-e---cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC----CCceEEEEEccCCCEEEE
Q 011924 336 TGKTIASL-C---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN----LGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 336 ~~~~~~~l-~---~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~l~~spdg~~la~ 407 (475)
+++.+..+ . +|...|.+++|+ ++++|++++.|++|++||+++ ++.+..+..+ ...+.++.|+ ++++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 314 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS 314 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEE
T ss_pred CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeC-CCCeEEE
Confidence 99999999 6 899999999999 999999999999999999987 7778888776 3577888885 8999999
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++.++.|++||+.++..+..+..|.+.|.+++| |+ |++++.|+.+
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i 359 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRI 359 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCE
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeE
Confidence 999999999999998888888888888888888 76 5566665544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-29 Score=245.58 Aligned_cols=224 Identities=20% Similarity=0.248 Sum_probs=188.8
Q ss_pred EEEEEecCceEEEEeCCCCCce-EEEeeecCCCCceeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCC-------eeee
Q 011924 201 LLVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKY-------QLSK 271 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~-------~~~~ 271 (475)
++++|+.+|.|++|++...+.. .....+.+|.+.|.+++| +| ++. +|++|+.||+|++|++.++ +.+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~--~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 125 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAW--CPHNDN-VIASGSEDCTVMVWEIPDGGLVLPLREPVI 125 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEE--CTTCTT-EEEEEETTSEEEEEECCTTCCSSCBCSCSE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEe--CCCCCC-EEEEEeCCCeEEEEEccCCCCccccCCceE
Confidence 3345788999999999765322 112456689999999999 99 676 4999999999999999887 4455
Q ss_pred eee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEEe--ecCC
Q 011924 272 HFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASL--CGHL 347 (475)
Q Consensus 272 ~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~l--~~h~ 347 (475)
.+. |...|. +++|+|++ ++|++++.|+.|++||+++++.+..+ .+|.
T Consensus 126 ~~~~h~~~v~-----------------------------~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 176 (402)
T 2aq5_A 126 TLEGHTKRVG-----------------------------IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176 (402)
T ss_dssp EEECCSSCEE-----------------------------EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred EecCCCCeEE-----------------------------EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence 555 778888 99999998 69999999999999999999999999 7899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE-ecCCCc-eEEEEEccCCCEEEEE---cCCCeEEEEECCCC
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL-KGNLGA-IRSIRYTSDGRYMATA---EPADFVHVYDVKSG 422 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-~~~~~~-v~~l~~spdg~~la~~---~~dg~i~iwd~~~~ 422 (475)
..|.+++|+|++++|++++.|++|++||+++ ++.+..+ .+|.+. +.+++|+|+|++|++| +.++.|++||+.++
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 9999999999999999999999999999987 7777777 677765 8999999999999999 78999999999886
Q ss_pred ee-EEE-EeccCCCeEEEEEcCCCCeEEEEE-ecCCcc
Q 011924 423 YE-KEQ-EIDFFGEISGISFSPDTESLFIGV-WDRTYG 457 (475)
Q Consensus 423 ~~-~~~-~~~~~~~i~~l~fspdg~~l~~~~-~D~~~~ 457 (475)
.. +.. ...+...+.+++|+|++++|++++ .|+.+.
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence 54 222 235678899999999999998665 577653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=269.59 Aligned_cols=237 Identities=14% Similarity=0.161 Sum_probs=202.6
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEE
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd 263 (475)
+...|++++| ++++|++|+.||.|++|++..... .+.....+|.+.|.+++| +|+ ++. +++|+.||+|++||
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~--s~~~~~~~-l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDW--AHPKFGTI-LASCSYDGKVLIWK 83 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEE--CCTTSCSE-EEEEETTSCEEEEE
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEe--cCCCCCCE-EEEEeCCCeEEEEE
Confidence 3457999999 789999999999999999874332 334567789999999999 877 775 99999999999999
Q ss_pred CCCCe--eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCC-
Q 011924 264 MGKYQ--LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTG- 337 (475)
Q Consensus 264 ~~~~~--~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~- 337 (475)
+.+++ ....+. +..+|. +++|+|+ ++.+++++.||.|++||++++
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~-----------------------------~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVN-----------------------------SVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp EETTEEEEEEEECCCSSCEE-----------------------------EEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred CCCCcccccccccCCCCCeE-----------------------------EEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 98876 444444 778888 9999999 999999999999999999877
Q ss_pred -ceEEEeecCCCCeEEEEEec-------------CCCEEEEEeCCCeEEEEECCCCC---ceEEEEecCCCceEEEEEcc
Q 011924 338 -KTIASLCGHLDFSFASAWHP-------------NGVTFATGNQDKTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTS 400 (475)
Q Consensus 338 -~~~~~l~~h~~~v~~~~~sp-------------~g~~l~t~s~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp 400 (475)
.....+.+|...|.+++|+| ++.+|++|+.||+|++||++... .+...+.+|.+.|++++|+|
T Consensus 135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence 34556788999999999999 58999999999999999998643 45677888999999999999
Q ss_pred C---CCEEEEEcCCCeEEEEECCCCe-----eEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 401 D---GRYMATAEPADFVHVYDVKSGY-----EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 401 d---g~~la~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+ |++|++++.||.|++||+.++. .......|.+.|.+++|+|+|++|++|+.|+.+.
T Consensus 215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence 9 8999999999999999998864 2223334778999999999999999999998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=230.88 Aligned_cols=224 Identities=14% Similarity=0.151 Sum_probs=196.0
Q ss_pred ceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 189 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 189 ~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
...|.++++ ++++|++|+.||.|++|++...... .....|...|.+++| +|+++. +++++.|+.|++|++...
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~---~~~~~~~~~v~~~~~--~~~~~~-l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLG---TVVYTGQGFLNSVCY--DSEKEL-LLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEE---EEEEECSSCEEEEEE--ETTTTE-EEEEETTSCEEEEETTCC
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEE---EEeecCCccEEEEEE--CCCCCE-EEEecCCCeEEEEEeeec
Confidence 347999998 8999999999999999999754433 555678899999999 999986 999999999999998653
Q ss_pred ---eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 268 ---QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 268 ---~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
+....+. +..++. +++| +++++++++.++.|++|| .++.+..+
T Consensus 92 ~~~~~~~~~~~~~~~i~-----------------------------~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVC-----------------------------SLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TTSCC-CEECCCSSCEE-----------------------------EEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred CCCCcccchhhcccCEE-----------------------------EEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 4444444 677788 8888 678999999999999999 77888899
Q ss_pred ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 344 CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 344 ~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
..|...+.+++|+| +++++++++.|+.|++||. ......+.. +...+.+++|+|+++ |++++.++.|++||+++
T Consensus 139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 99999999999999 9999999999999999994 567777777 889999999999998 89999999999999999
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++.+..+..|.+.|.+++|+|++ .|++++.|+.+
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence 99999999999999999999999 68888888765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=239.91 Aligned_cols=251 Identities=13% Similarity=0.198 Sum_probs=214.3
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..+.++++++++|++|+.||.|++|++.+.... ..+.+|.+.|.++.+ + ++ ++++|+.||+|++||+.+++.
T Consensus 120 ~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~--~--~~-~l~s~~~dg~i~vwd~~~~~~ 191 (445)
T 2ovr_B 120 HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL---RTLVGHTGGVWSSQM--R--DN-IIISGSTDRTLKVWNAETGEC 191 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEE---EECCCCSSCEEEEEE--E--TT-EEEEEETTSCEEEEETTTTEE
T ss_pred CcEEEEEEcCCEEEEEECCCcEEEEECCCCcEE---EEEcCCCCCEEEEEe--c--CC-EEEEEeCCCeEEEEECCcCcE
Confidence 357889999999999999999999999876544 566789999999999 5 44 599999999999999999998
Q ss_pred eeeee-ccccEE-eccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCC
Q 011924 270 SKHFR-FPWPVN-VSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 270 ~~~~~-~~~~v~-~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~ 337 (475)
+..+. +...+. +..++..++ .+++||..+++...... .+.++++ +++++++++.|+.|++||++++
T Consensus 192 ~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 269 (445)
T 2ovr_B 192 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE 269 (445)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred EEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence 88776 555554 222333342 68999999988776554 5778888 7889999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 338 ~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
+++..+.+|...|.+++| ++.++++++.|++|++||+++ ++++..+.+|...+.++.++ +++|++++.||.|++|
T Consensus 270 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 344 (445)
T ss_dssp EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEE
Confidence 999999999999999999 889999999999999999987 78889999999999888774 6799999999999999
Q ss_pred ECCCCeeEEEEec---cCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 418 DVKSGYEKEQEID---FFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 418 d~~~~~~~~~~~~---~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|+.++..+..+.. |.+.|.+++|+ +++|++|+.|+.+.
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK 385 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEE
Confidence 9999998888876 77899999996 57999999998663
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=247.60 Aligned_cols=193 Identities=16% Similarity=0.089 Sum_probs=168.1
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC--CCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG--KYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~--~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
|.+.|.+++| +|+|+.++++++.|++|++|++. +++.+..+. +...+.
T Consensus 101 ~~~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~------------------------- 153 (450)
T 2vdu_B 101 IYSYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN------------------------- 153 (450)
T ss_dssp CCCCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-------------------------
T ss_pred cCCceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-------------------------
Confidence 3346999999 99999866899999999999998 777777663 567788
Q ss_pred eeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE----EeecCCCCeEEEEEecC---CCEEEEEeCCCeEEEEECCC
Q 011924 306 LCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA----SLCGHLDFSFASAWHPN---GVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~----~l~~h~~~v~~~~~sp~---g~~l~t~s~dg~v~iwd~~~ 378 (475)
+++|+|++++|++++.++.+++|++.+++... .+.+|...|.+++|+|+ +++|++|+.|++|++||++.
T Consensus 154 ----~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 154 ----AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp ----EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred ----EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999999999999999999998877544 77889999999999999 99999999999999999987
Q ss_pred CCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-------------------------cC
Q 011924 379 LSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-------------------------FF 432 (475)
Q Consensus 379 ~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-------------------------~~ 432 (475)
+..+.. +.+|.+.|++++|+ +|++|++++.|+.|+|||+.+++.+..+.. ..
T Consensus 230 -~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 230 -CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp -TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred -CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 565655 66899999999999 999999999999999999999988877753 23
Q ss_pred CCeEEEEEcCCCCeEEEEE-ecCCc
Q 011924 433 GEISGISFSPDTESLFIGV-WDRTY 456 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~~~-~D~~~ 456 (475)
..|.+++|+|++++|++++ .|+.+
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeE
Confidence 5689999999999999998 66544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-27 Score=230.54 Aligned_cols=264 Identities=15% Similarity=0.183 Sum_probs=216.3
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
+..+.|+++...|++. .++.|.+|+..+++....+. + +...|.+++| ++++|++++.+|
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~----------------h~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--G----------------HTGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--C----------------CSSCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--h----------------cCCcEEEEEEcCCCCEEEEEeCCC
Confidence 4555677777777775 47899999988776544332 1 2347999999 789999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEEEECCCCeeee-----------ee
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMGKYQLSK-----------HF 273 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~iwd~~~~~~~~-----------~~ 273 (475)
.|++|++....... ... +...+.+++| +|+++. +++++.+ +.|++|++....... .+
T Consensus 97 ~i~iwd~~~~~~~~---~~~-~~~~v~~~~~--~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 97 SIKLWDVSNGQCVA---TWK-SPVPVKRVEF--SPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEEEEETTTCCEEE---EEE-CSSCEEEEEE--CTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred eEEEEECCCCcEEE---Eee-cCCCeEEEEE--ccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 99999998766542 222 6778999999 999986 7788788 999999987643211 11
Q ss_pred e------ccccEEeccCCceEE------EEEEeeccc-ceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCC
Q 011924 274 R------FPWPVNVSSSYCIIL------LCRLLNFMT-EKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMT 336 (475)
Q Consensus 274 ~------~~~~v~~s~~~~~l~------~~~v~d~~~-~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 336 (475)
. ....+.|++++..++ .+++||..+ ++...... .|.+++|+|++++|++++.++.|++||+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 1 223455888888775 589999998 56555444 688999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeCCC--------------eEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--------------TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg--------------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
++.+..+. +...+.+++|+|+++++++++.++ .+++||+.. .+++..+.+|...|++++|+|+|
T Consensus 250 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 250 LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCEEEEEECTTS
T ss_pred Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcEEEEEECCCC
Confidence 99998888 788899999999999999999988 899999977 78899999999999999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCe
Q 011924 403 RYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~~~~~ 423 (475)
++|++++.||.|+||++.++.
T Consensus 328 ~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SEEEEEETTSEEEEEEECHHH
T ss_pred CEEEEEcCCCeEEEEECcccc
Confidence 999999999999999998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=241.32 Aligned_cols=234 Identities=8% Similarity=0.073 Sum_probs=192.7
Q ss_pred cceeEEEEEE--cCc-EEEEEec---CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC---CCeEEEEEeCCCe
Q 011924 188 TQTQVSTLAV--KDK-LLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS---GAVHFTASNNDCG 258 (475)
Q Consensus 188 ~~~~v~~l~~--~~~-~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~---g~~~l~s~s~dg~ 258 (475)
+...|.+++| ++. ++++|+. +|.|++|++....... .....|...|.+++| +|+ +.. |++++.|+.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~v~~~~~--~~~~~~~~~-l~~~~~dg~ 91 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--LREIEKAKPIKCGTF--GATSLQQRY-LATGDFGGN 91 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE--EEEEEESSCEEEEEC--TTCCTTTCC-EEEEETTSC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc--eeeecccCcEEEEEE--cCCCCCCce-EEEecCCCe
Confidence 3458999999 564 5556666 9999999998766442 333467889999999 998 565 999999999
Q ss_pred EEEEECCCCe-eeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeE------EECCCCcEEEEEeCCCcEE
Q 011924 259 VRDFDMGKYQ-LSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHS------SQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 259 v~iwd~~~~~-~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~------~~sp~g~~l~~~~~dg~i~ 330 (475)
|++||+.+++ .+..+. +...+. ++ +|+|++++|++++.|+.|+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIIN-----------------------------AIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEE-----------------------------EEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred EEEEeCCCCCccEEEEEecccceE-----------------------------EEeeccccccCCCccEEEEEeCCCeEE
Confidence 9999999877 666666 777788 77 4688999999999999999
Q ss_pred EEECCCCc-eEEEeecCCC----CeEEEE----EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEcc-
Q 011924 331 LVDSMTGK-TIASLCGHLD----FSFASA----WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS- 400 (475)
Q Consensus 331 iwd~~~~~-~~~~l~~h~~----~v~~~~----~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp- 400 (475)
+||+++++ ++..+..|.+ .+.+++ |+|++++|++++.|+.|++||++. .+. .....+...|.+++|+|
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRK 220 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCC
Confidence 99999887 7788876655 788888 788999999999999999999986 444 44466788999999999
Q ss_pred --CCCEEEEEcCCCeEEEEECCCCeeEEEEe-----ccCCCeEEEEEcCCCC-eEEEEEecCCcc
Q 011924 401 --DGRYMATAEPADFVHVYDVKSGYEKEQEI-----DFFGEISGISFSPDTE-SLFIGVWDRTYG 457 (475)
Q Consensus 401 --dg~~la~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~fspdg~-~l~~~~~D~~~~ 457 (475)
++++|++++.|+.|++||++++.....+. .|.+.|.+++|+|+++ +|++|+.|+.+.
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH 285 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEE
Confidence 99999999999999999998876554444 8999999999999998 899999998764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=227.24 Aligned_cols=270 Identities=19% Similarity=0.234 Sum_probs=203.9
Q ss_pred eecccceeE-EecCC-CeEEEe-cCCeEEEEecCCCCce---EEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc
Q 011924 129 LHFQLRNLV-WATSK-HDVYLM-SHFSVIHWSSLTSSRS---QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK 200 (475)
Q Consensus 129 ~h~~lr~l~-~~~~~-~~v~~~-~~~~v~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~ 200 (475)
.|....+.+ |.+.. ..|+.. .|+.|++|+..+.... ....+.+ +...|.+++| +++
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~----------------h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG----------------HSHFVSDVVISSDGQ 99 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC----------------CSSCEEEEEECTTSS
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC----------------CCCCEEEEEECCCCC
Confidence 465544444 66653 455554 5799999997665432 1112222 2347999999 899
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccc-
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPW- 277 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~- 277 (475)
+|++|+.||.|++|+....... .....+...+..+.+ ++.+.. +++++.|+.+++||+.......... +..
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTT---RRFVGHTKDVLSVAF--SSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEE---EEEECCSSCEEEEEE--CTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred EEEEEcccccceEEeeccccee---eeecCCCCceeEEEE--eecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 9999999999999998865544 344456666777777 899886 8999999999999997654433221 333
Q ss_pred --cEEeccCCc--eEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 278 --PVNVSSSYC--IIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 278 --~v~~s~~~~--~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
.+.|++.+. .++ .+++||..+++...... .|.+++|+|++++|++++.|+.|++||+++++++..+
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 334555432 222 58999999988876654 6889999999999999999999999999999999888
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE---------ecCCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL---------KGNLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
.+ ...+.+++|+|++.+ ++++.|++|++||++. ...+..+ .+|...|++++|+|+|++|++|+.||.|
T Consensus 254 ~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 254 DG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEG-KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV 330 (340)
T ss_dssp EC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTT-TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred cC-CceEEeeecCCCCce-eeccCCCEEEEEECCC-CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 85 467999999998765 5566799999999976 5544444 3577899999999999999999999999
Q ss_pred EEEECCCCe
Q 011924 415 HVYDVKSGY 423 (475)
Q Consensus 415 ~iwd~~~~~ 423 (475)
+|||+++|+
T Consensus 331 ~iW~~~tGt 339 (340)
T 4aow_A 331 RVWQVTIGT 339 (340)
T ss_dssp EEEEEEC--
T ss_pred EEEeCCCcC
Confidence 999999985
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-28 Score=234.62 Aligned_cols=200 Identities=14% Similarity=0.126 Sum_probs=172.7
Q ss_pred EeeecCCCCceeEEEEEe---CC-CCCeEEEEEeCCCeEEEEECCCC-------eeeeeee-ccccEEeccCCceEEEEE
Q 011924 225 SRTTYDDNAITNAVEIYG---SP-SGAVHFTASNNDCGVRDFDMGKY-------QLSKHFR-FPWPVNVSSSYCIILLCR 292 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~---s~-~g~~~l~s~s~dg~v~iwd~~~~-------~~~~~~~-~~~~v~~s~~~~~l~~~~ 292 (475)
...+.+|...|++++|.+ ++ +++ +|++|+.|++|++||+... .....+. |...|.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~------------ 80 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS------------ 80 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE------------
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE------------
Confidence 456778999999998843 23 666 4999999999999999753 2334444 677888
Q ss_pred EeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 372 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~ 372 (475)
+++|+|++.++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 81 -----------------~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 81 -----------------DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143 (343)
T ss_dssp -----------------EEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred -----------------EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEEe---cCCCceEEEEEccCC----------CEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEE
Q 011924 373 IWDLRNLSESVAVLK---GNLGAIRSIRYTSDG----------RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGIS 439 (475)
Q Consensus 373 iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg----------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 439 (475)
+||+.. ....... +|...|.+++|+|++ .+|++++.|+.|++|| .++.....+..|.+.|.+++
T Consensus 144 ~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 144 LWNILG--ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLS 220 (343)
T ss_dssp EEESSS--CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEE
T ss_pred EEeccC--CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEE
Confidence 999963 3333333 677899999999987 7999999999999999 45667778889999999999
Q ss_pred EcCCCCeEEEEEecCCcc
Q 011924 440 FSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 440 fspdg~~l~~~~~D~~~~ 457 (475)
|+|+|++|++|+.|+++.
T Consensus 221 ~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 221 ISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp ECTTSSEEEEEETTCEEE
T ss_pred ECCCCCEEEEEcCCCeEE
Confidence 999999999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=242.50 Aligned_cols=222 Identities=7% Similarity=0.028 Sum_probs=174.8
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC---------Ce
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---------YQ 268 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~---------~~ 268 (475)
++.+|++|+.||.|++|++.......... ...|.++.+ +|. +++++.|++|++|+... ++
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~--~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGE--HPA----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCC--CCS----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeee--CCc----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 78899999999999999998776553222 344666666 676 88999999999997753 33
Q ss_pred eeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 269 LSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 269 ~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
.+..+. +..+|. +++|+| +++++++++.|+.|++||+++++.+..+.
T Consensus 116 ~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 166 (343)
T 3lrv_A 116 VLREIEVDSANEII-----------------------------YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS 166 (343)
T ss_dssp EEEEEECCCSSCEE-----------------------------EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred eeEEeecCCCCCEE-----------------------------EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 333332 334566 999999 99999999999999999999999877664
Q ss_pred c-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceE-EEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 345 G-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV-AVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 345 ~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~-~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
. |...+.+++|+|++.+|++|+.|++|+|||+++ ++.+ ..+.. |.++|++++|+|+|++|++++ ++.|+|||+++
T Consensus 167 ~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 4 556899999999999999999999999999988 4544 77887 999999999999999999999 55999999998
Q ss_pred CeeEEEEec---cCCCeE--EEEEcCCCCeEEEEEe-cCCcceEEEE
Q 011924 422 GYEKEQEID---FFGEIS--GISFSPDTESLFIGVW-DRTYGSLLEY 462 (475)
Q Consensus 422 ~~~~~~~~~---~~~~i~--~l~fspdg~~l~~~~~-D~~~~~ll~~ 462 (475)
+..+..+.. |...+. +++|+|+|++|++++. |+.+ .+..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i-~v~~~ 290 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL-TIYKF 290 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE-EEEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE-EEEEE
Confidence 866544333 333343 6999999999999988 7654 34433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=238.94 Aligned_cols=222 Identities=15% Similarity=0.220 Sum_probs=198.7
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..|.++++++++|++|+.+|.|++|++.+.... ..+.+|.+.|.++++ +++ ++++|+.||+|++||+.+++.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~----~~~-~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECK---RILTGHTGSVLCLQY----DER-VIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEE---EEECCCSSCEEEEEC----CSS-EEEEEETTSCEEEEESSSCCE
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEE---EEEcCCCCcEEEEEE----CCC-EEEEEcCCCeEEEEECCCCcE
Confidence 479999999999999999999999999875544 566789999999877 555 499999999999999999998
Q ss_pred eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE---EEeec
Q 011924 270 SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI---ASLCG 345 (475)
Q Consensus 270 ~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~l~~ 345 (475)
+..+. +...+. +++|++ ..+++++.|+.|++||+.++..+ ..+.+
T Consensus 206 ~~~~~~h~~~v~-----------------------------~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 206 LNTLIHHCEAVL-----------------------------HLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp EEEECCCCSCEE-----------------------------EEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred EEEEcCCCCcEE-----------------------------EEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence 88877 777888 888874 59999999999999999987755 67789
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
|...|.+++| ++++|++|+.|++|++||+++ ++++..+.+|...|.+++|+ +++|++|+.|+.|++||+.++..+
T Consensus 255 ~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEE
Confidence 9999999999 788999999999999999987 78899999999999999984 679999999999999999999999
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
..+..|.+.|.+++| ++.+|++|+.|+.+.
T Consensus 330 ~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 330 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 359 (435)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEE
Confidence 999999999999999 788999999998874
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=260.89 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=189.9
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
..|++++| ++++||+|+.||.|++|+...... .....|...|.+++| +| |+ +|++++.|++|++||+.++
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~----~~~~~~~~~V~~l~f--sp-g~-~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV----VIKLEDRSAIKEMRF--VK-GI-YLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE----EEECSSCCCEEEEEE--ET-TT-EEEEEETTCEEEEEETTTC
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE----EEEcCCCCCEEEEEE--cC-CC-EEEEEECcCeEEEEECCCC
Confidence 47999999 899999999999999999865332 223457788999999 88 77 5999999999999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE-------
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI------- 340 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~------- 340 (475)
+++..+.+...|. +++|+|++++|++|+.||.|++||+++++..
T Consensus 90 ~~~~~~~~~~~V~-----------------------------~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 90 KVLTTVFVPGKIT-----------------------------SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp SEEEEEECSSCEE-----------------------------EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred cEEEEEcCCCCEE-----------------------------EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 9888888888888 9999999999999999999999999988753
Q ss_pred ----EEeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCCceEEEEecC------------------CCceEEEE
Q 011924 341 ----ASLCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLKGN------------------LGAIRSIR 397 (475)
Q Consensus 341 ----~~l~~h~~~v~~~~~sp~-g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~------------------~~~v~~l~ 397 (475)
..+.+|.+.|.+++|+|+ +..|++|+.|++| +||++. ++++..+..| ...|++++
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 234679999999999995 5799999999999 999987 7778777765 46799999
Q ss_pred EccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-----c-------------cCCCeEEEEEc----CCC-CeEEEEEecC
Q 011924 398 YTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-----D-------------FFGEISGISFS----PDT-ESLFIGVWDR 454 (475)
Q Consensus 398 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-----~-------------~~~~i~~l~fs----pdg-~~l~~~~~D~ 454 (475)
|+|+|++||+|+.|+.|+|||+++++++.... . |.+.|.+++|+ |++ ..|++|+.|.
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 99999999999999999999999987765311 1 24479999995 444 4566776764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=226.35 Aligned_cols=259 Identities=15% Similarity=0.150 Sum_probs=198.7
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCce--EEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEE
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRS--QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAG 205 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg 205 (475)
...+.|.++...|+.. .++.|.+|+..++... .+..+.+ +...|.+++| ++++|++|
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA----------------HDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC----------------CSSCEEEEEECCGGGCSEEEEE
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc----------------CCCcEEEEEEcCCCCCCEEEEE
Confidence 3445577777767665 4689999998765432 2212221 3347999999 28999999
Q ss_pred ecCceEEEEeCCCCCc------eEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEECCCCeeeeeeeccc
Q 011924 206 GFQGELICKHLDRPGV------SFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
+.||.|++|++..... .........|...|.+++| +|+ +.. +++++.|+.|++||+.+++.+..+....
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF--APAHLGLK-LACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE--cCCCCCcE-EEEecCCCcEEEecCCChHHhccccccc
Confidence 9999999999986532 1234566788999999999 998 875 8999999999999998877655443211
Q ss_pred cEE---eccCCceEEEEEEeecccceEEEEeeeeeeEEECCC---CcEEEEEeCCCcEEEEECCCCce--EEEeecCCCC
Q 011924 278 PVN---VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD---GKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDF 349 (475)
Q Consensus 278 ~v~---~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~---g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~h~~~ 349 (475)
.+. +.+. .....+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...
T Consensus 155 ~~~~~~~~~~------------------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 155 EMKVLSIPPA------------------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEESCSCCCS------------------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred cccccccccC------------------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 111 0000 00112339999997 99999999999998888887765 6778899999
Q ss_pred eEEEEEecCC----CEEEEEeCCCeEEEEECCCC---------------------------------------------C
Q 011924 350 SFASAWHPNG----VTFATGNQDKTCRIWDLRNL---------------------------------------------S 380 (475)
Q Consensus 350 v~~~~~sp~g----~~l~t~s~dg~v~iwd~~~~---------------------------------------------~ 380 (475)
|.+++|+|++ ++|++++.||+|++||++.. .
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV 296 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence 9999999998 89999999999999999752 1
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
+++..+.+|...|++++|+|+|++|++++.||.|+||++.++.....+
T Consensus 297 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 567778889999999999999999999999999999999987655443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=232.97 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=192.3
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--c--CcEEEEEec
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--K--DKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~--~~~lvsg~~ 207 (475)
+..+.|.++...|++. .++.|.+|+........+..+.+ +..+|.+++| + +++|++|+.
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG----------------HEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC----------------CSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC----------------CCCcEEEEEeCCCCCCCEEEEecc
Confidence 3455577777777776 47899999986544444333332 2347999999 3 899999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCC--CCeEEEEEeCCCeEEEEECCCCeeee--ee-eccccEEec
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQLSK--HF-RFPWPVNVS 282 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd~~~~~~~~--~~-~~~~~v~~s 282 (475)
||.|++|++...... .......|...|.+++| +|+ +.. +++++.|+.|++||+....... .+ .+...+.
T Consensus 78 dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~--~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-- 151 (379)
T 3jrp_A 78 DGKVLIWKEENGRWS-QIAVHAVHSASVNSVQW--APHEYGPL-LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-- 151 (379)
T ss_dssp TSCEEEEEEETTEEE-EEEEECCCSSCEEEEEE--CCGGGCSE-EEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE--
T ss_pred CCEEEEEEcCCCcee-EeeeecCCCcceEEEEe--CCCCCCCE-EEEecCCCcEEEEecCCCCceeeEEecCCCCceE--
Confidence 999999999875422 24556678899999999 998 775 9999999999999998764322 22 3677888
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECC-------------CCcEEEEEeCCCcEEEEECCCCc----eEEEeec
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-------------DGKLLIIVGDNPDGLLVDSMTGK----TIASLCG 345 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-------------~g~~l~~~~~dg~i~iwd~~~~~----~~~~l~~ 345 (475)
+++|+| ++.+|++++.|+.|++||+++++ .+..+.+
T Consensus 152 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 152 ---------------------------SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp ---------------------------EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred ---------------------------EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 999999 69999999999999999998765 4567788
Q ss_pred CCCCeEEEEEecC---CCEEEEEeCCCeEEEEECCCCCc--eEEEE--ecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 346 HLDFSFASAWHPN---GVTFATGNQDKTCRIWDLRNLSE--SVAVL--KGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 346 h~~~v~~~~~sp~---g~~l~t~s~dg~v~iwd~~~~~~--~~~~~--~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
|...|.+++|+|+ +++|++++.||+|++||++.... ....+ ..+...|++++|+|+|++|++++.||.|+||+
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 9999999999999 89999999999999999986422 12222 23778999999999999999999999999999
Q ss_pred CCC
Q 011924 419 VKS 421 (475)
Q Consensus 419 ~~~ 421 (475)
+..
T Consensus 285 ~~~ 287 (379)
T 3jrp_A 285 ENL 287 (379)
T ss_dssp EEE
T ss_pred CCC
Confidence 874
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=230.10 Aligned_cols=273 Identities=13% Similarity=0.036 Sum_probs=216.3
Q ss_pred ccceeEEecCCCeEEEec--CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec
Q 011924 132 QLRNLVWATSKHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF 207 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~ 207 (475)
....+.|.+ ...+++.. ++.|.+|+..+++....+... ....+...|.++++ ++.++++++.
T Consensus 124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE-------------KYKKKLGFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------HHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------cccccCCceeEEEEcCCCEEEEEECC
Confidence 344566776 55555543 467999998877655432211 00112347889999 7889999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
+|.|++|++...... .....|...+.+++| +|+++.++++++.++.|++||+.+++.+..+.....+.
T Consensus 190 d~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------- 257 (433)
T 3bws_A 190 ANAVHVFDLKTLAYK---ATVDLTGKWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR------- 257 (433)
T ss_dssp GTEEEEEETTTCCEE---EEEECSSSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE-------
T ss_pred CCEEEEEECCCceEE---EEEcCCCCCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce-------
Confidence 999999999865544 344467788999999 99999866777789999999999998888877666677
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--------CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCC
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG 359 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--------~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g 359 (475)
+++|+|+|+.+++++ .++.|++||+++++.+..+. |...+.+++|+|++
T Consensus 258 ----------------------~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g 314 (433)
T 3bws_A 258 ----------------------GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE 314 (433)
T ss_dssp ----------------------EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST
T ss_pred ----------------------EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC
Confidence 999999999999887 48899999999998777664 66689999999999
Q ss_pred CEE-EEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC---------------CCeEEEEECCCCe
Q 011924 360 VTF-ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---------------ADFVHVYDVKSGY 423 (475)
Q Consensus 360 ~~l-~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---------------dg~i~iwd~~~~~ 423 (475)
+.+ ++++.+++|++||+.+ ++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+++
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKE-KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp TEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CEEEEEecCCCEEEEEECCC-CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 754 6668899999999976 67776665 5667999999999999988876 4699999999998
Q ss_pred eEEEEeccCCCeEEEEEcCCCCeEEEEEe-cCCc
Q 011924 424 EKEQEIDFFGEISGISFSPDTESLFIGVW-DRTY 456 (475)
Q Consensus 424 ~~~~~~~~~~~i~~l~fspdg~~l~~~~~-D~~~ 456 (475)
.+..+.. ...+.+++|+|+|++|++++. |+++
T Consensus 393 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 393 VKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred EEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence 8777665 567999999999999998886 7654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=230.76 Aligned_cols=194 Identities=10% Similarity=0.109 Sum_probs=158.1
Q ss_pred eEEEEEE--cCcEEEEE--ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 191 QVSTLAV--KDKLLVAG--GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.+.+++| +|++|+++ +.|+.|++||+.+..... .+ .|.+.|.+++| +|+|+. +++++ ++.+++|+..+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~---~~-~~~~~V~~v~f--spdg~~-l~s~s-~~~~~~~~~~~ 206 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF---EI-ETRGEVKDLHF--STDGKV-VAYIT-GSSLEVISTVT 206 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE---EE-ECSSCCCEEEE--CTTSSE-EEEEC-SSCEEEEETTT
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE---Ee-CCCCceEEEEE--ccCCce-EEecc-ceeEEEEEecc
Confidence 3556666 89987654 478999999998755442 22 36678999999 999986 77876 45577777766
Q ss_pred Ceeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC----cEEEEECCCCce
Q 011924 267 YQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP----DGLLVDSMTGKT 339 (475)
Q Consensus 267 ~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg----~i~iwd~~~~~~ 339 (475)
++.+.... +...+. +++|+|+++++++++.++ .+++|++..+..
T Consensus 207 ~~~~~~~~~~~~~~~v~-----------------------------~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLS-----------------------------KINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp CCEEEEECCCCTTEEEE-----------------------------EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred CcceeeeecCCCCCCEE-----------------------------EEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 66543322 566777 999999999999998776 588899876643
Q ss_pred ----EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 340 ----IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 340 ----~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
...+.+|...|.+++|+|+|++||+|+.|++|+|||+++ ++++..+ .+|..+|++++|+|||++||+|+.|++|
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tv 336 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTI 336 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeE
Confidence 356778999999999999999999999999999999987 7777765 7899999999999999999999999999
Q ss_pred EEEECCCC
Q 011924 415 HVYDVKSG 422 (475)
Q Consensus 415 ~iwd~~~~ 422 (475)
+||++...
T Consensus 337 rvw~ip~~ 344 (365)
T 4h5i_A 337 HIIKLPLN 344 (365)
T ss_dssp EEEECCTT
T ss_pred EEEEcCCC
Confidence 99999754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=240.93 Aligned_cols=224 Identities=10% Similarity=0.061 Sum_probs=179.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCc-------eEEE--------------------eeecCCCCceeEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-------SFCS--------------------RTTYDDNAITNAVEIY 241 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-------~~~~--------------------~~~~~~~~~v~~l~~~ 241 (475)
.|.+++| +|+++|+++.|++|+ +...... .+.. .....|...|.+++|
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw- 93 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP- 93 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE-
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE-
Confidence 5778888 999999999999995 3221110 0000 111244678999999
Q ss_pred eCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc-----cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC
Q 011924 242 GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW-----PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD 316 (475)
Q Consensus 242 ~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~ 316 (475)
||+|.. |++++.||.|++|+... ++..+.+.. .+. +++|||+
T Consensus 94 -SPdG~~-LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~-----------------------------svafSPD 140 (588)
T 2j04_A 94 -SPIDDW-MAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYH-----------------------------CFEWNPI 140 (588)
T ss_dssp -CSSSSC-EEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEE-----------------------------EEEECSS
T ss_pred -CCCCCE-EEEEeCCCcEEEEeCCc--eeeeccCCCccccccEE-----------------------------EEEEcCC
Confidence 999997 99999999999999644 444444333 477 9999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCc-------eEEEe----ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eE
Q 011924 317 GKLLIIVGDNPDGLLVDSMTGK-------TIASL----CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SV 383 (475)
Q Consensus 317 g~~l~~~~~dg~i~iwd~~~~~-------~~~~l----~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~ 383 (475)
|++||+|+.||+|+|||+.+++ .+.++ .+|...|.+++|+|+| +++++.|++|++||+..... ..
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~ 218 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS 218 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence 9999999999999999999886 36776 6788899999999999 88889999999999976331 34
Q ss_pred EEEe-cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE--cCCCCeEEEEEecCC
Q 011924 384 AVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF--SPDTESLFIGVWDRT 455 (475)
Q Consensus 384 ~~~~-~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f--spdg~~l~~~~~D~~ 455 (475)
+++. +|...|.+++|+ |+.||+++ ++.|++||+.++.......+|.+.|.+++| +|++..|+++..||+
T Consensus 219 ~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 219 RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 5664 788899999999 68999998 699999999988764455489999999999 999999999999987
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=249.65 Aligned_cols=199 Identities=16% Similarity=0.202 Sum_probs=176.9
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC-----eeeeeee-ccccEEeccCCceEEEEEEeecccc
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-----QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTE 299 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~ 299 (475)
..+.+|...|++|++ +|++..+|++|+.|++|++|++.+. .....+. |...|.
T Consensus 376 ~~l~~H~~~V~~v~~--~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~------------------- 434 (694)
T 3dm0_A 376 GTMRAHTDMVTAIAT--PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE------------------- 434 (694)
T ss_dssp EEEECCSSCEEEEEC--CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-------------------
T ss_pred hhcccCCceeEEEEe--cCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-------------------
Confidence 456789999999999 8887667999999999999999753 2334444 788888
Q ss_pred eEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 011924 300 KVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 300 ~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~ 379 (475)
+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..
T Consensus 435 ----------~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~- 503 (694)
T 3dm0_A 435 ----------DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG- 503 (694)
T ss_dssp ----------EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-
T ss_pred ----------EEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CceEEEE----ecCCCceEEEEEccCC--CEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 380 SESVAVL----KGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 380 ~~~~~~~----~~~~~~v~~l~~spdg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.....+ .+|...|.+++|+|++ ..|++++.|+.|+|||+.++.....+..|.+.|.+++|+|+|++|++|+.|
T Consensus 504 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 504 -ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp -CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 333333 3577889999999987 689999999999999999999888999999999999999999999999999
Q ss_pred CCcc
Q 011924 454 RTYG 457 (475)
Q Consensus 454 ~~~~ 457 (475)
+++.
T Consensus 583 g~i~ 586 (694)
T 3dm0_A 583 GVVL 586 (694)
T ss_dssp SBCE
T ss_pred CeEE
Confidence 8874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=220.71 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=168.9
Q ss_pred eEEEecCCeEEEEecCCC---CceEEEeccC-CCCCCCCCCC---C---ccccccceeEEEEEE--c----CcEEEEEec
Q 011924 144 DVYLMSHFSVIHWSSLTS---SRSQVLNVSG-HVAPSEKHPG---S---LLEGFTQTQVSTLAV--K----DKLLVAGGF 207 (475)
Q Consensus 144 ~v~~~~~~~v~~w~~~~~---~~~~~~~~~~-~~~~~~~~~~---~---~~~~~~~~~v~~l~~--~----~~~lvsg~~ 207 (475)
-|.+++...|.+|.+... +....+.+.. ++......|. . -+..+....|.+|++ + ++++++++.
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 467788999999999987 3444444433 1111111111 0 123444456667766 5 566666553
Q ss_pred --------------------CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC---CCCeEEEEEeCCCeEEEEEC
Q 011924 208 --------------------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP---SGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 208 --------------------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~---~g~~~l~s~s~dg~v~iwd~ 264 (475)
++.|++|++...+.. ......|...+..++| ++ ++. +|++++.|++|+|||+
T Consensus 136 ~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~s~~~~~~~v~~l~f--s~~~g~~~-~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 136 IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--KENQFLMPPEETILTF--AEVQGMQE-ALLGTTIMNNIVIWNL 210 (356)
T ss_dssp EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--EEEEEECCCSSCEEEE--EEEETSTT-EEEEEETTSEEEEEET
T ss_pred eEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--eeeeccCCCceeeEEe--eccCCCCc-eEEEecCCCcEEEEEC
Confidence 777777777543332 2333456666777777 55 445 4999999999999999
Q ss_pred CCCeeeeeee-c---cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE------------EEEeCCCc
Q 011924 265 GKYQLSKHFR-F---PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL------------IIVGDNPD 328 (475)
Q Consensus 265 ~~~~~~~~~~-~---~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l------------~~~~~dg~ 328 (475)
.++++++++. + ...+. +++|+|+|.++ ++|+.|++
T Consensus 211 ~TGk~l~tL~g~~~~v~~v~-----------------------------~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 211 KTGQLLKKMHIDDSYQASVC-----------------------------HKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp TTCCEEEEEECCC---CCCE-----------------------------EEEEEETTEEEEEEC------------CCEE
T ss_pred CCCcEEEEEcCCCcceeeeE-----------------------------EEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 9999999886 2 23444 67888888776 56778999
Q ss_pred EEEEECCCCceEEEe-----ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE-EEEEccCC
Q 011924 329 GLLVDSMTGKTIASL-----CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDG 402 (475)
Q Consensus 329 i~iwd~~~~~~~~~l-----~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~l~~spdg 402 (475)
|++||..+++.+..+ .+|...+.+..+ ++.++|+++.|++|+|||+.+ ++++.++.+|...+. .++|+|||
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSS
T ss_pred EEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCC
Confidence 999999999988766 367766554444 488999999999999999987 889999998877655 68999999
Q ss_pred CEEEEEcCCCeEEEEEC
Q 011924 403 RYMATAEPADFVHVYDV 419 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~ 419 (475)
++|++|+.|++|+|||+
T Consensus 339 ~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCcEEEecC
Confidence 99999999999999995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-26 Score=227.54 Aligned_cols=256 Identities=13% Similarity=0.101 Sum_probs=193.5
Q ss_pred ceeEEec-CCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecC
Q 011924 134 RNLVWAT-SKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQ 208 (475)
Q Consensus 134 r~l~~~~-~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~d 208 (475)
..+.|++ +...|++. .++.|.+|+..++.....+........... ....+...|.+++| ++.+|++|+.+
T Consensus 47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD-----HPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT-----CTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc-----ccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 4455777 66666664 578999999887665433321110000000 00124457999999 56799999999
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCC--eEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCC
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA--VHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSY 285 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~ 285 (475)
|.|++|++....... .. .+...+.++.+ +|.+. .++++++.++.|++||+.+++.+..+. +..++.
T Consensus 122 ~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~----- 190 (408)
T 4a11_B 122 KTLKVWDTNTLQTAD---VF-NFEETVYSHHM--SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL----- 190 (408)
T ss_dssp SEEEEEETTTTEEEE---EE-ECSSCEEEEEE--CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE-----
T ss_pred CeEEEeeCCCCccce---ec-cCCCceeeeEe--ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE-----
Confidence 999999998755442 22 25667888888 66432 259999999999999999988888777 788898
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCc-eEEEe---------------ecCCC
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGK-TIASL---------------CGHLD 348 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~-~~~~l---------------~~h~~ 348 (475)
+++|+|+++ +|++++.+|.|++||++++. ++..+ .+|..
T Consensus 191 ------------------------~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 191 ------------------------AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp ------------------------EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred ------------------------EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 999999998 68999999999999998765 44444 56889
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCC----------------------------------------------Cce
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNL----------------------------------------------SES 382 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~----------------------------------------------~~~ 382 (475)
.|.+++|+|++++|++++.|+.|++||+++. +++
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999999999999999999999998752 245
Q ss_pred EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 383 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
+..+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+....
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 66777899999999999999999999999999999999987665443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=228.48 Aligned_cols=253 Identities=15% Similarity=0.208 Sum_probs=196.2
Q ss_pred ceeEEecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEE
Q 011924 134 RNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELI 212 (475)
Q Consensus 134 r~l~~~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~ 212 (475)
..+.|+++...|+. ..++.|.+|+..+++.... ..+ +...|.++++++.+|++|+.++.++
T Consensus 151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~--~~~----------------h~~~v~~~s~~~~~l~sgs~d~~i~ 212 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTS----------------HSARVGSLSWNSYILSSGSRSGHIH 212 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECC----------------CSSCEEEEEEETTEEEEEETTSEEE
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE--EeC----------------CCCceEEEeeCCCEEEEEeCCCcee
Confidence 44558887777776 4578999999887755433 222 2346889999999999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee----eeee-eccccEEeccCCce
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL----SKHF-RFPWPVNVSSSYCI 287 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~----~~~~-~~~~~v~~s~~~~~ 287 (475)
+|+....... ...+..|...+..+.+ +|++.. +++++.|+.|++|++.+++. +... .+...|.
T Consensus 213 ~~d~~~~~~~--~~~~~~h~~~~~~~~~--~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~------- 280 (420)
T 4gga_A 213 HHDVRVAEHH--VATLSGHSQEVCGLRW--APDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK------- 280 (420)
T ss_dssp EEETTSSSCE--EEEEECCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE-------
T ss_pred Eeeeccccee--eEEecccccceeeeee--cCCCCe-eeeeeccccceEEeeccccccceeeeeecccCCcee-------
Confidence 9998766544 3566788999999999 999986 99999999999999977543 2222 3677788
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEE--eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIV--GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~--~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
+++|+|.+ .+++++ +.|+.|++||+.+++++..+..| ..+.++.|+|+++.+++
T Consensus 281 ----------------------~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 281 ----------------------AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS 337 (420)
T ss_dssp ----------------------EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred ----------------------eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEE
Confidence 99999954 555554 47899999999999999888855 56889999999999988
Q ss_pred Ee--CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 365 GN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 365 ~s--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
++ .|++|+|||+.+ ++++..+.+|.+.|++++|+|+|++||+|+.|++|+|||+....+......+...+....|
T Consensus 338 ~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEecCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 76 689999999987 7899999999999999999999999999999999999999876555544444444433333
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-25 Score=221.28 Aligned_cols=250 Identities=13% Similarity=0.142 Sum_probs=200.1
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
.++.|.+|+..+++....+... ..+.++++ ++++| ++++.+|.|++|++.+.+..
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--- 67 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVG-------------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--- 67 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-------------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE---
T ss_pred CCCEEEEEECCCCeEEEEeecC-------------------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE---
Confidence 4588999998877655443211 23678888 77766 67779999999999765543
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
.....+ ..+.+++| +|+++.++++++.++.|++||+.+++.+..+.....+.
T Consensus 68 ~~~~~~-~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~------------------------- 119 (391)
T 1l0q_A 68 ATVPAG-SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL------------------------- 119 (391)
T ss_dssp EEEECS-SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-------------------------
T ss_pred EEEECC-CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc-------------------------
Confidence 222223 37889999 99999866777788999999999999988888777777
Q ss_pred eeeeeEEECCCCcEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCCceE
Q 011924 306 LCLQHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRNLSESV 383 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-~t~s~dg~v~iwd~~~~~~~~ 383 (475)
+++|+|+|+.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.+++|++||+++ ++.+
T Consensus 120 ----~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~ 193 (391)
T 1l0q_A 120 ----GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVI 193 (391)
T ss_dssp ----EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred ----eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEE
Confidence 99999999977 67778999999999999998888865 457999999999887 5777899999999976 6666
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE-EecCCc
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-VWDRTY 456 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~-~~D~~~ 456 (475)
..+.. ...+.+++|+|+|++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+|++|+++ +.|+.+
T Consensus 194 ~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v 268 (391)
T 1l0q_A 194 DTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTV 268 (391)
T ss_dssp EEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEE
Confidence 66654 55789999999999999887 6899999999999887777654 458999999999988654 445443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=215.96 Aligned_cols=248 Identities=12% Similarity=-0.029 Sum_probs=174.1
Q ss_pred eEEEEEE----cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC-------------------------ceeEEEEE
Q 011924 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-------------------------ITNAVEIY 241 (475)
Q Consensus 191 ~v~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------------------------~v~~l~~~ 241 (475)
.++++-| -....+.......|++|+......-.+..+...|.. .|++|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~- 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC- 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE-
Confidence 4666766 123344445578999999887632222233333332 4566666
Q ss_pred eCCC----CCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeeccc-ceEEEEee----eeee
Q 011924 242 GSPS----GAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMT-EKVIICLL----CLQH 310 (475)
Q Consensus 242 ~s~~----g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~-~~~~~~~~----~i~~ 310 (475)
+|+ +.. +++++. .+++|++.+++.+.... +...|. +|++.. ++.+.... .++.
T Consensus 120 -spd~~~~~~~-l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~------------~~~~s~dG~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 120 -SSDDESEKQV-LLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVE------------VMTFAEDGGGKENQFLMPPEETI 183 (356)
T ss_dssp -------CCEE-EEEEEE--EEEEEEETTTEEEEEESSSTTCEEE------------EEEECTTSCEEEEEEECCCSSCE
T ss_pred -CCCccccccE-EEeCCC--eEEEEecCCCcEEEecccCCCCcEE------------EEEECCCCceeeeeccCCCceee
Confidence 888 765 666653 47889888888777643 454444 555522 44333211 4557
Q ss_pred EEECC---CCcEEEEEeCCCcEEEEECCCCceEEEeecCC---CCeEEEEEecCCCEE------------EEEeCCCeEE
Q 011924 311 SSQSP---DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL---DFSFASAWHPNGVTF------------ATGNQDKTCR 372 (475)
Q Consensus 311 ~~~sp---~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~---~~v~~~~~sp~g~~l------------~t~s~dg~v~ 372 (475)
++|+| ++.+|++++.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|+
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 88888 77999999999999999999999999998754 357778999999887 5688899999
Q ss_pred EEECCCCCceEEEE-----ecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE-EEEEcCCCCe
Q 011924 373 IWDLRNLSESVAVL-----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS-GISFSPDTES 446 (475)
Q Consensus 373 iwd~~~~~~~~~~~-----~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~fspdg~~ 446 (475)
+||..+ ++.+..+ .+|.+.+.+..+ ++.++|+++.|++|+|||+.+++++.++.+|...+. .++|||||++
T Consensus 264 lWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 264 VINPKT-TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp EEETTT-TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred EEECCC-CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 999976 6766655 255555444444 488999999999999999999999999988877654 6899999999
Q ss_pred EEEEEecCCcce
Q 011924 447 LFIGVWDRTYGS 458 (475)
Q Consensus 447 l~~~~~D~~~~~ 458 (475)
|++|+.|++++.
T Consensus 341 LaSGS~D~TIkl 352 (356)
T 2w18_A 341 LLAGQKDGNIFV 352 (356)
T ss_dssp EEEECTTSCEEE
T ss_pred EEEEECCCcEEE
Confidence 999999999863
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=227.79 Aligned_cols=258 Identities=15% Similarity=0.161 Sum_probs=193.7
Q ss_pred ceeeeccc-ceeEEecC-CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCc
Q 011924 126 STILHFQL-RNLVWATS-KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDK 200 (475)
Q Consensus 126 ~~~~h~~l-r~l~~~~~-~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~ 200 (475)
..+.|... ..+.|.+. ...+++. .++.|.+|+..+...... ..+... + ...-..+...|++++| ++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~-----~-~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQ-----P-DLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCC-----C-SEEEECCSSCCCCEEECTTST
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCC-----C-cEEecCCCCCeEEEEeCCCCC
Confidence 34455543 44446665 3444443 468899999754211000 000000 0 0000123346889999 555
Q ss_pred -EEEEEecCceEEEEeCCCCCc---e-EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---eeeee
Q 011924 201 -LLVAGGFQGELICKHLDRPGV---S-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---QLSKH 272 (475)
Q Consensus 201 -~lvsg~~dg~i~vw~~~~~~~---~-~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~---~~~~~ 272 (475)
+|++|+.+|.|++|++..... . ........|...|.+++| +|++..+|++++.|+.|++||++++ +.+..
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 999999999999999987332 1 112345678899999999 9965556999999999999999876 45555
Q ss_pred ee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCC-CceEEEeecCCCC
Q 011924 273 FR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMT-GKTIASLCGHLDF 349 (475)
Q Consensus 273 ~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~ 349 (475)
+. +...++ +++|+|++. ++++++.+|.|++||+++ ++++..+.+|...
T Consensus 273 ~~~~~~~v~-----------------------------~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 273 VDAHTAEVN-----------------------------CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp EECCSSCEE-----------------------------EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred eecCCCCeE-----------------------------EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 54 778888 999999887 788999999999999997 5678899999999
Q ss_pred eEEEEEecCCC-EEEEEeCCCeEEEEECCCCC-------------ceEEEEecCCCceEEEEEccCCC-EEEEEcCCCeE
Q 011924 350 SFASAWHPNGV-TFATGNQDKTCRIWDLRNLS-------------ESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFV 414 (475)
Q Consensus 350 v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~~-------------~~~~~~~~~~~~v~~l~~spdg~-~la~~~~dg~i 414 (475)
|.+++|+|+++ +|++++.|++|+|||++..+ ..+..+.+|...|++++|+|+++ +|++++.||.|
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence 99999999884 79999999999999997522 56777788999999999999999 99999999999
Q ss_pred EEEECCCC
Q 011924 415 HVYDVKSG 422 (475)
Q Consensus 415 ~iwd~~~~ 422 (475)
+||++...
T Consensus 404 ~iw~~~~~ 411 (430)
T 2xyi_A 404 QVWQMAEN 411 (430)
T ss_dssp EEEEECHH
T ss_pred EEeEcccc
Confidence 99998754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=225.82 Aligned_cols=218 Identities=14% Similarity=0.044 Sum_probs=173.5
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC-----ceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-----ITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
...|.+++| +|.+|++++.+|.|++|+... +..... |.. .+.+++| ||+|+. |++|+.||+|++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svaf--SPDG~~-LAsgs~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEW--NPIESS-IVVGNEDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEE--CSSSSC-EEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEE--cCCCCE-EEEEcCCCEEEE
Confidence 567999999 999999999999999999543 233444 444 4999999 999997 999999999999
Q ss_pred EECCCCee-------eeeee-----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcE
Q 011924 262 FDMGKYQL-------SKHFR-----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDG 329 (475)
Q Consensus 262 wd~~~~~~-------~~~~~-----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i 329 (475)
|++.++.. +..+. |...|. +++|+|+| +++++.|+.+
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-----------------------------sVawSPdg--Laass~D~tV 204 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVT-----------------------------HIVWYEDV--LVAALSNNSV 204 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEE-----------------------------EEEEETTE--EEEEETTCCE
T ss_pred EECCCCccccccceeeeeeecccccccccEE-----------------------------EEEEcCCc--EEEEeCCCeE
Confidence 99988752 44442 345677 99999999 7888899999
Q ss_pred EEEECCCCce---EEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE--ccCCC
Q 011924 330 LLVDSMTGKT---IASL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSDGR 403 (475)
Q Consensus 330 ~iwd~~~~~~---~~~l-~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--spdg~ 403 (475)
++||+..++. .+++ .+|...|.+++|+ |+.||+++ +++|++||+.. ++......+|...|..++| +|++.
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~-~~~~~~~~gh~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN-YSISSLKTGSLENFHIIPLNHEKEST 280 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT-TEEEEEECSCCSCCCEEEETTCSSCE
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC-CeEEEEEcCCCceEEEEEeeeCCCCC
Confidence 9999987773 4567 4788999999999 68999997 69999999975 4543444489999999999 99999
Q ss_pred EEEEEcCCCeEEEEECCCCe-----------------------eEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 404 YMATAEPADFVHVYDVKSGY-----------------------EKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
.|+++..+|. ++|....-. .... ..+...|.+++|||||+.||+++.
T Consensus 281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNN-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSS-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceee-eccceEEEEEEECCCCCEEEEEEe
Confidence 9999999999 999874210 0000 011224889999999999998864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-26 Score=220.28 Aligned_cols=264 Identities=11% Similarity=0.035 Sum_probs=199.2
Q ss_pred ceeEEecCC---CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec
Q 011924 134 RNLVWATSK---HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF 207 (475)
Q Consensus 134 r~l~~~~~~---~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~ 207 (475)
..+.|.+.. ..|+.. .++.|.+|+..+........+.+ +...|.+++| ++++|++|+.
T Consensus 43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM----------------HTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE----------------CSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc----------------ccCCEEEEEECcCCCEEEEEcC
Confidence 444466663 555554 56899999987633322122211 2347999999 8899999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccE-EeccCCc
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV-NVSSSYC 286 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-~~s~~~~ 286 (475)
+|.|++|++...... ....|...|.+++|..+|++.. |++++.|+.|++||+.+++.+..+.....+ .+.....
T Consensus 107 dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181 (368)
T ss_dssp TSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCEE-EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred CCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCCE-EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence 999999999875533 2456889999999977888875 999999999999999998888877743322 2222222
Q ss_pred eEE------EEEEeecccceEEEEee------eeeeEEECCCCcE----EEEEeCCCcEEEEECCCC---ceEEEeecCC
Q 011924 287 IIL------LCRLLNFMTEKVIICLL------CLQHSSQSPDGKL----LIIVGDNPDGLLVDSMTG---KTIASLCGHL 347 (475)
Q Consensus 287 ~l~------~~~v~d~~~~~~~~~~~------~i~~~~~sp~g~~----l~~~~~dg~i~iwd~~~~---~~~~~l~~h~ 347 (475)
.+. .+.+|+........... .+.++++.+++.. +++++.++.|++|+++.. ..+..+.+|.
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 222 57899987754433222 2345555544433 999999999999999987 5677888887
Q ss_pred C------------CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 348 D------------FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 348 ~------------~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
. .|.+++|+|++++|++++.||.|++||+++ ++++..+.+|..+|++++|+|+|++|++++.|+..+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 6 799999999999999999999999999987 788999999999999999999999999999987554
Q ss_pred EEEC
Q 011924 416 VYDV 419 (475)
Q Consensus 416 iwd~ 419 (475)
.|++
T Consensus 341 ~~~~ 344 (368)
T 3mmy_A 341 GHEF 344 (368)
T ss_dssp CGGG
T ss_pred cccc
Confidence 4443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=205.18 Aligned_cols=235 Identities=14% Similarity=0.184 Sum_probs=189.8
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEE
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELI 212 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~ 212 (475)
..+.|.+....++.. .++.|.+|+..+++....+ .+ +...+.++++.+.+|++|+.++.++
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~--~~----------------h~~~~~~~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TS----------------HSARVGSLSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--EC----------------CSSCEEEEEEETTEEEEEETTSEEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe--cC----------------ccceEEEeecCCCEEEEEecCCceE
Confidence 445577777777664 5799999998877654432 22 2235778888999999999999999
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee-----eeeccccEEeccCCce
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK-----HFRFPWPVNVSSSYCI 287 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~-----~~~~~~~v~~s~~~~~ 287 (475)
+|+....... ......|...+..+.+ +++++. +++++.|++|++||+.+++... ...+...+.
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~------- 200 (318)
T 4ggc_A 133 HHDVRVAEHH--VATLSGHSQEVCGLRW--APDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK------- 200 (318)
T ss_dssp EEETTSSSCE--EEEEECCSSCEEEEEE--CTTSSE-EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEE-------
T ss_pred eeecCCCcee--EEEEcCccCceEEEEE--cCCCCE-EEEEecCcceeEEECCCCcccccceeeecccCCceE-------
Confidence 9998766544 3566788889999999 999986 8999999999999998765322 222556677
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEE---EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL---IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l---~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
+++++|.+..+ ++++.++.|++||.+.+....... +...+..++|+|+++.+++
T Consensus 201 ----------------------~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 201 ----------------------AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ----------------------EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred ----------------------EEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 88999965433 345678999999999888776655 6778999999999998887
Q ss_pred Ee--CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 365 GN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 365 ~s--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
++ .|++|+|||+++ ++++..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+.
T Consensus 258 ~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 65 799999999987 8899999999999999999999999999999999999998764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-23 Score=203.79 Aligned_cols=249 Identities=15% Similarity=0.089 Sum_probs=198.8
Q ss_pred eecccceeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEE-
Q 011924 129 LHFQLRNLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV- 203 (475)
Q Consensus 129 ~h~~lr~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lv- 203 (475)
.|...+.+.|+++...|++. .++.|.+|+..+++....+... ..+.++++ ++++|+
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-------------------~~v~~~~~spdg~~l~~ 90 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-------------------SSPQGVAVSPDGKQVYV 90 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-------------------SSEEEEEECTTSSEEEE
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-------------------CCccceEECCCCCEEEE
Confidence 34455667788888877665 5789999998887665544321 15788888 677775
Q ss_pred EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEecc
Q 011924 204 AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSS 283 (475)
Q Consensus 204 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~ 283 (475)
+++.++.|++|++...... .... +...+.+++| +|+|+.++++++.++.|++||+.+++.+..+.....+.
T Consensus 91 ~~~~~~~v~v~d~~~~~~~---~~~~-~~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--- 161 (391)
T 1l0q_A 91 TNMASSTLSVIDTTSNTVA---GTVK-TGKSPLGLAL--SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK--- 161 (391)
T ss_dssp EETTTTEEEEEETTTTEEE---EEEE-CSSSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE---
T ss_pred EECCCCEEEEEECCCCeEE---EEEe-CCCCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcc---
Confidence 5556799999999876543 2222 3345788888 99999866888899999999999999888887666677
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 362 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 362 (475)
+++|+|+++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|
T Consensus 162 --------------------------~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 162 --------------------------GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKA 214 (391)
T ss_dssp --------------------------EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEE
T ss_pred --------------------------eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEE
Confidence 99999999887 566788999999999998887776 56688999999999999
Q ss_pred EEEe---CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE-EEEcCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 363 ATGN---QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 363 ~t~s---~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
++++ .++.|++||+++ ++.+..+..+. .+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+..+
T Consensus 215 ~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGT-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EEEEECSSCCEEEEEETTT-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EEEecCcCCCcEEEEECCC-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 9888 689999999976 67777887765 57899999999977 56688999999999999888877765543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=211.58 Aligned_cols=219 Identities=9% Similarity=0.023 Sum_probs=171.6
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEE-------EEEEeecc
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIIL-------LCRLLNFM 297 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~-------~~~v~d~~ 297 (475)
....|...|++++| +|+|+. |++|+.+ .+++|++.+++...... ....+.+.+....++ .+++||..
T Consensus 14 ~~~~h~~~V~~v~f--s~dg~~-la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 14 PENHVSNPVTDYEF--NQDQSC-LILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp -----CCCCCEEEE--CTTSSE-EEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred ccccCCCceEEEEE--CCCCCE-EEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 44678899999999 999985 7777655 58999998877665544 233455666555553 78999999
Q ss_pred cceEEEEee---eeeeEEECCCCcEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEEecCCCEEEE--EeCCCeE
Q 011924 298 TEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFAT--GNQDKTC 371 (475)
Q Consensus 298 ~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~t--~s~dg~v 371 (475)
+++.+.... .|.+++++++. ++++ .++.|++||+.++ +.+..+.. +...++++| .++++ |+.+|+|
T Consensus 90 ~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 90 KKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred CCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 988776554 67889998864 3433 4778999999988 66666654 455667777 56666 5789999
Q ss_pred EEEECCCCC--------------ce-EEEEecCCCceEEEEEccCCCEEEEEcCCCe-EEEEECCCCeeEEEEe-c-cCC
Q 011924 372 RIWDLRNLS--------------ES-VAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEI-D-FFG 433 (475)
Q Consensus 372 ~iwd~~~~~--------------~~-~~~~~~~~~~v~~l~~spdg~~la~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~ 433 (475)
++||++... .+ +..+.+|.+.|++++|+|+|++||+|+.|++ |+|||++++..+..+. + |.+
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 999997632 12 7889999999999999999999999999998 9999999999998888 5 899
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcc
Q 011924 434 EISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|.+++|+|+|++|++++.|+++.
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~ 265 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLH 265 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEE
T ss_pred cEEEEEECCCCCEEEEEECCCEEE
Confidence 999999999999999999998764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=219.24 Aligned_cols=244 Identities=12% Similarity=0.058 Sum_probs=156.6
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----------cCcEEEEEecCceEEEEeCC
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----------KDKLLVAGGFQGELICKHLD 217 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----------~~~~lvsg~~dg~i~vw~~~ 217 (475)
..++.|++|+..++.......+. . + .-|...|.+++| ++++|++|+.|++|++||+.
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~----~--------~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLG----G--------K-SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC----T--------T-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eCCCcEEEEECCCCccceeeeec----c--------c-CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 35789999998776553321111 0 0 113347888888 57899999999999999997
Q ss_pred CCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc------ccEEeccCCceEEEE
Q 011924 218 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP------WPVNVSSSYCIILLC 291 (475)
Q Consensus 218 ~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------~~v~~s~~~~~l~~~ 291 (475)
..+.. .....|...+.+++| +|++..+|++++.|++|++||+.+++........ ..+.+......
T Consensus 175 ~~~~~---~~~~~~~~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~---- 245 (393)
T 4gq1_A 175 DEGPI---LAGYPLSSPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV---- 245 (393)
T ss_dssp TTEEE---EEEEECSSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred CCcee---eeecCCCCCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce----
Confidence 65543 344567788999999 9998777999999999999999887655433211 11110000000
Q ss_pred EEeecccceEEEEeeeeeeEEEC-CCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE-----------------
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQS-PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS----------------- 353 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~----------------- 353 (475)
...........+.++.|+ |+|+.+++++.|+.+++||+.+++....+..|...+..+
T Consensus 246 -----~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 246 -----NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp -----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC
T ss_pred -----eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee
Confidence 000000111234477876 799999999999999999999887766666555444333
Q ss_pred -EEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 354 -AWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 354 -~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
.|+| ++.++++|+.||+|+|||+.. +.++..+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3444 445677888999999999977 667777778888999999999999999998766 7777653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=236.65 Aligned_cols=200 Identities=15% Similarity=0.207 Sum_probs=174.3
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC--CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG--KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~--~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
.++.+|.+.|++++| +|+|+. +++|+.||+|++|++. +++....+. |..+|.
T Consensus 3 ~~l~gH~~~V~~l~~--s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~---------------------- 57 (753)
T 3jro_A 3 VIANAHNELIHDAVL--DYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW---------------------- 57 (753)
T ss_dssp -----CCCCEEEECC--CSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE----------------------
T ss_pred eecccCcceeEEEEE--CCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCceE----------------------
Confidence 456789999999999 999986 9999999999999997 455666665 788899
Q ss_pred EEeeeeeeEEECCC--CcEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEEecC--CCEEEEEeCCCeEEEEEC
Q 011924 303 ICLLCLQHSSQSPD--GKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPN--GVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 303 ~~~~~i~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~~--~~~~l~~h~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~ 376 (475)
+++|+|+ +++|++++.||.|++||+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||+|++||+
T Consensus 58 -------~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 58 -------RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp -------EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred -------EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 9999997 9999999999999999999887 77788899999999999998 999999999999999999
Q ss_pred CCCC-ceEEEEecCCCceEEEEEcc-------------CCCEEEEEcCCCeEEEEECCCC----eeEEEEeccCCCeEEE
Q 011924 377 RNLS-ESVAVLKGNLGAIRSIRYTS-------------DGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGI 438 (475)
Q Consensus 377 ~~~~-~~~~~~~~~~~~v~~l~~sp-------------dg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l 438 (475)
+... .....+.+|...|.+++|+| ++++|++|+.||.|++||++++ .....+..|.+.|.++
T Consensus 131 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210 (753)
T ss_dssp CSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred ecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEE
Confidence 8642 34566778999999999999 5899999999999999999877 4556677899999999
Q ss_pred EEcCC---CCeEEEEEecCCcc
Q 011924 439 SFSPD---TESLFIGVWDRTYG 457 (475)
Q Consensus 439 ~fspd---g~~l~~~~~D~~~~ 457 (475)
+|+|+ +++|++|+.|+.+.
T Consensus 211 ~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp EECCCCSSSEEEEEEESSSCEE
T ss_pred EeccCCCCCCEEEEEecCCEEE
Confidence 99999 99999999998774
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-23 Score=207.48 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=185.1
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEe--eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR--TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
+.++++ ++.++++++.++.|++|++.......... ....|...+.+++| +|++.. +++++.|+.|++||+.++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI--PEHNEL-WVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE--GGGTEE-EEEEGGGTEEEEEETTTC
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE--cCCCEE-EEEECCCCEEEEEECCCc
Confidence 346666 56778888889999999998765442111 23478889999999 998875 899999999999999998
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeec
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~ 345 (475)
+.+..+. +...+. +++|+|+++.+++++ .++.|++||+++++.+..+..
T Consensus 202 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 202 AYKATVDLTGKWSK-----------------------------ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp CEEEEEECSSSSEE-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC
T ss_pred eEEEEEcCCCCCee-----------------------------EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC
Confidence 8888776 566788 999999999886555 789999999999998888875
Q ss_pred CCCCeEEEEEecCCCEEEEEe--------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE-EEEcCCCeEEE
Q 011924 346 HLDFSFASAWHPNGVTFATGN--------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPADFVHV 416 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s--------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-a~~~~dg~i~i 416 (475)
+ ..+.+++|+|+++++++++ .|+.|++||+++ ++.+..+ .+...+.+++|+|+|+.| ++++.++.|++
T Consensus 253 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 253 I-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp C-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred C-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 4 4599999999999999988 588999999976 5555554 345578899999999755 56688999999
Q ss_pred EECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
||+.+++....+. +...+.+++|+|+|++|++++.+
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECC
T ss_pred EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecC
Confidence 9999988776654 67889999999999999998864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=206.63 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=174.1
Q ss_pred CcEEEEEecC------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC---eEEEEECCCCee
Q 011924 199 DKLLVAGGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC---GVRDFDMGKYQL 269 (475)
Q Consensus 199 ~~~lvsg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg---~v~iwd~~~~~~ 269 (475)
+..++.++.+ +.|++|++..... ..+..|...+.+++| +|+|+. |++++.++ .|++||+.+++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----~~l~~~~~~v~~~~~--Spdg~~-la~~s~~~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----FVVHRSPQPLMSPAW--SPDGSK-LAYVTFESGRSALVIQTLANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----EEEEEESSCEEEEEE--CTTSSE-EEEEECTTSSCEEEEEETTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----EEEeCCCCcceeeEE--cCCCCE-EEEEEecCCCcEEEEEECCCCcE
Confidence 5566665554 7999999974332 334456778999999 999997 77777775 999999999887
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE-EEeCCC--cEEEEECCCCceEEEeecC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI-IVGDNP--DGLLVDSMTGKTIASLCGH 346 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~-~~~~dg--~i~iwd~~~~~~~~~l~~h 346 (475)
.....+...+. +++|+|+|+.|+ +++.++ .|++||+.+++. ..+..|
T Consensus 216 ~~l~~~~~~~~-----------------------------~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~ 265 (415)
T 2hqs_A 216 RQVASFPRHNG-----------------------------APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG 265 (415)
T ss_dssp EEEECCSSCEE-----------------------------EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC
T ss_pred EEeecCCCccc-----------------------------CEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC
Confidence 65555777788 999999999888 555554 499999988875 577788
Q ss_pred CCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC---CeEEEEECC
Q 011924 347 LDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVK 420 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d---g~i~iwd~~ 420 (475)
...+.+++|+|+|++|++++. ++ .|.+||+.. ++ ...+..+...+.+++|+|+|++|++++.+ ..|++||+.
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 899999999999999998886 45 677788865 33 44556666788999999999999988764 589999999
Q ss_pred CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
++... .+..+. .+.+++|+|+|++|++++.|+....+..+
T Consensus 344 ~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 344 TGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp TCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred CCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 88653 444443 89999999999999999988754444444
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-22 Score=203.34 Aligned_cols=278 Identities=13% Similarity=0.098 Sum_probs=209.7
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeC--CCCCceEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHL--DRPGVSFC 224 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~--~~~~~~~~ 224 (475)
.++.|.+|+..+++....+... + .+.++++ ++++|++++.++.|.+||+ .+....
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g-----------------~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~-- 215 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTG-----------------Y--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV-- 215 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECS-----------------T--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--
T ss_pred CCCeEEEEECCCceEEEEEecC-----------------c--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--
Confidence 3588999999888765554321 1 1456666 8999999999999999999 443322
Q ss_pred EeeecCCCCceeEEEEEeCC----CCCeEEEEEeCCCeEEEEECCCCeeeeeeec---------------cccEEeccCC
Q 011924 225 SRTTYDDNAITNAVEIYGSP----SGAVHFTASNNDCGVRDFDMGKYQLSKHFRF---------------PWPVNVSSSY 285 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s~----~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---------------~~~v~~s~~~ 285 (475)
..+. +......++| +| +|++++++...+++|.+||..+++++..+.. ...+.+++++
T Consensus 216 -~~i~-~g~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 216 -AEIK-IGIEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp -EEEE-CCSEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred -EEEe-cCCCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 2333 3445688888 99 9998555555689999999999988877652 1245678877
Q ss_pred ceEE-------EEEEeecccceEE-----EEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeec----CCC
Q 011924 286 CIIL-------LCRLLNFMTEKVI-----ICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG----HLD 348 (475)
Q Consensus 286 ~~l~-------~~~v~d~~~~~~~-----~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~----h~~ 348 (475)
..+. .+.+||..+.+.+ .....+.+++|+|+|++|++++ .++.|.+||+.+++++..+.. |.+
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 6653 5788888764422 2223566899999999877665 588999999999999988874 655
Q ss_pred CeEEEEEecC-CCEEEEEe-CCCeEEEEECCCC------CceEEEEecCCCceEEEEEccCCCEEEEEcC-------CCe
Q 011924 349 FSFASAWHPN-GVTFATGN-QDKTCRIWDLRNL------SESVAVLKGNLGAIRSIRYTSDGRYMATAEP-------ADF 413 (475)
Q Consensus 349 ~v~~~~~sp~-g~~l~t~s-~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~spdg~~la~~~~-------dg~ 413 (475)
....+ ++|+ +.++++++ .|++|.|||+... .+.++++.++.+.+..++|+|+|++|++++. +++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 44443 5786 66777775 5899999999652 5789999998888889999999999999872 679
Q ss_pred EEEEECCCCeeEEEEe---------ccCCCeEEEEEcCCCCeEEEEEe
Q 011924 414 VHVYDVKSGYEKEQEI---------DFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 414 i~iwd~~~~~~~~~~~---------~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
|.|||+.+++...... .+...+..+.|+|+|+.|+++.|
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 9999999988763332 34578999999999999999877
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-23 Score=191.91 Aligned_cols=250 Identities=15% Similarity=0.089 Sum_probs=188.6
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCC-CCceEEEe
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR-PGVSFCSR 226 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~-~~~~~~~~ 226 (475)
+..|.+|+..+++...+... ...|.+++| ++++|++++ ++.|++|++.. .... .
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~-------------------~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~---~ 77 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT-------------------PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE---K 77 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE-------------------SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE---E
T ss_pred ceeEEEEeCCCCceeeeccC-------------------CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce---E
Confidence 47789999887766554332 235778888 889998876 88999999987 5443 3
Q ss_pred eecCC-CCceeEEEEEeCCCCCeEEEEEe--CCCeEEE--EECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceE
Q 011924 227 TTYDD-NAITNAVEIYGSPSGAVHFTASN--NDCGVRD--FDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKV 301 (475)
Q Consensus 227 ~~~~~-~~~v~~l~~~~s~~g~~~l~s~s--~dg~v~i--wd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~ 301 (475)
....+ ...+.+++| +|+|+. +++++ .++.++| |++.+++ ...+.....+.
T Consensus 78 ~~~~~~~~~~~~~~~--spdg~~-l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~--------------------- 132 (297)
T 2ojh_A 78 VDTGFATICNNDHGI--SPDGAL-YAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSY--------------------- 132 (297)
T ss_dssp CCCTTCCCBCSCCEE--CTTSSE-EEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEE---------------------
T ss_pred eccccccccccceEE--CCCCCE-EEEEEeCCCCcceEEEEECCCCc-eEEeecCCCcc---------------------
Confidence 33333 467888999 999997 66666 3344444 4555544 33344444466
Q ss_pred EEEeeeeeeEEECCCCcEEE-EEeCCCcEEEEECC-CCceEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC
Q 011924 302 IICLLCLQHSSQSPDGKLLI-IVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRN 378 (475)
Q Consensus 302 ~~~~~~i~~~~~sp~g~~l~-~~~~dg~i~iwd~~-~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~ 378 (475)
+++|+|+|+.|+ +++.++.+.||++. .+.....+..+...+.+++|+|++++|++++ .++.++||++..
T Consensus 133 --------~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 133 --------WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp --------EEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred --------ceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 889999999887 67788988999853 2334566777888999999999999888776 589999999874
Q ss_pred CCceEEEEecCCCceEEEEEccCCCEEEEEcCC-----------CeEEEEECCCCeeE--EEEeccCCCeEEEEEcCCCC
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----------DFVHVYDVKSGYEK--EQEIDFFGEISGISFSPDTE 445 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~fspdg~ 445 (475)
....+..+..+...+..++|+|+|++|++++.+ +.|.+||+.++... .....|.+.+..++|+|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 205 DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS
T ss_pred CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC
Confidence 466677888888889999999999999988765 56999999887653 33446788999999999999
Q ss_pred eEEEEEecCC
Q 011924 446 SLFIGVWDRT 455 (475)
Q Consensus 446 ~l~~~~~D~~ 455 (475)
+|++++.|..
T Consensus 285 ~l~~~~~~~~ 294 (297)
T 2ojh_A 285 EFAYVRYFPV 294 (297)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeccC
Confidence 9999988754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-22 Score=198.69 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=184.8
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc---eEEEEeCCCCCceEEE
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG---ELICKHLDRPGVSFCS 225 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg---~i~vw~~~~~~~~~~~ 225 (475)
..|++|+...+....+... ...|.+++| +|+.|++++.++ .|++|++.+....
T Consensus 159 ~~i~i~d~~g~~~~~l~~~-------------------~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--- 216 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS-------------------PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 216 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE-------------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred ceEEEEcCCCCCCEEEeCC-------------------CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---
Confidence 6889999765443333221 235888888 899999999875 9999999865533
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe--EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVII 303 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~--v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~ 303 (475)
....+...+.+++| +|+|+.++++++.++. |++||+.+++......+...+.
T Consensus 217 -~l~~~~~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~----------------------- 270 (415)
T 2hqs_A 217 -QVASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT----------------------- 270 (415)
T ss_dssp -EEECCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEE-----------------------
T ss_pred -EeecCCCcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCccc-----------------------
Confidence 23456678899999 9999986667776654 9999999887755445667777
Q ss_pred EeeeeeeEEECCCCcEEEEEeC-CC--cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECC
Q 011924 304 CLLCLQHSSQSPDGKLLIIVGD-NP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---KTCRIWDLR 377 (475)
Q Consensus 304 ~~~~i~~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d---g~v~iwd~~ 377 (475)
+++|+|+|+.|++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ ..|.+||+.
T Consensus 271 ------~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 271 ------EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp ------EEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred ------ceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 9999999999998876 44 688889987764 4566677889999999999999988864 589999997
Q ss_pred CCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC
Q 011924 378 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 445 (475)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~ 445 (475)
+ ++. ..+..+. .+.+++|+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|.-.
T Consensus 344 ~-~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 344 T-GGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp T-CCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred C-CCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 6 444 4555554 789999999999999988776 79999987 556777888999999999999754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-21 Score=187.80 Aligned_cols=269 Identities=10% Similarity=0.066 Sum_probs=202.8
Q ss_pred cceeEEecCCCeEEEec--------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcE-
Q 011924 133 LRNLVWATSKHDVYLMS--------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKL- 201 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~--------~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~- 201 (475)
...+.++++...+|+.. ++.|..|+..+++....+...+ .+..+++ ++++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------------------~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-------------------KPFGATINNTTQTL 103 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-------------------CCCSEEEETTTTEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-------------------CcceEEECCCCCEE
Confidence 45667888888888876 5689999998887666554321 1223444 7774
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCC------CceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCeeeeeee
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDN------AITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~------~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~~~~~~~ 274 (475)
++++..++.|.+|++.+.+............ ..+..+.+ +|+|+.+++++ +.++.|.+||+.+++.+..+.
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 4555668999999998766543222211110 12577888 99999755555 358899999999999888877
Q ss_pred -ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec----CCCC
Q 011924 275 -FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG----HLDF 349 (475)
Q Consensus 275 -~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~----h~~~ 349 (475)
....+. +++|+|+|+.+++++.++.|.+||+.+++.+..+.. +...
T Consensus 182 ~~~~~~~-----------------------------~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 182 NTGKMST-----------------------------GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp CCCTTCC-----------------------------CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred CCCCccc-----------------------------eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 444466 889999999999999999999999999998887764 5567
Q ss_pred eEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEE
Q 011924 350 SFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~ 427 (475)
+.+++|+|+++++++++. ++.|.+||+.+ ++.+..+.... ...++|+|+|++|+++. .++.|.+||+.+++.+..
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 888999999998777765 48999999976 67677766543 25799999999666555 689999999999987766
Q ss_pred EeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 428 EIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 428 ~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+.. ...+.+++|+|+|++|+++..++.
T Consensus 310 ~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 310 FDT-PTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EEC-CSEEEEEEECTTSCEEEEEEECCC
T ss_pred Eec-CCCCCeEEEcCCCCEEEEEEcccc
Confidence 654 457899999999999998877643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-20 Score=180.87 Aligned_cols=266 Identities=13% Similarity=0.092 Sum_probs=186.3
Q ss_pred eEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec-Cce
Q 011924 136 LVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF-QGE 210 (475)
Q Consensus 136 l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~-dg~ 210 (475)
+++......+|.+ .++.|.+|+..+++....+... ...+ ++++ ++++|++++. ++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~------------------~~~~-~~~~s~dg~~l~~~~~~~~~ 63 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG------------------YDFV-DTAITSDCSNVVVTSDFCQT 63 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC------------------CCEE-EEEECSSSCEEEEEESTTCE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc------------------CCcc-eEEEcCCCCEEEEEeCCCCe
Confidence 4455566666664 4588999999888775554321 1133 6666 7876665554 899
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-C--eEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-C--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
|.+|++...... ......+..+..+++| +|+|+. ++++..+ + .|++||+.+++.+..+.......
T Consensus 64 i~~~d~~~~~~~--~~~~~~~~~~~~~~~~--s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~------- 131 (331)
T 3u4y_A 64 LVQIETQLEPPK--VVAIQEGQSSMADVDI--TPDDQF-AVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV------- 131 (331)
T ss_dssp EEEEECSSSSCE--EEEEEECSSCCCCEEE--CTTSSE-EEECCCSSSSCEEEEEETTTTEEEEEEECCTTEE-------
T ss_pred EEEEECCCCcee--EEecccCCCCccceEE--CCCCCE-EEEecCCCCcccEEEEECCCCCeEEEEECCCCcc-------
Confidence 999999877652 1333344555555888 999997 4455444 3 89999999999888887666667
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCc-EEEEECCCCceEE----EeecCCCCeEEEEEecCCCE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPD-GLLVDSMTGKTIA----SLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~-i~iwd~~~~~~~~----~l~~h~~~v~~~~~sp~g~~ 361 (475)
+++|+|+|++++++ ..++. +.+|++.....+. ........+..++|+|+|++
T Consensus 132 ----------------------~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 132 ----------------------GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp ----------------------EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred ----------------------ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence 99999999866555 55578 9999987543321 12234456899999999996
Q ss_pred EEEEe-CCCeEEEEECCCCCce---EEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCee--EEEEecc---
Q 011924 362 FATGN-QDKTCRIWDLRNLSES---VAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYE--KEQEIDF--- 431 (475)
Q Consensus 362 l~t~s-~dg~v~iwd~~~~~~~---~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~--~~~~~~~--- 431 (475)
+++++ .+++|.+||+.. ++. +..+..+ ..+..++|+|+|++|+++. .++.|.+||+.+++. +..+...
T Consensus 190 l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQN-PENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp EEEEETTTTEEEEEECSS-TTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred EEEEeCCCCeEEEEECCC-CcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence 65554 689999999976 565 6666654 5678999999999777665 467899999999876 3333322
Q ss_pred -CC---CeEEEEEcCCCCeEEEEEecCCc
Q 011924 432 -FG---EISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 432 -~~---~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.. ....++|+|||++|++++.++..
T Consensus 268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 296 (331)
T 3u4y_A 268 DPRPLFGANQMALNKTETKLFISANISRE 296 (331)
T ss_dssp CCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred CCCCcccccceEECCCCCEEEEecCCCCc
Confidence 11 23568999999999988877643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-21 Score=182.97 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=162.8
Q ss_pred eEEEEEE--cCcEEEEEecC-ceEEEEeCC--CCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 191 QVSTLAV--KDKLLVAGGFQ-GELICKHLD--RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
.+.++++ ++++|++++.+ +.|.+|+++ ...... ......+ ..+..++| +|+|+.+++++..++.|.+|++.
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESALP-GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEECS-SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccccccC-CCCcEEEE--cCCCCEEEEEecCCCeEEEEECC
Confidence 3455666 88888888876 999999997 333222 2222222 26788888 99999856666668999999993
Q ss_pred ---CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCC-CceE
Q 011924 266 ---KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTI 340 (475)
Q Consensus 266 ---~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~-~~~~ 340 (475)
..+....+.....+. +++|+|+|+.+++++ .++.|.+||+.+ ++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCH-----------------------------SANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp TTEEEEEEEEECCCTTBC-----------------------------CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CCccccccccccCCCCce-----------------------------EEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 444444554444566 889999999888887 889999999987 6543
Q ss_pred E----Eeec-CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC-Cce--EEEEec---C---CCceEEEEEccCCCEE
Q 011924 341 A----SLCG-HLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNL-SES--VAVLKG---N---LGAIRSIRYTSDGRYM 405 (475)
Q Consensus 341 ~----~l~~-h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~-~~~--~~~~~~---~---~~~v~~l~~spdg~~l 405 (475)
. .+.. ....+.+++|+|+++++++++ .++.|.+||+... +.. ...+.. . ...+..++|+|+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 2 2333 334788999999999776555 7899999999531 221 222221 1 2356689999999988
Q ss_pred EE-EcCCCeEEEEECC--CC--eeEEEEeccCCCeEEEEEcCCCCeEEEEEe-cCCc
Q 011924 406 AT-AEPADFVHVYDVK--SG--YEKEQEIDFFGEISGISFSPDTESLFIGVW-DRTY 456 (475)
Q Consensus 406 a~-~~~dg~i~iwd~~--~~--~~~~~~~~~~~~i~~l~fspdg~~l~~~~~-D~~~ 456 (475)
++ +..++.|.+||+. ++ ..+..+..+ +.+.+++|+|+|++|++++. |+.+
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeE
Confidence 74 4578999999998 33 333333333 44899999999999998874 4433
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-21 Score=202.98 Aligned_cols=311 Identities=10% Similarity=0.032 Sum_probs=221.2
Q ss_pred cceeEEecCCCeEEEec--CC-----eEEEEecCCCCceEEEeccCCCCCCCCC---CCCcccccc----ceeEEEEEE-
Q 011924 133 LRNLVWATSKHDVYLMS--HF-----SVIHWSSLTSSRSQVLNVSGHVAPSEKH---PGSLLEGFT----QTQVSTLAV- 197 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~--~~-----~v~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~v~~l~~- 197 (475)
.+.+.|++++..|++.+ ++ .|.+|+..+++...++...+.. |.... ......... ...|.+++|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEEC
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccccccchhhhhhhhhhhccccCcceeEEC
Confidence 45677899998888865 45 8999999888877766543221 00000 000000000 023667777
Q ss_pred -cCcEEEEEecCceEEEEeCCCCC--ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 198 -KDKLLVAGGFQGELICKHLDRPG--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 -~~~~lvsg~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
+|++|++++. +.|++|++.... .. ..+..+...+..++| ||+|+. |+.++ ++.|++||+.+++......
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~--SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKL--SPKGGF-VSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEE--CTTSSE-EEEEE-TTEEEEEETTTTEEEECCC
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccC--CCCCCE-EEEEe-CCcEEEEecCCCCEEEecc
Confidence 8999998876 999999998751 12 233456677889999 999997 66665 5699999999887665433
Q ss_pred c--------------------cccEEeccCCceEE---------------------------------------EEEEee
Q 011924 275 F--------------------PWPVNVSSSYCIIL---------------------------------------LCRLLN 295 (475)
Q Consensus 275 ~--------------------~~~v~~s~~~~~l~---------------------------------------~~~v~d 295 (475)
. ...+.|||++..|+ .+.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 1 25678999998774 345678
Q ss_pred ccc-ceEEEEe------eeeeeEEECCCCcEEEEEeC-----CCcEEEEECCCCceEEEeecCCC----CeEEEEEecCC
Q 011924 296 FMT-EKVIICL------LCLQHSSQSPDGKLLIIVGD-----NPDGLLVDSMTGKTIASLCGHLD----FSFASAWHPNG 359 (475)
Q Consensus 296 ~~~-~~~~~~~------~~i~~~~~sp~g~~l~~~~~-----dg~i~iwd~~~~~~~~~l~~h~~----~v~~~~~sp~g 359 (475)
..+ ++..... ..+..++| |+|+.|++++. +..|++||+.+++....+..+.. .+.+++|+|+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 777 6654332 25678999 99999997753 56799999999988777766543 45689999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE-EEccCCCEEEEE-cCCC--eEEEEECCC-CeeEEEEeccCCC
Q 011924 360 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI-RYTSDGRYMATA-EPAD--FVHVYDVKS-GYEKEQEIDFFGE 434 (475)
Q Consensus 360 ~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-~~spdg~~la~~-~~dg--~i~iwd~~~-~~~~~~~~~~~~~ 434 (475)
+++++++.++.++||.+...+. ...+..+...+..+ .|+|+|+.|+.. +.++ .++||++.. +..+..+.. ...
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~ 426 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APG 426 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCS
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCC
Confidence 9999999999888887753345 77788787788887 599999977654 4454 899999864 444455544 667
Q ss_pred eEEEEEcCCCCeEEEEEecCC
Q 011924 435 ISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~~ 455 (475)
+..++|||||++|++...+..
T Consensus 427 ~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 427 MHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETT
T ss_pred ceEEEECCCCCEEEEEecCCC
Confidence 889999999999998766544
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-20 Score=193.14 Aligned_cols=245 Identities=12% Similarity=0.092 Sum_probs=192.3
Q ss_pred EEcCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC--CCCeeeee
Q 011924 196 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM--GKYQLSKH 272 (475)
Q Consensus 196 ~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~--~~~~~~~~ 272 (475)
+.++.++++++.+++|.+||..+.+.. ..+. ++. +..+++ +|+|++ +++++.|++|++||+ .+++.+..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~---~~i~~g~~--~~~v~~--spdg~~-l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIV---KVIDTGYA--VHISRM--SASGRY-LLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEE---EEEECSTT--EEEEEE--CTTSCE-EEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEE---EEEecCcc--cceEEE--CCCCCE-EEEECCCCeEEEEECcCCCCcEEEE
Confidence 347788999999999999999876654 2333 333 778888 999997 778888999999999 88888877
Q ss_pred ee---ccccEEecc----CCceEE-------EEEEeecccceEEEEee---------------eeeeEEECCCCcEE-EE
Q 011924 273 FR---FPWPVNVSS----SYCIIL-------LCRLLNFMTEKVIICLL---------------CLQHSSQSPDGKLL-II 322 (475)
Q Consensus 273 ~~---~~~~v~~s~----~~~~l~-------~~~v~d~~~~~~~~~~~---------------~i~~~~~sp~g~~l-~~ 322 (475)
+. .+..+.|+| +++.++ .+.+||..+++.+..+. .+.++.++|++..+ ++
T Consensus 218 i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 218 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 76 355677999 998874 57899999888766543 35688999976654 55
Q ss_pred EeCCCcEEEEECCCCceEE--EeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEEEEec----CCCceEE
Q 011924 323 VGDNPDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKG----NLGAIRS 395 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~~~~~--~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~ 395 (475)
...++.|.+||+.+++.+. .+. +...+.+++|+|+|++|++++ .+++|.+||+.+ ++++..+.. |.+....
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCCTTCEE
T ss_pred ECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCCCCCcc
Confidence 5678999999998776543 443 567788999999999877665 588999999987 778877764 4433333
Q ss_pred EEEccC-CCEEEEEc-CCCeEEEEECCC-------CeeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 396 IRYTSD-GRYMATAE-PADFVHVYDVKS-------GYEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 396 l~~spd-g~~la~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
+ ++|+ |++++++. .+++|.|||+.+ ++.+.++..|.+.+..++|+|+|++|++++
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 3 4787 66777775 579999999988 788889988888899999999999999986
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-21 Score=203.48 Aligned_cols=256 Identities=8% Similarity=0.003 Sum_probs=192.8
Q ss_pred ceeEEEEEE--cCcEEEEEec-Cc-----eEEEEeCCCCCceEEEeeecCC--C----------------------Ccee
Q 011924 189 QTQVSTLAV--KDKLLVAGGF-QG-----ELICKHLDRPGVSFCSRTTYDD--N----------------------AITN 236 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~-dg-----~i~vw~~~~~~~~~~~~~~~~~--~----------------------~~v~ 236 (475)
...+.+++| +|++|++++. +| .|++|++.+.... .+...+ . ..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---EEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---EccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 446888888 8999999988 88 9999999876543 222221 1 2367
Q ss_pred EEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---eeeeeeec---cccEEeccCCceEE-----EEEEeecccceEEEEe
Q 011924 237 AVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---QLSKHFRF---PWPVNVSSSYCIIL-----LCRLLNFMTEKVIICL 305 (475)
Q Consensus 237 ~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~---~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~ 305 (475)
.++| ||+|+. |++++. +.|++||+.++ +......+ ...+.|||+|..++ .+.+||..+++.....
T Consensus 113 ~~~~--SpDg~~-l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 113 DYQW--SPDAQR-LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CCEE--CTTSSE-EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred eeEE--CCCCCE-EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 8888 999997 666655 99999999887 44333323 34567999999886 5789999887765432
Q ss_pred ee--------------------eeeEEECCCCcEEEEEeCCC---------------------------------cEEEE
Q 011924 306 LC--------------------LQHSSQSPDGKLLIIVGDNP---------------------------------DGLLV 332 (475)
Q Consensus 306 ~~--------------------i~~~~~sp~g~~l~~~~~dg---------------------------------~i~iw 332 (475)
.. +.+++|||||++|++++.++ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 21 36799999999999987665 78899
Q ss_pred ECCC-CceEEEee--cCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCCceEEEEecCCC----ceEEEEEcc
Q 011924 333 DSMT-GKTIASLC--GHLDFSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNLSESVAVLKGNLG----AIRSIRYTS 400 (475)
Q Consensus 333 d~~~-~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~-----dg~v~iwd~~~~~~~~~~~~~~~~----~v~~l~~sp 400 (475)
|+.+ ++...... .|...+.+++| |||++|++++. +..|.+||+.+ ++....+..+.. .+..++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcCCceEECC
Confidence 9988 87655443 37788999999 99999997764 56899999976 666666655443 456899999
Q ss_pred CCCEEEEEcCCCeEEEEECC-CCeeEEEEeccCCCeEEE-EEcCCCCeEEEEEecC
Q 011924 401 DGRYMATAEPADFVHVYDVK-SGYEKEQEIDFFGEISGI-SFSPDTESLFIGVWDR 454 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l-~fspdg~~l~~~~~D~ 454 (475)
||+++++++.++.++||.+. ++. ...+..+...+..+ .|||+|+.|+..+.+.
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 99999999999988888765 344 66777777888887 5999999887665544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=178.57 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=167.6
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCC-ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc-
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW- 277 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~- 277 (475)
++|++++.++.|.+||+.+.+... .+...+.. .+..++| +|+|+.++++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK--VITIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE--EEECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE--EEEcCCCCCCccceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 578999999999999998655432 22223221 3677888 99998877788788999999999988877766432
Q ss_pred -----cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe------------CCCcEEEEECCCCceE
Q 011924 278 -----PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG------------DNPDGLLVDSMTGKTI 340 (475)
Q Consensus 278 -----~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~------------~dg~i~iwd~~~~~~~ 340 (475)
.+. +++|+|+|++|+++. .++.|.+||+.+++.+
T Consensus 78 ~~~~~~~~-----------------------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 78 EERVKSLF-----------------------------GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp TEEEECTT-----------------------------CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred cccccccc-----------------------------ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 334 889999999998886 5799999999999888
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-------------------------------
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN------------------------------- 389 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~------------------------------- 389 (475)
..+.. ...+.+++|+|+|++|+++ ++.|.+||+.+ ++.+..+..+
T Consensus 129 ~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 129 KAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp EEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred EEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC-CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeec
Confidence 77764 4567889999999988888 57899999875 4443333221
Q ss_pred -----------------------------------CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 390 -----------------------------------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 390 -----------------------------------~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
...+.+++|+|+|++|+++ ++.|.+||+.+++.+..+. ....
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~ 281 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHS 281 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSC
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCc
Confidence 1234568999999999988 6899999999988776655 3456
Q ss_pred eEEEEEcCCCCeEEEEEecCCc
Q 011924 435 ISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+.+++|+|+|++|++++.|+.+
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEE
T ss_pred eeeEEECCCCCEEEEEcCCCcE
Confidence 8899999999999998666543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=197.84 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=185.6
Q ss_pred ccceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 132 QLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
.+..+.|+++ ..+++..+..+.+|+..+++...+....+ .+.+++| +|+.|+++ .++
T Consensus 83 ~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-------------------~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNE-------------------ETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp CCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTT-------------------CCTTCEECTTSSEEEEE-ETT
T ss_pred CceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcc-------------------cccCCcCCCCCCEEEEE-ECC
Confidence 4556668888 77777788999999988776554432211 2333445 88898885 689
Q ss_pred eEEEEeCCC-----CCceEEEeeecCCCCc--------------eeEEEEEeCCCCCeEEEEEe----------------
Q 011924 210 ELICKHLDR-----PGVSFCSRTTYDDNAI--------------TNAVEIYGSPSGAVHFTASN---------------- 254 (475)
Q Consensus 210 ~i~vw~~~~-----~~~~~~~~~~~~~~~~--------------v~~l~~~~s~~g~~~l~s~s---------------- 254 (475)
.|++|++.. .... .+...+... +.++.| ||+|+. |++++
T Consensus 142 ~i~v~~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~~~~~--SpDg~~-la~~~~d~~~~~~~~~~~~~~ 215 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEKGTFW--SPKGSC-LAFYRMDQSMVKPTPIVDYHP 215 (706)
T ss_dssp EEEEEECBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCCSEEE--CTTSSE-EEEEEEECTTSCCEEEEECCS
T ss_pred eEEEEecCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCceEEE--CCCCCE-EEEEEECCCCCceEEeeccCC
Confidence 999999986 4433 222222222 477888 999997 55554
Q ss_pred -----------------CCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC
Q 011924 255 -----------------NDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS 314 (475)
Q Consensus 255 -----------------~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s 314 (475)
.+..|++||+.+++...... +...+. +++|+
T Consensus 216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~s 266 (706)
T 2z3z_A 216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT-----------------------------NLSWS 266 (706)
T ss_dssp SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE-----------------------------EEEEC
T ss_pred CCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe-----------------------------eEEEE
Confidence 23445555555554332221 222333 89999
Q ss_pred CCCcEEEEEeCCC-----cEEEEECCCCceEEEee--cCCC---CeEEEEEec--CCCEEEEEeCCCeEEEEECCCCCce
Q 011924 315 PDGKLLIIVGDNP-----DGLLVDSMTGKTIASLC--GHLD---FSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 315 p~g~~l~~~~~dg-----~i~iwd~~~~~~~~~l~--~h~~---~v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
|+|+.|++++.++ .|++||+.+++....+. .+.. .+.+++|+| +|+++++++.++.++||.+...+..
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence 9999999987665 89999999984444332 2222 246789999 9999999999999999988644677
Q ss_pred EEEEecCCCceEE-EEEccCCCEEEEEcCC-C----eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 383 VAVLKGNLGAIRS-IRYTSDGRYMATAEPA-D----FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 383 ~~~~~~~~~~v~~-l~~spdg~~la~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+..+..+...+.. ++|+|+|+.|+.++.+ + .|..||+.++. ... ..+...+.+++|||||++|+.++.+..
T Consensus 347 ~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~-l~~~~~~~~~~~spdg~~l~~~~~~~~ 423 (706)
T 2z3z_A 347 IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD-LTPESGMHRTQLSPDGSAIIDIFQSPT 423 (706)
T ss_dssp EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE-SCCSSSEEEEEECTTSSEEEEEEECSS
T ss_pred EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee-ccCCCceEEEEECCCCCEEEEEecCCC
Confidence 7888877777876 7999999987765544 3 67777877765 223 336677999999999999988765543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-21 Score=189.71 Aligned_cols=235 Identities=11% Similarity=0.028 Sum_probs=166.7
Q ss_pred EEEEEcCcEEEEEecCceEEEEeCCCC----------CceE--EEeeecCCCCceeEEEEEeCCCCCeEEE---EEeCCC
Q 011924 193 STLAVKDKLLVAGGFQGELICKHLDRP----------GVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFT---ASNNDC 257 (475)
Q Consensus 193 ~~l~~~~~~lvsg~~dg~i~vw~~~~~----------~~~~--~~~~~~~~~~~v~~l~~~~s~~g~~~l~---s~s~dg 257 (475)
.+++.++.++++|+.+| +++|+.... .... .......+...|.+++| +|+|+.+++ +++.|+
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEETTTEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEeccCCCc
Confidence 34444788999999888 888765311 0000 00112235667999999 999997443 788999
Q ss_pred eEEEEECCCC--------ee---eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-CcEEEEEe
Q 011924 258 GVRDFDMGKY--------QL---SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-GKLLIIVG 324 (475)
Q Consensus 258 ~v~iwd~~~~--------~~---~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~ 324 (475)
+|++||+.++ +. +..+. |...|. +++|+|+ +.+|++++
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-----------------------------~v~~~p~~~~~las~s 169 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-----------------------------DMKWNPTVPSMVAVCL 169 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-----------------------------EEEECSSCTTEEEEEE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceE-----------------------------EEEECCCCCCEEEEEE
Confidence 9999998654 22 22222 577888 9999997 89999999
Q ss_pred CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-------CceEEEE
Q 011924 325 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-------GAIRSIR 397 (475)
Q Consensus 325 ~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-------~~v~~l~ 397 (475)
.||.|++||++++..+....+|...|.+++|+|+|++|++|+.||+|++||++ +.....+..+. ..|.+++
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEE
Confidence 99999999999998777777899999999999999999999999999999997 34555554432 3789999
Q ss_pred EccCCCEEEEEc-CCC------eEEEEECCCCe-----eEEEEecc-------CCCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 398 YTSDGRYMATAE-PAD------FVHVYDVKSGY-----EKEQEIDF-------FGEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 398 ~spdg~~la~~~-~dg------~i~iwd~~~~~-----~~~~~~~~-------~~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
|++++.++++.+ .+| .+++|++.+.. ....+... ..+...+.+-++.+++++++....--.
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~ 327 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVS 327 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCE
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCcee
Confidence 999998876543 333 39999997642 11111111 122223344488888888877655444
Q ss_pred EEE
Q 011924 459 LLE 461 (475)
Q Consensus 459 ll~ 461 (475)
++.
T Consensus 328 vl~ 330 (434)
T 2oit_A 328 ILA 330 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=174.35 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=163.0
Q ss_pred EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeeec--cccEE
Q 011924 204 AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRF--PWPVN 280 (475)
Q Consensus 204 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~--~~~v~ 280 (475)
.++.++.|++|++...... .+..|...+.+++| +|+|+. +++++ ++.|++||+.+ ++....... ...+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----~~~~~~~~v~~~~~--spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----VVWQTPELFEAPNW--SPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----EEEEESSCCEEEEE--CTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCcee----eeccCCcceEeeEE--CCCCCE-EEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 4567899999999865433 23346778999999 999996 66664 88999999998 776655542 24556
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC--C--CcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD--N--PDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--d--g~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
+++|+|+|++|++++. + ..|.++++.+++ ...+..+. .+..++|+
T Consensus 89 -----------------------------~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~s 137 (297)
T 2ojh_A 89 -----------------------------DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWS 137 (297)
T ss_dssp -----------------------------CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEEC
T ss_pred -----------------------------ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEEC
Confidence 8899999999999983 3 445555555555 44555443 48899999
Q ss_pred cCCCEEE-EEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECC-CCeeEEEEeccCC
Q 011924 357 PNGVTFA-TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVK-SGYEKEQEIDFFG 433 (475)
Q Consensus 357 p~g~~l~-t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~-~~~~~~~~~~~~~ 433 (475)
|++++|+ +++.++.++||++.........+..+...+.+++|+|+|++|++++ .++.++||++. .+.....+..+..
T Consensus 138 pdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 138 PDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred CCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 9999887 7788999999997543455667777778899999999999888766 58889999875 4556667777778
Q ss_pred CeEEEEEcCCCCeEEEEEecC
Q 011924 434 EISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+..++|+|+|++|++++.++
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEET
T ss_pred ccCCeEECCCCCEEEEEEcCC
Confidence 899999999999999998875
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-19 Score=173.02 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=156.2
Q ss_pred EEEEE--cCcEEEEEec---CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-
Q 011924 193 STLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~- 266 (475)
..+++ +++ |++++. ++.|.+|++....... ......+...+..++| +|+|+.+++++..++.|++|++..
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-~~~~~~~~~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-LNTVVAPGTPPAYVAV--DEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-EEEEEEESCCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-eeeeecCCCCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 34555 777 555544 6899999996544322 2222334556788888 999997455554789999999963
Q ss_pred Ce--eeeeeecc--c--------cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 267 YQ--LSKHFRFP--W--------PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 267 ~~--~~~~~~~~--~--------~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
+. .+..+... . .+. +++|+|+|+++++...++.|.+|++
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~-----------------------------~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIH-----------------------------YTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEE-----------------------------EEEECTTSCEEEEETTTTEEEEEEE
T ss_pred CCeeecceeecCCCCCCccccCCCce-----------------------------EEEECCCCcEEEEeCCCCEEEEEEE
Confidence 32 22333221 1 144 7999999996666667889999999
Q ss_pred C-CCceEE--EeecC-CCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC-Cce--EEEEecCC------CceEEEEEcc
Q 011924 335 M-TGKTIA--SLCGH-LDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNL-SES--VAVLKGNL------GAIRSIRYTS 400 (475)
Q Consensus 335 ~-~~~~~~--~l~~h-~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~-~~~--~~~~~~~~------~~v~~l~~sp 400 (475)
. +++... .+..+ ...+..++|+|+|++++++ ..++.|.+|++... ++. +..+.... ..+..++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 554332 22322 2367889999999966664 56889999998641 322 22333222 3588999999
Q ss_pred CCCEEE-EEcCCCeEEEEECCC-C--eeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 401 DGRYMA-TAEPADFVHVYDVKS-G--YEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 401 dg~~la-~~~~dg~i~iwd~~~-~--~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+|++|+ +...++.|.+|++.. + ..+..+..+...+.+++|+|||++|+++..+..
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 999885 455689999999872 2 444455555667899999999999999887643
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=195.04 Aligned_cols=258 Identities=11% Similarity=-0.035 Sum_probs=191.4
Q ss_pred ceeEEEEEE--cCcEEEEEec-CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC---CCeEEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---DCGVRDF 262 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~---dg~v~iw 262 (475)
..+|.++++ +|+.|++++. +|++.+|++.... . .+++..+...+..+.| +|+ + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-~--~~lt~~~~~~~~~~~~--spd-~-~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-T--VKLNREPINSVLDPHY--GVG-R-VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-E--EECCSSCCSEECEECT--TCS-E-EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-c--EeeecccccccccccC--CCC-e-EEEEeccCCCCcceEEE
Confidence 447888877 9999998887 9999999985432 2 2444444467888888 998 4 4666654 4555665
Q ss_pred ECCC---Ceeeeeee---ccccEEeccCCceEE-------EEEEeecccceEEEEee-eeeeEEECCCCcEEEEEeCC--
Q 011924 263 DMGK---YQLSKHFR---FPWPVNVSSSYCIIL-------LCRLLNFMTEKVIICLL-CLQHSSQSPDGKLLIIVGDN-- 326 (475)
Q Consensus 263 d~~~---~~~~~~~~---~~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~d-- 326 (475)
.+.. +... .+. ......+++++..++ ...+||..+++...... ...+++|||||++|++++.+
T Consensus 94 ~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp EEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEET
T ss_pred EEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCC
Confidence 4432 2222 221 222345777775442 24599998876543322 22688999999999988766
Q ss_pred --CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCceEEEEecCCCceEEEE-----
Q 011924 327 --PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSESVAVLKGNLGAIRSIR----- 397 (475)
Q Consensus 327 --g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~----- 397 (475)
+.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ +|++||+.. ++.. .+..+...+..++
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHCCSEEE
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhhhcccc
Confidence 78999999888765 6788889999999999999999888888 899999976 5555 6677776666677
Q ss_pred ---EccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 398 ---YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 398 ---~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
|+|||+++++++.++.++||++ |+... ...+.+.+++|+ +|+.+++++.+.+-..+..+.
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999999999999999999999 65544 345778999999 999999988887766665554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-19 Score=171.79 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=176.0
Q ss_pred eEEEEEE--cCcEEEEEec-------CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 191 QVSTLAV--KDKLLVAGGF-------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
.+..+++ ++++|++++. ++.|.+||..+.+....... ......+++ +|+|+.+++++..++.|.+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~--s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATI--NNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEE--ETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEE--CCCCCEEEEEecCCCEEEE
Confidence 3556666 7777777763 67899999987665432221 223567788 9999986777777899999
Q ss_pred EECCCCeeeeeeecccc----------EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcE
Q 011924 262 FDMGKYQLSKHFRFPWP----------VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDG 329 (475)
Q Consensus 262 wd~~~~~~~~~~~~~~~----------v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i 329 (475)
||+.+++.+..+..... +. +++|+|+|+++++++ .++.|
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPR-----------------------------ELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEE-----------------------------EEEEETTTTEEEEEEESSSCEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCc-----------------------------eEEECCCCCEEEEEecCCCceE
Confidence 99999988877764221 34 889999999887776 47889
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec----CCCceEEEEEccCCCEE
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG----NLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~l~~spdg~~l 405 (475)
.+||+.+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+ ++.+..+.. +...+..++|+|+|++|
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred EEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 9999999999988876666788999999999999999999999999976 666666654 34567889999999987
Q ss_pred EEEcC-CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 406 ATAEP-ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 406 a~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
++++. ++.|.+||+.+++.+..+.... ..+++|+|+|++|+++..
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEEC
Confidence 77665 4899999999998777666433 367999999998887764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=199.60 Aligned_cols=290 Identities=10% Similarity=0.010 Sum_probs=187.1
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecC--
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ-- 208 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~d-- 208 (475)
...+.|+++...++...++.+++|+..+++...++..... ....|.+++| +|++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~---------------~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKI---------------ESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT---------------TTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccc---------------cccccceEEECCCCCEEEEEecCcc
Confidence 3556677777766655678999999988877665532110 0013556666 99999998764
Q ss_pred -------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec-cccEE
Q 011924 209 -------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-PWPVN 280 (475)
Q Consensus 209 -------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~v~ 280 (475)
+.|.+|++...... .......+...+..++| ||+|+. |+.++. +.|++|++.+++....... ...+.
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~--SPdG~~-la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGW--GPKGQQ-LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCB--CSSTTC-EEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred ceeecceeeEEEEECCCCceE-eccCCccccccccccEE--CCCCCE-EEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence 78999999876542 11222334445788888 999997 666654 7999999988876654432 22220
Q ss_pred eccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC---------------------------------
Q 011924 281 VSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP--------------------------------- 327 (475)
Q Consensus 281 ~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg--------------------------------- 327 (475)
+. .+.-|-.... ....+.+++|||||+.|++++.++
T Consensus 159 ~~-------g~~~~v~~ee----~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 227 (723)
T 1xfd_A 159 YN-------GLSDWLYEEE----ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (723)
T ss_dssp EE-------EECCHHHHHT----TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred EC-------cccceeEEEE----eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence 00 0000000000 000001677888888777776432
Q ss_pred -cEEEEECCCCceEEEeecC------CCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCCceEEEEec-CCCce--
Q 011924 328 -DGLLVDSMTGKTIASLCGH------LDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVLKG-NLGAI-- 393 (475)
Q Consensus 328 -~i~iwd~~~~~~~~~l~~h------~~~v~~~~~sp~g~~l~t~s~----dg~v~iwd~~~~~~~~~~~~~-~~~~v-- 393 (475)
.|++||+.+++....+..+ ...+.+++|+|||+++++.+. +..|.+||+.+ ++....+.. +.+.+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~ 306 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHR 306 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEec
Confidence 7999999988866667654 567899999999998877653 35799999976 565555443 33333
Q ss_pred --EEEEEccCCCEEEEE--cCCC------eEEEEE-CCCCe--eEEEEeccCCCeEE-EEEcCCCCeEEEEEecC
Q 011924 394 --RSIRYTSDGRYMATA--EPAD------FVHVYD-VKSGY--EKEQEIDFFGEISG-ISFSPDTESLFIGVWDR 454 (475)
Q Consensus 394 --~~l~~spdg~~la~~--~~dg------~i~iwd-~~~~~--~~~~~~~~~~~i~~-l~fspdg~~l~~~~~D~ 454 (475)
..++|+|||+.|+.+ ..++ .|.+|| ..++. +...+......+.. ++|||||+.|+..+.+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence 378999999977754 4566 577777 34443 14444443445554 69999999998877764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-19 Score=171.98 Aligned_cols=218 Identities=10% Similarity=-0.015 Sum_probs=161.7
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee-eeeeecc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-SKHFRFP 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~ 276 (475)
.+..+++++.++.|.+||+.+.+... ....+.... .++| +|+|+.+++++..++.|.+||+.+++. ...+...
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILN---QITLGYDFV-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEE---EEECCCCEE-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred CCEEEEEecCCCeEEEEeCcccceee---eEEccCCcc-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 34457788899999999998766542 222334455 7888 999997666666689999999998887 5555533
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeee-EEECCCCcEEEEEeCCC---cEEEEECCCCceEEEeecCCCCeEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH-SSQSPDGKLLIIVGDNP---DGLLVDSMTGKTIASLCGHLDFSFA 352 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~-~~~sp~g~~l~~~~~dg---~i~iwd~~~~~~~~~l~~h~~~v~~ 352 (475)
.... . ++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+
T Consensus 83 ~~~~-----------------------------~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 132 (331)
T 3u4y_A 83 QSSM-----------------------------ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG 132 (331)
T ss_dssp SSCC-----------------------------CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred CCCc-----------------------------cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence 3333 4 89999999999555443 8999999999988887754 45689
Q ss_pred EEEecCCCEEEEE-eCCCe-EEEEECCCCCceE---EEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCee--
Q 011924 353 SAWHPNGVTFATG-NQDKT-CRIWDLRNLSESV---AVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYE-- 424 (475)
Q Consensus 353 ~~~sp~g~~l~t~-s~dg~-v~iwd~~~~~~~~---~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~-- 424 (475)
++|+|+|++++++ ..++. |.+|++...+... .........+..++|+|+|++|+++ ..++.|++||+.+++.
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9999999866555 55577 9999997533321 1122334567899999999966554 5688999999998876
Q ss_pred -EEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 425 -KEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 425 -~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
+..+. ....+.+++|+|+|++|+++..
T Consensus 213 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 213 LLNAVG-TNNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EEEEEE-CSSCCCCEEECTTSSEEEEECS
T ss_pred eeeecc-CCCCCceEEECCCCCEEEEEEc
Confidence 55554 4467889999999998887643
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=193.45 Aligned_cols=287 Identities=14% Similarity=0.147 Sum_probs=185.7
Q ss_pred eeEEecCCCeEEEecCCeEEEEecCCCCc--eEEEeccCC---CCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec
Q 011924 135 NLVWATSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGH---VAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF 207 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~v~~w~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~ 207 (475)
.+.|. +. .+++..+..| +|+..+++. ..++..... +..... .+......|.+++| + +.++.+ .
T Consensus 30 ~~~w~-g~-~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~v~~~~~spd-~~~~~~-~ 99 (706)
T 2z3z_A 30 GLQWM-GD-NYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCK-----FQTTDAFPSFRTLDAGR-GLVVLF-T 99 (706)
T ss_dssp TCEEE-TT-EEEEEETTEE-EEEC-------CEEEEHHHHHTTC----------------CCCEEEEETTT-TEEEEE-E
T ss_pred CCcCc-CC-eEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhc-----cccccccCceeEEECCC-CeEEEE-E
Confidence 34566 44 4444444448 999999887 666554311 000000 01112246888888 5 565555 4
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-----Ceeeeeeecc-ccEEe
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQLSKHFRFP-WPVNV 281 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~-~~v~~ 281 (475)
++.|++|++...... . ...+...+..++| ||+|+. |+++ .++.|++|++.+ ++........ ..+..
T Consensus 100 ~~~i~~~d~~~~~~~---~-l~~~~~~~~~~~~--SpdG~~-la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 100 QGGLVGFDMLARKVT---Y-LFDTNEETASLDF--SPVGDR-VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp TTEEEEEETTTTEEE---E-EECCTTCCTTCEE--CTTSSE-EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred CCEEEEEECCCCceE---E-ccCCcccccCCcC--CCCCCE-EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 699999999765332 2 2334556788888 999997 5554 679999999988 7665443322 21200
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe---------------------------------CCCc
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG---------------------------------DNPD 328 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---------------------------------~dg~ 328 (475)
... +. .. ....+.+++|||||++|++++ .+..
T Consensus 172 g~~--------~~---~e----e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 172 GQA--------VH---QR----EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp SSC--------CG---GG----CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred ccc--------hh---hh----hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 000 00 00 000011889999999999987 4467
Q ss_pred EEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCceEEEEe-c-CCC---ceEEE
Q 011924 329 GLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESVAVLK-G-NLG---AIRSI 396 (475)
Q Consensus 329 i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~~~~~~~-~-~~~---~v~~l 396 (475)
|++||+.+++...... .|...+.+++|+|+|++|++++.++ +|.+||+.+ ++....+. . +.. .+..+
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCc
Confidence 9999999887654442 4667899999999999999988775 899999976 42333332 2 221 24678
Q ss_pred EEcc--CCCEEEEEcCCCeEEEEECC-CCeeEEEEeccCCCeEE-EEEcCCCCeEEEEEecCC
Q 011924 397 RYTS--DGRYMATAEPADFVHVYDVK-SGYEKEQEIDFFGEISG-ISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 397 ~~sp--dg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~-l~fspdg~~l~~~~~D~~ 455 (475)
+|+| +|++|++++.++.++||.+. ++..+..+..+...+.. ++|+|+|+.|++++.+..
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 9999 99999999999999999875 56677777777777877 899999999988776643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-21 Score=190.16 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=146.3
Q ss_pred CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee----------------eeeeeccccEEeccCCceEEEEEEeec
Q 011924 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL----------------SKHFRFPWPVNVSSSYCIILLCRLLNF 296 (475)
Q Consensus 233 ~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~----------------~~~~~~~~~v~~s~~~~~l~~~~v~d~ 296 (475)
..++.+++ ++.+.. +++++.++ +++|+...... ...+.+...+.
T Consensus 37 ~~~n~lav--s~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------- 96 (434)
T 2oit_A 37 ERSSLLAV--SNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH---------------- 96 (434)
T ss_dssp SCCBCEEE--ETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE----------------
T ss_pred CCccEEEE--ecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc----------------
Confidence 35788888 888876 77777777 89987532100 01122333455
Q ss_pred ccceEEEEeeeeeeEEECCCCcEEE----EEeCCCcEEEEECCCC--------ce---EEEeecCCCCeEEEEEecC-CC
Q 011924 297 MTEKVIICLLCLQHSSQSPDGKLLI----IVGDNPDGLLVDSMTG--------KT---IASLCGHLDFSFASAWHPN-GV 360 (475)
Q Consensus 297 ~~~~~~~~~~~i~~~~~sp~g~~l~----~~~~dg~i~iwd~~~~--------~~---~~~l~~h~~~v~~~~~sp~-g~ 360 (475)
+++|+|+|++|+ +++.|+.|+|||+.++ ++ +..+.+|...|.+++|+|+ ++
T Consensus 97 -------------~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 97 -------------HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp -------------EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred -------------EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence 999999999999 6778999999998754 22 4556779999999999997 89
Q ss_pred EEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC-------C
Q 011924 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-------G 433 (475)
Q Consensus 361 ~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-------~ 433 (475)
+|++++.||+|++||+++ +..+....+|...|++++|+|+|++|++|+.||.|++||++ +.....+..+. .
T Consensus 164 ~las~s~Dg~v~iwD~~~-~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTE-TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp EEEEEETTSCEEEEEESS-SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred EEEEEECCCeEEEEEcCC-CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCce
Confidence 999999999999999987 45566666788899999999999999999999999999998 55555554432 3
Q ss_pred CeEEEEEcCCCCeEEEE-EecCCc
Q 011924 434 EISGISFSPDTESLFIG-VWDRTY 456 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~-~~D~~~ 456 (475)
.|.+++|++++.++++. ..|+.+
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCS
T ss_pred eEEEEEEecCceEEEEEccCCCcc
Confidence 78999999998877653 455444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=167.96 Aligned_cols=264 Identities=11% Similarity=0.114 Sum_probs=173.9
Q ss_pred ccceeEEecCCCeEEEecC--CeEEEEecC--CCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 132 QLRNLVWATSKHDVYLMSH--FSVIHWSSL--TSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~--~~v~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
....+.|+++...|++... +.+.+|+.. +++...+..+..+ ..+..+++ ++++|+++
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~ 101 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-----------------GSLTHISTDHQGQFVFVG 101 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-----------------SCCSEEEECTTSSEEEEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-----------------CCCcEEEEcCCCCEEEEE
Confidence 3456678888887888654 789999876 4444333222210 13456666 78877666
Q ss_pred e-cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeee----ee--ccc
Q 011924 206 G-FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKH----FR--FPW 277 (475)
Q Consensus 206 ~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~----~~--~~~ 277 (475)
+ .++.|.+|++............. ....+.+++| +|+|+.+++++..++.|++|++.+ ++.... +. ...
T Consensus 102 ~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 102 SYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp ETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred ecCCCeEEEEECCCCcccccccccc-CCCCceEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 5 48999999996222222223333 3345788888 999997555554899999999987 554322 12 223
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECC--CCce--EEEeec----C--
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSM--TGKT--IASLCG----H-- 346 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~--~~~~--~~~l~~----h-- 346 (475)
.+. +++|+|+|+++++++ .++.+.+|++. +++. ...+.. +
T Consensus 179 ~~~-----------------------------~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 179 GPR-----------------------------HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp CEE-----------------------------EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred Ccc-----------------------------eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 455 899999999776655 78999999995 3443 223321 1
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC---CceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEE--EC
Q 011924 347 LDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNL---SESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVY--DV 419 (475)
Q Consensus 347 ~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iw--d~ 419 (475)
...+.+++|+|+|++|+++. .++.|.+||+... .+.+..+..+.. +..++|+|+|++|++++ .++.|.+| |.
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 23567899999998887554 7899999999731 234444554444 88999999999888887 57999999 55
Q ss_pred CCCeeEEE-EeccCCCeEEEEEcCCCC
Q 011924 420 KSGYEKEQ-EIDFFGEISGISFSPDTE 445 (475)
Q Consensus 420 ~~~~~~~~-~~~~~~~i~~l~fspdg~ 445 (475)
.++..... .........+++|.|+.+
T Consensus 309 ~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 309 EQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp TTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred CCceeeEccccccCCCCeeEEEEcccC
Confidence 56643221 112235677888887644
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-19 Score=196.19 Aligned_cols=223 Identities=15% Similarity=0.081 Sum_probs=179.0
Q ss_pred EEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecC-----------CCCceeEEEEEeC-CCCCeEEEEEeCCCeE
Q 011924 192 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-----------DNAITNAVEIYGS-PSGAVHFTASNNDCGV 259 (475)
Q Consensus 192 v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-----------~~~~v~~l~~~~s-~~g~~~l~s~s~dg~v 259 (475)
..+++.+|+.|+++ .++.|++|++.. ... . .... +...+..++| + |+|+. +++++ ++.|
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l--~-~l~~~~~~~~~~~~~~~~~v~~~~~--S~pdG~~-la~~~-~~~i 319 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDT-EKI--E-KIEIGDLESPEDRIISIPSKFAEDF--SPLDGDL-IAFVS-RGQA 319 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTT-CCE--E-ECCCCCCCBCCSEEEECGGGGEEEE--EECGGGC-EEEEE-TTEE
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCc-eEe--e-eeccCcccccccccccccccceeee--cCCCCCE-EEEEE-cCEE
Confidence 34666699988887 589999999843 222 1 2222 2346888999 9 99997 56555 8899
Q ss_pred EEEECCCCeeeeeeeccc-cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE-EEECCCC
Q 011924 260 RDFDMGKYQLSKHFRFPW-PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL-LVDSMTG 337 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~-~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~-iwd~~~~ 337 (475)
.+|++..+.......+.. .+. +++|+ +|+.|++++.+..+. +|++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 320 FIQDVSGTYVLKVPEPLRIRYV-----------------------------RRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp EEECTTSSBEEECSCCSCEEEE-----------------------------EECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEcCCCCceEEccCCCcceEE-----------------------------eeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 999998877554333444 566 89999 999999999888888 9998877
Q ss_pred ceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC-----
Q 011924 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD----- 412 (475)
Q Consensus 338 ~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg----- 412 (475)
+.. .+.+|...+.+++|+|+|++|++++.++.|++||+.+ ++....+.+|.+.+.+++|||||++|++++.++
T Consensus 370 ~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 370 KAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp CEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred Cce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 654 4557888999999999999999999999999999976 677777768888899999999999999887654
Q ss_pred -----eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 413 -----FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 413 -----~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.|++||+.++. +..+..|...+..++|+|||++|++++.++..
T Consensus 448 ~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp SCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred CCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCC
Confidence 89999999886 66677788889999999999999998876543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-19 Score=171.19 Aligned_cols=216 Identities=11% Similarity=0.101 Sum_probs=161.5
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
++.++++++.+++|.+||+.+..... .+.......+..++| +|+|+.+++++..++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEE--EEECSSCCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEE--EEecCCCCCCceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 66788999999999999998655432 222222224677888 99998767777788999999999988877665322
Q ss_pred -------cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC------------CcEEEEECCCCc
Q 011924 278 -------PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------------PDGLLVDSMTGK 338 (475)
Q Consensus 278 -------~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------------g~i~iwd~~~~~ 338 (475)
.+. +++|+|+|++|++++.+ +.|.+||+.+++
T Consensus 86 ~~~~~~~~~~-----------------------------~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 86 VPGEVGRSMY-----------------------------SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp STTEEEECSS-----------------------------CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred cccccccccc-----------------------------ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 134 88999999999998865 899999998754
Q ss_pred ---eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC-------------------------
Q 011924 339 ---TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL------------------------- 390 (475)
Q Consensus 339 ---~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~------------------------- 390 (475)
.+..+. +...+.+++|+|+|+ +++++. .|.+||+.+ ++.+..+..+.
T Consensus 137 ~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 137 EAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred ccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 334444 344688999999999 555544 499999976 55555543221
Q ss_pred -------------------------------------------CceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 391 -------------------------------------------GAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 391 -------------------------------------------~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
..+..++|+| +|++|+++ ++.|.+||+.+++.+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 1345678889 99999988 8899999999988776
Q ss_pred EEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 427 QEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 427 ~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.+. ....+.+++|+|+|++|++++.++
T Consensus 290 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 290 AAN-LDHTYYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp EEE-CSSCCCEEEECSSSSCEEEESBSS
T ss_pred EEc-CCCCccceEECCCCCEEEEecCCC
Confidence 655 345678999999999999875554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=197.01 Aligned_cols=220 Identities=12% Similarity=0.080 Sum_probs=164.0
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC---ceeEEEEEeCCCCCeEEEEEeCC---------C
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA---ITNAVEIYGSPSGAVHFTASNND---------C 257 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~l~~~~s~~g~~~l~s~s~d---------g 257 (475)
+.+++| +|+++++ +.+|+|++|++.+.... .+...+.. .+..++| ||+|+. |++++.+ +
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---~~~~~~~~~~~~v~~~~~--SpDg~~-l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---VLIEGKKIESLRAIRYEI--SPDREY-ALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEE--CTTSSE-EEEEESCCCCSSSCCCS
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---EEeccccccccccceEEE--CCCCCE-EEEEecCccceeeccee
Confidence 445666 7786665 78999999999876554 34444443 3889999 999997 6666554 7
Q ss_pred eEEEEECCCCeeeeeee-c---cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 258 GVRDFDMGKYQLSKHFR-F---PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 258 ~v~iwd~~~~~~~~~~~-~---~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
.|++||+.+++. ..+. . ...+. +++|||+|+.|++++. +.|++||
T Consensus 92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~-----------------------------~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLDPPEVSNAKLQ-----------------------------YAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp EEEEEESSSCCC-EECCCTTCCSCCCS-----------------------------BCCBCSSTTCEEEEET-TEEEEES
T ss_pred eEEEEECCCCce-EeccCCcccccccc-----------------------------ccEECCCCCEEEEEEC-CeEEEEE
Confidence 888999998876 2232 1 22255 7899999999999876 7899999
Q ss_pred CCCCceEEEeecCCCCe------------------EEEEEecCCCEEEEEeCCC--------------------------
Q 011924 334 SMTGKTIASLCGHLDFS------------------FASAWHPNGVTFATGNQDK-------------------------- 369 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v------------------~~~~~sp~g~~l~t~s~dg-------------------------- 369 (475)
+.+++.......+...+ .+++|+|||++|++++.++
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99888776665444333 7899999999999987653
Q ss_pred --------eEEEEECCCCCceEEEEecC------CCceEEEEEccCCCEEEEEcC----CCeEEEEECCCCeeEEEEec-
Q 011924 370 --------TCRIWDLRNLSESVAVLKGN------LGAIRSIRYTSDGRYMATAEP----ADFVHVYDVKSGYEKEQEID- 430 (475)
Q Consensus 370 --------~v~iwd~~~~~~~~~~~~~~------~~~v~~l~~spdg~~la~~~~----dg~i~iwd~~~~~~~~~~~~- 430 (475)
+|++||+.. ++....+..+ ...+..++|||||++|++... +..|++||+.++.....+..
T Consensus 221 ~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp TTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 799999976 5544555543 567899999999998877643 35799999999876655543
Q ss_pred cCCCe----EEEEEcCCCCeEEEE
Q 011924 431 FFGEI----SGISFSPDTESLFIG 450 (475)
Q Consensus 431 ~~~~i----~~l~fspdg~~l~~~ 450 (475)
+.+.+ ..++|||||+.|+..
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEE
Confidence 33444 388999999998875
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-18 Score=165.40 Aligned_cols=261 Identities=13% Similarity=0.116 Sum_probs=173.2
Q ss_pred cceeEEecCCCeEEEecC-----CeEEEEecCC--CCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEE
Q 011924 133 LRNLVWATSKHDVYLMSH-----FSVIHWSSLT--SSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAG 205 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~-----~~v~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg 205 (475)
.+.+.++++...||+.+. +.+..|.... ++...+..... .......+++++++|+++
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~----------------~~~~p~~~~~dg~~l~~~ 115 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT----------------MGADPCYLTTNGKNIVTA 115 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC----------------SSSCEEEEEECSSEEEEE
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc----------------CCCCcEEEEECCCEEEEE
Confidence 455678888888888766 5888887544 33333322110 112345566688877776
Q ss_pred e-cCceEEEEeCCCCCceEEE--eee-cC--------CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-----
Q 011924 206 G-FQGELICKHLDRPGVSFCS--RTT-YD--------DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ----- 268 (475)
Q Consensus 206 ~-~dg~i~vw~~~~~~~~~~~--~~~-~~--------~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~----- 268 (475)
+ .+|.|.+|++...+..... ... .+ +...+.+++| +|+|+.+++++..++.|++|++....
T Consensus 116 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 116 NYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp ETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred ECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 6 5789999999754422100 011 11 1223467888 99999867777678999999987533
Q ss_pred --ee-------eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCc
Q 011924 269 --LS-------KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK 338 (475)
Q Consensus 269 --~~-------~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~ 338 (475)
+. .......... +++|+|+|+++++++ .++.|.+|++.+++
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~-----------------------------~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPR-----------------------------HLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEE-----------------------------EEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred cceeecccccceecCCCCCCe-----------------------------EEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 11 1111233445 899999999888777 68999999998775
Q ss_pred e--EEEee---cCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECCC-CCc--eEEEEecCCCceEEEEEccCCCEEEEE
Q 011924 339 T--IASLC---GHLDFSFASAWHPNGVTFATGNQD--KTCRIWDLRN-LSE--SVAVLKGNLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 339 ~--~~~l~---~h~~~v~~~~~sp~g~~l~t~s~d--g~v~iwd~~~-~~~--~~~~~~~~~~~v~~l~~spdg~~la~~ 408 (475)
. +..+. .+...+.+++|+|+|++|++++.+ ++|.+|++.. .+. .+..+.. ...++.++|+|+|++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence 4 33332 233457899999999999777765 8999999962 233 3444444 4567899999999998888
Q ss_pred c-CCCeEEEE--ECCCCeeEEEEe-ccCCCeEEEEEc
Q 011924 409 E-PADFVHVY--DVKSGYEKEQEI-DFFGEISGISFS 441 (475)
Q Consensus 409 ~-~dg~i~iw--d~~~~~~~~~~~-~~~~~i~~l~fs 441 (475)
+ .++.|.+| |..+++...... .+...+.|+.|.
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7 56899996 445665443321 234678899886
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=191.86 Aligned_cols=263 Identities=11% Similarity=0.042 Sum_probs=199.7
Q ss_pred ccceeEEe-cCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCc
Q 011924 132 QLRNLVWA-TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQG 209 (475)
Q Consensus 132 ~lr~l~~~-~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg 209 (475)
....+.|+ ++...|++.....+..|+..++.... +.++ ....+..++| +++.|++++.++
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~---~~~~---------------~~~~~~~~~~sdg~~l~~~s~~~ 358 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK---VPEP---------------LRIRYVRRGGDTKVAFIHGTREG 358 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE---CSCC---------------SCEEEEEECSSSEEEEEEEETTE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE---ccCC---------------CcceEEeeeEcCCCeEEEEECCC
Confidence 35667788 88888888888899999876554322 1110 1125666666 678888888888
Q ss_pred eEE-EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCce
Q 011924 210 ELI-CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~-vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~ 287 (475)
.+. +|++...... .+. .+...+..++| +|+|+. |++++.++.|++||+.+++...... +...+.
T Consensus 359 ~l~~~~d~~~~~~~---~l~-~~~~~~~~~~~--SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~------- 424 (1045)
T 1k32_A 359 DFLGIYDYRTGKAE---KFE-ENLGNVFAMGV--DRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMIT------- 424 (1045)
T ss_dssp EEEEEEETTTCCEE---ECC-CCCCSEEEEEE--CTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCC-------
T ss_pred ceEEEEECCCCCce---Eec-CCccceeeeEE--CCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCcc-------
Confidence 888 8998764432 333 67778899999 999997 7888899999999999988877763 666777
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC----------cEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP----------DGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg----------~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
+++|||+|++|++++.++ .|++||+.+++ +..+..|...+.+++|+|
T Consensus 425 ----------------------~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 425 ----------------------DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp ----------------------CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT
T ss_pred ----------------------ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC
Confidence 899999999999887644 89999999887 677888888899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC------------------------------------------ceEEEEecCCCceEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLS------------------------------------------ESVAVLKGNLGAIRS 395 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~------------------------------------------~~~~~~~~~~~~v~~ 395 (475)
+|++|++++.++..++|+..... ..+..+..+.+.+..
T Consensus 482 dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~ 561 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 561 (1045)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE
T ss_pred CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhh
Confidence 99999999988777777643210 112333445577889
Q ss_pred EEEccCCCEEEE-------------EcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 396 IRYTSDGRYMAT-------------AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 396 l~~spdg~~la~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
++++|+|+++++ ......|.+||+.++.... +. ..+..++|||||++|++++.|
T Consensus 562 ~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~ 628 (1045)
T 1k32_A 562 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD 628 (1045)
T ss_dssp EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT
T ss_pred eEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC
Confidence 999999987775 1224578999998886432 22 568899999999999998876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=162.81 Aligned_cols=235 Identities=15% Similarity=0.118 Sum_probs=152.4
Q ss_pred EEEE--cCcEEEEEecC----ceEEEEeCCCC-CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 194 TLAV--KDKLLVAGGFQ----GELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 194 ~l~~--~~~~lvsg~~d----g~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.+++ ++++|++++.+ |.|.+|+++.. +..........+......+++ +++.++++...++.|.+|++..
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCT
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCC
Confidence 4555 88889888875 89999998765 322222222323334455554 7777566666789999999975
Q ss_pred Ceeeeee----eccc--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCc-
Q 011924 267 YQLSKHF----RFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK- 338 (475)
Q Consensus 267 ~~~~~~~----~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~- 338 (475)
...+... .+.. +.. . . .....+.+++|+|+|+++++++ .++.|.+|++....
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~---~-------------~----~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDK---E-------------R----QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCT---T-------------T----CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred CCcCcccceeEEccCCCCCc---c-------------c----cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 4322211 1111 000 0 0 0000011789999999776665 47899999887433
Q ss_pred ------eE------EEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCce--EEEEec---CCCceEEEEEcc
Q 011924 339 ------TI------ASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSES--VAVLKG---NLGAIRSIRYTS 400 (475)
Q Consensus 339 ------~~------~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~--~~~~~~---~~~~v~~l~~sp 400 (475)
.. .....+...+..++|+|+|+++++++ .+++|.+||+.. +.. +..+.. +...+..++|+|
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECC
Confidence 11 11223455678999999999888877 589999999974 432 222322 224567999999
Q ss_pred CCCEEEEEcCC--CeEEEEECC--CCe--eEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 401 DGRYMATAEPA--DFVHVYDVK--SGY--EKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 401 dg~~la~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
||++|+++..+ +.|.+|++. ++. .+..+.. ...+.+++|+|||++|+++..+.
T Consensus 269 dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 269 DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 99998776654 899999985 444 3333333 45788999999999999988554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=159.59 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=188.0
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFC 224 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~ 224 (475)
..++.|..|+..+++....+...+.. ..+..+++ +++.+ +++..++.|.+|++.+.+....
T Consensus 8 ~~~~~v~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 71 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKVITIADAG----------------PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCT----------------TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEEcCCCC----------------CCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee
Confidence 35688999998887665544432100 01234555 77655 5666789999999987664422
Q ss_pred EeeecCC----CCceeEEEEEeCCCCCeEEEEEe------------CCCeEEEEECCCCeeeeeee---ccccEEeccCC
Q 011924 225 SRTTYDD----NAITNAVEIYGSPSGAVHFTASN------------NDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSY 285 (475)
Q Consensus 225 ~~~~~~~----~~~v~~l~~~~s~~g~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~ 285 (475)
+...+ ...+..++| +|+|+. +++++ .++.|.+||+.+++.+..+. .+..+.|+|++
T Consensus 72 --~~~~~~~~~~~~~~~~~~--s~dg~~-l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 146 (337)
T 1pby_B 72 --IDLSTPEERVKSLFGAAL--SPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146 (337)
T ss_dssp --EECCBTTEEEECTTCEEE--CTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS
T ss_pred --EEcCCcccccccccceEE--CCCCCE-EEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC
Confidence 22121 124567888 999987 55543 57999999999988877766 34567799999
Q ss_pred ceEE----EEEEeecccceEEEEeee---eeeEEECCCCcEEEEEeCCC------------------------cEEEEEC
Q 011924 286 CIIL----LCRLLNFMTEKVIICLLC---LQHSSQSPDGKLLIIVGDNP------------------------DGLLVDS 334 (475)
Q Consensus 286 ~~l~----~~~v~d~~~~~~~~~~~~---i~~~~~sp~g~~l~~~~~dg------------------------~i~iwd~ 334 (475)
..++ .+.+||..+++....... ...+.|+|+|+.+++++..+ .|.+||+
T Consensus 147 ~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp SCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred CEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 8775 488999998887654431 23457899988776554332 4689999
Q ss_pred CCCceE-EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCe
Q 011924 335 MTGKTI-ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 335 ~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~ 413 (475)
.+++.. ..+..+...+.+++|+|+|++++++ ++.|.+||+.+ ++.+..+... ..+.+++|+|+|++|++++.++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK-NASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-TEEEEEEECS-SCCCEEEECTTSCEEEEESBSSE
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC-CcCcceecCC-CceeeEEECCCCCEEEEEcCCCc
Confidence 988764 2344566778899999999999988 68999999976 6666666643 46789999999999999999999
Q ss_pred EEEEECCCCeeEEEEeccC
Q 011924 414 VHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~ 432 (475)
|++||+.+++.+..+..+.
T Consensus 303 i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 303 LAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEEETTTCCEEEEEECGG
T ss_pred EEEEECcCCcEEEEEEcCC
Confidence 9999999998887776543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-17 Score=156.18 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=164.3
Q ss_pred ccceeEEecCCCeEEEecC----CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 132 QLRNLVWATSKHDVYLMSH----FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 132 ~lr~l~~~~~~~~v~~~~~----~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
....+.++++.. ||.++. +.|..|+..++....+..+.. ....+..+++ ++++|+++
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~----------------~~~~p~~~a~spdg~~l~~~ 103 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA----------------PGTPPAYVAVDEARQLVYSA 103 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE----------------ESCCCSEEEEETTTTEEEEE
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec----------------CCCCCEEEEECCCCCEEEEE
Confidence 345566777766 777653 689999986655433322111 1112345555 88888887
Q ss_pred e-cCceEEEEeCCCCCceEEEeeecC---------CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC-CCeeeee--
Q 011924 206 G-FQGELICKHLDRPGVSFCSRTTYD---------DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKH-- 272 (475)
Q Consensus 206 ~-~dg~i~vw~~~~~~~~~~~~~~~~---------~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~-~~~~~~~-- 272 (475)
+ .++.|.+|++...+.......... ....+.+++| +|+|+ ++++...++.|++|++. +++....
T Consensus 104 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 104 NYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL--TPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE--CTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred eCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE--CCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee
Confidence 7 779999999975443322222211 1224677888 99999 68888888999999998 4543322
Q ss_pred ee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCC--Cce--EEEeec
Q 011924 273 FR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMT--GKT--IASLCG 345 (475)
Q Consensus 273 ~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~--~~~--~~~l~~ 345 (475)
+. ...... .++|+|+|++++++ ..++.+.+|++.. ++. +..+..
T Consensus 181 ~~~~~g~~p~-----------------------------~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 181 LTMEAGFGPR-----------------------------HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp EECCTTCCEE-----------------------------EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEcCCCCCCc-----------------------------eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 12 122344 88999999966664 5678999999874 543 233333
Q ss_pred CC------CCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCC--ceEEEEecCCCceEEEEEccCCCEEEEEcCC-CeEE
Q 011924 346 HL------DFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLS--ESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-DFVH 415 (475)
Q Consensus 346 h~------~~v~~~~~sp~g~~l~-t~s~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g~i~ 415 (475)
.. ..+..++|+|+|++|+ +...+++|.+|++...+ ..+..+..+...+..++|+|+|++|++++.+ +.|.
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 22 3588999999999874 55568999999996322 3455555555678899999999988888754 8999
Q ss_pred EE--ECCCCeeE
Q 011924 416 VY--DVKSGYEK 425 (475)
Q Consensus 416 iw--d~~~~~~~ 425 (475)
+| |..+|...
T Consensus 312 v~~~d~~tg~l~ 323 (347)
T 3hfq_A 312 LYARDLTSGKLS 323 (347)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEeCCCCeEE
Confidence 99 55566544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-17 Score=162.80 Aligned_cols=275 Identities=12% Similarity=0.061 Sum_probs=180.0
Q ss_pred ceeEEecCCCeEEEecC--C--eEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEE--EEEEcCcEEEEEec
Q 011924 134 RNLVWATSKHDVYLMSH--F--SVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVS--TLAVKDKLLVAGGF 207 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~--~--~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~l~~~~~~lvsg~~ 207 (475)
.+..|+++...|++.++ + .|..|+..+++...+....+ ..+. .++.+++.|+.++.
T Consensus 39 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~------------------~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG------------------DNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC------------------BCSSSCEECTTSSEEEEEET
T ss_pred cCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC------------------CCccceEEcCCCCEEEEEeC
Confidence 34568888887777654 3 48888887766544322110 1111 34448999999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEE---------------------EeCCCeEEEEECCC
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA---------------------SNNDCGVRDFDMGK 266 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s---------------------~s~dg~v~iwd~~~ 266 (475)
++.|++|++...... .+...+...+....+..+|++..++.. ...+..|.+||+.+
T Consensus 101 ~~~l~~~d~~~g~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 101 GRNLMRVDLATLEEN---VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TTEEEEEETTTCCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CCeEEEEECCCCcce---eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 999999999876544 233344555555555558999863322 12446788999988
Q ss_pred CeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCC------CcEEEEECCCCce
Q 011924 267 YQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDN------PDGLLVDSMTGKT 339 (475)
Q Consensus 267 ~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d------g~i~iwd~~~~~~ 339 (475)
++..........+. .++|+| +|+.|+.+... ..|.++|+..+..
T Consensus 178 g~~~~l~~~~~~~~-----------------------------~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 178 GESTVILQENQWLG-----------------------------HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp CCEEEEEEESSCEE-----------------------------EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred CceEEeecCCcccc-----------------------------ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 87665555666667 899999 99999887753 3788888765543
Q ss_pred EEEeecCC--CCeEEEEEecCCCEEEEEeC-C----CeEEEEECCCCCce--EEEEecCCC---ceEEEEEccCCCEEEE
Q 011924 340 IASLCGHL--DFSFASAWHPNGVTFATGNQ-D----KTCRIWDLRNLSES--VAVLKGNLG---AIRSIRYTSDGRYMAT 407 (475)
Q Consensus 340 ~~~l~~h~--~~v~~~~~sp~g~~l~t~s~-d----g~v~iwd~~~~~~~--~~~~~~~~~---~v~~l~~spdg~~la~ 407 (475)
..+..+. ..+..++|+|+|+.|+..+. + ..|.+||+.. ++. +..+.++.. ....++|+|||+.|+.
T Consensus 229 -~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 229 -RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp -EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred -EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 4454444 35788999999998866543 2 2499999976 442 222222100 0122379999998876
Q ss_pred E---------cCCCeEEEEECCCCeeEEEEeccCC-----------CeEEEEEcCCCCeEEEEEecCCcceEEE
Q 011924 408 A---------EPADFVHVYDVKSGYEKEQEIDFFG-----------EISGISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 408 ~---------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~~l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
. ..+..|++||+.++.. ..+..+.+ .+..++|||||++|+.++.......+..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp ----------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 4 4456899999998764 44555555 5788999999999998875433333433
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-17 Score=156.35 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=153.5
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
.++.|.+|+..+++....+...+. ..+..+++ +++++ +++..++.|.+|++.+.+...
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-- 79 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-- 79 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--
T ss_pred CCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE--
Confidence 568899999888766555443210 01234555 77755 556678999999998655432
Q ss_pred eeecCC-----CCceeEEEEEeCCCCCeEEEEEeC------------CCeEEEEECCCCee---eeeeeccccEEeccCC
Q 011924 226 RTTYDD-----NAITNAVEIYGSPSGAVHFTASNN------------DCGVRDFDMGKYQL---SKHFRFPWPVNVSSSY 285 (475)
Q Consensus 226 ~~~~~~-----~~~v~~l~~~~s~~g~~~l~s~s~------------dg~v~iwd~~~~~~---~~~~~~~~~v~~s~~~ 285 (475)
.....+ ...+..++| +|+|+. +++++. ++.|.+||+.+++. +..+..+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~----- 151 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAI--SPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY----- 151 (349)
T ss_dssp EEESCCSTTEEEECSSCEEE--CTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCC-----
T ss_pred EEEcccccccccccccceEE--CCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccc-----
Confidence 222122 223677888 999997 555544 48999999988443 34444444555
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC-------------------
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH------------------- 346 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h------------------- 346 (475)
+++|+|+|+ +++++ +.|.+||+.+++.+..+..+
T Consensus 152 ------------------------~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 152 ------------------------LMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 204 (349)
T ss_dssp ------------------------CEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred ------------------------ceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCC
Confidence 666777666 44332 23666776666655544322
Q ss_pred -------------------------------------------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEEC
Q 011924 347 -------------------------------------------------LDFSFASAWHP-NGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 347 -------------------------------------------------~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~ 376 (475)
...+.+++|+| ++++++++ ++.|.+||+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~ 282 (349)
T 1jmx_B 205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL 282 (349)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEET
T ss_pred CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEEC
Confidence 22456788889 99999988 889999999
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
.+ ++.+..+... ..+.+++|+|+|++|++++.++.|.+||+.+++.+..+...
T Consensus 283 ~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 283 KQ-RKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp TT-TEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred cc-CeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 76 6666666543 35779999999998888888999999999999887776543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=190.19 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=155.9
Q ss_pred EEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC---ceeEEEEEeCCCCCeEEEEEeC---------CCeE
Q 011924 194 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA---ITNAVEIYGSPSGAVHFTASNN---------DCGV 259 (475)
Q Consensus 194 ~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~l~~~~s~~g~~~l~s~s~---------dg~v 259 (475)
+++| ++.+++ .+.+|.|++|++...... .++..+.. .+..++| ||+|+. |++++. ++.|
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~--SpDg~~-la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSY---TILSNRTMKSVNASNYGL--SPDRQF-VYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEE---EEECHHHHHTTTCSEEEE--CTTSSE-EEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEE---EEEccccccccceeeEEE--CCCCCe-EEEEecCceeEEeecceEE
Confidence 3455 665544 456999999999876643 33333322 3788888 999997 555544 6899
Q ss_pred EEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 260 RDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
++||+.+++.+........+. +++|||||+.|+++. ++.|++|++.+++.
T Consensus 93 ~~~d~~~g~~~~~~~l~~~~~-----------------------------~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 93 YIYDLSNGEFVRGNELPRPIQ-----------------------------YLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EEEETTTTEECCSSCCCSSBC-----------------------------CEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred EEEECCCCccccceecCcccc-----------------------------cceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 999999988732122234456 889999999999985 67999999988876
Q ss_pred EEEe-ecCCCCe-----------------EEEEEecCCCEEEEEeCCC--------------------------------
Q 011924 340 IASL-CGHLDFS-----------------FASAWHPNGVTFATGNQDK-------------------------------- 369 (475)
Q Consensus 340 ~~~l-~~h~~~v-----------------~~~~~sp~g~~l~t~s~dg-------------------------------- 369 (475)
.... .++...+ .+++|+|||++||+++.|.
T Consensus 143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 5432 2333322 4899999999999988652
Q ss_pred --eEEEEECCCCCceE--EE------EecCCCceEEEEEccCCCEEEEEcCC----CeEEEEE----CCCCeeEEEE---
Q 011924 370 --TCRIWDLRNLSESV--AV------LKGNLGAIRSIRYTSDGRYMATAEPA----DFVHVYD----VKSGYEKEQE--- 428 (475)
Q Consensus 370 --~v~iwd~~~~~~~~--~~------~~~~~~~v~~l~~spdg~~la~~~~d----g~i~iwd----~~~~~~~~~~--- 428 (475)
+|++||+.. ++.. .. +.++...+..++|||||+++++.... ..|.+|| +.++.....+
T Consensus 223 ~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 223 VVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc
Confidence 789999975 4432 11 23567788999999999877774432 2588899 8887655444
Q ss_pred -eccCCCeE-----EEEEcCCCCeEEEE
Q 011924 429 -IDFFGEIS-----GISFSPDTESLFIG 450 (475)
Q Consensus 429 -~~~~~~i~-----~l~fspdg~~l~~~ 450 (475)
..|.+.+. .+.|||||+.|+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred cccCCceEccccCCccEECCCCCeEEEE
Confidence 35666666 89999999987764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-16 Score=156.35 Aligned_cols=229 Identities=12% Similarity=0.047 Sum_probs=156.3
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCC-CCCceEEEeeecCCCCceeEEEEEeCCCCCeE-EEEEe-------------
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVH-FTASN------------- 254 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~-l~s~s------------- 254 (475)
+..+++ ++++|++++.+ .|.+|++. ...... ......+ +...++++ +|+|+.+ +++++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEE--CCCCCEEEEEEecCCcceeccceeec
Confidence 345666 88889888877 99999986 433221 1111111 22455777 9999852 44442
Q ss_pred CCCeEEEEECC-CCeeeeeee-----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CC
Q 011924 255 NDCGVRDFDMG-KYQLSKHFR-----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NP 327 (475)
Q Consensus 255 ~dg~v~iwd~~-~~~~~~~~~-----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg 327 (475)
.++++.+|++. .++....+. ....+. +++|+|+|++|+++.. ++
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-----------------------------~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-----------------------------GMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-----------------------------EEEECTTSSEEEEEETTTT
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcce-----------------------------EEEECCCCCEEEEEcCCCC
Confidence 68999999997 455543332 233455 8999999998887753 67
Q ss_pred cEEEEECC-CCceE--EEee--cCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCC-CCceE---EEEec-------CC
Q 011924 328 DGLLVDSM-TGKTI--ASLC--GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRN-LSESV---AVLKG-------NL 390 (475)
Q Consensus 328 ~i~iwd~~-~~~~~--~~l~--~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~-~~~~~---~~~~~-------~~ 390 (475)
.|.+|++. +|+.. ..+. .|...+..++|+|+|+++++++. +++|.+|++.. .++.. ..+.. +.
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 89999998 77653 3343 24567899999999999988875 78999998753 23332 22221 12
Q ss_pred C------ceEEEE-EccCCCEEEEEcCC-C-----eEEEEECC-CCeeEEE---EeccCCCeEEEEEcC---CCCeEEEE
Q 011924 391 G------AIRSIR-YTSDGRYMATAEPA-D-----FVHVYDVK-SGYEKEQ---EIDFFGEISGISFSP---DTESLFIG 450 (475)
Q Consensus 391 ~------~v~~l~-~spdg~~la~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~i~~l~fsp---dg~~l~~~ 450 (475)
. .+..++ |+|||++|+++..+ + .|.+|++. ++..... ...+...+..++|+| ||++|+++
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence 1 478999 99999998877643 2 89999996 5654431 223445677899999 89999999
Q ss_pred EecC
Q 011924 451 VWDR 454 (475)
Q Consensus 451 ~~D~ 454 (475)
..+.
T Consensus 328 ~~~~ 331 (365)
T 1jof_A 328 DDQE 331 (365)
T ss_dssp CSSS
T ss_pred EcCC
Confidence 8763
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-17 Score=174.42 Aligned_cols=294 Identities=6% Similarity=-0.055 Sum_probs=198.5
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec----
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF---- 207 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~---- 207 (475)
.++.|+++...++...++.|++|+..+++...++..... ....|.+++| +|++|++++.
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~---------------~~~~~~~~~~SpDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTM---------------KSVNASNYGLSPDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHH---------------HTTTCSEEEECTTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccc---------------cccceeeEEECCCCCeEEEEecCcee
Confidence 355677777555555678999999988887666542210 0012556666 9999998876
Q ss_pred -----CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc------
Q 011924 208 -----QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP------ 276 (475)
Q Consensus 208 -----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------ 276 (475)
++.|++|++..........+ ...+..++| ||+|+. |+.++ ++.|++|++.+++........
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~--SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~ 155 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCW--SPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIF 155 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEE--CSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEE
T ss_pred EEeecceEEEEEECCCCccccceec----CcccccceE--CCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeE
Confidence 78999999986543100011 245778888 999997 66664 789999999887765432111
Q ss_pred ----------------ccEEeccCCceEE----------------------------------------EEEEeecccce
Q 011924 277 ----------------WPVNVSSSYCIIL----------------------------------------LCRLLNFMTEK 300 (475)
Q Consensus 277 ----------------~~v~~s~~~~~l~----------------------------------------~~~v~d~~~~~ 300 (475)
..+.|||+|..|+ .+.+||..+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 3688999998885 34478887765
Q ss_pred EE---E---------EeeeeeeEEECCCCcEEEEEeCC----CcEEEEE----CCCCceEEEe----ecCCCCeE-----
Q 011924 301 VI---I---------CLLCLQHSSQSPDGKLLIIVGDN----PDGLLVD----SMTGKTIASL----CGHLDFSF----- 351 (475)
Q Consensus 301 ~~---~---------~~~~i~~~~~sp~g~~l~~~~~d----g~i~iwd----~~~~~~~~~l----~~h~~~v~----- 351 (475)
.. . ....+..++||||++++++.... ..|.+|| +.+++....+ .+|...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCC
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCC
Confidence 31 1 11246789999998877775433 2488999 8877765555 46777776
Q ss_pred EEEEecCCCEEEE--EeCCC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-----CeEEEEECCC-
Q 011924 352 ASAWHPNGVTFAT--GNQDK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKS- 421 (475)
Q Consensus 352 ~~~~sp~g~~l~t--~s~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----g~i~iwd~~~- 421 (475)
.++|+|+|+.|+. +..++ .|.+||+.. ++ ...+..+...+..+.++ +|+.|+..+.+ +.+++|.+..
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-EN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCS-TT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCC-Cc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 8899999996654 44555 577777754 33 55666666668888888 88877766654 7788887653
Q ss_pred -Ce-eEEEEec----cCCCeEEEEEcCCCCeEEEEEec
Q 011924 422 -GY-EKEQEID----FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 422 -~~-~~~~~~~----~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+. ....+.. +...+..+.|||+|++|+..+..
T Consensus 393 ~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 393 SYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp SSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred CCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 42 1223322 44678899999999998865443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=175.46 Aligned_cols=233 Identities=17% Similarity=0.167 Sum_probs=159.9
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCC-----ceeEEEEEeCCCCCeEEEEEeCC--------
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-----ITNAVEIYGSPSGAVHFTASNND-------- 256 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~s~~g~~~l~s~s~d-------- 256 (475)
..+++| ++.+|+++ +|+|++|++.+.... .++..|.. ..+.+.| ||+|+. ++.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--Spdg~~-l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---VFLENSTFDEFGHSINDYSI--SPDGQF-ILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---EEECTTTTTTCCSCCCEEEE--CTTSSE-EEEEEEEEECSSSCE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceE---EEEechhhhhhcccccceEE--CCCCCE-EEEEECCeeeEEEcc
Confidence 446777 77788876 999999999876643 34444432 1233667 999997 6666555
Q ss_pred -CeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 257 -CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 257 -g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
+.+.+||+.+++......++..+. .++|||||+.||.+. ++.|++|++.
T Consensus 91 ~~~~~~~d~~~~~~~~l~~~~~~~~-----------------------------~~~~SPdG~~la~~~-~~~i~~~~~~ 140 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITEERIPNNTQ-----------------------------WVTWSPVGHKLAYVW-NNDIYVKIEP 140 (740)
T ss_dssp EEEEEEEETTTTEECCSSCCCTTEE-----------------------------EEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceEEEEEECCCCcEEEcccCCCcce-----------------------------eeEECCCCCEEEEEE-CCeEEEEECC
Confidence 566799999998765444666777 899999999999884 6789999998
Q ss_pred CCceEEE-eecCCCCe-----------------EEEEEecCCCEEEEEeCCC----------------------------
Q 011924 336 TGKTIAS-LCGHLDFS-----------------FASAWHPNGVTFATGNQDK---------------------------- 369 (475)
Q Consensus 336 ~~~~~~~-l~~h~~~v-----------------~~~~~sp~g~~l~t~s~dg---------------------------- 369 (475)
+++..+. ..++...+ .++.|||||+.||.++.|.
T Consensus 141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 8875432 12333222 3489999999999886321
Q ss_pred --------eEEEEECCC---CCc-eEEEEec------CCCceEEEEEccCCCEEEEEcC----CCeEEEEECCCCe----
Q 011924 370 --------TCRIWDLRN---LSE-SVAVLKG------NLGAIRSIRYTSDGRYMATAEP----ADFVHVYDVKSGY---- 423 (475)
Q Consensus 370 --------~v~iwd~~~---~~~-~~~~~~~------~~~~v~~l~~spdg~~la~~~~----dg~i~iwd~~~~~---- 423 (475)
+|++||+.. ... ....+.. +...+..++|+|||+.++.... +..|.+||+.++.
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 578889864 321 2334432 6667899999999997665533 3479999998886
Q ss_pred eE--EEE--eccCCCeE-----EEEEcCCCCeEE-EEEecCCcceEEEE
Q 011924 424 EK--EQE--IDFFGEIS-----GISFSPDTESLF-IGVWDRTYGSLLEY 462 (475)
Q Consensus 424 ~~--~~~--~~~~~~i~-----~l~fspdg~~l~-~~~~D~~~~~ll~~ 462 (475)
+. ..+ ..+.+.+. .++|||||+.|+ ..+...-...|..+
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 21 122 34555544 789999999988 66544333444433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-18 Score=174.44 Aligned_cols=215 Identities=13% Similarity=0.018 Sum_probs=154.3
Q ss_pred CCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeeeeecc----ccEEeccCCceEEE---------EEEeecc
Q 011924 232 NAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFRFP----WPVNVSSSYCIILL---------CRLLNFM 297 (475)
Q Consensus 232 ~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~----~~v~~s~~~~~l~~---------~~v~d~~ 297 (475)
..+|.++++ +|+|+. |++++. ||+++||++.+++..+...+. ..+.|+|+ ..+.. .++|...
T Consensus 21 ~~~~~~~~~--~~DG~~-la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQG--VVDGDK-LLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEE--EETTTE-EEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeec--CCCCCe-EEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 346888988 999997 555554 999999999777665544333 34457877 55531 2444332
Q ss_pred c---ceEEE--EeeeeeeEEECCCCcE-EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC---
Q 011924 298 T---EKVII--CLLCLQHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD--- 368 (475)
Q Consensus 298 ~---~~~~~--~~~~i~~~~~sp~g~~-l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d--- 368 (475)
. +.... ....+...+|+|+|+. +++.+.++.+.+||+.+++.......+ . .+++|+|||++|++++.+
T Consensus 97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETT
T ss_pred ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCC
Confidence 2 11111 1113446688888753 333444455669999988765554433 3 789999999999988877
Q ss_pred -CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC--eEEEEECCCCeeEEEEeccCCCeEEEE------
Q 011924 369 -KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEKEQEIDFFGEISGIS------ 439 (475)
Q Consensus 369 -g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~------ 439 (475)
++|++||+.. ++ ...+..+.+.+..++|||||++|+++..++ .|++||+.++... .+..+...+..++
T Consensus 174 ~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 174 RVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred CeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 7899999975 44 446788888899999999999999888888 8999999998777 6666766676677
Q ss_pred --EcCCCCeEEEEEecCCc
Q 011924 440 --FSPDTESLFIGVWDRTY 456 (475)
Q Consensus 440 --fspdg~~l~~~~~D~~~ 456 (475)
|||||..+++++.|+++
T Consensus 251 ~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp EEECTTSCEEEEEEETTEE
T ss_pred eeEcCCCcEEEEEEcCCcE
Confidence 99999777888888765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-15 Score=149.36 Aligned_cols=221 Identities=9% Similarity=0.055 Sum_probs=149.0
Q ss_pred EEEEEecC--ceEEEEeCCCCCceEE-Eeee-cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC-CCeeeeeeec
Q 011924 201 LLVAGGFQ--GELICKHLDRPGVSFC-SRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKHFRF 275 (475)
Q Consensus 201 ~lvsg~~d--g~i~vw~~~~~~~~~~-~~~~-~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~ 275 (475)
.|++|+.. +.|.+|.++....... .... ......+..+++ +|+|+. |++++.+ .|.+|++. ++++.....+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~--spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTF--DHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEE--CTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEE--CCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 45666653 5788888754332221 1111 123345678888 999986 6666666 99999997 7766543332
Q ss_pred c--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcE--EEEEe-------------CCCcEEEEECC-CC
Q 011924 276 P--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKL--LIIVG-------------DNPDGLLVDSM-TG 337 (475)
Q Consensus 276 ~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~--l~~~~-------------~dg~i~iwd~~-~~ 337 (475)
. .... +++|+|+|+. ++++. .++.+.+|++. .|
T Consensus 80 ~~~g~~~-----------------------------~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g 130 (365)
T 1jof_A 80 PIGGHPR-----------------------------ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG 130 (365)
T ss_dssp ECCSSGG-----------------------------GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC
T ss_pred ecCCCCc-----------------------------cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC
Confidence 1 2233 6789999995 44442 68899999997 56
Q ss_pred ceEEEee----cCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCce--EEEEe--cCCCceEEEEEccCCCEEEEE
Q 011924 338 KTIASLC----GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSES--VAVLK--GNLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 338 ~~~~~l~----~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~--~~~~~--~~~~~v~~l~~spdg~~la~~ 408 (475)
+....+. .+...+.+++|+|+|+++++++. +++|++||+...++. +..+. .+...++.++|+|+|++|+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~ 210 (365)
T 1jof_A 131 KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL 210 (365)
T ss_dssp CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE
Confidence 6554443 24567999999999998887764 679999999722443 23333 234568999999999998877
Q ss_pred cC-CCeEEEEECC--CCeeEE---EEecc-------CC------CeEEEE-EcCCCCeEEEEEecC
Q 011924 409 EP-ADFVHVYDVK--SGYEKE---QEIDF-------FG------EISGIS-FSPDTESLFIGVWDR 454 (475)
Q Consensus 409 ~~-dg~i~iwd~~--~~~~~~---~~~~~-------~~------~i~~l~-fspdg~~l~~~~~D~ 454 (475)
+. ++.|.+|++. ++.... .+... .+ .+.+++ |||||++|+++..+.
T Consensus 211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 64 6899999865 565421 22211 11 488999 999999998876544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-15 Score=146.18 Aligned_cols=270 Identities=10% Similarity=-0.057 Sum_probs=179.0
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe----------cCceEEEEeCC
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG----------FQGELICKHLD 217 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~----------~dg~i~vw~~~ 217 (475)
++.+..|+..+++....+... ..+ .+++ ++++|+++. .++.|.+||+.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g------------------~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA------------------FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC------------------EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred cCeEEEEECCCCeEEEEecCC------------------CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 468899998777654332210 112 4555 899998876 36789999988
Q ss_pred CCCceEEEeeecC---CCCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeee-eecccc--EEeccCCce-EE
Q 011924 218 RPGVSFCSRTTYD---DNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKH-FRFPWP--VNVSSSYCI-IL 289 (475)
Q Consensus 218 ~~~~~~~~~~~~~---~~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~-~~~~~~--v~~s~~~~~-l~ 289 (475)
+.+.......... +......+++ +|+|++++++... +++|.+||+.+++.+.. +..... +.+.|.+.. +.
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFM 167 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEE
Confidence 6665433322211 1233566778 9999985555433 68999999999988877 553322 334443311 11
Q ss_pred ------EEEEeeccc-ceEEEEee---------eeeeEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEeec------
Q 011924 290 ------LCRLLNFMT-EKVIICLL---------CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCG------ 345 (475)
Q Consensus 290 ------~~~v~d~~~-~~~~~~~~---------~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~~------ 345 (475)
.+.+++... ++...... ....+.++|++..++..+.++.+.++|+..+.. +..+..
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 123344432 33321111 001223456777778788889999999875542 222211
Q ss_pred CC----CCeEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 346 HL----DFSFASAWHPNGVTFATGNQ-----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 346 h~----~~v~~~~~sp~g~~l~t~s~-----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+. .....++|+|+++.++++.. ..+|.+||+.+ .+.+..+..+. +.+++|+|+|++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence 00 11223789999888877653 35899999977 78888888776 889999999999999887
Q ss_pred CCeEEEEECCCC--eeEEEEeccCCCeEEEEEcCCCC
Q 011924 411 ADFVHVYDVKSG--YEKEQEIDFFGEISGISFSPDTE 445 (475)
Q Consensus 411 dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~fspdg~ 445 (475)
+.|.+||+.++ +.+..+.........++|+|+|+
T Consensus 325 -~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 88888767778889999999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=152.09 Aligned_cols=275 Identities=13% Similarity=0.066 Sum_probs=173.6
Q ss_pred ceeEEecCCCeEEEecC----CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCc
Q 011924 134 RNLVWATSKHDVYLMSH----FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQG 209 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~----~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg 209 (475)
..+.|++++..|++... ..+++|+..+++...+....+ .......++.+++.|+.++.++
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~----------------~~~~~~~~spdg~~l~~~~~~~ 102 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG----------------DNTFGGFISTDERAFFYVKNEL 102 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC----------------BCTTTCEECTTSSEEEEEETTT
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC----------------CccccceECCCCCEEEEEEcCC
Confidence 44557788877777543 368888876665433211100 0000012334899999999999
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeE---EE--------------EEeCCCCCeEEEEE----eCCCeEEEEECCCCe
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNA---VE--------------IYGSPSGAVHFTAS----NNDCGVRDFDMGKYQ 268 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~---l~--------------~~~s~~g~~~l~s~----s~dg~v~iwd~~~~~ 268 (475)
.|++|++...... .+...+...... |. ..++|+++.+++.. ..+..|.+||+.+++
T Consensus 103 ~l~~~d~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 103 NLMKVDLETLEEQ---VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp EEEEEETTTCCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred cEEEEECCCCCcE---EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 9999999865533 222222222111 11 11267776532222 456688889988877
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCC------CcEEEEECCCCceEE
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDN------PDGLLVDSMTGKTIA 341 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d------g~i~iwd~~~~~~~~ 341 (475)
..........+. .+.|+| +++.|+.++.+ ..|.+|++..++..
T Consensus 180 ~~~~~~~~~~~~-----------------------------~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~- 229 (396)
T 3c5m_A 180 LEVIHQDTAWLG-----------------------------HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR- 229 (396)
T ss_dssp EEEEEEESSCEE-----------------------------EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-
T ss_pred EEeeccCCcccc-----------------------------cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-
Confidence 665555555666 889999 88877776543 36889998765533
Q ss_pred EeecCC--CCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEecCCCceEEEEEcc-CCCEEEEEc----
Q 011924 342 SLCGHL--DFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAE---- 409 (475)
Q Consensus 342 ~l~~h~--~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~la~~~---- 409 (475)
.+..+. ..+..++|+|+|++|+.++.+ +.|.+||+.+ ++...... .. ... +.|+| +|++|++++
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC-
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEEeee-CC-CCC-CCccCCCCceEEEecCCcc
Confidence 343332 357889999999988877654 4599999976 44333222 22 233 89999 999888754
Q ss_pred ------------CCCeEEEEECCCCeeEEEEeccCC-----------CeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 410 ------------PADFVHVYDVKSGYEKEQEIDFFG-----------EISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 410 ------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
.+..|++||+.++.. ..+..+.. .+..++|+|||++|+.++.+.....+...
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 346899999988764 34444443 25678999999999988765443344444
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-15 Score=143.09 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=168.3
Q ss_pred eeEEEEEE--cCcEEEEEecC------------------------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQ------------------------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS 243 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s 243 (475)
..+.++++ +|+++++...+ +.|.+|+..+.... ......+-.....+++ +
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~--d 99 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSI--D 99 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEE--C
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEE--C
Confidence 46888888 78888887766 47999998765543 2222234446788888 9
Q ss_pred CCCCeEEEEEeCCCeEEEEECCCCe-eeeeeec----------cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 244 PSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFRF----------PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 244 ~~g~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~----------~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
|+|+ ++++.+.++.|++|+..... .+..+.. ..... .++
T Consensus 100 ~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-----------------------------~ia 149 (329)
T 3fvz_A 100 TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-----------------------------DVA 149 (329)
T ss_dssp TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-----------------------------EEE
T ss_pred CCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-----------------------------EEE
Confidence 9998 58888889999999986542 3444421 11233 899
Q ss_pred ECC-CCcEEEEEe-CCCcEEEEECCCCceEEEeec----------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCC
Q 011924 313 QSP-DGKLLIIVG-DNPDGLLVDSMTGKTIASLCG----------HLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 313 ~sp-~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~----------h~~~v~~~~~sp~-g~~l~t~s~dg~v~iwd~~~~ 379 (475)
++| +|.++++.+ .++.|++|+ .+|+.+..+.. +......++++|+ ++++++...+++|++||..+
T Consensus 150 ~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~- 227 (329)
T 3fvz_A 150 VEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT- 227 (329)
T ss_dssp ECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-
T ss_pred EeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-
Confidence 999 888888886 689999999 56877777642 2234889999998 77778888899999999975
Q ss_pred CceEEEEe--cCCCceEEEEEccCCCEEEEE-------cCCCeEEEEECCCCeeEEEEe---ccCCCeEEEEEcCCCCeE
Q 011924 380 SESVAVLK--GNLGAIRSIRYTSDGRYMATA-------EPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESL 447 (475)
Q Consensus 380 ~~~~~~~~--~~~~~v~~l~~spdg~~la~~-------~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~fspdg~~l 447 (475)
++.+..+. .+...+..++|+| |..+++. ..+..|++|++.++..+..+. .+...+.+++++|+|..+
T Consensus 228 G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 228 KEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY 306 (329)
T ss_dssp CCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred CcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence 67777774 3456788999999 4333333 344589999999998887763 466789999999999555
Q ss_pred EEEEecCCcc
Q 011924 448 FIGVWDRTYG 457 (475)
Q Consensus 448 ~~~~~D~~~~ 457 (475)
++...++++.
T Consensus 307 vad~~~~~I~ 316 (329)
T 3fvz_A 307 IGDAHTNTVW 316 (329)
T ss_dssp EEESSSCCEE
T ss_pred EEECCCCEEE
Confidence 5555555553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-14 Score=134.93 Aligned_cols=227 Identities=11% Similarity=0.168 Sum_probs=162.0
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeee---cCCCCceeEEEEEeC-CCCCeEEEEEeC-CCeEEEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGS-PSGAVHFTASNN-DCGVRDFD 263 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~~~s-~~g~~~l~s~s~-dg~v~iwd 263 (475)
...++++ +++++++...++.|.+|+.. .......... ..+...+..+++ . +++. ++++... ++.|++|+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~--~~~~g~-l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAV--VRNSGD-IIVTERSPTHQIQIYN 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEE--ETTTTE-EEEEECGGGCEEEEEC
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEE--EcCCCe-EEEEcCCCCCEEEEEC
Confidence 4567777 67888888889999999976 3322111110 122345677777 5 5554 4555533 88999999
Q ss_pred CCCCeeeeeeec--cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 264 MGKYQLSKHFRF--PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 264 ~~~~~~~~~~~~--~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
.+++.+..+.. ...+. +++++|+|+++++...++.|.+||. .++.+.
T Consensus 107 -~~g~~~~~~~~~~~~~~~-----------------------------~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 155 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPR-----------------------------GVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH 155 (286)
T ss_dssp -TTSCEEEEECTTTCSCEE-----------------------------EEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred -CCCcEEEEecCccCCCce-----------------------------EEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence 56666665542 23455 8999999998887777889999995 466666
Q ss_pred Eee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCC-eEEE
Q 011924 342 SLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPAD-FVHV 416 (475)
Q Consensus 342 ~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg-~i~i 416 (475)
.+. ++...+.+++++|+|+++++...++.|++||.. +..+..+... ...+..++++|+|+++++...++ .|.+
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence 664 355678999999999988888889999999984 4566666543 35788999999999888888776 9999
Q ss_pred EECCCCeeEEEEeccC--CCeEEEEEcCCCCeEEEEEecCCc
Q 011924 417 YDVKSGYEKEQEIDFF--GEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~--~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
||. ++..+..+..+. ..+.+++|+|+|+.+++ ..|+++
T Consensus 234 ~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 234 FTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRL 273 (286)
T ss_dssp ECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred ECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeE
Confidence 995 566666665443 34789999999975555 666544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-14 Score=155.41 Aligned_cols=298 Identities=9% Similarity=-0.017 Sum_probs=192.0
Q ss_pred cceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeE--EEEEEcCcEEEEEecC--
Q 011924 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV--STLAVKDKLLVAGGFQ-- 208 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~lvsg~~d-- 208 (475)
..++.|.++...++.. ++.|++|+..+++...++.... .. . ..... .+++.+|++|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~--~~----------~-~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENST--FD----------E-FGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTT--TT----------T-CCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechh--hh----------h-hcccccceEECCCCCEEEEEECCee
Confidence 3466788887655554 8999999999988766644321 00 0 01122 2344499999988875
Q ss_pred -------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--c----
Q 011924 209 -------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--F---- 275 (475)
Q Consensus 209 -------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~---- 275 (475)
+.+.+||+.+.... .+..+.+.+...+| ||+|+. |+.+ .++.|++|++.+++..+... .
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~--SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTW--SPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEE--CSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred eEEEccceEEEEEECCCCcEE----EcccCCCcceeeEE--CCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 67789999875422 34455667888989 999998 5655 47899999998876544221 1
Q ss_pred ----------------cccEEeccCCceEEE------------------------------------------EEEeecc
Q 011924 276 ----------------PWPVNVSSSYCIILL------------------------------------------CRLLNFM 297 (475)
Q Consensus 276 ----------------~~~v~~s~~~~~l~~------------------------------------------~~v~d~~ 297 (475)
...+.|||+|..|+. +.+||..
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~ 236 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence 123679999987752 4567887
Q ss_pred c---c---eEEEEe---------eeeeeEEECCCCcEEEEEeC----CCcEEEEECCCCc----e--EEEe--ecCCCCe
Q 011924 298 T---E---KVIICL---------LCLQHSSQSPDGKLLIIVGD----NPDGLLVDSMTGK----T--IASL--CGHLDFS 350 (475)
Q Consensus 298 ~---~---~~~~~~---------~~i~~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~----~--~~~l--~~h~~~v 350 (475)
+ + +..... ..+..++|+|||++++.... +..|.+||+.+|+ + +..+ .+|...+
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v 316 (740)
T 4a5s_A 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWV 316 (740)
T ss_dssp SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCS
T ss_pred CCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceE
Confidence 7 6 333221 14678999999997776543 2369999999887 2 1222 4566655
Q ss_pred E-----EEEEecCCCEEE-EEeC-C--CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-----C--eE
Q 011924 351 F-----ASAWHPNGVTFA-TGNQ-D--KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----D--FV 414 (475)
Q Consensus 351 ~-----~~~~sp~g~~l~-t~s~-d--g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----g--~i 414 (475)
. .++|+|||+.|+ ..+. + ..|.+||+.. +. ...+......|..+.. ++++.|+..+.. + .|
T Consensus 317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~-~~-~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~l 393 (740)
T 4a5s_A 317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK-KD-CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNL 393 (740)
T ss_dssp SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC-SS-CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEE
T ss_pred ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC-Cc-eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEE
Confidence 4 789999999877 6654 3 3688888864 33 4455544555665542 456655544332 3 44
Q ss_pred EEEECCCCeeEEEEec----cCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 415 HVYDVKSGYEKEQEID----FFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 415 ~iwd~~~~~~~~~~~~----~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
...++..+.....+.. .......+.|||+|++++.......
T Consensus 394 y~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~ 438 (740)
T 4a5s_A 394 YKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG 438 (740)
T ss_dssp EEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred EEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence 5555554433223332 2356889999999999887765543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=160.09 Aligned_cols=229 Identities=10% Similarity=-0.007 Sum_probs=154.7
Q ss_pred eeEEEEEEcCcEEEE--E--ecCceEEEEeCCCCCceEEEeeecCCCCcee---------EEEEEeCCCCCe-EEEEEeC
Q 011924 190 TQVSTLAVKDKLLVA--G--GFQGELICKHLDRPGVSFCSRTTYDDNAITN---------AVEIYGSPSGAV-HFTASNN 255 (475)
Q Consensus 190 ~~v~~l~~~~~~lvs--g--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~---------~l~~~~s~~g~~-~l~s~s~ 255 (475)
..|..++++++.++. + +.++...+|.....+.. ..+..+...+. ...|..||+|+. ++++...
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE---ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE---EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc---ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 367788885554443 3 34788999986433332 22333333444 444532499997 5555545
Q ss_pred CCeEEEEECC--C-Ceeeeeee-----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-
Q 011924 256 DCGVRDFDMG--K-YQLSKHFR-----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN- 326 (475)
Q Consensus 256 dg~v~iwd~~--~-~~~~~~~~-----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d- 326 (475)
+..|.++++. . +....... +...+. +++|||||+.|++++.+
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-----------------------------~~~~spDg~~l~~~~~~~ 151 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-----------------------------DPVLLPERGEVWCMAEEF 151 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-----------------------------EEEEETTTTEEEEEEEEE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-----------------------------CcEECCCCCEEEEEEecc
Confidence 6677777775 3 43322222 233455 88999999999998876
Q ss_pred ---------CcEEEEECCC------CceEEEee-cCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCC--
Q 011924 327 ---------PDGLLVDSMT------GKTIASLC-GHLDFSFASAWHPNGVTFATGNQD--------KTCRIWDLRNLS-- 380 (475)
Q Consensus 327 ---------g~i~iwd~~~------~~~~~~l~-~h~~~v~~~~~sp~g~~l~t~s~d--------g~v~iwd~~~~~-- 380 (475)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..|.+||+...+
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999987 544 4565 666788889999999999988755 379999997324
Q ss_pred -ceEEEEecCCCceEEEEEccCCCEEEEEcCCC--eEEEEECCCCeeEEEEeccCCC---------eEEEEEcCCCCeEE
Q 011924 381 -ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEKEQEIDFFGE---------ISGISFSPDTESLF 448 (475)
Q Consensus 381 -~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~~---------i~~l~fspdg~~l~ 448 (475)
.......++...+..++|+|||++++++..++ .|.+||+.++... .+..+... +..++|+|++++++
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCCEEEE
Confidence 34444444567899999999999888888787 6777777666543 33332221 56789999999888
Q ss_pred EEEe
Q 011924 449 IGVW 452 (475)
Q Consensus 449 ~~~~ 452 (475)
++..
T Consensus 310 ~~~~ 313 (662)
T 3azo_A 310 VHGK 313 (662)
T ss_dssp EEBS
T ss_pred EEEc
Confidence 8765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-14 Score=135.28 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=160.5
Q ss_pred EEEEEE--cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..+++| +++ +++++..++.|..|+.... . ..+..+...+.++++ +|+|+. +++...++.|.+||..+++
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~~--~~dg~l-~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSHHQNGHCL--NKQGHL-IACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---EEEESSCSSEEEEEE--CTTCCE-EEEETTTTEEEEECSTTCC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---EEEECCCCCcceeeE--CCCCcE-EEEecCCCeEEEEcCCCCc
Confidence 446666 676 7888889999999998764 2 223345566888888 999984 6666667899999998777
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE----e-------------CCCcEEE
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV----G-------------DNPDGLL 331 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~----~-------------~dg~i~i 331 (475)
............+ ..+..++++|+|+++++. + ..+.|..
T Consensus 102 ~~~~~~~~~~~~~------------------------~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 102 WESIADSFEGKKL------------------------NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp EEEEECEETTEEC------------------------CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred EEEEeeccCCCCC------------------------CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEE
Confidence 5433321111110 011178999999988873 2 1345666
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce---EEEEecCCCceEEEEEccCCCEEEEE
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES---VAVLKGNLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~---~~~~~~~~~~v~~l~~spdg~~la~~ 408 (475)
++.. ++ +..+..+......++|+|+++.+++.+.++.|.+||+...+.. ...+..+.+.+.+++++++|+++++.
T Consensus 158 ~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 158 LAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp ECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred ECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 6654 44 4455566777899999999998877777899999999632443 23333345567789999999976666
Q ss_pred cCCCeEEEEECCCCeeEEEEeccCCCeEEEEE-cCCCCeEEEEEecC
Q 011924 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISF-SPDTESLFIGVWDR 454 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f-spdg~~l~~~~~D~ 454 (475)
++.|.+||.. ++.+..+..+.+ +.+++| +|+++.|++++.++
T Consensus 236 --~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 236 --GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp --TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred --CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 7889999976 777777776666 999999 68999999998763
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-14 Score=135.94 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=144.7
Q ss_pred EEEEEE--cCcEEEEEecC---c--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC---------
Q 011924 192 VSTLAV--KDKLLVAGGFQ---G--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--------- 255 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~d---g--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~--------- 255 (475)
+..++| +|+.|+.++.+ + .|.+|++...... .+...+ . +..+.| +|+|+.+++++..
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~---~l~~~~-~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---KILEAK-N-IRSLEW--NEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE---EEEEES-E-EEEEEE--CTTSSEEEEEEECCCC------
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE---EEEcCC-C-ccceeE--CCCCCEEEEEEccCCCcCCcEE
Confidence 455666 88888877654 3 4777777654322 222222 2 788888 9999974544432
Q ss_pred -----------------CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc
Q 011924 256 -----------------DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK 318 (475)
Q Consensus 256 -----------------dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~ 318 (475)
...|.+|++.+++.+..+..+ .+. .++|+|+|
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~-----------------------------~~~~spdg- 182 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFS-----------------------------SGIWHRDK- 182 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTC-----------------------------EEEEETTE-
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecCC-Ccc-----------------------------cccCCCCe-
Confidence 245777777766653333222 344 88999999
Q ss_pred EEEEEeCCC-------cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCCceE
Q 011924 319 LLIIVGDNP-------DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD--------KTCRIWDLRNLSESV 383 (475)
Q Consensus 319 ~l~~~~~dg-------~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d--------g~v~iwd~~~~~~~~ 383 (475)
+++++..+. ...||.+.+++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| . ++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~ 255 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVM 255 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEE
T ss_pred EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceE
Confidence 777765432 33444333554 4445444 555544 9999999887754 3678888 3 4544
Q ss_pred EEEecCCCceEE-EEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 384 AVLKGNLGAIRS-IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 384 ~~~~~~~~~v~~-l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
.....+...+.. +.|+ +| ++++++.++.++|| +.++.. ..+..+.+.|.+++|+| ..+++++.+++...+..+
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 444455667876 9999 98 88999999999999 876654 44555678899999999 677788878777666655
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-14 Score=137.31 Aligned_cols=214 Identities=13% Similarity=0.079 Sum_probs=146.8
Q ss_pred eEEEEEEcCcEEEEEe---------cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC--C--
Q 011924 191 QVSTLAVKDKLLVAGG---------FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--C-- 257 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d--g-- 257 (475)
.+...+++|+.++... .++.|.+|++...... .+ ..+..+.| ||+|+.++++.... +
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l-----~~~~~~~~--SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI-----ENATMPRI--SPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE-----ESCEEEEE--CTTSSEEEEEEEETTTTEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec-----ccCCCeEE--CCCCCEEEEEEeccCCCcc
Confidence 3455555888877642 3678999998865532 22 34677888 99999744444322 3
Q ss_pred eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-----------
Q 011924 258 GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN----------- 326 (475)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----------- 326 (475)
.|.+|++.+++......... +. +++|+|+|+.|+.++.+
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~-~~-----------------------------~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN-IR-----------------------------SLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE-EE-----------------------------EEEECTTSSEEEEEEECCCC--------
T ss_pred eEEEEECCCCceEEEEcCCC-cc-----------------------------ceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 47788888887766555444 77 89999999999888642
Q ss_pred ----------------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-------eEEEEECCCCCceE
Q 011924 327 ----------------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK-------TCRIWDLRNLSESV 383 (475)
Q Consensus 327 ----------------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg-------~v~iwd~~~~~~~~ 383 (475)
..|++||+.+++.+..+.. . .+..++|+|+| ++++++.++ ...||.+. .++ .
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~ 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-E 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-E
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-e
Confidence 5689999998877456655 4 78899999999 777776542 44555554 344 3
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcCC--------CeEEEEECCCCeeEEEEeccCCCeEE-EEEcCCCCeEEEEEecC
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEPA--------DFVHVYDVKSGYEKEQEIDFFGEISG-ISFSPDTESLFIGVWDR 454 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-l~fspdg~~l~~~~~D~ 454 (475)
..+..+ ..+..+ +|+|++|+.++.+ ..|.+|| ++........+...+.. +.|+ +| .++++..|+
T Consensus 211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 444444 455544 9999988877643 3688888 55443333345677886 9999 88 888888777
Q ss_pred Cc
Q 011924 455 TY 456 (475)
Q Consensus 455 ~~ 456 (475)
..
T Consensus 284 ~~ 285 (347)
T 2gop_A 284 SV 285 (347)
T ss_dssp EE
T ss_pred cE
Confidence 54
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-13 Score=130.05 Aligned_cols=234 Identities=14% Similarity=0.116 Sum_probs=161.7
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC----CeEEEEECC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMG 265 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d----g~v~iwd~~ 265 (475)
+.+++| ++++++++..++.|.+|+....... .....+...+.++++ +|+|+. +++...+ +.|.+||..
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~i~~--~~dg~l-~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---RPFVSHKANPAAIKI--HKDGRL-FVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECSSSSEEEEEE--CTTSCE-EEEECTTSSSCCEEEEECTT
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---EEeeCCCCCcceEEE--CCCCcE-EEEeCCCCCCCceEEEEeCC
Confidence 456677 7787788888999999998765533 222234566888988 999974 6666555 689999998
Q ss_pred CCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC------CCcEEEEECCC
Q 011924 266 KYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD------NPDGLLVDSMT 336 (475)
Q Consensus 266 ~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~------dg~i~iwd~~~ 336 (475)
++.....+. ....+. +++++|+|+++++... .+.|..++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~-----------------------------~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCID-----------------------------DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp SCSCEEEECSSSSCCCEE-----------------------------EEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred CCEEEEEEccCccCCccc-----------------------------ceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 766543332 223455 8999999988876653 35567777655
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCCceEEEE--------ecCCCceEEEEEccCCCEEEE
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVL--------KGNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~~~~~~~--------~~~~~~v~~l~~spdg~~la~ 407 (475)
++... +..+...+..++|+|+++.|+.+ +.++.|.+||+...+..+..+ .++ ..+..++++++|+++++
T Consensus 172 ~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 172 RTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp CCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEE
T ss_pred CEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEE
Confidence 55433 33334467899999999866544 557899999996423322211 111 36788999999998888
Q ss_pred EcCCCeEEEEECCCCeeEEEEeccCC------CeEEEEEcCCCCeEEEEEecCC---cceEEEEE
Q 011924 408 AEPADFVHVYDVKSGYEKEQEIDFFG------EISGISFSPDTESLFIGVWDRT---YGSLLEYG 463 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~l~fspdg~~l~~~~~D~~---~~~ll~~~ 463 (475)
...++.|.+||. ++..+..+..... .+.+++|+||++.|++++.++. -+.++.+.
T Consensus 250 ~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 250 MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred EcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 777889999997 5666655554332 6899999999988988777642 34566554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-14 Score=149.28 Aligned_cols=214 Identities=12% Similarity=0.037 Sum_probs=145.1
Q ss_pred EcCcE-EEEEec-CceEEEEeCC--C-CCceEEEeeecC----CCCceeEEEEEeCCCCCeEEEEEeCC----------C
Q 011924 197 VKDKL-LVAGGF-QGELICKHLD--R-PGVSFCSRTTYD----DNAITNAVEIYGSPSGAVHFTASNND----------C 257 (475)
Q Consensus 197 ~~~~~-lvsg~~-dg~i~vw~~~--~-~~~~~~~~~~~~----~~~~v~~l~~~~s~~g~~~l~s~s~d----------g 257 (475)
.+|+. |+.++. +..|.++++. . .... .+... +...+..++| +|+|+. |++++.+ .
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~--spDg~~-l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR---PLTPVSAVGGGLRWADPVL--LPERGE-VWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCE---ECSCCCCSTTCEEEEEEEE--ETTTTE-EEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCE---eccCCccCCCCccccCcEE--CCCCCE-EEEEEecccCCCCCCcee
Confidence 56887 665543 5667777665 2 2221 22221 4566778888 999997 5555555 5
Q ss_pred eEEEEECCC------Ceeeeee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC----
Q 011924 258 GVRDFDMGK------YQLSKHF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN---- 326 (475)
Q Consensus 258 ~v~iwd~~~------~~~~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---- 326 (475)
.|++|++.+ ++..... .+...+. .++|||||+.|+.++.+
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------------------~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVT-----------------------------GPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEEC-----------------------------CCEECTTSSEEEEEEECTTCC
T ss_pred EEEEEECCCCccccCCceeEEEecCCCccc-----------------------------CceECCCCCEEEEEECCCCCC
Confidence 899999987 5554443 3344455 78999999999988754
Q ss_pred ----CcEEEEECC-CC---ceEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCceEEEEecCCCc----
Q 011924 327 ----PDGLLVDSM-TG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSESVAVLKGNLGA---- 392 (475)
Q Consensus 327 ----g~i~iwd~~-~~---~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~~~~~~~~~~~~---- 392 (475)
..|++||+. +| +......+|...+..++|+|||+++++++.++ .|.+||+.. ++.......+...
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPL 291 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCC
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-CceeecccccccccCcc
Confidence 379999998 57 44444455678899999999999888888888 566666643 4433332322221
Q ss_pred ----eEEEEEccCCCEEEEEcCCCeEEEE--ECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 393 ----IRSIRYTSDGRYMATAEPADFVHVY--DVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 393 ----v~~l~~spdg~~la~~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
+..++|+|+++++++++. +.++|| |+.++. +..+..+.+.+..+ |++++..++.
T Consensus 292 w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~ 351 (662)
T 3azo_A 292 WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVG 351 (662)
T ss_dssp CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEE
T ss_pred ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEE
Confidence 567899999999999998 988888 666665 56666677777766 1455555443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=134.57 Aligned_cols=236 Identities=9% Similarity=-0.045 Sum_probs=163.9
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEECCCCeeeeeee---
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFR--- 274 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~--- 274 (475)
.++.|.+||..+.+.. .....+..+ .+++ +|+|+.++++.. .+++|.+||+.+++.+..+.
T Consensus 29 ~d~~v~v~D~~t~~~~---~~i~~g~~p--~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL---GMVPTAFNG--HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEE---EEEECCEEE--EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEE---EEecCCCCC--ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 4789999998766544 222233333 6777 999998555432 36789999999988877665
Q ss_pred -------ccccEEeccCCceEE--------EEEEeecccceEEEE-eeeee--eEEECCCC-cEEEEEeCCCcEEEEECC
Q 011924 275 -------FPWPVNVSSSYCIIL--------LCRLLNFMTEKVIIC-LLCLQ--HSSQSPDG-KLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 275 -------~~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~-~~~i~--~~~~sp~g-~~l~~~~~dg~i~iwd~~ 335 (475)
.+..+.|+|+++.+. .+.+||..+++.+.. +..-. .+.+.|++ ..+++.+.+|.+.+|++.
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 356788999998773 578999999887765 33211 25677865 677788899999999986
Q ss_pred C-CceEEEe------ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-eEEEEecC----------CCceEEEE
Q 011924 336 T-GKTIASL------CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGN----------LGAIRSIR 397 (475)
Q Consensus 336 ~-~~~~~~l------~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~----------~~~v~~l~ 397 (475)
. ++..... ..+..++ .+.++|++..++..+.+++|.++|+..... ....+... ......++
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence 4 6554222 2222222 334577888888888899999999964221 12222110 01122378
Q ss_pred EccCCCEEEEEcC-----------CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 398 YTSDGRYMATAEP-----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 398 ~spdg~~la~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
|+|+++.++++.. .+.|.+||+++++.+..+..+. +.+++|+|||++|+++..
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence 9999888777643 3589999999999988887765 999999999999998764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-15 Score=144.24 Aligned_cols=220 Identities=13% Similarity=0.106 Sum_probs=146.0
Q ss_pred EEcCcEEEEEec-Cc--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee
Q 011924 196 AVKDKLLVAGGF-QG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272 (475)
Q Consensus 196 ~~~~~~lvsg~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (475)
+.+|+.|+.++. +| .|.+|++...... .++..+...+..+.| +|+|+. |+.++.++.|++||+.+++....
T Consensus 44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~--spdg~~-l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---QLTEGRGDNTFGGFL--SPDDDA-LFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTCEEE---ECCCSSCBCSSSCEE--CTTSSE-EEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEEcCCCCceEEEEeCCCCceE---EeeeCCCCCccceEE--cCCCCE-EEEEeCCCeEEEEECCCCcceee
Confidence 338998888877 67 4777787654332 455555555545667 999997 77777889999999999887665
Q ss_pred eecccc-EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe----------------------CCCcE
Q 011924 273 FRFPWP-VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----------------------DNPDG 329 (475)
Q Consensus 273 ~~~~~~-v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----------------------~dg~i 329 (475)
+..+.. +.. ....++|++++++... .+..|
T Consensus 118 ~~~~~~~~~~---------------------------~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 118 YQVPAEWVGY---------------------------GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp EECCTTEEEE---------------------------EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred eechhhcccc---------------------------cceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 553332 210 0224588998887432 34679
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEECCCCCceEEEEecCC--CceEEEEEcc
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQD------KTCRIWDLRNLSESVAVLKGNL--GAIRSIRYTS 400 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~d------g~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~sp 400 (475)
++||+.+++.. .+..+...+..++|+| +|+.|+..+.. ..|.++|+.. .....+..+. ..+..++|+|
T Consensus 171 ~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 171 MRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCTHEFWVP 247 (388)
T ss_dssp EEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEEEEEECT
T ss_pred EEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC--CceEEeeeCCCCcccccceECC
Confidence 99999988754 4445677899999999 99999887753 2677778753 3344444443 3577899999
Q ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeEEEEeccCC------CeEEEEEcCCCCeEEEEEe
Q 011924 401 DGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDFFG------EISGISFSPDTESLFIGVW 452 (475)
Q Consensus 401 dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~------~i~~l~fspdg~~l~~~~~ 452 (475)
||+.|+..+.. ..|++||+.+++...... ..+ ...+++|+|||+.|+....
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC-----
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEee
Confidence 99977665432 249999999886433211 111 1223479999999987643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-13 Score=141.96 Aligned_cols=225 Identities=11% Similarity=0.009 Sum_probs=158.7
Q ss_pred eEEEEEE--cCcEEEEEecCc-----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe-----
Q 011924 191 QVSTLAV--KDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG----- 258 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~----- 258 (475)
.+..++| +|++|+.+...+ +|++|++.+..... ...... .+..++| +|+|+. |+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--~~~~~~--~~~~~~w--spDg~~-l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DVLERV--KFSCMAW--THDGKG-MFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EEEEEE--CSCCEEE--CTTSSE-EEEEECCCCSSCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--ccccCc--ccceEEE--EeCCCE-EEEEEECCcccccc
Confidence 5677777 899988776543 89999998765432 111111 2566888 999997 555556654
Q ss_pred -----------EEEEECCCCeee--eeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 259 -----------VRDFDMGKYQLS--KHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 259 -----------v~iwd~~~~~~~--~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
|++|++.+++.. ..+. ++..+. .++|||+|++|+.
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~-----------------------------~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG-----------------------------GAELSDDGRYVLL 249 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE-----------------------------EEEECTTSCEEEE
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE-----------------------------EEEEcCCCCEEEE
Confidence 999999876532 2222 233345 7899999999988
Q ss_pred EeC-----CCcEEEEECCC------Cc-eEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCCc-eEEE
Q 011924 323 VGD-----NPDGLLVDSMT------GK-TIASLCGHLDFSFASAWHPNGVTFATGNQD----KTCRIWDLRNLSE-SVAV 385 (475)
Q Consensus 323 ~~~-----dg~i~iwd~~~------~~-~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d----g~v~iwd~~~~~~-~~~~ 385 (475)
++. +..|++||+.+ +. ....+..+...+.. .|+|+|..|+..+.. ..|.+||+..... ....
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 764 56899999976 53 45667777766655 588998888776653 3699999976321 2344
Q ss_pred EecCCC--ceEEEEEccCCCEEEEEcCCC--eEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 386 LKGNLG--AIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 386 ~~~~~~--~v~~l~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
+..+.. .+..++|++++.+++++..++ .|.+|++.+|..+..+..+.+.+.+++++|++..|+....
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 555443 688899998888888888887 4677788778777777767788999999999987775533
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-11 Score=127.35 Aligned_cols=279 Identities=14% Similarity=0.085 Sum_probs=187.4
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCC--CCCceEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD--RPGVSFC 224 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~--~~~~~~~ 224 (475)
.++.|.+++..+++....+... ..+..+.+ ++++|++++.+|.|.+||+. +....
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g-------------------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-- 233 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTG-------------------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-- 233 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECS-------------------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--
T ss_pred CCCeEEEEECCCCeEEEEEeCC-------------------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--
Confidence 3588999999888766544321 11234445 89999999999999999995 44333
Q ss_pred EeeecCCCCceeEEEEEeC----CCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc---------------ccEEeccCC
Q 011924 225 SRTTYDDNAITNAVEIYGS----PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---------------WPVNVSSSY 285 (475)
Q Consensus 225 ~~~~~~~~~~v~~l~~~~s----~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---------------~~v~~s~~~ 285 (475)
..+..+ .....+++ + |+|++++++...+++|.++|..+.+.+..+... ..+.+++.+
T Consensus 234 ~~i~~G--~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 234 AEIKIG--SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EEEECC--SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EEEecC--CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 222222 23467777 9 699987778888899999999998887766521 123344544
Q ss_pred ceEE-------EEEEeecccceEEE-----EeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeec-----CC
Q 011924 286 CIIL-------LCRLLNFMTEKVII-----CLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG-----HL 347 (475)
Q Consensus 286 ~~l~-------~~~v~d~~~~~~~~-----~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~-----h~ 347 (475)
.... .+.++|....+... .......+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 4332 34455554432211 111345788999999987765 578899999999998776653 43
Q ss_pred CCeEEEEEecCC-CEEEEEe-CCCeEEEEECCCC------CceEEEEecCCCceEEEEEccCCCEEEEEcC-------CC
Q 011924 348 DFSFASAWHPNG-VTFATGN-QDKTCRIWDLRNL------SESVAVLKGNLGAIRSIRYTSDGRYMATAEP-------AD 412 (475)
Q Consensus 348 ~~v~~~~~sp~g-~~l~t~s-~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~spdg~~la~~~~-------dg 412 (475)
+....+ ++|++ ...+++. .+++|.++|.... .+.+..+......-..++.+|++++|.+... .+
T Consensus 390 g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 390 GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 322222 58874 4445554 4689999998652 3567777765444346889999999998763 35
Q ss_pred eEEEEECCCC-----eeE-EEEec--------cCCCeEEEEEcCCCCeEEEEEec
Q 011924 413 FVHVYDVKSG-----YEK-EQEID--------FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 413 ~i~iwd~~~~-----~~~-~~~~~--------~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.|.|+|+.+. ... ..+.. ....+..+.|+|+|++|+++.|.
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~ 523 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN 523 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeec
Confidence 8999999876 222 22211 13478999999999999999874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-13 Score=126.72 Aligned_cols=213 Identities=12% Similarity=0.032 Sum_probs=165.7
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 276 (475)
.+++|++++.++.|.+||..+.+....... +....+..+.+ +|+|+. ++ +.++.|..||. +++.+..+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~--~pdG~i-lv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--EKGWECNSVAA--TKAGEI-LF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC--CTTCCCCEEEE--CTTSCE-EE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--CccCCCcCeEE--CCCCCE-EE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 467899999999999999877665543222 22135678888 999985 55 35788999999 88888888753
Q ss_pred -ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEEeec------CCC
Q 011924 277 -WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCG------HLD 348 (475)
Q Consensus 277 -~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~l~~------h~~ 348 (475)
..+. ++.+.|+|+++++.+. ++.+..+|. +|+.+..+.. +..
T Consensus 76 ~~~~~-----------------------------~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~ 125 (276)
T 3no2_A 76 GCEMQ-----------------------------TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHA 125 (276)
T ss_dssp TCEEE-----------------------------EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGG
T ss_pred Ccccc-----------------------------ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccc
Confidence 3555 8889999999999887 778888885 7888777652 223
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
....+++.++|+++++...++.|..||.. ++.+-.+... ..+.++.+.++|+++++++.++.|..+|..+|+.+.++
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 45567789999999999999999999985 6777777654 34567888999999999988889999999999998887
Q ss_pred eccC------CCeEEEEEcCCCCeEEEEE
Q 011924 429 IDFF------GEISGISFSPDTESLFIGV 451 (475)
Q Consensus 429 ~~~~------~~i~~l~fspdg~~l~~~~ 451 (475)
.... ..+.++...++|..+++..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cCCCCCCccccccccceEcCCCCEEEEec
Confidence 6432 2378899999998776653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=127.41 Aligned_cols=228 Identities=11% Similarity=0.063 Sum_probs=153.7
Q ss_pred eEEEEEE--cCcEEE-EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--KDKLLV-AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
...++++ ++++++ +.+.++.|.+|+....... .........+..+++ +++|. ++++.. ++.|.+|+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~--~~~g~-l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAV--DGAGT-VYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEE--CTTCC-EEEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEE--CCCCC-EEEEcC-CCEEEEEeCCCc
Confidence 4567777 677666 5477899999986543322 121223345677888 89887 466655 889999998765
Q ss_pred eeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec
Q 011924 268 QLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 268 ~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~ 345 (475)
... .+. ....+. +++++|+|+++++...++.|.+|+..+.........
T Consensus 98 ~~~-~~~~~~~~~p~-----------------------------~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 147 (270)
T 1rwi_B 98 NQT-VLPFDGLNYPE-----------------------------GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT 147 (270)
T ss_dssp CCE-ECCCCSCSSEE-----------------------------EEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC
T ss_pred eEe-eeecCCcCCCc-----------------------------ceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc
Confidence 432 222 123455 889999999887777788999998665544332233
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeE
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
....+.+++++|+|+++++...++.|.+||... .........+...+..++++++|+++++...++.|.+|+..+....
T Consensus 148 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 148 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST 226 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred cCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence 344678899999999777777788999999865 3333222233356889999999988887777889999998765433
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.....+...+.+++++|+|+.+++...++++
T Consensus 227 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 227 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp ECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred eeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 2222234578999999999855555555544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-12 Score=120.43 Aligned_cols=234 Identities=10% Similarity=0.090 Sum_probs=156.8
Q ss_pred eeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEec-C
Q 011924 135 NLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGF-Q 208 (475)
Q Consensus 135 ~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~-d 208 (475)
.+.+.+. ..+|++ .++.|..|+.. ++....+...+. . ..+...+..+++ ++.++++... +
T Consensus 34 ~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~------~------~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 34 GVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGK------R------DSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp EEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSS------S------TTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred eEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEecccCC------C------cccccCceEEEEEcCCCeEEEEcCCCC
Confidence 3334433 346664 35789999865 333222221110 0 001124567777 4555555533 8
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec---cccEEeccCC
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF---PWPVNVSSSY 285 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~v~~s~~~ 285 (475)
+.|.+|+.. .... ......+...+..+++ +|+|+ ++++...++.|.+|+.. ++.+..+.. ...+.
T Consensus 100 ~~i~~~d~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~----- 167 (286)
T 1q7f_A 100 HQIQIYNQY-GQFV--RKFGATILQHPRGVTV--DNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN----- 167 (286)
T ss_dssp CEEEEECTT-SCEE--EEECTTTCSCEEEEEE--CTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE-----
T ss_pred CEEEEECCC-CcEE--EEecCccCCCceEEEE--eCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE-----
Confidence 899999943 3222 2222234456788888 99997 47777778999999964 555555542 23355
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC--CCCeEEEEEecCCCEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH--LDFSFASAWHPNGVTFA 363 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h--~~~v~~~~~sp~g~~l~ 363 (475)
+++++|+|+++++...++.|++||. .++.+..+..+ ...+..++++|+|++++
T Consensus 168 ------------------------~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v 222 (286)
T 1q7f_A 168 ------------------------GVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILI 222 (286)
T ss_dssp ------------------------EEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEE
T ss_pred ------------------------EEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEE
Confidence 8999999998887778899999997 56666667543 36789999999999888
Q ss_pred EEeCCC-eEEEEECCCCCceEEEEecCCC--ceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 364 TGNQDK-TCRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 364 t~s~dg-~v~iwd~~~~~~~~~~~~~~~~--~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+...++ .|.+||.. ++.+..+..+.. .+.+++++|+|+++++ +.++.|++|++...
T Consensus 223 ~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 223 ADNHNNFNLTIFTQD--GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EECSSSCEEEEECTT--SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EeCCCCEEEEEECCC--CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 888776 99999963 566666655432 4779999999987766 56899999997653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-13 Score=128.33 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=153.2
Q ss_pred eEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCC-ceEEEeee
Q 011924 152 SVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTT 228 (475)
Q Consensus 152 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~-~~~~~~~~ 228 (475)
.|..|+..+++....+.. + .-.....+++ +++++++...++.|++|+..... ... .+.
T Consensus 70 ~i~~~d~~~g~~~~~~~~-~----------------~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~--~~~ 130 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGK-N----------------LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL--ILG 130 (329)
T ss_dssp CEEEECTTTCCEEEEECT-T----------------TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE--EES
T ss_pred cEEEEECCCCeEEeccCC-C----------------ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE--Eec
Confidence 588888777665432211 0 0113556777 78888888889999999986442 121 111
Q ss_pred --------cCCCCceeEEEEEeCC-CCCeEEEEEe-CCCeEEEEECCCCeeeeeeecccc------EEeccCCceEEEEE
Q 011924 229 --------YDDNAITNAVEIYGSP-SGAVHFTASN-NDCGVRDFDMGKYQLSKHFRFPWP------VNVSSSYCIILLCR 292 (475)
Q Consensus 229 --------~~~~~~v~~l~~~~s~-~g~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~------v~~s~~~~~l~~~~ 292 (475)
..+-...+.|++ +| +|. ++++.+ .++.|++|+ ..++.+..+..... -.+
T Consensus 131 ~~~~~g~~~~~~~~P~~ia~--~~~~g~-lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~----------- 195 (329)
T 3fvz_A 131 RSMQPGSDQNHFCQPTDVAV--EPSTGA-VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQF----------- 195 (329)
T ss_dssp BTTBCCCSTTCCSSEEEEEE--CTTTCC-EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEE-----------
T ss_pred ccCCCCCCccccCCCcEEEE--eCCCCe-EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCccc-----------
Confidence 223335678888 99 665 477775 689999999 45666665542110 000
Q ss_pred EeecccceEEEEeeeeeeEEECCC-CcEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEE----
Q 011924 293 LLNFMTEKVIICLLCLQHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATG---- 365 (475)
Q Consensus 293 v~d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~---- 365 (475)
.....++++|+ +.++++...++.|++|+..+|+.+..+. .+...+.+++|+| +..+++.
T Consensus 196 -------------~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 196 -------------SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp -------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred -------------CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 01118999998 7777777788999999998899888884 4567889999999 4333333
Q ss_pred ---eCCCeEEEEECCCCCceEEEEe---cCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 366 ---NQDKTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 366 ---s~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
..+.+|++||..+ ++.+..+. ++...+..++++|+|.++++...++.|++|++.
T Consensus 262 v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTCSCCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eccCCCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3455899999976 77777773 456678999999999888888889999999975
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-13 Score=126.84 Aligned_cols=249 Identities=6% Similarity=-0.040 Sum_probs=169.0
Q ss_pred CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeee
Q 011924 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT 228 (475)
Q Consensus 150 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 228 (475)
+.+|..++..+++....+..... .. .-+.....+++ .++++++...++.|.+||..+.+.....
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n----~~--------~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i--- 80 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN----GF--------KLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI--- 80 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH----SS--------CCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE---
T ss_pred CceEEEEECCCCEEhhhhHhhhc----Cc--------ccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEc---
Confidence 46788898887754332111000 00 00112456667 4455555666799999999876654222
Q ss_pred cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc------cEEeccCCceEEEEEEeecccceEE
Q 011924 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW------PVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 229 ~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~------~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
. .......+++ ++++ .++++...++.|.+||..+++....+.... ...
T Consensus 81 ~-~~~~p~~i~~--~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~---------------------- 134 (328)
T 3dsm_A 81 T-GFTSPRYIHF--LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE---------------------- 134 (328)
T ss_dssp E-CCSSEEEEEE--EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC----------------------
T ss_pred C-CCCCCcEEEE--eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc----------------------
Confidence 2 2345677877 8888 446665589999999999999887776433 334
Q ss_pred EEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC----------CeE
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD----------KTC 371 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d----------g~v 371 (475)
.+++ .+++++++.. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|
T Consensus 135 -------~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 135 -------QMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp -------CEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred -------eEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceE
Confidence 6677 3444444433 4789999999999988887743 345678999999977777654 789
Q ss_pred EEEECCCCCceEEEEecC-CCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-Eec-cCCCeEEEEEcCCCCeEE
Q 011924 372 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EID-FFGEISGISFSPDTESLF 448 (475)
Q Consensus 372 ~iwd~~~~~~~~~~~~~~-~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~-~~~~i~~l~fspdg~~l~ 448 (475)
.++|..+ .+....+... ......++|+|++++|+++.. .|.+||+.+++.... +.. ....+.+++++|++..|+
T Consensus 206 ~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 206 YRIDAET-FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp EEEETTT-TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEE
T ss_pred EEEECCC-CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEE
Confidence 9999976 6666566532 236789999999999988765 899999988765321 111 145789999999766676
Q ss_pred EEE
Q 011924 449 IGV 451 (475)
Q Consensus 449 ~~~ 451 (475)
++.
T Consensus 283 va~ 285 (328)
T 3dsm_A 283 VAD 285 (328)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=139.59 Aligned_cols=193 Identities=8% Similarity=-0.066 Sum_probs=137.9
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLL 306 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~ 306 (475)
+...+..++| ||+|+.++++.+..| .|++||+.+++..........+.
T Consensus 123 ~~~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-------------------------- 174 (710)
T 2xdw_A 123 GTVALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-------------------------- 174 (710)
T ss_dssp SCEEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC--------------------------
T ss_pred CCEEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc--------------------------
Confidence 3345777888 999998555554444 89999999988765332222234
Q ss_pred eeeeEEECCCCcEEEEEeCCCc----------------EEEEECCCCce--EEEee--cCCCCeEEEEEecCCCEEEEEe
Q 011924 307 CLQHSSQSPDGKLLIIVGDNPD----------------GLLVDSMTGKT--IASLC--GHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 307 ~i~~~~~sp~g~~l~~~~~dg~----------------i~iwd~~~~~~--~~~l~--~h~~~v~~~~~sp~g~~l~t~s 366 (475)
.++|+|||+.|+.++.++. |++|++.+++. ...+. .|...+..+.|+|+|++|+.++
T Consensus 175 ---~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 175 ---CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp ---CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred ---eEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence 7899999999999887765 99999988763 22333 3556688999999999998876
Q ss_pred C-----CCeEEEEECCC------CCceEEEEecCCCceEEEEEccCCCEEEEEcCC----CeEEEEECCCCe--eEEEEe
Q 011924 367 Q-----DKTCRIWDLRN------LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA----DFVHVYDVKSGY--EKEQEI 429 (475)
Q Consensus 367 ~-----dg~v~iwd~~~------~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d----g~i~iwd~~~~~--~~~~~~ 429 (475)
. +..|.+||+.. .......+..+...+.. .|+|+|+.|+..+.. ..|.+||+.++. ....+.
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence 5 56899999964 22245666666666654 589999988776653 369999998764 234455
Q ss_pred ccCC--CeEEEEEcCCCCeEEEEEecCC
Q 011924 430 DFFG--EISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 430 ~~~~--~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.+.. .+.+++|++++..+++...|+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 331 PEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp CCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred CCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 5543 6888999987777777776654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-14 Score=137.87 Aligned_cols=234 Identities=13% Similarity=0.005 Sum_probs=148.2
Q ss_pred cCcEEEEEecC---ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee
Q 011924 198 KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (475)
Q Consensus 198 ~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (475)
+|++|+..... ..|.+|++...... .+...+......+.| +|+|+. |+.++.++.|++|++.+++....+.
T Consensus 46 dG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~--spdg~~-l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 46 DGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFI--STDERA-FFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEE--CTTSSE-EEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceE--CCCCCE-EEEEEcCCcEEEEECCCCCcEEEEe
Confidence 88887766443 46888887654322 333333333333667 999997 7677788899999998887655554
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-----eCCCcEEEEECCCCceEEEeecCCCC
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-----GDNPDGLLVDSMTGKTIASLCGHLDF 349 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-----~~dg~i~iwd~~~~~~~~~l~~h~~~ 349 (475)
.+.. +++.+..++.. ..... .. .....+.|+|+++.++.+ ..+..|++||+.+++..... .+...
T Consensus 120 ~~~~--~~~~g~~l~~~-----~~~~~-~~-~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 120 VDEE--WKGYGTWVANS-----DCTKL-VG-IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp CCTT--EEEEEEEEECT-----TSSEE-EE-EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred cccc--cCCCCCEEEec-----cCCcc-cc-ccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 2222 22222222100 00000 00 000134689999887765 35668999999988765544 46778
Q ss_pred eEEEEEec-CCCEEEEEeCC------CeEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCC-----CeEE
Q 011924 350 SFASAWHP-NGVTFATGNQD------KTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPA-----DFVH 415 (475)
Q Consensus 350 v~~~~~sp-~g~~l~t~s~d------g~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~d-----g~i~ 415 (475)
+..+.|+| +++.|+..+.+ ..|.+||+.. +. ...+..+ ...+..++|+|+|++|+.++.+ +.|+
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 89999999 88877776643 3588888854 33 3333332 2357889999999988777543 4499
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEcC-CCCeEEEEEe
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFSP-DTESLFIGVW 452 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fsp-dg~~l~~~~~ 452 (475)
+||+.++...... ...+ .. +.|+| ||++|++++.
T Consensus 268 ~~d~~~g~~~~l~-~~~~-~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 268 KANPETLENEEVM-VMPP-CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EECTTTCCEEEEE-ECCS-EE-EEEECSSSSEEEEEEC
T ss_pred EEECCCCCeEEee-eCCC-CC-CCccCCCCceEEEecC
Confidence 9999887654332 2222 33 89999 9998887654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-11 Score=110.29 Aligned_cols=257 Identities=8% Similarity=-0.028 Sum_probs=168.5
Q ss_pred ceeEEecCCCeEEEec--CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 134 RNLVWATSKHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
+.+....+ ..+++.. ++.|..|+.. ++.... ... .....+.++++ ++.++++...++
T Consensus 18 ~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~-~~~----------------~~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 18 YGITVSDK-GKVWITQHKANMISCINLD-GKITEY-PLP----------------TPDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp EEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEE-ECS----------------STTCCEEEEEECTTSCEEEEETTTT
T ss_pred cceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEe-cCC----------------cccCceeeEEECCCCCEEEeCCCCC
Confidence 34444433 3455543 4678888876 443322 111 01134677887 677777766688
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~ 287 (475)
.|..|+.. .... ..........+..+++ .++|.. +++...++.|.+|+. +++...... ....+.
T Consensus 79 ~i~~~~~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~------- 144 (299)
T 2z2n_A 79 KIGRITKK-GIIK--EYTLPNPDSAPYGITE--GPNGDI-WFTEMNGNRIGRITD-DGKIREYELPNKGSYPS------- 144 (299)
T ss_dssp EEEEECTT-SCEE--EEECSSTTCCEEEEEE--CTTSCE-EEEETTTTEEEEECT-TCCEEEEECSSTTCCEE-------
T ss_pred eEEEECCC-CcEE--EEeCCCcCCCceeeEE--CCCCCE-EEEecCCceEEEECC-CCCEEEecCCCCCCCCc-------
Confidence 99999875 2221 1122223446778888 888864 666667889999998 544432211 123345
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEe
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
+++++++|++.++....+.|..||. +++.... +......+.+++++|+|++.++..
T Consensus 145 ----------------------~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 145 ----------------------FITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp ----------------------EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred ----------------------eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc
Confidence 8899999988887767788999998 6765442 333456788999999999777776
Q ss_pred CCCeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCC
Q 011924 367 QDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDT 444 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg 444 (475)
.++.|.+||. + +..... +......+.+++++++|+++++...++.|.+||. ++..... ...+...+.++++ ++|
T Consensus 202 ~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g 277 (299)
T 2z2n_A 202 IGNKIGRITT-S-GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGE 277 (299)
T ss_dssp TTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSS
T ss_pred CCceEEEECC-C-CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCC
Confidence 7889999998 4 443222 2334467889999999997777667789999998 4543222 2234467899999 888
Q ss_pred CeEEEE
Q 011924 445 ESLFIG 450 (475)
Q Consensus 445 ~~l~~~ 450 (475)
...++.
T Consensus 278 ~l~v~~ 283 (299)
T 2z2n_A 278 TIWFAM 283 (299)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 755554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-11 Score=116.01 Aligned_cols=231 Identities=11% Similarity=0.047 Sum_probs=154.9
Q ss_pred ceeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 134 RNLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 134 r~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
..++|.+..+.++++ .++.|..|+..++ . ..+.. ....+.++++ +++++++...++
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~~------------------~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEMH------------------PSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEES------------------SCSSEEEEEECTTCCEEEEETTTT
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEEC------------------CCCCcceeeECCCCcEEEEecCCC
Confidence 456677777756554 4578999998766 2 22211 1124677887 677777776678
Q ss_pred eEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEE----e-------------CCCeEEEEECCCCeeee
Q 011924 210 ELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTAS----N-------------NDCGVRDFDMGKYQLSK 271 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~----s-------------~dg~v~iwd~~~~~~~~ 271 (475)
.|.+|+..+............ ....++.+++ +|+|+. +++. + ..+.|..++.. ++...
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCL--APDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA 166 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEE--CTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCE-EEECCccccccccccccccccCCCcEEEEECCC-CCEEE
Confidence 999999865553321111111 1223567888 999974 6652 2 13455555554 44433
Q ss_pred eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC-CCce---EEEeecCC
Q 011924 272 HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKT---IASLCGHL 347 (475)
Q Consensus 272 ~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~---~~~l~~h~ 347 (475)
........+ .++|+|+|+.+++.+.++.|.+|++. +++. ...+..+.
T Consensus 167 ~~~~~~~~~-----------------------------gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 217 (296)
T 3e5z_A 167 PIRDRVKPN-----------------------------GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP 217 (296)
T ss_dssp EECCCSSEE-----------------------------EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS
T ss_pred eecCCCCCc-----------------------------cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC
Confidence 333444455 89999999999666778899999987 5554 33443455
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEE-ccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY-TSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
..+.+++++|+|++.++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +.-++.++..
T Consensus 218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp SCCCSEEEBTTSCEEEEE--TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred CCCCeEEECCCCCEEEEc--CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 667789999999876666 7889999985 667777877776 899999 68999999888764 6666776654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-11 Score=115.93 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=150.4
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 276 (475)
++.++++....+.|..|+....... .. .....+.++++ +++|+. +++. +..|.+||..+++........
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~---~~--~~~~~~~~i~~--~~dG~l-~v~~--~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ---RV--TMDAPVSSVAL--RQSGGY-VATI--GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE---EE--ECSSCEEEEEE--BTTSSE-EEEE--TTEEEEEETTTTEEEEEEECCT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE---EE--eCCCceEEEEE--CCCCCE-EEEE--CCeEEEEECCCCcEEEEEecCC
Confidence 3567777778899999998765432 11 22356888888 999983 4443 568999999887654333221
Q ss_pred ----ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC---------CcEEEEECC-CCceEEE
Q 011924 277 ----WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN---------PDGLLVDSM-TGKTIAS 342 (475)
Q Consensus 277 ----~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---------g~i~iwd~~-~~~~~~~ 342 (475)
..++ .++++|+|+++++.... ....||.+. .++.. .
T Consensus 94 ~~~~~~~~-----------------------------di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~ 143 (297)
T 3g4e_A 94 DKKNNRFN-----------------------------DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-K 143 (297)
T ss_dssp TCSSEEEE-----------------------------EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-E
T ss_pred CCCCCCCC-----------------------------CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-E
Confidence 1234 88999999977654321 233455444 24433 3
Q ss_pred eecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECC-CCCce-----EEEEecCCCceEEEEEccCCCEEEEEcCCCeEE
Q 011924 343 LCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLR-NLSES-----VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 415 (475)
Q Consensus 343 l~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~-~~~~~-----~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~ 415 (475)
+..+......++|+|+++.|+.+ +.++.|.+||+. ..+.. ...+....+.+..++++++|++.++....+.|.
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEE
Confidence 33344567899999999877554 557899999974 22332 222233345678999999999888777788999
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEEc-CCCCeEEEEEecC
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISFS-PDTESLFIGVWDR 454 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~fs-pdg~~l~~~~~D~ 454 (475)
+||..+++.+..+..+...+++++|. |+++.|++++...
T Consensus 224 ~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 224 RLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 99998898888877776789999998 8999998887643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-11 Score=117.79 Aligned_cols=242 Identities=8% Similarity=-0.030 Sum_probs=161.5
Q ss_pred CCeEEEec--CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCC
Q 011924 142 KHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD 217 (475)
Q Consensus 142 ~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~ 217 (475)
...+|.+. ++.|.+|+..+++....+... .....+++ ++.++++...++.|.+||+.
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-------------------~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-------------------TSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-------------------SSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-------------------CCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 45566653 478999999888775544210 12345555 56444444489999999988
Q ss_pred CCCceEEEeeec--CCCCceeEEEEEeCCCCCeEEEEEe-CCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEe
Q 011924 218 RPGVSFCSRTTY--DDNAITNAVEIYGSPSGAVHFTASN-NDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLL 294 (475)
Q Consensus 218 ~~~~~~~~~~~~--~~~~~v~~l~~~~s~~g~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~ 294 (475)
+.........-. ........+++ ++..++++.. .++.|.++|+.+++.+..+.......
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~----~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~-------------- 175 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQ----YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT-------------- 175 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEE----ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC--------------
T ss_pred CCeEEEEEEcCCccccCCCcceEEE----ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc--------------
Confidence 665442222111 00113445655 3445455554 48899999999999888776544445
Q ss_pred ecccceEEEEeeeeeeEEECCCCcEEEEEeCC----------CcEEEEECCCCceEEEeecC-CCCeEEEEEecCCCEEE
Q 011924 295 NFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN----------PDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFA 363 (475)
Q Consensus 295 d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----------g~i~iwd~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~ 363 (475)
.++++|+|++++++..+ +.|.++|..+++....+... ......++|+|++++|+
T Consensus 176 ---------------~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 176 ---------------SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp ---------------CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred ---------------ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence 78899999977776544 78999999999887777532 23688999999999998
Q ss_pred EEeCCCeEEEEECCCCCceEE--EEecCCCceEEEEEcc-CCCEEEEE----cCCCeEEEEECCCCeeEEEEeccCCCeE
Q 011924 364 TGNQDKTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTS-DGRYMATA----EPADFVHVYDVKSGYEKEQEIDFFGEIS 436 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~sp-dg~~la~~----~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 436 (475)
++.. +|.+||..+ ++... .+.........++++| +++++++. ..++.|.+||.. ++.+..+.. .....
T Consensus 241 v~~~--~v~~~d~~t-~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~ 315 (328)
T 3dsm_A 241 WINN--DIWRMPVEA-DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPG 315 (328)
T ss_dssp EESS--SEEEEETTC-SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEE
T ss_pred EEcc--EEEEEECCC-CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcc
Confidence 8865 899999965 33321 1221235678999999 55665665 567899999987 877766642 33445
Q ss_pred EEEE
Q 011924 437 GISF 440 (475)
Q Consensus 437 ~l~f 440 (475)
.++|
T Consensus 316 ~~~~ 319 (328)
T 3dsm_A 316 AFCW 319 (328)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5555
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-11 Score=116.84 Aligned_cols=233 Identities=13% Similarity=0.181 Sum_probs=156.3
Q ss_pred EEEEE--cCcEEEE-------EecCceEEEEeCCCCCceEEEe-eecCCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEE
Q 011924 193 STLAV--KDKLLVA-------GGFQGELICKHLDRPGVSFCSR-TTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRD 261 (475)
Q Consensus 193 ~~l~~--~~~~lvs-------g~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~i 261 (475)
.+++| ++.++++ +..++.|.+|+........... ....+...+..+.+ +++ |. ++++. ....|.+
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~--~~~~g~-l~v~~-~~~~l~~ 96 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC--DRDANQ-LFVAD-MRLGLLV 96 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE--CSSSSE-EEEEE-TTTEEEE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEE--ecCCCc-EEEEE-CCCCEEE
Confidence 46666 6777777 5778999999976555331110 00113345677877 888 65 34444 4457999
Q ss_pred EECCCCeeeee-eecc-----ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC---------
Q 011924 262 FDMGKYQLSKH-FRFP-----WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN--------- 326 (475)
Q Consensus 262 wd~~~~~~~~~-~~~~-----~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--------- 326 (475)
|+.. ++.... .... ..+. +++++|+|++.++...+
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~-----------------------------~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCN-----------------------------DCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCC-----------------------------EEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred EeCC-CCEEEEEeccCCCccccCCc-----------------------------CEEECCCCCEEEEecCcccccccccc
Confidence 9988 665433 2211 1234 88999999888776554
Q ss_pred ------CcEEEEECCCCceEEEeecCCCCeEEEEEe----cCCCEEEEE-eCCCeEEEEECCCCCc-----eEEEEecCC
Q 011924 327 ------PDGLLVDSMTGKTIASLCGHLDFSFASAWH----PNGVTFATG-NQDKTCRIWDLRNLSE-----SVAVLKGNL 390 (475)
Q Consensus 327 ------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~s----p~g~~l~t~-s~dg~v~iwd~~~~~~-----~~~~~~~~~ 390 (475)
+.|..|+.. ++.... ..+......++|+ |+++.++.+ ..++.|.+||....+. ....+..+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 567777765 554433 3344457889999 999766555 5678999999862232 222233333
Q ss_pred -CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEE
Q 011924 391 -GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 391 -~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~ 463 (475)
..+..++++++|+++++...++.|.+||..++..+..+..+...+.+++|+|+|+.|+++..+. +.+..+.
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~--~~l~~~~ 296 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN--NAVWKFE 296 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT--TEEEEEE
T ss_pred CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC--CeEEEEe
Confidence 5678999999999888877788999999887776666666667899999999999888776542 3455554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-12 Score=133.42 Aligned_cols=225 Identities=12% Similarity=0.003 Sum_probs=148.6
Q ss_pred eeEEEEEE--cCcEEEE-----EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCe----
Q 011924 190 TQVSTLAV--KDKLLVA-----GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG---- 258 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvs-----g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~---- 258 (475)
..+.+++| +|++|+. |+.+.+|++|++.+...... .... ......++| +|+|+. |+.++.+..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~~~~~~~~w--spDg~~-l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIE--GGKYATPKW--TPDSKG-FYYEWLPTDPSIK 194 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBS--CCTTCCCEE--CTTSSE-EEEEECCCCTTSC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccC--cccccceEE--ecCCCE-EEEEEecCCCCCc
Confidence 35777777 8998883 44456899999987653200 0111 111256788 999997 666667665
Q ss_pred ---------EEEEECCCCeee--eeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe
Q 011924 259 ---------VRDFDMGKYQLS--KHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG 324 (475)
Q Consensus 259 ---------v~iwd~~~~~~~--~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 324 (475)
|++|++.+++.. ..+. +...+. ++.|||+|++|++++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~-----------------------------~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL-----------------------------QSDLSRDGKYLFVYI 245 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE-----------------------------EEEECTTSCCEEEEE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE-----------------------------EEEECCCCCEEEEEE
Confidence 999999876521 2222 234555 889999999998887
Q ss_pred CCC----cEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCCc--eEEEEecC-CCceE
Q 011924 325 DNP----DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN---QDKTCRIWDLRNLSE--SVAVLKGN-LGAIR 394 (475)
Q Consensus 325 ~dg----~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s---~dg~v~iwd~~~~~~--~~~~~~~~-~~~v~ 394 (475)
.++ .|++|+..++. ...+..+...+....| |+|.+++++. .++.|.+||+.+... ....+..+ ...+.
T Consensus 246 ~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 246 LRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL 323 (695)
T ss_dssp EETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred eCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence 665 67778765554 4455556666777777 5666444444 257899999976321 13333333 44678
Q ss_pred EEEEccCCCEEEEEcCCCeEEEEECC-CCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEe
Q 011924 395 SIRYTSDGRYMATAEPADFVHVYDVK-SGYEKEQEIDF-FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 395 ~l~~spdg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~ 452 (475)
.++|+ ++.++++...++..+||.+. ++.....+..+ .+.+..++++|++..|+....
T Consensus 324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEc
Confidence 88888 67788888888887777554 35555555444 567888999999988875543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-12 Score=122.53 Aligned_cols=223 Identities=10% Similarity=0.025 Sum_probs=149.1
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
|.++++ ++..++..+.++.++.|. .. . ......+...+..++| +++|+ +++++..++.|.+||..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~--~~~g~-l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AE-P--WLEISKKGLQLEGLNF--DRQGQ-LFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CE-E--EEEEESSCCCEEEEEE--CTTSC-EEEEETTTCEEEEECTTTCCE
T ss_pred cceeeecCCccceeEEeecccCcccc---cc-e--eEEEeccCccccCcEE--CCCCC-EEEEECCCCEEEEEeCCCCcE
Confidence 334444 344455556677787772 11 1 2233344555688888 99997 477888889999999988776
Q ss_pred eeee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC----CcEEEEECCCCceEEEee
Q 011924 270 SKHF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN----PDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 270 ~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----g~i~iwd~~~~~~~~~l~ 344 (475)
.... .....+. +++++|+|+++++...+ +.|.+||..+++....+.
T Consensus 79 ~~~~~~~~~~~~-----------------------------~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 79 KRPFVSHKANPA-----------------------------AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp EEEEECSSSSEE-----------------------------EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred EEEeeCCCCCcc-----------------------------eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 5544 2445677 99999999988877666 689999998777654443
Q ss_pred --cCCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE-EcCCCeEE
Q 011924 345 --GHLDFSFASAWHPNGVTFATGNQ------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT-AEPADFVH 415 (475)
Q Consensus 345 --~h~~~v~~~~~sp~g~~l~t~s~------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~-~~~dg~i~ 415 (475)
.+...+.+++++|+|+++++... .+.|..||... ++ +..+......+..++|+|+|++|+. .+.++.|.
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence 24457899999999988877654 24566666543 23 3333333345789999999986654 45678999
Q ss_pred EEECCC-CeeEEE-----EeccC--CCeEEEEEcCCCCeEEEEEecC
Q 011924 416 VYDVKS-GYEKEQ-----EIDFF--GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 416 iwd~~~-~~~~~~-----~~~~~--~~i~~l~fspdg~~l~~~~~D~ 454 (475)
+||+.+ +..... ..... ..+.+++++++|+.+++...++
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~ 254 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG 254 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC
Confidence 999863 332211 11111 3678999999998766654444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-11 Score=121.86 Aligned_cols=217 Identities=14% Similarity=0.036 Sum_probs=152.8
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC--CCeeeeeeec
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG--KYQLSKHFRF 275 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~ 275 (475)
.+.++++...++.|.++|..+.+.... +.. ...+..+.+ +|+|++ +++++.++.|.+||+. +++.+..+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~--i~~--g~~p~~v~~--SpDGr~-lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTV--LDT--GYAVHISRL--SASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEE--EEC--SSCEEEEEE--CTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEE--EeC--CCCccceEE--CCCCCE-EEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 445677778899999999987765532 222 223557777 999997 6667799999999996 7777777765
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC----CCCcEEEEEe-CCCcEEEEECCCCceEEEeec-----
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS----PDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG----- 345 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s----p~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~----- 345 (475)
..... .++|+ |+|+++++++ ..+.+.++|..+.+++..+..
T Consensus 239 G~~P~-----------------------------~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 239 GSEAR-----------------------------SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp CSEEE-----------------------------EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred CCCCc-----------------------------eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 44455 88999 6999988876 458999999999998887652
Q ss_pred -----CC-CCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEE
Q 011924 346 -----HL-DFSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVY 417 (475)
Q Consensus 346 -----h~-~~v~~~~~sp~g~~l~t-~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iw 417 (475)
|. ..+..+..++++..++. ....|.|.++|....................+.|+|+|++++++. .++.|.++
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 11 25778888887665544 445799999999753322222222334567889999999876655 57899999
Q ss_pred ECCCCeeEEEEec-----cCCCeEEEEEcCCCCeEEEEE
Q 011924 418 DVKSGYEKEQEID-----FFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 418 d~~~~~~~~~~~~-----~~~~i~~l~fspdg~~l~~~~ 451 (475)
|+++++....+.. |.+.-..+ ++|++..+++.+
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~ 407 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATS 407 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred ECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeC
Confidence 9999987665543 33222222 588765555443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=114.56 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=151.7
Q ss_pred cceeEEecCCCeEEE-e--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEec
Q 011924 133 LRNLVWATSKHDVYL-M--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~-~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~ 207 (475)
...+.+..+.. +|+ . .++.|..|+..+..... +... ....+.++++ +++++++..
T Consensus 26 p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-~~~~-----------------~~~~p~~i~~~~~g~l~v~~~- 85 (270)
T 1rwi_B 26 PSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-LPFN-----------------GLYQPQGLAVDGAGTVYVTDF- 85 (270)
T ss_dssp EEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-CCCC-----------------SCCSCCCEEECTTCCEEEEET-
T ss_pred ccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-EeeC-----------------CcCCcceeEECCCCCEEEEcC-
Confidence 34454554443 666 4 34778888764433211 1110 0012345666 667666655
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCc
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYC 286 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~ 286 (475)
++.|.+|+....... ............+++ +++|. ++++...++.|.+|+..+........ ....+.
T Consensus 86 ~~~i~~~d~~~~~~~---~~~~~~~~~p~~i~~--~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~------ 153 (270)
T 1rwi_B 86 NNRVVTLAAGSNNQT---VLPFDGLNYPEGLAV--DTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD------ 153 (270)
T ss_dssp TTEEEEECTTCSCCE---ECCCCSCSSEEEEEE--CTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCC------
T ss_pred CCEEEEEeCCCceEe---eeecCCcCCCcceEE--CCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCce------
Confidence 889999997654322 122222345778888 89987 47776678899999765443222111 112334
Q ss_pred eEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe
Q 011924 287 IILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 287 ~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s 366 (475)
+++++|+|+++++...++.|.+|+...+........+...+.+++++|+|+++++..
T Consensus 154 -----------------------~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 154 -----------------------GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp -----------------------CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET
T ss_pred -----------------------eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC
Confidence 889999999777777778999999876665443333446789999999998777777
Q ss_pred CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
.++.|.+||... .........+...+.+++++|+|+++++...++.|++|++...+
T Consensus 211 ~~~~v~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 211 NTNQVVKLLAGS-TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTSCEEEECTTC-SCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCcEEEEcCCC-CcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 788999999864 33222222233568899999999988888889999999987543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-10 Score=109.28 Aligned_cols=218 Identities=13% Similarity=0.072 Sum_probs=153.0
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.+.++++ +++++++...++.|.+|+.. .... ..........+..+++ .++|.. +++...++.|..|+.. ++
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKIT--EYPLPTPDAKVMCLTI--SSDGEV-WFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--EEECSSTTCCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SC
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--EecCCcccCceeeEEE--CCCCCE-EEeCCCCCeEEEECCC-Cc
Confidence 5778888 67777666667899999987 3322 1222234456788888 899874 6666568889999986 33
Q ss_pred eeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE-ee
Q 011924 269 LSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LC 344 (475)
Q Consensus 269 ~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-l~ 344 (475)
. ..+. ....+. +++++|+|+++++...++.|.+||. +++.... +.
T Consensus 89 ~-~~~~~~~~~~~~~-----------------------------~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPY-----------------------------GITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp E-EEEECSSTTCCEE-----------------------------EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred E-EEEeCCCcCCCce-----------------------------eeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence 2 2232 122344 8899999988887777889999998 6654432 23
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
.+...+.+++++|+|++.++...++.|..||. + ++.... +......+..++++++|++.++...++.|.+||. ++.
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 34567899999999988887777889999998 4 443332 2334456889999999998777777889999998 665
Q ss_pred eEEE-EeccCCCeEEEEEcCCCCeEEE
Q 011924 424 EKEQ-EIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 424 ~~~~-~~~~~~~i~~l~fspdg~~l~~ 449 (475)
.... .......+.+++++++|+..++
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEe
Confidence 4332 1224467899999999984444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=126.48 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=131.9
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe-----------eeeeeeccccEEeccCCceEEEEEEeecccceEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-----------LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
.++.+++ ++.... +++|+.+ .+.+|++...+ .......+. |.
T Consensus 39 ~~nlLai--s~~~gl-l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~---------------------- 91 (388)
T 1xip_A 39 SLQNLDI--SNSKSL-FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI---------------------- 91 (388)
T ss_dssp CCBCEEE--ETTTTE-EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE----------------------
T ss_pred cccEEEE--cCCCCE-EEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-ee----------------------
Confidence 5788999 888875 7777776 56669875432 112333444 66
Q ss_pred EEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
+++| ++++|+++ .++.|++||+++......+..|...+.++.+.+. .+++++.||+|.+||+.+ +..
T Consensus 92 -------~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~-~~~ 158 (388)
T 1xip_A 92 -------FVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT-KST 158 (388)
T ss_dssp -------EEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-CCE
T ss_pred -------EEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC-Ccc
Confidence 9999 99999999 8899999999877766677778888888877654 388899999999999976 443
Q ss_pred EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee--EEEE------e---ccCCCeEEEEEcCCCCeEEEE
Q 011924 383 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--KEQE------I---DFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 383 ~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~l~fspdg~~l~~~ 450 (475)
.. +...|++++|||+| ++.|..||.+++|+...+.. ...+ . +|...|.++.|.+++.+|++=
T Consensus 159 ~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 159 KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 32 33579999999999 67888999999999887764 4444 1 256789999999999888763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-12 Score=132.60 Aligned_cols=225 Identities=11% Similarity=-0.034 Sum_probs=143.4
Q ss_pred EcCcEEEEEecCc-----eEEEEeCCCCCceEEEe---eecCCCCceeEEEEEeCCCCCeEEEEEe----CCCeEEEEEC
Q 011924 197 VKDKLLVAGGFQG-----ELICKHLDRPGVSFCSR---TTYDDNAITNAVEIYGSPSGAVHFTASN----NDCGVRDFDM 264 (475)
Q Consensus 197 ~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~---~~~~~~~~v~~l~~~~s~~g~~~l~s~s----~dg~v~iwd~ 264 (475)
.+|++++....++ .|.+.+........... ...+|...+..++| ||+|+.++++.+ .+..|++||+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEEC
Confidence 4777777665433 34444433332221110 11234446778888 999998555543 3468999999
Q ss_pred CCCeee-eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCc-------------EE
Q 011924 265 GKYQLS-KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPD-------------GL 330 (475)
Q Consensus 265 ~~~~~~-~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~-------------i~ 330 (475)
.+++.+ .......... .++|+|||+.|+.++.+.. |+
T Consensus 155 ~tg~~~~~~~~~~~~~~-----------------------------~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 155 DSGEWSKVDVIEGGKYA-----------------------------TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp TTCCBCSSCCBSCCTTC-----------------------------CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred CCCCCcCCcccCccccc-----------------------------ceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 998765 2111111113 7799999999999987765 99
Q ss_pred EEECCCCc----eEEEeecCCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 331 LVDSMTGK----TIASLCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 331 iwd~~~~~----~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
+|++.++. ++.....|...+.++.|+|+|++|+.++.++ .|.+|+... + ....+..+...+....+ |+|
T Consensus 206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g 282 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKD 282 (695)
T ss_dssp EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S-SCEEEEECSSCCEEEEE-ETT
T ss_pred EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C-ceEEeecCCCceEEEEe-cCC
Confidence 99998876 3333334556889999999999998887665 566666533 3 34555555556667767 666
Q ss_pred CEEEEEc---CCCeEEEEECCCCee--EEEEecc--CCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 403 RYMATAE---PADFVHVYDVKSGYE--KEQEIDF--FGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 403 ~~la~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
++++.+. .++.|.+||+.++.. ...+..+ ...+.+++|+ ++..+++...|+..
T Consensus 283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 6444443 257899999987642 2344433 3458889998 66666677766654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-11 Score=117.93 Aligned_cols=226 Identities=10% Similarity=0.048 Sum_probs=149.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCC
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~ 266 (475)
....|++ +++++++...++.|++|++...... .+..... ... ++| +++++. ++++..++ .|.+|+...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---~~~~~~~-~~~-ia~--~~~g~~-l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---TVHPGFK-GGK-PAV--TKDKQR-VYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---EEEETCC-BCB-CEE--CTTSSE-EEEEBSSTTCEEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---EeeccCC-CCc-eeE--ecCCCc-EEEEecCCCceEEEEEcCC
Confidence 4567777 6777777777899999998754433 2222222 223 777 999986 55555544 788888865
Q ss_pred Ceeeeee----e-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 267 YQLSKHF----R-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 267 ~~~~~~~----~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
+.....+ . ....+. +++++|++..|+++..++.|+.||..++....
T Consensus 204 ~~~~~~~g~~~~~~~~~p~-----------------------------~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~ 254 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIG-----------------------------AVALDETEEWLYFVDSNKNFGRFNVKTQEVTL 254 (409)
T ss_dssp TTCEEEEEECCTTSCSCCC-----------------------------BCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred CceeEEeeeccchhcCCcE-----------------------------EEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence 5433333 1 222334 88999954455557778899999998776432
Q ss_pred E----eecCCCCe-E-EEEEecC-CCEEEEEeCCCeEEEEECCCCCceEEEEecCC---------------CceEEEEEc
Q 011924 342 S----LCGHLDFS-F-ASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------------GAIRSIRYT 399 (475)
Q Consensus 342 ~----l~~h~~~v-~-~~~~sp~-g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~---------------~~v~~l~~s 399 (475)
. ..++.... . .++|+|+ +.++++-...++|+.|+... . +..+.++. .....++++
T Consensus 255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d 331 (409)
T 3hrp_A 255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331 (409)
T ss_dssp EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence 2 22222222 3 8999994 66666666788999999853 2 33343332 347899999
Q ss_pred cCCCEEEEEc-CCCeEEEEECCCCeeEEEEecc---------------CCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 400 SDGRYMATAE-PADFVHVYDVKSGYEKEQEIDF---------------FGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 400 pdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|+|+++++-+ .++.|+.|++.++.. ..+.++ ...+.+++++|+|..+++-..+..+.
T Consensus 332 ~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 332 EDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp TTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred CCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 9999777777 889999999888864 344433 34689999999976555555554443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-12 Score=116.82 Aligned_cols=170 Identities=10% Similarity=0.065 Sum_probs=137.4
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeccc--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFRFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN 326 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d 326 (475)
+|++++.++.|.+||.++++.+..+.... .+. +++++|+|++++ +.+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-----------------------------~~~~~pdG~ilv--s~~ 55 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-----------------------------SVAATKAGEILF--SYS 55 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-----------------------------EEEECTTSCEEE--ECB
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-----------------------------CeEECCCCCEEE--eCC
Confidence 58999999999999999999998888543 466 889999999888 356
Q ss_pred CcEEEEECCCCceEEEeecCC-CCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEec------CCCceEEEEE
Q 011924 327 PDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKG------NLGAIRSIRY 398 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~------~~~~v~~l~~ 398 (475)
+.|..||. +|+.+..+..+. ..+.++.+.|+|+++++.+. ++.|..+|. . ++.+..+.. +......+++
T Consensus 56 ~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~-Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 56 KGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-K-GEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp SEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-T-SCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred CCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-C-CCEEEEEeccCCCCcccccccCceE
Confidence 78999998 899999998653 57889999999999999887 778888876 3 666666542 1124556788
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.++|++|++...++.|..||.+ |+.+.++... +.+.++.+.++|+.|+++..++
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTS
T ss_pred CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCC
Confidence 9999999999999999999987 9888777653 4566788899999888775554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-10 Score=108.55 Aligned_cols=245 Identities=11% Similarity=-0.020 Sum_probs=162.1
Q ss_pred cCcEEEEEec--Cc---eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEE
Q 011924 198 KDKLLVAGGF--QG---ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFD 263 (475)
Q Consensus 198 ~~~~lvsg~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd 263 (475)
+++++++... .+ .|.++|..+.+.. ........+ .+.+ +|+|+.++++.. .++.|.+||
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---~~i~~g~~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSIL---GHVNGGFLP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEE---EEecCCCCC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 5555555432 22 7899998866543 222222222 7777 999998555542 367899999
Q ss_pred CCCCeeeeeeec-----------cccEEeccCCceEE--------EEEEeecccceEEEE-eeeeeeEEECCCC-cEEEE
Q 011924 264 MGKYQLSKHFRF-----------PWPVNVSSSYCIIL--------LCRLLNFMTEKVIIC-LLCLQHSSQSPDG-KLLII 322 (475)
Q Consensus 264 ~~~~~~~~~~~~-----------~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~-~~~i~~~~~sp~g-~~l~~ 322 (475)
..+.+.+..+.. +..+.++|+++.+. .+.++| .+++.... ...-.|+.+.|++ +.+++
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYL 182 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEE
Confidence 998887776542 44677999998774 467889 88887766 4433456666755 45566
Q ss_pred EeCCCcEEEEECCCCceEEEee-----cCCCCe-EEEEEecCCCEEEEEeCCCeEEEEECCCCC-ceEEEEec-------
Q 011924 323 VGDNPDGLLVDSMTGKTIASLC-----GHLDFS-FASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKG------- 388 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~~~~~~l~-----~h~~~v-~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~~------- 388 (475)
.+.+|.+.++|. +++.+.... ....++ ....+.+++..++..+..+.+.+.|+.... ..+..+..
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~ 261 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA 261 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence 678899999999 887764332 112222 234567766555555577899999986422 12222211
Q ss_pred ---CCCceEEEEEccCCCEEEEEcC----------CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEe
Q 011924 389 ---NLGAIRSIRYTSDGRYMATAEP----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 452 (475)
Q Consensus 389 ---~~~~v~~l~~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~ 452 (475)
.......++++|+++.|+++.. .+.|.++|+.+++.+..+. ..+...+++|+|||+ .|+++.+
T Consensus 262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcC
Confidence 1123445889999988877643 3579999999998887774 445689999999999 6777664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=129.20 Aligned_cols=229 Identities=8% Similarity=-0.073 Sum_probs=142.1
Q ss_pred EEEEcCcEEEEEecCce---EEEEeCCC-----CCceEEE---eeecCCCCceeEEEEEeCCCCCeEEEEEeCCC----e
Q 011924 194 TLAVKDKLLVAGGFQGE---LICKHLDR-----PGVSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----G 258 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~---i~vw~~~~-----~~~~~~~---~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg----~ 258 (475)
....+|++++....++. -.+|.... ....... .+..++...+..+.| ||+|+.++++.+..| .
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~--SPDG~~la~~~~~~G~e~~~ 190 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAA--SDDGRLLAYSVQDGGSDWRT 190 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEE--CTTSSEEEEEEEETTCSEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEE--CCCCCEEEEEEcCCCCceEE
Confidence 33468888776654432 44454432 2222100 012223335677788 999998555554434 5
Q ss_pred EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCc----------
Q 011924 259 VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPD---------- 328 (475)
Q Consensus 259 v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~---------- 328 (475)
|++||+.+++.+........+. .++|+|| +.|+.++.++.
T Consensus 191 i~v~dl~tg~~~~~~~~~~~~~-----------------------------~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 191 VKFVGVADGKPLADELKWVKFS-----------------------------GLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEETTTCCEEEEEEEEEESC-----------------------------CCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEEECCCCCCCCccCCCceec-----------------------------cEEEECC-CEEEEEEecCcccccccccCC
Confidence 9999999988754321111123 6789999 98888876543
Q ss_pred ----EEEEECCCCce--EEEee--cCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCce-EEEEecCCCceE
Q 011924 329 ----GLLVDSMTGKT--IASLC--GHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSES-VAVLKGNLGAIR 394 (475)
Q Consensus 329 ----i~iwd~~~~~~--~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~~-~~~~~~~~~~v~ 394 (475)
|++|++.++.. ...+. .+...+..+.|+|||++|+..+.++ .|.+||+...... ...+..+...+.
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW 320 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE
Confidence 88999887752 22333 2334688999999999998877544 8999999763112 555655555555
Q ss_pred EEEEccCCCEEEEEcC----CCeEEEEECCCC-eeEEEEe-ccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 395 SIRYTSDGRYMATAEP----ADFVHVYDVKSG-YEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 395 ~l~~spdg~~la~~~~----dg~i~iwd~~~~-~~~~~~~-~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
... +|+|+.|+..+. ++.|.+||+.++ .....+. .+...+.+++|+ ++..+++...|+..
T Consensus 321 ~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 321 DFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 553 589998888765 346999999875 2333343 344556778887 45556666666543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-09 Score=105.85 Aligned_cols=266 Identities=9% Similarity=-0.081 Sum_probs=166.9
Q ss_pred cCCCeEEEecC--C----eEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe-------
Q 011924 140 TSKHDVYLMSH--F----SVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG------- 206 (475)
Q Consensus 140 ~~~~~v~~~~~--~----~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~------- 206 (475)
++.+.+|.+.. . .|..++..+++....+... . .+=..++.++++|+++.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-----------------~-~p~i~~spDg~~lyv~n~~~~~~~ 91 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-----------------F-LPNPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-----------------C-CCCeEECCCCCEEEEEeccccccc
Confidence 44455555432 2 6788888776654332211 0 11124455888888875
Q ss_pred ---cCceEEEEeCCCCCceEEEeee-cCC---CCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeee-eeccc
Q 011924 207 ---FQGELICKHLDRPGVSFCSRTT-YDD---NAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKH-FRFPW 277 (475)
Q Consensus 207 ---~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~-~~~~~ 277 (475)
.++.|.++|..+.+......+. ... ...-..+.+ +|+|++++++... ++.|.++| .+++.+.. +..+.
T Consensus 92 rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~ 168 (373)
T 2mad_H 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT 168 (373)
T ss_pred cCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc
Confidence 3678999999765544222221 000 112235667 9999985555433 58899999 99998888 76655
Q ss_pred cEEeccCCceE-------EEEEEeecccceEEEEee----------eeeeEEECCCCcEEEEEeCCCcEEEEECCCCc--
Q 011924 278 PVNVSSSYCII-------LLCRLLNFMTEKVIICLL----------CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-- 338 (475)
Q Consensus 278 ~v~~s~~~~~l-------~~~~v~d~~~~~~~~~~~----------~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-- 338 (475)
.+.+.+.+... +.+.+++. +++...... ......+.+++..++..+..+.+.+.|+.++.
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence 55555544322 13455666 555442211 01234566666655555577899999987553
Q ss_pred eEEEeec----------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCCCCceEEEEecCCCceEEEEE
Q 011924 339 TIASLCG----------HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 339 ~~~~l~~----------h~~~v~~~~~sp~g~~l~t~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 398 (475)
.+..+.- .......++++|+++.++++.. .+.|.++|+.+ .+.+..+... ....+++|
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g-~~p~~i~~ 325 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLG-HDVDAISV 325 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECC-CCcCeEEE
Confidence 2222221 1223445789999988887654 35799999976 7777777643 35789999
Q ss_pred ccCCC-EEEEEc-CCCeEEEEECCCCeeEEEEe
Q 011924 399 TSDGR-YMATAE-PADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 399 spdg~-~la~~~-~dg~i~iwd~~~~~~~~~~~ 429 (475)
+|||+ .|+++. .++.|.+||+.+++.+..+.
T Consensus 326 s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~ 358 (373)
T 2mad_H 326 AQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCCEEeeec
Confidence 99999 777777 48999999999998887744
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-09 Score=101.74 Aligned_cols=258 Identities=10% Similarity=0.014 Sum_probs=167.5
Q ss_pred eeEEecCCCeEEEec--CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 135 NLVWATSKHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
.+..... ..+++.. ++.|..++.. ++... +.+.. ....+.++++ +++++++...++.
T Consensus 24 ~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 24 GITSSED-GKVWFTQHKANKISSLDQS-GRIKE-FEVPT----------------PDAKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp EEEECTT-SCEEEEETTTTEEEEECTT-SCEEE-EECSS----------------TTCCEEEEEECTTSCEEEEETTTTE
T ss_pred eeeECCC-CCEEEEcCCCCeEEEECCC-CceEE-EECCC----------------CCCcceeEEECCCCCEEEEecCCCe
Confidence 3333333 4466653 4788888866 44332 21110 1124667777 5677777666788
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee-ee-ccccEEeccCCceE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FR-FPWPVNVSSSYCII 288 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~s~~~~~l 288 (475)
|..++.. .... ..........+..+++ .++|.. +++...++.|..|+.. ++.... +. ....+.
T Consensus 85 v~~~d~~-g~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~-------- 149 (300)
T 2qc5_A 85 IGKLSKK-GGFT--EYPLPQPDSGPYGITE--GLNGDI-WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA-------- 149 (300)
T ss_dssp EEEECTT-SCEE--EEECSSTTCCEEEEEE--CSTTCE-EEEETTTTEEEEECTT-SCEEEEECSSTTCCEE--------
T ss_pred EEEECCC-CCeE--EecCCCCCCCCccceE--CCCCCE-EEEccCCCeEEEECCC-CCEEEccCCCCCCCce--------
Confidence 9999876 3322 1222223355778888 888874 6666667899999987 554321 11 123344
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEE-eecCCCCeEEEEEecCCCEEEEEeC
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-LCGHLDFSFASAWHPNGVTFATGNQ 367 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~t~s~ 367 (475)
++++.++|++.++...++.|..++. +++.... +..+...+.+++++|+|++.++...
T Consensus 150 ---------------------~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 207 (300)
T 2qc5_A 150 ---------------------FITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM 207 (300)
T ss_dssp ---------------------EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred ---------------------eEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC
Confidence 8899999997776666788999998 5655432 2234467899999999987777767
Q ss_pred CCeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE-EeccCCCeEEEEEcCCCC
Q 011924 368 DKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTE 445 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~fspdg~ 445 (475)
.+.|.+||. . +..... +......+.+++++++|++.++...++.|..||. ++..... .......+.+++++++|+
T Consensus 208 ~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 284 (300)
T 2qc5_A 208 GNKIGRITT-T-GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS 284 (300)
T ss_dssp TTEEEEECT-T-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC
T ss_pred CCEEEEEcC-C-CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC
Confidence 788999998 3 343332 3334457889999999997777766789999998 4543322 222345789999999987
Q ss_pred eEEEEEe
Q 011924 446 SLFIGVW 452 (475)
Q Consensus 446 ~l~~~~~ 452 (475)
. +++..
T Consensus 285 l-~v~~~ 290 (300)
T 2qc5_A 285 V-WFALK 290 (300)
T ss_dssp E-EEECS
T ss_pred E-EEEcc
Confidence 4 44443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-10 Score=122.43 Aligned_cols=223 Identities=15% Similarity=0.076 Sum_probs=146.6
Q ss_pred eEEEEEE--cCcEEEEEecC-----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC------
Q 011924 191 QVSTLAV--KDKLLVAGGFQ-----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC------ 257 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg------ 257 (475)
.+..++| +|++|+.+..+ .+|++|++.+..... ... +...+..++| +|+ +. |+.++.++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--~~~--~~~~~~~~~w--spD-~~-l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--DEL--KWVKFSGLAW--LGN-DA-LLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--EEE--EEEESCCCEE--STT-SE-EEEEECCCC-----
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--ccC--CCceeccEEE--ECC-CE-EEEEEecCcccccc
Confidence 5667777 89998877654 469999998766432 111 1111246778 999 87 44444544
Q ss_pred --------eEEEEECCCCee--eeeeec---cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe
Q 011924 258 --------GVRDFDMGKYQL--SKHFRF---PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG 324 (475)
Q Consensus 258 --------~v~iwd~~~~~~--~~~~~~---~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 324 (475)
.|++|++.+++. ...+.. +..+. .+.|||+|++|+..+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~-----------------------------~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH-----------------------------GASVSSDGRWVVITS 286 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE-----------------------------EEEECTTSCEEEEEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE-----------------------------EEEECCCCCEEEEEE
Confidence 388889876542 122221 12345 889999999988877
Q ss_pred CCC-----cEEEEECCCC--ceEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCC-CceEEEEecCCCc
Q 011924 325 DNP-----DGLLVDSMTG--KTIASLCGHLDFSFASAWHPNGVTFATGNQD----KTCRIWDLRNL-SESVAVLKGNLGA 392 (475)
Q Consensus 325 ~dg-----~i~iwd~~~~--~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d----g~v~iwd~~~~-~~~~~~~~~~~~~ 392 (475)
.++ .|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||+... ......+..+...
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 543 8999999877 41456666665565553 5889888887753 45999998653 2334444445556
Q ss_pred eEEEEEccCCCEEEEEcCCCeEEEEECC-CCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEe
Q 011924 393 IRSIRYTSDGRYMATAEPADFVHVYDVK-SGYEKEQEID-FFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~ 452 (475)
+..+.|+ ++.++++...++..+||.+. ++.....+.. ..+.+..+.++|++..|+....
T Consensus 366 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 366 LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 6677887 56677888888876666543 4555555443 3577899999999987775543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-10 Score=107.10 Aligned_cols=213 Identities=16% Similarity=0.082 Sum_probs=144.6
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc--
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-- 276 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-- 276 (475)
+.+++++...+.|..|+....... ... ....+.++.+ +++|+. +++. . ..|.+||..+++........
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~v~~i~~--~~dg~l-~v~~-~-~gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKT---VHA--LPFMGSALAK--ISDSKQ-LIAS-D-DGLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEE---EEE--CSSCEEEEEE--EETTEE-EEEE-T-TEEEEEETTTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEE---EEE--CCCcceEEEE--eCCCeE-EEEE-C-CCEEEEECCCCcEEEEeeCCCC
Confidence 556777778899999998754322 111 2346788888 889874 4443 3 45999999887654332211
Q ss_pred ---ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC------CCcEEEEECCCCceEEEeecCC
Q 011924 277 ---WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD------NPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 277 ---~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~------dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
..++ .++++|+|+++++... .+.|..++ +++.. .+..+.
T Consensus 131 ~~~~~~~-----------------------------~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 131 LPGNRSN-----------------------------DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp CTTEEEE-----------------------------EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred CCCCCCC-----------------------------CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 2344 8899999997765532 24566666 45543 333334
Q ss_pred CCeEEEEEecCCCEEEEE-eCCCeEEEEECC-CCC-c-----eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 348 DFSFASAWHPNGVTFATG-NQDKTCRIWDLR-NLS-E-----SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~-~~~-~-----~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
.....++|+|+++.++.+ +.++.|.+||+. ..+ . ....+......+..++++++|++.++...++.|.+||.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 457889999999877655 457899999985 123 2 12222233456778999999997777766788999997
Q ss_pred CCCeeEEEEeccCCCeEEEEEc-CCCCeEEEEEecC
Q 011924 420 KSGYEKEQEIDFFGEISGISFS-PDTESLFIGVWDR 454 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fs-pdg~~l~~~~~D~ 454 (475)
++..+..+..+...+.+++|+ |++..|++++...
T Consensus 259 -~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 259 -DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 566666666666679999998 9999888876654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-10 Score=103.23 Aligned_cols=219 Identities=10% Similarity=0.025 Sum_probs=152.3
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.+.++++ ++++.++...++.|.+++.. .... ..........+..+++ .++|.. +++...++.|..||.. ++
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~--~~~~~~~~~~~~~i~~--~~~g~l-~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK--EFEVPTPDAKVMCLIV--SSLGDI-WFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SC
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceE--EEECCCCCCcceeEEE--CCCCCE-EEEecCCCeEEEECCC-CC
Confidence 4667777 67777777678999999977 3322 1222233356778888 888874 6666567889999987 55
Q ss_pred eeeeeec---cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE-Eee
Q 011924 269 LSKHFRF---PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLC 344 (475)
Q Consensus 269 ~~~~~~~---~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~l~ 344 (475)
.. .+.. ...+. ++++.++|+++++...++.|..++.. ++... .+.
T Consensus 94 ~~-~~~~~~~~~~~~-----------------------------~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPY-----------------------------GITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp EE-EEECSSTTCCEE-----------------------------EEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred eE-EecCCCCCCCCc-----------------------------cceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence 43 3321 23445 88999999988877667889999987 65542 233
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEE-EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCe
Q 011924 345 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 423 (475)
Q Consensus 345 ~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~ 423 (475)
.....+.++++.|++++.++...++.|..||. . ++.... .......+..++++++|++.++....+.|.+|+. ++.
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-T-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECC-C-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 34567899999999997777666789999998 4 343332 2233456889999999988777777788999998 554
Q ss_pred eEEE-EeccCCCeEEEEEcCCCCeEEEE
Q 011924 424 EKEQ-EIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 424 ~~~~-~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
.... .......+.+++++++|+..++.
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEec
Confidence 3332 22345678999999999844443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-10 Score=105.95 Aligned_cols=236 Identities=8% Similarity=0.040 Sum_probs=150.2
Q ss_pred cceeEEecCCCeEEEe---------cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcE
Q 011924 133 LRNLVWATSKHDVYLM---------SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKL 201 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~---------~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~ 201 (475)
...+.|..+. .+|+. .++.|..|+..+++...+.. +.. ......+.++++ ++..
T Consensus 20 ~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------~~~--------~~~~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 20 AEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------PEV--------NGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp CEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------CEE--------TTEECCEEEEEECSSSSE
T ss_pred ccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe------ccc--------CCCCCCCceEEEecCCCc
Confidence 3455566444 45554 35789999877666543221 000 001124677888 4134
Q ss_pred EEEEecCceEEEEeCCCCCceEEEee-ec----CCCCceeEEEEEeCCCCCeEEEEEeCC---------------CeEEE
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRT-TY----DDNAITNAVEIYGSPSGAVHFTASNND---------------CGVRD 261 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~-~~----~~~~~v~~l~~~~s~~g~~~l~s~s~d---------------g~v~i 261 (475)
|..++..+.|.+|+.. .... .. .. .....++.+++ +++|.. +++...+ +.|..
T Consensus 85 l~v~~~~~~l~~~d~~-g~~~---~~~~~~~~~~~~~~~~~i~~--d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 85 LFVADMRLGLLVVQTD-GTFE---EIAKKDSEGRRMQGCNDCAF--DYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp EEEEETTTEEEEEETT-SCEE---ECCSBCTTSCBCBCCCEEEE--CTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred EEEEECCCCEEEEeCC-CCEE---EEEeccCCCccccCCcCEEE--CCCCCE-EEEecCcccccccccccccCCCCeEEE
Confidence 4444445578889987 3322 12 11 11234778888 999975 5555443 56777
Q ss_pred EECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC----CCCcEEEEE-eCCCcEEEEECC-
Q 011924 262 FDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS----PDGKLLIIV-GDNPDGLLVDSM- 335 (475)
Q Consensus 262 wd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s----p~g~~l~~~-~~dg~i~iwd~~- 335 (475)
|+.. ++............ .++++ |+|+.+.++ ..++.|.+|++.
T Consensus 158 ~~~~-g~~~~~~~~~~~~~-----------------------------~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~ 207 (314)
T 1pjx_A 158 FTTD-GQMIQVDTAFQFPN-----------------------------GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207 (314)
T ss_dssp ECTT-SCEEEEEEEESSEE-----------------------------EEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred ECCC-CCEEEeccCCCCcc-----------------------------eEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence 7765 44433333223344 78899 999766555 467889999976
Q ss_pred CCc-----eEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEE-E
Q 011924 336 TGK-----TIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT-A 408 (475)
Q Consensus 336 ~~~-----~~~~l~~h~-~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~-~ 408 (475)
+++ ....+.++. ..+..++++++|+++++...++.|.+||..+ ++.+..+..+...+.+++|+|+|+.|++ .
T Consensus 208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 454 223334443 5688999999999888888889999999864 4555666666678899999999995554 4
Q ss_pred cCCCeEEEEECCC
Q 011924 409 EPADFVHVYDVKS 421 (475)
Q Consensus 409 ~~dg~i~iwd~~~ 421 (475)
..++.|..|++..
T Consensus 287 ~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 287 HENNAVWKFEWQR 299 (314)
T ss_dssp TTTTEEEEEECSS
T ss_pred CCCCeEEEEeCCC
Confidence 5567899999864
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-10 Score=106.74 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=175.7
Q ss_pred ecCCCeEEEec------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe------
Q 011924 139 ATSKHDVYLMS------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG------ 206 (475)
Q Consensus 139 ~~~~~~v~~~~------~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~------ 206 (475)
.++.+.+|.+. .+.|...+..+.+....+... .. .. ..++.++++|+++.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG----------------~~-P~-va~spDG~~lyVan~~~~r~ 102 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----------------FL-PN-PVVADDGSFIAHASTVFSRI 102 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----------------SS-CE-EEECTTSSCEEEEEEEEEET
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC----------------CC-Cc-EEECCCCCEEEEEccccccc
Confidence 45566677753 357888898887765554431 01 12 34445888777665
Q ss_pred ----cCceEEEEeCCCCCceEEEeeecCC----CCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeeeeeccc
Q 011924 207 ----FQGELICKHLDRPGVSFCSRTTYDD----NAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 207 ----~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
.++.|.+||..+.+......+-.+. ...-..+.+ +|+|++++++... ++.|.++|+.+++.+.++..+.
T Consensus 103 ~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 3678999999887765333221100 112345777 9999985555433 6899999999999988886433
Q ss_pred cE-----------EeccCCceEEEEEEeeccc-ceEEEEee--------ee-eeEEEC-CCCcEEEEEeCCCcEEEEECC
Q 011924 278 PV-----------NVSSSYCIILLCRLLNFMT-EKVIICLL--------CL-QHSSQS-PDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 278 ~v-----------~~s~~~~~l~~~~v~d~~~-~~~~~~~~--------~i-~~~~~s-p~g~~l~~~~~dg~i~iwd~~ 335 (475)
.. .++++|..+ +.+... ++...... .+ ...+|. ++|++++ .+.+|.+++.|+.
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~----~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLA----KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEE----EEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred cceeecCCCceeEEECCCCCEE----EEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 22 233443322 223332 22211111 11 124553 6776555 5568999999987
Q ss_pred CCce--EEEee---------c-CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCCCCceEEEEecCCCce
Q 011924 336 TGKT--IASLC---------G-HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAI 393 (475)
Q Consensus 336 ~~~~--~~~l~---------~-h~~~v~~~~~sp~g~~l~t~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~v 393 (475)
++.. +..+. + ..+....++++|+++.++.... ..+|-+.|+.+ .+.+..+... ..+
T Consensus 256 ~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg-~~~ 333 (386)
T 3sjl_D 256 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMG-HEI 333 (386)
T ss_dssp TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEE-EEE
T ss_pred CCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECC-CCc
Confidence 6542 22221 0 1223345778999988888753 25799999987 7777777653 367
Q ss_pred EEEEEccCCC-EEEEE-cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 394 RSIRYTSDGR-YMATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 394 ~~l~~spdg~-~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
.+++++|||+ +|+++ ..++.|.++|..+++.+..+. ..+....|.+++|
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~-~~~~p~~l~~s~d 384 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN-QLGHGPQVITTAD 384 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC-CCCSSCCEEEECC
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec-CCCCCceeEECCc
Confidence 8999999997 66664 458999999999998877765 3466677888877
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-10 Score=107.97 Aligned_cols=246 Identities=14% Similarity=0.064 Sum_probs=166.0
Q ss_pred cCcEEEEEec-----CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEE
Q 011924 198 KDKLLVAGGF-----QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFD 263 (475)
Q Consensus 198 ~~~~lvsg~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd 263 (475)
+++.+++... ++.|.+.|..+.+....... +. .+ .+.+ +|+|+.++++.+ .++.|.+||
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~-~P--~va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GF-LP--NPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CS-SC--EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CC-CC--cEEE--CCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 6666666644 68999999987665532222 22 23 3777 999998555542 467899999
Q ss_pred CCCCeeeeeee-----------ccccEEeccCCceEE--------EEEEeecccceEEEEeeeeeeEEECC-CCcEEEEE
Q 011924 264 MGKYQLSKHFR-----------FPWPVNVSSSYCIIL--------LCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIV 323 (475)
Q Consensus 264 ~~~~~~~~~~~-----------~~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~ 323 (475)
..+.+.+..+. .+..+.|+++++.+. .+.++|..+++.+..+..-.|..+.| ..+.+++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99999888764 356688999999774 57899999999887765322333334 45667777
Q ss_pred eCCCcEEEEECCC-CceEEEeecC----CCCeE-EEEEe-cCCCEEEEEeCCCeEEEEECCCCC-ceEEEEe--------
Q 011924 324 GDNPDGLLVDSMT-GKTIASLCGH----LDFSF-ASAWH-PNGVTFATGNQDKTCRIWDLRNLS-ESVAVLK-------- 387 (475)
Q Consensus 324 ~~dg~i~iwd~~~-~~~~~~l~~h----~~~v~-~~~~s-p~g~~l~t~s~dg~v~iwd~~~~~-~~~~~~~-------- 387 (475)
+.||.+.+.++.+ ++.......+ ..+++ ...|. ++|++++ .+.+|+|.+.|+.... ..+..+.
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence 8899999999875 6654322212 12232 24665 5776555 5568999999996422 1222221
Q ss_pred -c-CCCceEEEEEccCCCEEEEEcC----------CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEe
Q 011924 388 -G-NLGAIRSIRYTSDGRYMATAEP----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 452 (475)
Q Consensus 388 -~-~~~~v~~l~~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~ 452 (475)
+ ..+....++++|+++.|+.+.. .+.|.++|+++++.+..+.. ..++.+|+|+||++ +|+++.+
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence 0 1123345788999988877642 35799999999988877653 34788999999997 6776644
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-10 Score=107.21 Aligned_cols=220 Identities=13% Similarity=0.020 Sum_probs=145.0
Q ss_pred EEEE--cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 194 TLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 194 ~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
...| +++ +++++..++.|..|+.. .+ . ..+......++.+++ +++|+. +++...++.|.+|+.. ++..
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~---~~~~~~~~~~~gl~~--d~dG~l-~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V---DVLLDATAFTNGNAV--DAQQRL-VHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETT-SC-E---EEEEESCSCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SCEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E---EEEeCCCCccceeeE--CCCCCE-EEEECCCCEEEEECCC-CCEE
Confidence 4555 666 67788888999999873 33 2 222234556788888 999973 6655556789999986 5432
Q ss_pred eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE----EeC-------------CCcEEEEE
Q 011924 271 KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII----VGD-------------NPDGLLVD 333 (475)
Q Consensus 271 ~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~----~~~-------------dg~i~iwd 333 (475)
..........+ ..+..++++|+|++.++ +.. .+.|+.+|
T Consensus 120 ~~~~~~~~~~~------------------------~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 120 LLVGRYAGKRL------------------------NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp EEECEETTEEC------------------------SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred EEEeccCCCcc------------------------CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 22211111110 01117899999998876 321 25678888
Q ss_pred CCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCCCce--EEEE-ecCCCceEEEEEccCCCE
Q 011924 334 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRNLSES--VAVL-KGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d------g~v~iwd~~~~~~~--~~~~-~~~~~~v~~l~~spdg~~ 404 (475)
..+++..... .......++|+|+++.|+.+... +.|.+|++.. ... ...+ ....+....++++++|++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD-GALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-TEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-CCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 7777654433 34567889999999988877665 6899999864 221 1111 112344567899999994
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
. ++..+ .|.+|+. +++.+..+.... .+.+++|+|+++.|++++.+
T Consensus 253 w-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 253 W-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp E-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred E-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 4 44444 4999997 566666665444 58999999999999998875
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=118.17 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=121.8
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCc-------eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEE
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~i 261 (475)
++..|++ ..+++++|+.++ +++|++..... .+.......+.+ |.+|+| +++. |+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~-L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQ-VLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTE-EEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCE-EEEE-cCCcEEE
Confidence 4556666 788899998875 55698643220 011111223455 888888 7776 6666 8899999
Q ss_pred EECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE
Q 011924 262 FDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 340 (475)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 340 (475)
||+.+........ +..++. ++.+.+. .+++++.||.+.+||+.++...
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~-----------------------------~i~~~~p--~~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVF-----------------------------QLKNVNN--TLVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp EESSSTTCEEEEEECSSCEE-----------------------------EEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred EEchhhhccCccceeeccee-----------------------------eEEecCC--CEEEEECCCCEEEEEccCCccc
Confidence 9997755433332 455566 6665543 3888899999999999988765
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce--EEEE------e---cCCCceEEEEEccCCCEEEE
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES--VAVL------K---GNLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~--~~~~------~---~~~~~v~~l~~spdg~~la~ 407 (475)
. +...|.|++|||+| ++.|..||++++|+... ... ..++ . +|...|.++.|.+++.+|++
T Consensus 160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp E----EEESEEEEEECSSE--EEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 3 34579999999999 78899999999998865 443 5556 2 35678999999999998886
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-10 Score=109.24 Aligned_cols=276 Identities=10% Similarity=0.003 Sum_probs=173.1
Q ss_pred CCCeEEEecC------CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe--------
Q 011924 141 SKHDVYLMSH------FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG-------- 206 (475)
Q Consensus 141 ~~~~v~~~~~------~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~-------- 206 (475)
+.+.+|.+.. +.|...+..+.+....+.... .+=..++.++++|+++.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~------------------~Pgia~SpDgk~lyVan~~~~~~~~ 144 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF------------------LPHPVAAEDGSFFAQASTVFERIAR 144 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS------------------SCEEEECTTSSCEEEEEEEEEETTE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC------------------CCceEECCCCCEEEEEecccccccc
Confidence 3455666533 578889988887766554421 12123444888777765
Q ss_pred --cCceEEEEeCCCCCceEEEeee-cCC---CCceeEEEEEeCCCCCeEEEEEeC-CCeEEEEECCCCeeeeeeecccc-
Q 011924 207 --FQGELICKHLDRPGVSFCSRTT-YDD---NAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFRFPWP- 278 (475)
Q Consensus 207 --~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~l~~~~s~~g~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~- 278 (475)
.++.|.++|..+.+......+- ... ...-..+.+ +|+|++++++... +++|.+.|+.+++.+..+..+..
T Consensus 145 G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~ 222 (426)
T 3c75_H 145 GKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY 222 (426)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce
Confidence 4678999999887765333321 000 112345667 9999985555433 68999999999999888775332
Q ss_pred ----------EEeccCCceEEEEEEeecccceEEEEe---e------eeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 279 ----------VNVSSSYCIILLCRLLNFMTEKVIICL---L------CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 279 ----------v~~s~~~~~l~~~~v~d~~~~~~~~~~---~------~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
+.+++++..+. .+..+++..... . ....+.+++++..++..+..+.+.+.|...+..
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~----V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLAR----VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEE----EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred eeccCCCcEEEEEcCCCCEEE----EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 22334443221 122222221110 0 011456799988888888889999999865542
Q ss_pred E--EEeec----------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCCCCceEEEEecCCCceEEEE
Q 011924 340 I--ASLCG----------HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIR 397 (475)
Q Consensus 340 ~--~~l~~----------h~~~v~~~~~sp~g~~l~t~s~----------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~ 397 (475)
. ..+.- .......++++|+++.+++... .++|.+.|+.+ .+.+..+.... ....++
T Consensus 299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~-~P~gia 376 (426)
T 3c75_H 299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGH-EIDSIN 376 (426)
T ss_dssp EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEE-EECEEE
T ss_pred EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCC-CcCeEE
Confidence 2 11110 0112223789999888777653 35799999987 77777776433 477999
Q ss_pred EccCCC-EEEEEc-CCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 398 YTSDGR-YMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 398 ~spdg~-~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
|+|||+ +|+++. .++.|.|+|+.+++.+.++..-. .-..+..+||
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG-~~P~~i~~~~ 423 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLG-RGPQIITTHD 423 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCS-SSCCEEECCC
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCC-CCCcEEEcCC
Confidence 999999 888887 58999999999999888763222 2222555654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-09 Score=99.17 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=143.2
Q ss_pred eeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 135 NLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 135 ~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+|......||++ ....|..|+..++... .+.. ...+.++++ +++++++ . ++.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-------------------~~~~~~i~~~~dG~l~v~-~-~~~ 74 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-------------------DAPVSSVALRQSGGYVAT-I-GTK 74 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-------------------SSCEEEEEEBTTSSEEEE-E-TTE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-------------------CCceEEEEECCCCCEEEE-E-CCe
Confidence 45677777777775 3578999998776542 2221 124677888 6775544 4 567
Q ss_pred EEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEE-eC--------CCeEEEEECCC-CeeeeeeeccccE
Q 011924 211 LICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTAS-NN--------DCGVRDFDMGK-YQLSKHFRFPWPV 279 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~-s~--------dg~v~iwd~~~-~~~~~~~~~~~~v 279 (475)
|.+|+..+............ ....++.+.+ +|+|+. +++. .. ...-.+|.+.. ++...........
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~--d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p 151 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKV--DPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS 151 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEE--CTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEE--CCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence 99999875543321111111 1234677888 999985 4443 22 12334554432 3333222222334
Q ss_pred EeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEEC--CCCceE-----EEeecCCCCeE
Q 011924 280 NVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDS--MTGKTI-----ASLCGHLDFSF 351 (475)
Q Consensus 280 ~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~--~~~~~~-----~~l~~h~~~v~ 351 (475)
+ .++|+|+++.|+++ +..+.|.+|++ .+|... ..+..+...+.
T Consensus 152 n-----------------------------gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~ 202 (297)
T 3g4e_A 152 N-----------------------------GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD 202 (297)
T ss_dssp E-----------------------------EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE
T ss_pred c-----------------------------ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC
Confidence 4 88999999877554 55788999987 456432 22333445688
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc-cCCCEEEEEcC
Q 011924 352 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT-SDGRYMATAEP 410 (475)
Q Consensus 352 ~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~la~~~~ 410 (475)
.+++.++|++.++....+.|.+||..+ ++.+..+..+...+++++|. |+++.|++++.
T Consensus 203 g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 203 GMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred eeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 999999999888888888999999975 77888888776789999998 89887766554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-10 Score=110.42 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=164.6
Q ss_pred cCcEEEEEec-C----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEE
Q 011924 198 KDKLLVAGGF-Q----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFD 263 (475)
Q Consensus 198 ~~~~lvsg~~-d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd 263 (475)
+++.+++... . +.|.++|..+.+......+ +. .+ .+.+ +|+|+.++++.. .++.|.++|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G~-~P--gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--GF-LP--HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--CS-SC--EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--CC-CC--ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 5555554433 2 7999999988776533332 22 23 6777 999998666543 467899999
Q ss_pred CCCCeeeeeeec-----------cccEEeccCCceEE--------EEEEeecccceEEEEeeeeeeEEECCCC-cEEEEE
Q 011924 264 MGKYQLSKHFRF-----------PWPVNVSSSYCIIL--------LCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIV 323 (475)
Q Consensus 264 ~~~~~~~~~~~~-----------~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~ 323 (475)
..+++.+..+.. +..+.|+++++.+. .+.+.|..+++.+..+..-.+....|+| +.+++.
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN 235 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence 999998877652 45677999998774 4678888888877665432233444533 555666
Q ss_pred eCCCcEEEEECCCCceEEEe----ecCCCCe-EEEEEecCCCEEEEEeCCCeEEEEECCCCCce-EEEEec---------
Q 011924 324 GDNPDGLLVDSMTGKTIASL----CGHLDFS-FASAWHPNGVTFATGNQDKTCRIWDLRNLSES-VAVLKG--------- 388 (475)
Q Consensus 324 ~~dg~i~iwd~~~~~~~~~l----~~h~~~v-~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~-~~~~~~--------- 388 (475)
+.+|.+.+.++.+++..... .....++ ..+.+.|++..++..+..++|.+.|+...... +..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 77888888888666554322 1111222 23567888888888788899999998642111 111110
Q ss_pred -CCCceEEEEEccCCCEEEEEcC----------CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCC-eEEEEEe
Q 011924 389 -NLGAIRSIRYTSDGRYMATAEP----------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 452 (475)
Q Consensus 389 -~~~~v~~l~~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~-~l~~~~~ 452 (475)
.......++++|+|+.|+++.. .+.|.++|+.+.+.+..+.. .....+++|+|||+ +|+++.+
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~ 390 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSA 390 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEET
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcC
Confidence 0112224789999987777642 35799999999988877753 34688999999999 8888875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-10 Score=107.82 Aligned_cols=229 Identities=13% Similarity=0.005 Sum_probs=148.3
Q ss_pred eEEEEEE--cCcEEEEEe--cCceEEEEeCCCCCceEEE----eeecCCCCceeEEEEEeCCCCCeEEEEEeC-----CC
Q 011924 191 QVSTLAV--KDKLLVAGG--FQGELICKHLDRPGVSFCS----RTTYDDNAITNAVEIYGSPSGAVHFTASNN-----DC 257 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~--~dg~i~vw~~~~~~~~~~~----~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-----dg 257 (475)
....+++ +|+++++.. .+|.++||.+. .+..... .....+-..+..+++ +++|+. +++... +.
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~--d~~g~L-~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKS--DGNGIV-WMLDNGNQSKSVP 93 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEE--CSSSEE-EEEECHHHHTSCC
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEE--cCCCcE-EEEcCCCCcCCCC
Confidence 4567777 677888753 23435566665 2222100 001123456788888 998863 555433 57
Q ss_pred eEEEEECCCCeeeeeeeccc-------cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE-EEEe---CC
Q 011924 258 GVRDFDMGKYQLSKHFRFPW-------PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL-IIVG---DN 326 (475)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~~~-------~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~---~d 326 (475)
.|.+||+.+++.+..+..+. .++ .++++|++..+ ++-. .+
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-----------------------------~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVN-----------------------------DLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCC-----------------------------EEEEETTTTEEEEEECCSGGG
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccc-----------------------------eEEEecCCCEEEEEcCccCCC
Confidence 89999999998877766432 223 88999865444 4444 57
Q ss_pred CcEEEEECCCCceEEEeecCC-----------------------------CCeEEEEEecCCCEEEEEeCCC-eEEEEEC
Q 011924 327 PDGLLVDSMTGKTIASLCGHL-----------------------------DFSFASAWHPNGVTFATGNQDK-TCRIWDL 376 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~-----------------------------~~v~~~~~sp~g~~l~t~s~dg-~v~iwd~ 376 (475)
+.|.+||+.+++....+.+|. ..+..++|+|+|+.|+.+...+ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 889999999888776665431 2357899999999998887766 4444443
Q ss_pred CC--CCc--------eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCC
Q 011924 377 RN--LSE--------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTE 445 (475)
Q Consensus 377 ~~--~~~--------~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~ 445 (475)
.. ... .+. ..++.+....++++++|+++++...++.|.+||.++++....... ....+.+++|+++|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 10 000 011 112334556899999999999998899999999856754333322 245689999999988
Q ss_pred eEEEEEec
Q 011924 446 SLFIGVWD 453 (475)
Q Consensus 446 ~l~~~~~D 453 (475)
.+++....
T Consensus 304 l~v~~~~~ 311 (343)
T 2qe8_A 304 LYFDCNQL 311 (343)
T ss_dssp EEEEECCG
T ss_pred EEEEeCcc
Confidence 76666544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-08 Score=95.46 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=139.8
Q ss_pred ceeEEecCCCeEEEec--CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 134 RNLVWATSKHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
....|.+....+|++. .+.|..|+..+++... +.. ...+.++++ +++++++ +.+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~dg~l~v~-~~~- 109 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISDSKQLIA-SDD- 109 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEETTEEEEE-ETT-
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCCCeEEEE-ECC-
Confidence 3456777666777753 5788899877654322 211 124677777 6666654 444
Q ss_pred eEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeC------CCeEEEEECCCCeeeeeeeccccEEec
Q 011924 210 ELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNN------DCGVRDFDMGKYQLSKHFRFPWPVNVS 282 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~v~~s 282 (475)
.|.+|+............... ....++.+.+ +|+|+. +++... .+.|..++ +++...........+
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~-- 182 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRM--HPSGAL-WIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPN-- 182 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE--CTTSCE-EEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEE--
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEE--CCCCCE-EEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccC--
Confidence 488999876553321111111 1235778888 999985 444432 24555555 454433222223344
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECC--CC-ce-----EEEeecCCCCeEEE
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSM--TG-KT-----IASLCGHLDFSFAS 353 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~--~~-~~-----~~~l~~h~~~v~~~ 353 (475)
.++|+|+|+.++++ +.++.|.+|++. +| +. ...+......+..+
T Consensus 183 ---------------------------~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi 235 (326)
T 2ghs_A 183 ---------------------------SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGS 235 (326)
T ss_dssp ---------------------------EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEE
T ss_pred ---------------------------CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCee
Confidence 88999999877655 456889999986 56 31 22333344567889
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc-cCCCEEEEEcCC
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT-SDGRYMATAEPA 411 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~la~~~~d 411 (475)
++.++|++.++...++.|.+||. . ++.+..+..+...+++++|+ |+++.|++++..
T Consensus 236 ~~d~~G~lwva~~~~~~v~~~d~-~-g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 236 VCDAEGHIWNARWGEGAVDRYDT-D-GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECTTSCEEEEEETTTEEEEECT-T-CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECCCCCEEEEEeCCCEEEEECC-C-CCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 99999998877777789999998 4 56677777666679999998 898877655443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-09 Score=101.93 Aligned_cols=223 Identities=10% Similarity=0.057 Sum_probs=145.6
Q ss_pred cCcEEE-EEecCceEEEEeCCCC-CceEEEeeec------C-CCCceeEEEEEeCCCCCeEEEEEeCC------CeEEEE
Q 011924 198 KDKLLV-AGGFQGELICKHLDRP-GVSFCSRTTY------D-DNAITNAVEIYGSPSGAVHFTASNND------CGVRDF 262 (475)
Q Consensus 198 ~~~~lv-sg~~dg~i~vw~~~~~-~~~~~~~~~~------~-~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~iw 262 (475)
++++|+ .|..++.|.++|+.+. ......++.. . ..+.-..+.. +|+| +++++..+ +.|.++
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~--~pdG--i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC--GPDA--IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE--CSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE--CCCe--EEEEcCCCcCCCCCCeEEEE
Confidence 455554 5667899999998633 2121122221 0 1112233444 8999 46665444 789999
Q ss_pred ECCCCeeeeeeecc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-----------------
Q 011924 263 DMGKYQLSKHFRFP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----------------- 324 (475)
Q Consensus 263 d~~~~~~~~~~~~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----------------- 324 (475)
|..+++.+.+.... .+..|. +.+-|+|+++.+++..
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~--------------------------Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLA--------------------------YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCC--------------------------CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred ECCCCeEEEEEccCCCCcccc--------------------------ceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 99999998888632 221110 0367899999888874
Q ss_pred --CCCcEEEEECCCCceEEEeecC-C-CCeEEEEE--ecCCCEEEEEe------CCCeEEEEECCCCCc--eEEEE--ec
Q 011924 325 --DNPDGLLVDSMTGKTIASLCGH-L-DFSFASAW--HPNGVTFATGN------QDKTCRIWDLRNLSE--SVAVL--KG 388 (475)
Q Consensus 325 --~dg~i~iwd~~~~~~~~~l~~h-~-~~v~~~~~--sp~g~~l~t~s------~dg~v~iwd~~~~~~--~~~~~--~~ 388 (475)
....|.+||+.+++.+.++..- . .....+.| +|+++++++++ .+++|.+|.... +. ....+ ..
T Consensus 224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~ 302 (462)
T 2ece_A 224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPA 302 (462)
T ss_dssp HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECC
T ss_pred hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCC
Confidence 3678999999999888888742 1 23455656 99999988887 456887776643 32 11111 11
Q ss_pred C----------------CCceEEEEEccCCCEEEEEcC-CCeEEEEECCC---CeeEEEEecc--------------CCC
Q 011924 389 N----------------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS---GYEKEQEIDF--------------FGE 434 (475)
Q Consensus 389 ~----------------~~~v~~l~~spdg~~la~~~~-dg~i~iwd~~~---~~~~~~~~~~--------------~~~ 434 (475)
. ......+.+||||++|.++.. .+.|.+||+.. .+.+.++... .+.
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 0 134678999999999988765 57999999853 3444443321 024
Q ss_pred eEEEEEcCCCCeEEEEE
Q 011924 435 ISGISFSPDTESLFIGV 451 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~ 451 (475)
...+.+||||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 68999999999999997
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-09 Score=113.05 Aligned_cols=193 Identities=9% Similarity=-0.022 Sum_probs=130.4
Q ss_pred CCceeEEEEEeCCCCCeEEEEEeCC----CeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeee
Q 011924 232 NAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLC 307 (475)
Q Consensus 232 ~~~v~~l~~~~s~~g~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~ 307 (475)
...+..++| ||+|+.++++.+.. ..|++||+.+++.+..........
T Consensus 128 ~~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~--------------------------- 178 (693)
T 3iuj_A 128 TTALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS--------------------------- 178 (693)
T ss_dssp CCEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC---------------------------
T ss_pred cEEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec---------------------------
Confidence 335667777 99999866554433 479999999988654311111112
Q ss_pred eeeEEECCCCcEEEEEeCCC-------------cEEEEECCCCce--EEEe--ec-CCCCeEEEEEecCCCEEEEEeC--
Q 011924 308 LQHSSQSPDGKLLIIVGDNP-------------DGLLVDSMTGKT--IASL--CG-HLDFSFASAWHPNGVTFATGNQ-- 367 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~dg-------------~i~iwd~~~~~~--~~~l--~~-h~~~v~~~~~sp~g~~l~t~s~-- 367 (475)
.++|+ ||+.|+.++.+. .|++|++.++.. ...+ .. |......+.|+|||++|+....
T Consensus 179 --~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 179 --GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp --CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred --cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 67899 999999887764 399999887653 2233 33 4556788999999998865443
Q ss_pred --CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC----CCeEEEEECCCCee--EEEEeccCCCeEEEE
Q 011924 368 --DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP----ADFVHVYDVKSGYE--KEQEIDFFGEISGIS 439 (475)
Q Consensus 368 --dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~ 439 (475)
...|.++|+.........+..+....... ++++|..|+..+. .+.|.++|+.++.. ...+..+...+. .
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~ 332 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T 332 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence 24899999976443566666666666555 6777765554443 36799999987653 245566665555 8
Q ss_pred EcCCCCeEEEEEecCCcceE
Q 011924 440 FSPDTESLFIGVWDRTYGSL 459 (475)
Q Consensus 440 fspdg~~l~~~~~D~~~~~l 459 (475)
|+|++++|+....+.....+
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EEEETTEEEEEEEETTEEEE
T ss_pred EEEECCEEEEEEEECCeeEE
Confidence 99999999887766544333
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=120.10 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=112.3
Q ss_pred EcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 011924 197 VKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 276 (475)
Q Consensus 197 ~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 276 (475)
++++.+++|+.+|.|++||..+.+....... +.+.+..+ ..++.. +++++.|+.|+.||..+++.+..+...
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~--~~~g~~-~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPT--HVEEPA-FLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-------CC-EEECTTTCCEEEC-----CCSEECSCC
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecce--EcCCCE-EEEeCCCCEEEEEECCCCceeeeeecc
Confidence 3788999999999999999988776654333 22333333 455654 777789999999999888876555422
Q ss_pred --ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 277 --WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 277 --~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
..+.. +..+. .+..+++++.++.++.||..+|+.+..+..+. ...
T Consensus 79 ~~~~~~~----------------------------sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~ 125 (369)
T 2hz6_A 79 IPELVQA----------------------------SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADS 125 (369)
T ss_dssp HHHHHTT----------------------------CSCC------CCCCEEEEEEEEECCC-------------------
T ss_pred Ccccccc----------------------------CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----ccc
Confidence 11110 11111 34567778888999999999999988777553 245
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC---CEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg---~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
++|++..+++++.++.|+.||.++ ++.+-.+... .....++++++ ..+++++.+|.|+.||.++|+.+.... .
T Consensus 126 ~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~ 201 (369)
T 2hz6_A 126 LSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-Y 201 (369)
T ss_dssp -------EEEEEEEEEEECCCSSS-SSCCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-C
T ss_pred ccccCCEEEEEecCCEEEEEECCC-CCEEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-C
Confidence 667888999999999999999987 5543333221 11233344432 456778889999999999998776655 3
Q ss_pred CCCeE-EEEEcCCCC
Q 011924 432 FGEIS-GISFSPDTE 445 (475)
Q Consensus 432 ~~~i~-~l~fspdg~ 445 (475)
.+++. ...++++|.
T Consensus 202 ~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 202 ASPVVAFYVWQREGL 216 (369)
T ss_dssp SSCEEEEEECTTSSC
T ss_pred CCceEEEEEecCCce
Confidence 44443 345566664
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-09 Score=111.26 Aligned_cols=222 Identities=16% Similarity=0.129 Sum_probs=143.7
Q ss_pred eEEEEEE--cCcEEEEE-----ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC------
Q 011924 191 QVSTLAV--KDKLLVAG-----GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC------ 257 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg------ 257 (475)
.+..++| +|++|+.+ +....|++||+.+...... .... .....++| + +|+. |+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~W--s-Dg~~-l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISW--L-GNEG-FFYSSYDKPDGSEL 201 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEE--E-TTTE-EEEEESSCCC----
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEE--e-CCCE-EEEEEecCcccccc
Confidence 5666667 88888843 3346799999987664321 1111 11245678 8 9987 55554553
Q ss_pred -------eEEEEECCCCee--eeeeecc----ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe
Q 011924 258 -------GVRDFDMGKYQL--SKHFRFP----WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG 324 (475)
Q Consensus 258 -------~v~iwd~~~~~~--~~~~~~~----~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 324 (475)
.|++|++.+.+. ...+... .... ++.|||+|++|+...
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-----------------------------~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-----------------------------GATVTEDDRFLLISA 252 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE-----------------------------EEEECTTSCEEEEEE
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE-----------------------------EEEEcCCCCEEEEEE
Confidence 489999876542 2222222 2244 788999999887654
Q ss_pred C----CCcEEEEECCCCc-eEEEeecCCCCeEEEEEecCCCEEE-EEeCC---CeEEEEECCCCCc-eEEEEecCCCceE
Q 011924 325 D----NPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFA-TGNQD---KTCRIWDLRNLSE-SVAVLKGNLGAIR 394 (475)
Q Consensus 325 ~----dg~i~iwd~~~~~-~~~~l~~h~~~v~~~~~sp~g~~l~-t~s~d---g~v~iwd~~~~~~-~~~~~~~~~~~v~ 394 (475)
. ...|+++|+.++. ....+..+....... |+|+|..|+ +.+.+ +.|.++|+.+... ....+..+...+.
T Consensus 253 ~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 331 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL 331 (693)
T ss_dssp ESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred ccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence 2 3589999998764 455666676666665 666665555 44443 5799999976322 1345555655554
Q ss_pred EEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEec
Q 011924 395 SIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 395 ~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.|+|++++|+....++ .|++|++..+.. ..+ ....+.+..+.++|++..|+....+
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 8999999888776544 799999875543 333 2345678888899999888876544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-08 Score=91.07 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=130.2
Q ss_pred ceeEEEEEeCCCCCeEEEEEeC--CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHS 311 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~ 311 (475)
....+.+ ++++ .++++.+. ++.|+++|+.+++.+..+..+.... . ..+
T Consensus 22 f~~Gl~~--~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-g--------------------------eGi 71 (266)
T 2iwa_A 22 FTQGLVY--AEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-G--------------------------EGL 71 (266)
T ss_dssp CEEEEEE--CSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-E--------------------------EEE
T ss_pred CcccEEE--eCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-e--------------------------EEE
Confidence 3578888 8886 44555543 6899999999999988876332211 0 033
Q ss_pred EECCCCcEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC
Q 011924 312 SQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390 (475)
Q Consensus 312 ~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~ 390 (475)
++. ++.|.++ -.++.+.++|..+++.+.++...... ...++|+|+.++++..+++|.++|..+ .+.+..+.-..
T Consensus 72 ~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~ 146 (266)
T 2iwa_A 72 TLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKY 146 (266)
T ss_dssp EEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEE
T ss_pred EEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECC
Confidence 443 4455444 46789999999999999988632122 234566888888887889999999977 56666665321
Q ss_pred -----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC-------------CCeEEEEEcCCCCeEEEEEe
Q 011924 391 -----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-------------GEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 391 -----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~i~~l~fspdg~~l~~~~~ 452 (475)
..++.+.|. +|+..+.....+.|.+.|+++++.+..+.-.. ....+|+|+|+++.|++++.
T Consensus 147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 135678888 77665666567899999999999887775321 35689999999999998874
Q ss_pred c
Q 011924 453 D 453 (475)
Q Consensus 453 D 453 (475)
.
T Consensus 226 ~ 226 (266)
T 2iwa_A 226 L 226 (266)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-08 Score=95.43 Aligned_cols=225 Identities=9% Similarity=0.050 Sum_probs=139.7
Q ss_pred ceeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc
Q 011924 134 RNLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG 209 (475)
Q Consensus 134 r~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg 209 (475)
...+|....+.|+++ .++.|..|+. +++...+... ...+..+++ +|+++++....+
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~-------------------~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDA-------------------TAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEES-------------------CSCEEEEEECTTSCEEEEETTTT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCC-------------------CCccceeeECCCCCEEEEECCCC
Confidence 456788777767665 4578889986 4443222111 123567777 677666655567
Q ss_pred eEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEE----EeC-------------CCeEEEEECCCCeeee
Q 011924 210 ELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTA----SNN-------------DCGVRDFDMGKYQLSK 271 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s----~s~-------------dg~v~iwd~~~~~~~~ 271 (475)
.|.+|+.+ ............ ....++.+.+ .|+|+. +++ |.. .+.|..|+..+++...
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIV--ARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEE--CTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEE--CCCCCE-EEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 89999875 332211111111 1123567888 999974 554 221 2457777776665443
Q ss_pred eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC------CcEEEEECCCCceE--EEe
Q 011924 272 HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTI--ASL 343 (475)
Q Consensus 272 ~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------g~i~iwd~~~~~~~--~~l 343 (475)
.. .....+ .++|+|+++.|+++... +.|.+|++..+... ..+
T Consensus 184 ~~-~~~~p~-----------------------------gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 184 MA-DLDHPN-----------------------------GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp EE-EESSEE-----------------------------EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred Ee-cCCCCc-----------------------------ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence 32 223344 88999999988777654 68999998755411 111
Q ss_pred -ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 344 -CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 344 -~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
.........++++++|++.++ +.+ .|.+|+.. ++.+..+..+. .+.+++|+|+++.|.+++.++ +..++
T Consensus 234 ~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 234 ASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD--GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EECCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC--CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 112344567899999995444 444 49999983 56677776555 588999999999888887764 44444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-08 Score=96.08 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=146.6
Q ss_pred eEEecCCCeEEEecC--CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCc--eE
Q 011924 136 LVWATSKHDVYLMSH--FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQG--EL 211 (475)
Q Consensus 136 l~~~~~~~~v~~~~~--~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg--~i 211 (475)
+.+. ....||++.. ..|..|+..++....+.... .... .++..+++.|+++..++ .|
T Consensus 136 la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-----------------~~~~-ia~~~~g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 136 IAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-----------------KGGK-PAVTKDKQRVYSIGWEGTHTV 196 (409)
T ss_dssp EEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETC-----------------CBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred EEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccC-----------------CCCc-eeEecCCCcEEEEecCCCceE
Confidence 3344 3445777643 78889988766655443211 1112 23334788888887766 78
Q ss_pred EEEeCCCCCceEEE-eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee--cc-----ccEEecc
Q 011924 212 ICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FP-----WPVNVSS 283 (475)
Q Consensus 212 ~vw~~~~~~~~~~~-~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~-----~~v~~s~ 283 (475)
.+++.......... ..........+++++ +|++..+++ +..++.|+.|+..++....... .. .|.+
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav--~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~--- 270 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVAL--DETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP--- 270 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTTSCSCCCBCEE--CTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC---
T ss_pred EEEEcCCCceeEEeeeccchhcCCcEEEEE--eCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccc---
Confidence 88887654432111 111213455678888 995444344 5678899999998765322100 11 0122
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCC-CcEEEEEeCCCcEEEEECCCCceEEEeecCC---------------
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHL--------------- 347 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~--------------- 347 (475)
.++|+|+ +.++++-..++.|+.|+.. ++ +..+.++.
T Consensus 271 --------------------------~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~ 322 (409)
T 3hrp_A 271 --------------------------YLIYYFVDSNFYMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALF 322 (409)
T ss_dssp --------------------------EEEEETTTTEEEEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBC
T ss_pred --------------------------cEEEeCCCCEEEEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEe
Confidence 7899995 6666666678889999875 33 33444432
Q ss_pred CCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEEEEecC---------------CCceEEEEEccCCCEEEEEcCC
Q 011924 348 DFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGN---------------LGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~~~~~~---------------~~~v~~l~~spdg~~la~~~~d 411 (475)
.....++++|+|+++++-+ .+++|+.|++.. +. +..+.++ -.....++++|+|.++++-..+
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 4578999999999777777 789999999754 43 4444443 2357899999999888888888
Q ss_pred CeEEEEEC
Q 011924 412 DFVHVYDV 419 (475)
Q Consensus 412 g~i~iwd~ 419 (475)
+.|+.+++
T Consensus 401 ~~Ir~i~~ 408 (409)
T 3hrp_A 401 KAIRKYAV 408 (409)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 88988775
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=8.9e-07 Score=81.61 Aligned_cols=216 Identities=13% Similarity=0.026 Sum_probs=136.2
Q ss_pred eEEEEEE--cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+..+++ +++ ++++-...+.|.++++...... ............+++ ++++..++++....+.|.++++...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---~~~~~~~~~p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---TIIRQDLGSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---EEECTTCCCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---EEEECCCCCccEEEE--EecCCeEEEEECCCCEEEEEEcCCC
Confidence 4567777 344 4555556789999998754432 222222234678888 8876666777777889999998643
Q ss_pred eeeeeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---CCcEEEEECCCCceEEEe
Q 011924 268 QLSKHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 268 ~~~~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~l 343 (475)
........ ..... .++++|++..|.++.. .+.|..+++. +.....+
T Consensus 112 ~~~~~~~~~~~~P~-----------------------------~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~ 161 (267)
T 1npe_A 112 QRRVLFDTGLVNPR-----------------------------GIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRIL 161 (267)
T ss_dssp SCEEEECSSCSSEE-----------------------------EEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEE
T ss_pred CEEEEEECCCCCcc-----------------------------EEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEE
Confidence 22111111 12334 8899996555555543 4678888875 3333333
Q ss_pred e-cCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECC
Q 011924 344 C-GHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVK 420 (475)
Q Consensus 344 ~-~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~ 420 (475)
. ........++++|++..|+.+. ..+.|.++|... ......+.. ......++.. +..|+.+ ...+.|.++|..
T Consensus 162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 2 3345688999999876665554 567999999864 332333332 2334566654 4455544 456899999999
Q ss_pred CCeeEEEEeccC-CCeEEEEEcCCCC
Q 011924 421 SGYEKEQEIDFF-GEISGISFSPDTE 445 (475)
Q Consensus 421 ~~~~~~~~~~~~-~~i~~l~fspdg~ 445 (475)
+++.+..+.... ....++++.|++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 998877775433 2578899999875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-08 Score=88.35 Aligned_cols=184 Identities=12% Similarity=0.111 Sum_probs=131.0
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCL 308 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i 308 (475)
...-+..|.| + ++ .++.+.+.+| .|+++|+.+++.+..+..+...-
T Consensus 41 ~~~ftqGL~~--~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F---------------------------- 88 (262)
T 3nol_A 41 TKAFTEGFFY--R-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF---------------------------- 88 (262)
T ss_dssp TTCEEEEEEE--E-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----------------------------
T ss_pred CCcccceEEE--E-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccc----------------------------
Confidence 3344678888 6 45 5677777766 89999999999998887544332
Q ss_pred eeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe
Q 011924 309 QHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 309 ~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~ 387 (475)
...+.++++.|..+ -.++.+.+||..+.+.+.++... ..-..++ +++..|+.+..++.|.++|..+ .+.+..+.
T Consensus 89 -geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~eG~glt--~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~ 163 (262)
T 3nol_A 89 -GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-GEGWGLT--HNDQYLIMSDGTPVLRFLDPES-LTPVRTIT 163 (262)
T ss_dssp -EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS-SCCCCEE--ECSSCEEECCSSSEEEEECTTT-CSEEEEEE
T ss_pred -eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC-CCceEEe--cCCCEEEEECCCCeEEEEcCCC-CeEEEEEE
Confidence 22233344455544 46889999999999999998842 2223344 5777777777678899999976 56666655
Q ss_pred cCC-----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc------------CCCeEEEEEcCCCCeEEEE
Q 011924 388 GNL-----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF------------FGEISGISFSPDTESLFIG 450 (475)
Q Consensus 388 ~~~-----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~l~fspdg~~l~~~ 450 (475)
... ..++.+.|. +|+..+....++.|.+.|.++|+.+..+... ....++|+|+|+++.|+++
T Consensus 164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 421 234557776 7876666667889999999999988777531 1356899999999999988
Q ss_pred Ee
Q 011924 451 VW 452 (475)
Q Consensus 451 ~~ 452 (475)
+.
T Consensus 243 GK 244 (262)
T 3nol_A 243 GK 244 (262)
T ss_dssp ET
T ss_pred CC
Confidence 74
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=9.7e-09 Score=103.45 Aligned_cols=250 Identities=9% Similarity=0.010 Sum_probs=144.8
Q ss_pred EEEEE-----cCcEEEEEe-cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeC-CCCCeEEEEE------------
Q 011924 193 STLAV-----KDKLLVAGG-FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS-PSGAVHFTAS------------ 253 (475)
Q Consensus 193 ~~l~~-----~~~~lvsg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s-~~g~~~l~s~------------ 253 (475)
..+++ +|++|+... .++.|.+.|+...+......+ . .......+++. + |+++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-p-~g~~phg~~~~-~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-P-NAKGIHGLRPQ-KWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-S-SCCSEEEEEEC-CSSBCSEEEEEECSCEESSCSSSS
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-C-CCCCCcceeee-ecCCCcEEEEecccccccCCCCcc
Confidence 45555 777777655 456799999988665432222 1 12234566652 4 8999855553
Q ss_pred -----eCCCeEEEEECCCCeeeeeeec---cccEEeccCCceEEEEEEee-------cccc---eEEEEeeeeeeEEECC
Q 011924 254 -----NNDCGVRDFDMGKYQLSKHFRF---PWPVNVSSSYCIILLCRLLN-------FMTE---KVIICLLCLQHSSQSP 315 (475)
Q Consensus 254 -----s~dg~v~iwd~~~~~~~~~~~~---~~~v~~s~~~~~l~~~~v~d-------~~~~---~~~~~~~~i~~~~~sp 315 (475)
..++.+.+.|..+.+....+.- +..+.++++++.+....--. ..+. ..+.....-....+.+
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 2345789999999888877763 23333444443332111000 0000 0000000000001122
Q ss_pred CCcEEEEEeCCCcEEEEECCC--Cce-EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCC-----------
Q 011924 316 DGKLLIIVGDNPDGLLVDSMT--GKT-IASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLS----------- 380 (475)
Q Consensus 316 ~g~~l~~~~~dg~i~iwd~~~--~~~-~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~----------- 380 (475)
+|+.... +.|.+.|.++ ++. +..+.. .....++.++|||+++++++. +.+|.++|+.+..
T Consensus 247 ~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 247 AGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 2332222 3588899887 555 555543 234567999999998887764 7899999997521
Q ss_pred ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC----------CeeEEEEeccCCCe-----EEEEEcCCCC
Q 011924 381 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS----------GYEKEQEIDFFGEI-----SGISFSPDTE 445 (475)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~i-----~~l~fspdg~ 445 (475)
..+..+.. ....+.++|+|+|...++...++.|.+||+.+ ...+..+..|..+- .++.++|||+
T Consensus 322 ~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 322 AVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp GEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 12333333 34577999999994445667799999999976 33444444443221 2335689999
Q ss_pred eEEEEE
Q 011924 446 SLFIGV 451 (475)
Q Consensus 446 ~l~~~~ 451 (475)
+|+++.
T Consensus 401 ~l~~~N 406 (595)
T 1fwx_A 401 WLVCLS 406 (595)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 999874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-08 Score=95.44 Aligned_cols=231 Identities=12% Similarity=-0.056 Sum_probs=142.3
Q ss_pred EEEEEecCc----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---------CCCeEEEEECCCC
Q 011924 201 LLVAGGFQG----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKY 267 (475)
Q Consensus 201 ~lvsg~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---------~dg~v~iwd~~~~ 267 (475)
.+++-..++ .|.+.|..+.+... .+..+.. + .+.+ +|+|+.++++.+ .++.|.+||+.++
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~--~i~vG~~-P--~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLG--HSLGAFL-S--LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEE--EEEECTT-C--EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred EEEECCccCCccceEEEEECCCCeEEE--EEeCCCC-C--ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 444444444 88899988776653 2222332 3 6777 999998555542 4789999999999
Q ss_pred eeeeeee-----------ccccEEeccCCceEE--------EEEE--eecccceEEEEeeee--------eeEEECCCCc
Q 011924 268 QLSKHFR-----------FPWPVNVSSSYCIIL--------LCRL--LNFMTEKVIICLLCL--------QHSSQSPDGK 318 (475)
Q Consensus 268 ~~~~~~~-----------~~~~v~~s~~~~~l~--------~~~v--~d~~~~~~~~~~~~i--------~~~~~sp~g~ 318 (475)
+.+.++. .+..+.|+|+++.+. .+.+ +|..+-..+....++ .-++++++|+
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCC
Confidence 9988875 256788999998775 3556 888761111110000 0122223332
Q ss_pred EE-------------------------------------EEEeCCCcEEEEECCCCc--eEEEeec-------C---CCC
Q 011924 319 LL-------------------------------------IIVGDNPDGLLVDSMTGK--TIASLCG-------H---LDF 349 (475)
Q Consensus 319 ~l-------------------------------------~~~~~dg~i~iwd~~~~~--~~~~l~~-------h---~~~ 349 (475)
++ +..+. +.+.+.|+.++. .+..+.- + ...
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 22 22222 445555554322 1111110 0 011
Q ss_pred eEEEEEecCCCEEEEEeC-C--------CeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-EEEEEc-CCCeEEEEE
Q 011924 350 SFASAWHPNGVTFATGNQ-D--------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADFVHVYD 418 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s~-d--------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~la~~~-~dg~i~iwd 418 (475)
...++++|+++.++.+.. . ..+.++|+.+ .+.+..+.... ....++|+|||+ .+++.. .++.|.++|
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 122789999988887643 2 3566999987 67777776543 578999999998 455555 589999999
Q ss_pred CCCCeeEEEEeccCCCeEEEEEcC
Q 011924 419 VKSGYEKEQEIDFFGEISGISFSP 442 (475)
Q Consensus 419 ~~~~~~~~~~~~~~~~i~~l~fsp 442 (475)
+.+++.+.++.. .+...++++.+
T Consensus 344 ~~t~kvv~~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVEL-DKGPESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCC-CSCCCEEECCC
T ss_pred CCCCcEEEEEEC-CCCCCEEEeec
Confidence 999988877653 34455666654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-08 Score=96.47 Aligned_cols=180 Identities=12% Similarity=0.112 Sum_probs=128.3
Q ss_pred CCCCeEEEEEeCCCeEEEEECCCC----eeeeeee---c----c-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeE
Q 011924 244 PSGAVHFTASNNDCGVRDFDMGKY----QLSKHFR---F----P-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHS 311 (475)
Q Consensus 244 ~~g~~~l~s~s~dg~v~iwd~~~~----~~~~~~~---~----~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~ 311 (475)
++++++++.+-.++.|.++|+.+. +.++.+. . . .... .+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-----------------------------~~ 143 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-----------------------------TV 143 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-----------------------------EE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-----------------------------ce
Confidence 788888888989999999999754 5555552 0 0 1122 67
Q ss_pred EECCCCcEEEEEeCC------CcEEEEECCCCceEEEeecCC---CCeEEEEEecCCCEEEEEe----------------
Q 011924 312 SQSPDGKLLIIVGDN------PDGLLVDSMTGKTIASLCGHL---DFSFASAWHPNGVTFATGN---------------- 366 (475)
Q Consensus 312 ~~sp~g~~l~~~~~d------g~i~iwd~~~~~~~~~l~~h~---~~v~~~~~sp~g~~l~t~s---------------- 366 (475)
..+|+| +++++..+ +.+.++|..+++.+.++.... ...+.+.|+|+++.++++.
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 788999 66665444 789999999999999887322 2345688999999999885
Q ss_pred ---CCCeEEEEECCCCCceEEEEecC-C-CceEEEEE--ccCCCEEEEEc------CCCeEEEEECCCCeeE--EEE--e
Q 011924 367 ---QDKTCRIWDLRNLSESVAVLKGN-L-GAIRSIRY--TSDGRYMATAE------PADFVHVYDVKSGYEK--EQE--I 429 (475)
Q Consensus 367 ---~dg~v~iwd~~~~~~~~~~~~~~-~-~~v~~l~~--spdg~~la~~~------~dg~i~iwd~~~~~~~--~~~--~ 429 (475)
...+|.+||+.. .+.+.++... . .....++| +|+|+++++++ .++.|.+|....+... ..+ .
T Consensus 223 ~~~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 223 KDRYGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp HHHSCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred hhccCCEEEEEECCC-CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence 367999999976 6777777653 1 24456666 99999888776 4568877665444311 111 1
Q ss_pred cc----------------CCCeEEEEEcCCCCeEEEEEecC
Q 011924 430 DF----------------FGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 430 ~~----------------~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
.. ...+..|.+||||++|+++.+..
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 10 24578999999999999997754
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-06 Score=84.00 Aligned_cols=290 Identities=9% Similarity=0.008 Sum_probs=174.2
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...||+.. ++.+..++..+++..-.......... ...........+...+..+++++.+|.|..+|..+.+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW--------FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---C--------CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccc--------ccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 45566654 46888899888875433333211000 0000111223445577888889999999999998777
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEE--------eccCCceEE---
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVN--------VSSSYCIIL--- 289 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~--------~s~~~~~l~--- 289 (475)
......... .......+ . ++ . ++.++.++.|..+|..+++.+..+....++. ....+..+.
T Consensus 125 ~~W~~~~~~---~~~~~p~~--~-~~-~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (376)
T 3q7m_A 125 VAWQTKVAG---EALSRPVV--S-DG-L-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD 196 (376)
T ss_dssp EEEEEECSS---CCCSCCEE--E-TT-E-EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT
T ss_pred EEEEEeCCC---ceEcCCEE--E-CC-E-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC
Confidence 654333211 11112222 1 33 3 6777789999999999998877766432221 001222221
Q ss_pred --EEEEeecccceEEEEeeee-----------eeEEECC--CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 290 --LCRLLNFMTEKVIICLLCL-----------QHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 290 --~~~v~d~~~~~~~~~~~~i-----------~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
.+..+|..+++.......- ..+...| .+..+++++.++.+..+|..+|+.+..... .....+.
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~ 274 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI 274 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence 4677788777766443210 0011222 356677788899999999999998876652 2334443
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC
Q 011924 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 355 ~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
. ++..++.++.++.|..+|..+ ++.+-.... ....+..+.. .+..|++++.+|.|+++|.++|+.+.......+
T Consensus 275 ~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~ 349 (376)
T 3q7m_A 275 V--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS 349 (376)
T ss_dssp E--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT
T ss_pred E--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Confidence 3 466788888899999999977 565544442 1222233333 245788888999999999999988776654333
Q ss_pred CeE-EEEEcCCCCeEEEEEecCCc
Q 011924 434 EIS-GISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 434 ~i~-~l~fspdg~~l~~~~~D~~~ 456 (475)
.+. .+.. .+..|++++.|+.+
T Consensus 350 ~~~~~~~~--~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 350 GFQTEPVA--ADGKLLIQAKDGTV 371 (376)
T ss_dssp CBCSCCEE--ETTEEEEEBTTSCE
T ss_pred cceeCCEE--ECCEEEEEeCCCEE
Confidence 332 2222 24578888887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-07 Score=82.90 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=130.4
Q ss_pred CCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeee
Q 011924 230 DDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLC 307 (475)
Q Consensus 230 ~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~ 307 (475)
....-+..+.| ++ ..++.+.+..| .|+.+|+.+++.+.....+....
T Consensus 18 d~~~ftqGL~~--~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--------------------------- 66 (243)
T 3mbr_X 18 DTTAFTEGLFY--LR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--------------------------- 66 (243)
T ss_dssp CTTCCEEEEEE--ET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC---------------------------
T ss_pred CCccccccEEE--EC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc---------------------------
Confidence 34455778888 54 45577766654 89999999999998887544332
Q ss_pred eeeEEECCCCcEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 308 LQHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 308 i~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
...+.+.+..| +..-.++.+.+||..+.+.+.++... ..-..++ +++..|+.+..++.|.++|..+ .+.+..+
T Consensus 67 --geGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I 140 (243)
T 3mbr_X 67 --GAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSI 140 (243)
T ss_dssp --EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEE
T ss_pred --eeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEE
Confidence 22222333444 44457889999999999999998843 3334554 5677777777788999999977 5666666
Q ss_pred ecCC-----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc-------------CCCeEEEEEcCCCCeEE
Q 011924 387 KGNL-----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-------------FGEISGISFSPDTESLF 448 (475)
Q Consensus 387 ~~~~-----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~fspdg~~l~ 448 (475)
.-.. ..++.+.|. +|+..+..-..+.|.+.|.++|+.+..+.-. ....++|+|+|+++.|+
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 5422 244566665 7776665556789999999999988776621 13568999999999999
Q ss_pred EEEe
Q 011924 449 IGVW 452 (475)
Q Consensus 449 ~~~~ 452 (475)
+++.
T Consensus 220 VTGK 223 (243)
T 3mbr_X 220 VTGK 223 (243)
T ss_dssp EEET
T ss_pred EECC
Confidence 8863
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-08 Score=100.25 Aligned_cols=175 Identities=11% Similarity=-0.037 Sum_probs=126.2
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE-C-CCCcEE
Q 011924 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ-S-PDGKLL 320 (475)
Q Consensus 245 ~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~-s-p~g~~l 320 (475)
+|++++++...+..|.+.|+.++++...+. ...... .+++ + |+++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-----------------------------g~~~~~~p~~~~v 150 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-----------------------------GLRPQKWPRSNYV 150 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-----------------------------EEEECCSSBCSEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-----------------------------ceeeeecCCCcEE
Confidence 788888888788899999999999888554 334455 7776 5 899999
Q ss_pred EEEe------------------CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-------------
Q 011924 321 IIVG------------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK------------- 369 (475)
Q Consensus 321 ~~~~------------------~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg------------- 369 (475)
++++ .++.+.++|..+.+.+.++.--. ....++++|+|+++++.+.+.
T Consensus 151 ~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 151 FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp EEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred EEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence 8885 24578899999998888776322 345678999999999888553
Q ss_pred -------------------------eEEEEECCC--CCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCC
Q 011924 370 -------------------------TCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKS 421 (475)
Q Consensus 370 -------------------------~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~ 421 (475)
.|.|.|.++ ....+..+.... ...++.++|||+++++++ .+++|.++|+.+
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence 367777764 222244554332 456899999999877665 578999999986
Q ss_pred Ce-----------eEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 422 GY-----------EKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 422 ~~-----------~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.. .+............++|+|+| ++++..
T Consensus 309 ~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~ 348 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSL 348 (595)
T ss_dssp HHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEE
T ss_pred cccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEE
Confidence 53 122222344578999999999 666553
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-07 Score=96.91 Aligned_cols=270 Identities=13% Similarity=0.115 Sum_probs=163.5
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe------cCceEEEE
Q 011924 142 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG------FQGELICK 214 (475)
Q Consensus 142 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~------~dg~i~vw 214 (475)
...||+.. ++.++-++..+++..-......+... .......++. .++ .+++++ .+|.|+.|
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~--------~~~~~~sP~v---~~g-~v~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR--------SYTITGAPRV---VNG-KVVIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS--------CCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC--------CccccCCcEE---ECC-EEEEEeCCCccCCCCEEEEE
Confidence 45666654 78899999988876543332100000 0011112221 244 445543 37899999
Q ss_pred eCCCCCceEEEeeecCC----------------------------CCceeEEEEEeCCCCCeEEEEEeCCC---------
Q 011924 215 HLDRPGVSFCSRTTYDD----------------------------NAITNAVEIYGSPSGAVHFTASNNDC--------- 257 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~----------------------------~~~v~~l~~~~s~~g~~~l~s~s~dg--------- 257 (475)
|..+.+........... ...-..+.+ .|.+.. ++.++.++
T Consensus 189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~-vy~~~~~g~~w~~~~~~ 265 (689)
T 1yiq_A 189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY--DPELNL-LYIGVGNGSLWDPKWRS 265 (689)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE--ETTTTE-EEEECCCEESSCHHHHH
T ss_pred ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeE--cCCCCE-EEEeCCCCCccccCCCC
Confidence 99988766544432110 001124555 777765 66666665
Q ss_pred ----------eEEEEECCCCeeeeeeecc-ccEEeccCCceEEEEEEeeccc-ceEEEEeeeeeeEEECCCCc---EEEE
Q 011924 258 ----------GVRDFDMGKYQLSKHFRFP-WPVNVSSSYCIILLCRLLNFMT-EKVIICLLCLQHSSQSPDGK---LLII 322 (475)
Q Consensus 258 ----------~v~iwd~~~~~~~~~~~~~-~~v~~s~~~~~l~~~~v~d~~~-~~~~~~~~~i~~~~~sp~g~---~l~~ 322 (475)
.|..+|..+++.+.++... ... |+... ...+ ......+|+ .++.
T Consensus 266 ~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~--------------wd~~~~~~~~-------l~d~~~~G~~~~~v~~ 324 (689)
T 1yiq_A 266 QAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA--------------WDYTATQHMI-------LAELPIDGKPRKVLMQ 324 (689)
T ss_dssp TTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC--------------SCCCCCSCEE-------EEEEEETTEEEEEEEE
T ss_pred CCCCCceeeeeEEEEEccCCceeEeeecCCccc--------------ccccCCCCcE-------EEeeccCCcEEEEEEE
Confidence 4999999999988877632 110 00000 0000 111122554 7888
Q ss_pred EeCCCcEEEEECCCCceEEEeecCC-CC--------------------------------------eEEEEEecCCCEEE
Q 011924 323 VGDNPDGLLVDSMTGKTIASLCGHL-DF--------------------------------------SFASAWHPNGVTFA 363 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~~~~~~l~~h~-~~--------------------------------------v~~~~~sp~g~~l~ 363 (475)
++.+|.++++|..+|+++....-.. .. -..++++|+..+++
T Consensus 325 ~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~y 404 (689)
T 1yiq_A 325 APKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVY 404 (689)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred ECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEE
Confidence 8899999999999999875432111 00 01268899888877
Q ss_pred EEeC---------------------------------------------CCeEEEEECCCCCceEEEEecCCCceEEEEE
Q 011924 364 TGNQ---------------------------------------------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398 (475)
Q Consensus 364 t~s~---------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 398 (475)
+... +|+|+.||+.+ ++.+-.+..+. ++..-.+
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~ 482 (689)
T 1yiq_A 405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT-IFNGGTL 482 (689)
T ss_dssp EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS-SCCCCEE
T ss_pred EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC-CccCccc
Confidence 7632 37899999977 67665555443 2333456
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC-eEEEEEcCCCCeEEE
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTESLFI 449 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~fspdg~~l~~ 449 (475)
...|.++++++.|+.|+.||.++|+.+.++....+. ..-+.|+.+|+..++
T Consensus 483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 483 STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 667889999999999999999999998887654332 245777888875443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7e-08 Score=87.32 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=130.9
Q ss_pred CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeee
Q 011924 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQH 310 (475)
Q Consensus 231 ~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~ 310 (475)
...-+..|.+ + ++.++++.+.+|.|+++|+++++.+..+ .+...- . ..
T Consensus 53 ~~~ftqGL~~--~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F-g--------------------------eG 100 (268)
T 3nok_A 53 TNAFTQGLVF--H--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF-A--------------------------EG 100 (268)
T ss_dssp TTCCEEEEEE--E--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC-E--------------------------EE
T ss_pred CccccceEEE--E--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc-e--------------------------eE
Confidence 3344578887 4 4567888889999999999999988877 443322 0 03
Q ss_pred EEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCC
Q 011924 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 390 (475)
Q Consensus 311 ~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~ 390 (475)
+++.. +++.+..-.++.+.+||..+.+.+.++.. ...-+.++ ++++.|+.+..++.|.++|..+ .+.+..+.-..
T Consensus 101 it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~ 175 (268)
T 3nok_A 101 LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKL 175 (268)
T ss_dssp EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEE
T ss_pred EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCC
Confidence 44432 23444445788999999999999999884 23334444 5778888887789999999977 56666665422
Q ss_pred -----CceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc-------------CCCeEEEEEcCCCCeEEEEE
Q 011924 391 -----GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-------------FGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 391 -----~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~fspdg~~l~~~~ 451 (475)
..++.+.|. +|+..+.....+.|.+.|.++|+.+..+.-. ....++|+|+|+++.|++++
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 244567776 7876666656889999999999988776531 13568999999998888876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-07 Score=98.67 Aligned_cols=273 Identities=11% Similarity=0.044 Sum_probs=167.7
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEec------CceEEEE
Q 011924 142 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGF------QGELICK 214 (475)
Q Consensus 142 ~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~------dg~i~vw 214 (475)
...||+. .++.++.++..+++..-......... .+ ......++ +.+..+++++. +|.|+.+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-----~~---~~~~~~p~----v~~~~v~v~~~~~~~~~~g~v~a~ 195 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK-----GS---LTITGAPR----VFKGKVIIGNGGAEYGVRGYITAY 195 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC-----SS---CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC-----cC---cccccCcE----EECCEEEEEecccccCCCCEEEEE
Confidence 4567764 47889999998887654433220000 00 01111122 23455565553 7999999
Q ss_pred eCCCCCceEEEeeecCCC-----------------------------CceeEEEEEeCCCCCeEEEEEeCCC--------
Q 011924 215 HLDRPGVSFCSRTTYDDN-----------------------------AITNAVEIYGSPSGAVHFTASNNDC-------- 257 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~-----------------------------~~v~~l~~~~s~~g~~~l~s~s~dg-------- 257 (475)
|..+.+............ .....+++ +|++.. ++.++.++
T Consensus 196 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~-vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 196 DAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNT-MYVGTGNGSPWSHKVR 272 (677)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTE-EEEECCCEESSCHHHH
T ss_pred ECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeE--cCCCCE-EEEECCCCccccCCCC
Confidence 998887665443322110 01123555 777775 55554443
Q ss_pred -----------eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC---cEEEEE
Q 011924 258 -----------GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG---KLLIIV 323 (475)
Q Consensus 258 -----------~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g---~~l~~~ 323 (475)
+|..+|..+++.+.++.....-. ||..... ....+....+| +.++++
T Consensus 273 ~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~-------------wd~~~~~------~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN-------------WDYTSTQ------PMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC-------------SCCCCCS------CCEEEEEEETTEEEEEEEEC
T ss_pred CccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc-------------cccccCC------CcEEEecccCCcEeeEEEEE
Confidence 59999999999888776321100 0000000 00022233467 678888
Q ss_pred eCCCcEEEEECCCCceEEEeecCC-C----------Ce------------------------EEEEEecCCCEEEEEeCC
Q 011924 324 GDNPDGLLVDSMTGKTIASLCGHL-D----------FS------------------------FASAWHPNGVTFATGNQD 368 (475)
Q Consensus 324 ~~dg~i~iwd~~~~~~~~~l~~h~-~----------~v------------------------~~~~~sp~g~~l~t~s~d 368 (475)
+.+|.++++|..+|+.+..+.... . ++ ..++++|++.++++...+
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~ 413 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN 413 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence 999999999999999887665221 0 01 146889988888776432
Q ss_pred -------------------------------------------CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE
Q 011924 369 -------------------------------------------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 369 -------------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 405 (475)
+.|..||+.+ ++.+-.+.. ..++....+...|..+
T Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~~~g~~v 491 (677)
T 1kb0_A 414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEH-VSPWNGGTLTTAGNVV 491 (677)
T ss_dssp CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEE
T ss_pred cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCC-CCCCcCcceEeCCCEE
Confidence 7899999976 665555543 2344455567778888
Q ss_pred EEEcCCCeEEEEECCCCeeEEEEeccC-CCeEEEEEcCCCCeEEEE
Q 011924 406 ATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIG 450 (475)
Q Consensus 406 a~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~fspdg~~l~~~ 450 (475)
++++.++.+++||.++|+.+..+.... ....-+.|+++|+.+++.
T Consensus 492 ~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 999999999999999999998887443 233456677888755543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-08 Score=91.86 Aligned_cols=211 Identities=12% Similarity=0.036 Sum_probs=144.2
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-c
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-W 277 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~ 277 (475)
+..|.+|+.+|.|..++.. ....... ......+.++.. .++|. +..++.++.|..+|.. ++....+... .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~---~~~~~~~~~~~~--~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF---KTKKAIYATPIV--SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE---ECSSCCCSCCEE--CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE---cCCCceeeeeEE--cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 6778888889999999987 4433221 123334555655 66775 5566678999999998 7766665532 2
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
.+. ++.+.++|.+.+ ++ +.+..+| .+++.+..+......+.++...+
T Consensus 178 ~~~-----------------------------~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~ 224 (330)
T 3hxj_A 178 ITS-----------------------------AASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE 224 (330)
T ss_dssp CCS-----------------------------CCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT
T ss_pred cee-----------------------------eeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECC
Confidence 333 667777887554 44 7899999 78887777766666788888888
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 437 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 437 (475)
+|. |..++.++.|..+|. + +..+..+......+..+.+.++|+ |.+++.++.|..+|. +++.+..+......+.+
T Consensus 225 ~g~-l~v~t~~~gl~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~ 299 (330)
T 3hxj_A 225 DGT-IYVTSLDGHLYAINP-D-GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIAT 299 (330)
T ss_dssp TSC-EEEEETTTEEEEECT-T-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred CCe-EEEEcCCCeEEEECC-C-CCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccc
Confidence 875 555667778888875 3 455555554444455566766775 566777888999995 67766666555556778
Q ss_pred EEEcCCCCeEEEEEecCCcc
Q 011924 438 ISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~ 457 (475)
+...++|+ |++++.+|.+.
T Consensus 300 ~~~d~~g~-l~~gt~~G~~~ 318 (330)
T 3hxj_A 300 PVIDENGT-IYFGTRNGKFY 318 (330)
T ss_dssp CEECTTCC-EEEECTTSCEE
T ss_pred eEEcCCCE-EEEEcCCCeEE
Confidence 88878875 66777776553
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-07 Score=97.70 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=163.5
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC-------Cc-eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-------AI-TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-------~~-v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
.+..|++++.++.|+.+|..+.+............ .. ...+.+ .+.. +++++.|+.|..+|..+++.
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~-v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGK-VYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTE-EEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCE-EEEEccCCEEEEEECCCCCE
Confidence 56677888889999999998877665433211100 00 111222 2333 77777899999999999998
Q ss_pred eeeeecc------ccEEecc---CCceE-----------EEEEEeecccceEEEEeeee---------------------
Q 011924 270 SKHFRFP------WPVNVSS---SYCII-----------LLCRLLNFMTEKVIICLLCL--------------------- 308 (475)
Q Consensus 270 ~~~~~~~------~~v~~s~---~~~~l-----------~~~~v~d~~~~~~~~~~~~i--------------------- 308 (475)
+..+... ..+..+| .+.++ +.+..+|..+|+.+.....+
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 8766532 1222222 23222 24778888888877554311
Q ss_pred --------------eeEEECCCCcEEEEEeCCCc-------------------EEEEECCCCceEEEeec--CC------
Q 011924 309 --------------QHSSQSPDGKLLIIVGDNPD-------------------GLLVDSMTGKTIASLCG--HL------ 347 (475)
Q Consensus 309 --------------~~~~~sp~g~~l~~~~~dg~-------------------i~iwd~~~~~~~~~l~~--h~------ 347 (475)
..++++|++.+++++..++. |..+|..+|+.+..++. |.
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 25788898889998877753 99999999999888764 22
Q ss_pred -CCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCCceEEEEecCC---------------------------------
Q 011924 348 -DFSFASAWHPNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNL--------------------------------- 390 (475)
Q Consensus 348 -~~v~~~~~sp~g~---~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~--------------------------------- 390 (475)
..+.-.....+|+ .++.++.+|.+.++|.++ ++++.......
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1122223333665 788999999999999977 66553222110
Q ss_pred ----C--ceEEEEEccCCCEEEEEcC---------------------------------------------CCeEEEEEC
Q 011924 391 ----G--AIRSIRYTSDGRYMATAEP---------------------------------------------ADFVHVYDV 419 (475)
Q Consensus 391 ----~--~v~~l~~spdg~~la~~~~---------------------------------------------dg~i~iwd~ 419 (475)
+ .-..++|+|+..+|++... +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0 0113789998887776521 377999999
Q ss_pred CCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 420 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 420 ~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
.+|+.+-+...+. ++.+..++..+..+++|+.|+.+
T Consensus 463 ~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 463 VKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEE
T ss_pred CCCCeEeEccCCC-CccCccceECCCEEEEECCCCcE
Confidence 9999887765443 33444666778888888766543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-07 Score=99.58 Aligned_cols=298 Identities=11% Similarity=0.008 Sum_probs=170.0
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...||+.+ ++.|+-++..+++..-..+........ +. .........+++.+..|++++.+|.|..+|..+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~----~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTG---FK----GCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGG---GG----SSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc---cc----ccccCCCCCceEECCEEEEEcCCCEEEEEECCCCC
Confidence 34566544 477888888777554333222110000 00 00000012344567888999999999999998877
Q ss_pred ceEEEeeecCC---CCceeEEEEEeCCCCCeEEEEEe-----CCCeEEEEECCCCeeeeeeeccccE----EeccCCceE
Q 011924 221 VSFCSRTTYDD---NAITNAVEIYGSPSGAVHFTASN-----NDCGVRDFDMGKYQLSKHFRFPWPV----NVSSSYCII 288 (475)
Q Consensus 221 ~~~~~~~~~~~---~~~v~~l~~~~s~~g~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~~v----~~s~~~~~l 288 (475)
........... ........+ . ++ .+++.++ .++.|+.||..+++.+..+....+. ...+. .-
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v--~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~--~~ 223 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRV--F-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES--MK 223 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEE--E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH--HH
T ss_pred EEeeecCCcCcCcCcccccCcEE--E-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc--cc
Confidence 66544332010 011111122 1 33 3333332 2799999999999998777632111 00000 00
Q ss_pred EEEEEeecccceEE---EEeeeeeeEEECCCCcEEEEEeCCC-------------------cEEEEECCCCceEEEeec-
Q 011924 289 LLCRLLNFMTEKVI---ICLLCLQHSSQSPDGKLLIIVGDNP-------------------DGLLVDSMTGKTIASLCG- 345 (475)
Q Consensus 289 ~~~~v~d~~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~dg-------------------~i~iwd~~~~~~~~~l~~- 345 (475)
.....|.. .+... ........++++|++.+++++..++ .|..+|..+|+.+..++.
T Consensus 224 ~g~~~w~~-~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 224 RAARTWDP-SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp HHHTTSCG-GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred cccccccc-cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 00000100 00000 0000112568889888888887654 499999999999887764
Q ss_pred -CC-------CCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCCceEEEEecCC----------C-ce----------
Q 011924 346 -HL-------DFSFASAWHPNG---VTFATGNQDKTCRIWDLRNLSESVAVLKGNL----------G-AI---------- 393 (475)
Q Consensus 346 -h~-------~~v~~~~~sp~g---~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~----------~-~v---------- 393 (475)
|. ....-+....+| ..++.++.+|.|.++|.++ ++.+..+.... + ++
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 21 112223344477 6899999999999999987 66665544211 0 01
Q ss_pred --------------EEEEEccCCCEEEEEcC-------------------------------------------CCeEEE
Q 011924 394 --------------RSIRYTSDGRYMATAEP-------------------------------------------ADFVHV 416 (475)
Q Consensus 394 --------------~~l~~spdg~~la~~~~-------------------------------------------dg~i~i 416 (475)
..++|+|++.++++... .+.|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 15788998888777532 278999
Q ss_pred EECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 417 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
||+.+++.+-+.. +..++.+..++.++..+++++.|+.
T Consensus 462 ~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~ 499 (677)
T 1kb0_A 462 WDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR 499 (677)
T ss_dssp EETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE
T ss_pred EeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCc
Confidence 9999998877665 3444555667777888888866654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-10 Score=112.66 Aligned_cols=172 Identities=11% Similarity=0.050 Sum_probs=93.9
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe
Q 011924 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG 324 (475)
Q Consensus 245 ~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 324 (475)
++.. +++++.|+.|+.||..+++.+..+.. .++. +..+.+++..+++++
T Consensus 8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-----------------------------s~p~~~~g~~~v~~s 56 (369)
T 2hz6_A 8 PETL-LFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-----------------------------QVPTHVEEPAFLPDP 56 (369)
T ss_dssp CTTE-EEEEETTSEEEEEETTTCCEEEEEEC-CCSC-----------------------------CCC-----CCEEECT
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEecC-CCce-----------------------------ecceEcCCCEEEEeC
Confidence 3444 78888999999999999999887776 4444 444556777888878
Q ss_pred CCCcEEEEECCCCceEEEeecCCCC-eE-EEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC
Q 011924 325 DNPDGLLVDSMTGKTIASLCGHLDF-SF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402 (475)
Q Consensus 325 ~dg~i~iwd~~~~~~~~~l~~h~~~-v~-~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg 402 (475)
.++.|+.||..+|+.+..+..+... +. +..+. .+..+++++.++.|+.||.++ ++.+-.+..+. ...++|++
T Consensus 57 ~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~ 130 (369)
T 2hz6_A 57 NDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPST 130 (369)
T ss_dssp TTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------
T ss_pred CCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccC
Confidence 9999999999999887766543211 10 01111 345678888899999999977 66655554432 24567788
Q ss_pred CEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC---CeEEEEEecCC
Q 011924 403 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT---ESLFIGVWDRT 455 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg---~~l~~~~~D~~ 455 (475)
..|++++.++.|+.||.++|+.+..+.... ....+++++. ..+++++.|+.
T Consensus 131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~ 184 (369)
T 2hz6_A 131 SLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL 184 (369)
T ss_dssp --EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE
T ss_pred CEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCE
Confidence 899999999999999999997655543211 1223333332 45666655543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-08 Score=93.41 Aligned_cols=101 Identities=7% Similarity=-0.201 Sum_probs=77.4
Q ss_pred CeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEE
Q 011924 247 AVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLII 322 (475)
Q Consensus 247 ~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~ 322 (475)
..++++...++ +|.++|..+++.+.++..... - .+.++|+|+++++
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P-----------------------------~i~~spDg~~lyV 81 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S-----------------------------LAVAGHSGSDFAL 81 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C-----------------------------EEEECTTSSCEEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C-----------------------------ceEECCCCCEEEE
Confidence 44466655555 888999999999988873221 1 5689999999998
Q ss_pred Ee----------CCCcEEEEECCCCceEEEeecC-------CCCeEEEEEecCCCEEEEEeC--CCeEEE--EECC
Q 011924 323 VG----------DNPDGLLVDSMTGKTIASLCGH-------LDFSFASAWHPNGVTFATGNQ--DKTCRI--WDLR 377 (475)
Q Consensus 323 ~~----------~dg~i~iwd~~~~~~~~~l~~h-------~~~v~~~~~sp~g~~l~t~s~--dg~v~i--wd~~ 377 (475)
+. .++.|.+||+.+++.+.++... ......++++|||+++++++. ...|.+ +|+.
T Consensus 82 an~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~ 157 (368)
T 1mda_H 82 ASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp EEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred EcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence 86 3678999999999999998643 124567899999999999875 457888 8873
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.4e-07 Score=80.82 Aligned_cols=192 Identities=13% Similarity=0.054 Sum_probs=132.7
Q ss_pred EEEEEE--cCcEEEEEec--CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
...|++ ++.++++.+. ++.|.+.|+.+.+......+ ........+++ .++.++++.-.++.+.++|..++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~----~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTL----LNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEETTCSEEEEEETTTT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEE----eCCEEEEEEecCCEEEEEECCCC
Confidence 356677 3444444443 57999999998776532222 22212234544 35566677767899999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
+.+..+... .-. ...++++|+.++++..++.|.++|..+.+.+..+.-..
T Consensus 97 ~v~~~i~~g-~~~-----------------------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 97 SNIKNFTHQ-MKD-----------------------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp EEEEEEECC-SSS-----------------------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred cEEEEEECC-CCC-----------------------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC
Confidence 999888744 111 33466788878777778899999999999888776321
Q ss_pred -----CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-------------CCceEEEEEccCCC-EEEEE
Q 011924 348 -----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-------------LGAIRSIRYTSDGR-YMATA 408 (475)
Q Consensus 348 -----~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-------------~~~v~~l~~spdg~-~la~~ 408 (475)
..++.+.|. +|...+....++.|.+.|..+ ++.+..+... ......++|+|+++ +++++
T Consensus 147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 246788888 775555554678999999987 7777777642 12457999999986 55556
Q ss_pred cCCCeEEEEECCC
Q 011924 409 EPADFVHVYDVKS 421 (475)
Q Consensus 409 ~~dg~i~iwd~~~ 421 (475)
...+.|.+.++..
T Consensus 225 k~~~~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLWPKLFEIKLHL 237 (266)
T ss_dssp TTCSEEEEEEEEE
T ss_pred CCCCeEEEEEEec
Confidence 6778888888754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-07 Score=90.08 Aligned_cols=222 Identities=8% Similarity=-0.001 Sum_probs=131.9
Q ss_pred eeEEEEEE--cCcEEEEEec-----CceEEEEeCCCCCceEEEeee---cCCCCceeEEEEEeCCCCCeEEEEEe---CC
Q 011924 190 TQVSTLAV--KDKLLVAGGF-----QGELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPSGAVHFTASN---ND 256 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~-----dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~~~s~~g~~~l~s~s---~d 256 (475)
..+..+++ +++++++-.. .+.|.+||+.+.+........ ..+....+.+++ ++++..++++.+ .+
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAV--DLIHNFVYISDPAPDDK 144 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEE--ETTTTEEEEEECCSGGG
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEE--ecCCCEEEEEcCccCCC
Confidence 36788888 4566565433 578999998865533222211 112234688888 876555567765 68
Q ss_pred CeEEEEECCCCeeeeeeec-----cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC-cEE
Q 011924 257 CGVRDFDMGKYQLSKHFRF-----PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP-DGL 330 (475)
Q Consensus 257 g~v~iwd~~~~~~~~~~~~-----~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg-~i~ 330 (475)
+.|.+||+.+++..+.+.. +.+..+..++..+. ..+. .+........+..++|+|+|+.|+++...+ .++
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~---~~~~-~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQ---IGQP-DGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECB---EECT-TSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEE---eccC-CCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence 8999999988877665431 11122233332111 0000 011100011234899999999888876655 555
Q ss_pred EEECC---CCc-----eEE--EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-CCCceEEEEEc
Q 011924 331 LVDSM---TGK-----TIA--SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYT 399 (475)
Q Consensus 331 iwd~~---~~~-----~~~--~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~s 399 (475)
.++.. .+. ... ...++......++++++|+++++...++.|.+||... ++....... ....+.+++|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGSCEEEEEEC
T ss_pred EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCceecCCeeEEC
Confidence 55432 111 000 1123444566799999999999988899999999843 443333322 24568899999
Q ss_pred cCCCEEEEEcCCCeEEEEE
Q 011924 400 SDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd 418 (475)
++|+++++.+..+.+.+|.
T Consensus 300 ~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTSCEEEEECCGGGSGGGB
T ss_pred CCCcEEEEeCccccccccc
Confidence 9999888877655554443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-06 Score=80.68 Aligned_cols=243 Identities=13% Similarity=0.052 Sum_probs=148.2
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecC-------CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-------DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
.+..+++++.+|.|..+|..+.+.......... .......+.. .+.. +++++.++.|..+|..+++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGH-VYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTE-EEEEETTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCE-EEEEcCCCEEEEEECCCCCEE
Confidence 577888888899999999987776543333211 1122233333 2344 667778999999999999887
Q ss_pred eeeeccccEEe---ccCCceEE-----EEEEeecccceEEEEeeee---------eeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 271 KHFRFPWPVNV---SSSYCIIL-----LCRLLNFMTEKVIICLLCL---------QHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 271 ~~~~~~~~v~~---s~~~~~l~-----~~~v~d~~~~~~~~~~~~i---------~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
..+.....+.. ...+..+. .+..+|..+++.......- ..... .+..+++++.++.+..+|
T Consensus 127 W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 127 WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEE
T ss_pred EEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEE
Confidence 76664322211 11222222 4778888888776543311 11112 245677788889999999
Q ss_pred CCCCceEEEeecCCCC-------eEEEEEec--CCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCE
Q 011924 334 SMTGKTIASLCGHLDF-------SFASAWHP--NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 404 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~-------v~~~~~sp--~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 404 (475)
..+|+.+......... +..+.-.| .+..++.++.++.+..+|.++ ++.+-.... .....+.. ++..
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~--~~~~~~~~--~~~~ 279 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS-GQIMWKREL--GSVNDFIV--DGNR 279 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT-CCEEEEECC--CCEEEEEE--ETTE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC-CcEEeeccC--CCCCCceE--ECCE
Confidence 9999988776532110 00011122 356778888899999999977 555544332 23444444 3567
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEecC
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
|++++.++.|..+|.++|+.+...... ...+..+... +..|+++..++
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g 328 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEG 328 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTS
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCC
Confidence 788888899999999999877665422 2223333332 44666665554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-05 Score=73.64 Aligned_cols=217 Identities=7% Similarity=-0.020 Sum_probs=131.4
Q ss_pred cEEEEEecCceEEEEeCCCCCceE--EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec-c
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-P 276 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~ 276 (475)
.+|+.+. .+.|+.++++...... ..............+++ ++.+..++++....+.|..+++........+.. .
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 3455554 3578888887543210 00111111234567888 887777677777788999999976543322221 1
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAW 355 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~ 355 (475)
.... +++++|++..|.++ ...+.|.++++........+.........+++
T Consensus 79 ~~p~-----------------------------~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~v 129 (267)
T 1npe_A 79 GSPE-----------------------------GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVT 129 (267)
T ss_dssp CCEE-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred CCcc-----------------------------EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEE
Confidence 2344 88999975555544 55678999998643322223222356789999
Q ss_pred ecCCCEEEEEeC---CCeEEEEECCCCCceEEEEe-cCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEec
Q 011924 356 HPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 356 sp~g~~l~t~s~---dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
+|++..|+.+.. .+.|..+++.. .....+. ........++++|++..|+.+ ...+.|.++|+..... ..+..
T Consensus 130 d~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~ 206 (267)
T 1npe_A 130 DPVRGNLYWTDWNRDNPKIETSHMDG--TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE 206 (267)
T ss_dssp ETTTTEEEEEECCSSSCEEEEEETTS--CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE
T ss_pred eeCCCEEEEEECCCCCcEEEEEecCC--CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEec
Confidence 996665555544 36888888853 2223332 333467899999987766555 4568999999875433 33333
Q ss_pred cCCCeEEEEEcCCCCeEEEEEec
Q 011924 431 FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 431 ~~~~i~~l~fspdg~~l~~~~~D 453 (475)
......+++. ++..|+++.+.
T Consensus 207 ~~~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 207 GLQYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp CCCSEEEEEE--ETTEEEEEETT
T ss_pred CCCCceEEEE--eCCEEEEEECC
Confidence 3345567765 45677777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-06 Score=77.57 Aligned_cols=180 Identities=8% Similarity=0.063 Sum_probs=124.0
Q ss_pred EEEEEE-cCcEEEEEecCc--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV-KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~-~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
...|.+ ++.++++.|.+| .|+++|+.+.+......+ ....---.+++ .++.++++.-.++.+.+||..+.+
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE----eCCEEEEEEeeCCEEEEEECccCc
Confidence 445666 666666777766 899999998776643322 21111123444 455656666678999999999999
Q ss_pred eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecC--
Q 011924 269 LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-- 346 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h-- 346 (475)
.+.++..+. . ...++++++.|+++..++.|.++|..+.+.+.++.-.
T Consensus 119 ~~~ti~~~~--e-----------------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~ 167 (262)
T 3nol_A 119 QVRSFNYDG--E-----------------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH 167 (262)
T ss_dssp EEEEEECSS--C-----------------------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET
T ss_pred EEEEEECCC--C-----------------------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC
Confidence 999988543 2 2234467777777766788999999999988887642
Q ss_pred C---CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC------------CCceEEEEEccCCCEEEEEcC
Q 011924 347 L---DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN------------LGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 347 ~---~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~------------~~~v~~l~~spdg~~la~~~~ 410 (475)
. ..+..+.|. +|++.+..-.+..|.+.|.++ ++.+..+... ....+.|||+|+++.|.+.+.
T Consensus 168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CccccccceeEEE-CCEEEEEEccCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 334567776 776555555688999999977 7777777642 124578999998877766664
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.9e-06 Score=76.54 Aligned_cols=222 Identities=11% Similarity=0.067 Sum_probs=135.7
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-CC-eEEEEECCCC
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DC-GVRDFDMGKY 267 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-dg-~v~iwd~~~~ 267 (475)
...+++ +++++++-..++.|..++.... .. ... ........+++ .++|+. +++... ++ .|..++..++
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~--~~~--~~~~~p~gia~--~~dG~l-~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ--IHA--TVEGKVSGLAF--TSNGDL-VATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EE--EEE--ECSSEEEEEEE--CTTSCE-EEEEECTTSCEEEEEECTTS
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eE--EEE--eCCCCceeEEE--cCCCcE-EEEeccCCcceEEEEcCCCC
Confidence 456677 6777777667899998887642 22 111 12345778888 999984 555433 22 4667777777
Q ss_pred eeeeeeecc--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce-EEEee
Q 011924 268 QLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IASLC 344 (475)
Q Consensus 268 ~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-~~~l~ 344 (475)
+.......+ .... .++..+.+..+++-...+.|+.+|..+++. +....
T Consensus 106 ~~~~~~~~~~~~~~~-----------------------------g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~ 156 (306)
T 2p4o_A 106 TVETLLTLPDAIFLN-----------------------------GITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 156 (306)
T ss_dssp CEEEEEECTTCSCEE-----------------------------EEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEeCCCccccC-----------------------------cccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence 654333221 1122 455556665555544678899999775532 21111
Q ss_pred ---------cCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 345 ---------GHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 345 ---------~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
+.......+ +|+++.|+.+. ..+.|.++++...+. ....+.. ......++++++|+++++....+
T Consensus 157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTC
T ss_pred CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCC
Confidence 111234555 88887666554 567999999863121 1122221 13456799999998877776778
Q ss_pred eEEEEECCCCeeEEE--EeccCCCeEEEEEc---CCCCeEEEEEecC
Q 011924 413 FVHVYDVKSGYEKEQ--EIDFFGEISGISFS---PDTESLFIGVWDR 454 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~--~~~~~~~i~~l~fs---pdg~~l~~~~~D~ 454 (475)
.|.++|.. |+.... +......+.+++|. |++..|+++...+
T Consensus 234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 99999965 554322 22223568999999 8999999887654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-07 Score=85.04 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=133.8
Q ss_pred eEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 191 ~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
.+.++.. .+..|..|+.+ |..++. +..... .............+ . ++ . +..++.++.|..+|.. ++.
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~---~~~~~~~~~~~~~~--~-~~-~-l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINP-DGTEKW---RFDTKKAIVSDFTI--F-ED-I-LYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECC-CGGGGG---GSCC-----CCEEE--E-TT-E-EEEECTTSEEEEECTT-SCE
T ss_pred cccceEEecCCcEEEecCc--EEEECC-CCcEEE---EEECCCCcccCceE--E-CC-E-EEEEecCCEEEEEcCC-CCE
Confidence 4566666 35566666655 777775 222211 11111222333344 2 44 3 6667788999999988 666
Q ss_pred eeeeecc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCC
Q 011924 270 SKHFRFP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 270 ~~~~~~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
...+... ..+. ++...+++. +.+++.++.+..+|.. ++.+..+.....
T Consensus 129 ~~~~~~~~~~~~-----------------------------~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 129 KWRFKTKKAIYA-----------------------------TPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp EEEEECSSCCCS-----------------------------CCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred EEEEcCCCceee-----------------------------eeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 5555432 2233 566777777 5557777899999998 888777776666
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
.+.++...+++.+.+.. +.|..+| .+ ++.+.........+.++...++|++. +++.++.|..+| .++..+..+
T Consensus 178 ~~~~~~~d~~g~l~v~t---~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~-~~g~~~~~~ 250 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS---DKVYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAIN-PDGTEKWRF 250 (330)
T ss_dssp CCSCCEECTTCCEEEES---SSEEEEC-TT-SCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEEC-TTSCEEEEE
T ss_pred ceeeeEEcCCCEEEEEe---CEEEEEC-CC-CcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEEC-CCCCEeEEe
Confidence 67778887888755444 7799999 44 55555555555668888899888654 455677788888 466666555
Q ss_pred eccCCCeEEEEEcCCCCeEEEEEecC
Q 011924 429 IDFFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 429 ~~~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
......+..+.+.++| .|++++.++
T Consensus 251 ~~~~~~~~~~~~~~~g-~l~v~t~~g 275 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTD-TIYFGSYDG 275 (330)
T ss_dssp ECSSCCCSCCEECTTS-CEEEECTTC
T ss_pred eCCCCccccceEcCCC-eEEEecCCC
Confidence 5444445566666666 455665553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-05 Score=74.95 Aligned_cols=252 Identities=9% Similarity=-0.024 Sum_probs=150.7
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~ 210 (475)
+.+........|+++....|...+........++. .+ .....++| .+.++++-...+.
T Consensus 79 ~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~-----------------~~--~~~~gl~~d~~~~~ly~~D~~~~~ 139 (386)
T 3v65_B 79 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-----------------NL--ENAIALDFHHRRELVFWSDVTLDR 139 (386)
T ss_dssp SCEEECSSCCEEEEECBSCEEEECTTSCCCEEEEC-----------------SC--SCEEEEEEETTTTEEEEEETTTTE
T ss_pred CeECCccccceeEeecCccceeeccCCCcEEEEec-----------------CC--CccEEEEEecCCCeEEEEeCCCCc
Confidence 44444334456667777778777765544333321 11 13567777 3445556667788
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|..++++..... .+..........+++ .+.+..++++-...+.|.+.++........+. .....+
T Consensus 140 I~r~~~~g~~~~---~~~~~~~~~p~glav--d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~--------- 205 (386)
T 3v65_B 140 ILRANLNGSNVE---EVVSTGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR--------- 205 (386)
T ss_dssp EEEEETTSCCEE---EEECSSCSCCCCEEE--ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEE---------
T ss_pred EEEEecCCCCcE---EEEeCCCCCccEEEE--EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCc---------
Confidence 999988755433 222222223456777 76666667777777888888886533222222 112334
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CC-CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE-e
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-N 366 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d-g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s 366 (475)
.++++|.+..|..+. .. +.|..+++..................++|+|++..|+.+ +
T Consensus 206 --------------------giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 206 --------------------AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp --------------------EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred --------------------EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 889998666555543 33 678888876433333333344567899999866656555 4
Q ss_pred CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
..+.|..+|+.. ......+.........+++ ..+.++++-...+.|..++..+|..+..+......+.+|++
T Consensus 266 ~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 266 KHHVIERANLDG-SHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTTEEEEECTTS-CSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCEEEEEeCCC-CeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 567899999864 3333334333445678888 44556666667789999997777766666544344455544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=9e-05 Score=71.05 Aligned_cols=251 Identities=9% Similarity=-0.024 Sum_probs=148.2
Q ss_pred ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~ 210 (475)
+.+........++++....|...+........++. .+ .....++| .+.++++-...+.
T Consensus 36 ~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~-----------------~~--~~~~~l~~d~~~~~ly~~D~~~~~ 96 (349)
T 3v64_C 36 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-----------------NL--ENAIALDFHHRRELVFWSDVTLDR 96 (349)
T ss_dssp SCEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC-----------------SC--SCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcccccccCceeEeecccceEEEeCCCCeeEEeec-----------------CC--CceEEEEEeccccEEEEEeccCCc
Confidence 44444334456667777777777654433332221 11 13567777 3445556567788
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEE
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIIL 289 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~ 289 (475)
|..+++...... .+..........+++ .+.+..++++-...+.|.+.++........+. .....+
T Consensus 97 I~r~~~~g~~~~---~~~~~~~~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~--------- 162 (349)
T 3v64_C 97 ILRANLNGSNVE---EVVSTGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR--------- 162 (349)
T ss_dssp EEEEETTSCSCE---EEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE---------
T ss_pred eEEEecCCCCce---EEEeCCCCCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc---------
Confidence 999988765433 222222233467777 76666667777777899999986543222221 122334
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCC-CcEEEEECCCCceEEEe-ecCCCCeEEEEEecCCCEEEEE-
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDN-PDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATG- 365 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~d-g~i~iwd~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~t~- 365 (475)
.++++|.+..|..+ ... +.|..+++.. .....+ .........++++|++..|+.+
T Consensus 163 --------------------~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 163 --------------------AIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp --------------------EEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred --------------------eEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 88999965555544 344 7788888753 333333 2234567899999866666555
Q ss_pred eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 366 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
...+.|..+|+.. ......+.........+++ ..+.+.++-...+.|..++..+|.....+......+.++++
T Consensus 222 ~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 222 AKHHVIERANLDG-SHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp TTTTEEEEEETTS-CSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCCEEEEEeCCC-CceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 4567899999864 3323333333455678888 34555566666788999997677665555533333444443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-05 Score=71.86 Aligned_cols=192 Identities=8% Similarity=0.061 Sum_probs=128.0
Q ss_pred eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc--ccEEeccCCceEEEEEEeecccceEEEE
Q 011924 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP--WPVNVSSSYCIILLCRLLNFMTEKVIIC 304 (475)
Q Consensus 227 ~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~ 304 (475)
...+-...+..+++ +|+++.++++...++.|...|+. ++.++.+... ....
T Consensus 21 ~l~g~~~~lSGla~--~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E------------------------ 73 (255)
T 3qqz_A 21 EIAGITNNISSLTW--SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE------------------------ 73 (255)
T ss_dssp ECTTCCSCEEEEEE--ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE------------------------
T ss_pred ECCCcccCcceeEE--eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH------------------------
Confidence 44455567899999 88887777778888999999997 8888877643 3445
Q ss_pred eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce---EEEee------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 011924 305 LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASLC------GHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375 (475)
Q Consensus 305 ~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~l~------~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd 375 (475)
.+++.+++.++++.-.++.+.++++..... +.... ........++|+|.++.|+++.......||.
T Consensus 74 -----GIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 74 -----TIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK 148 (255)
T ss_dssp -----EEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred -----HeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence 888999888767665677899998764432 22222 1223458999999887777776655445555
Q ss_pred CCC--CCceEEEEec-------CCCceEEEEEccC-CCEEEEEcCCCeEEEEECCCCeeEEEEeccC---------CCeE
Q 011924 376 LRN--LSESVAVLKG-------NLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEIS 436 (475)
Q Consensus 376 ~~~--~~~~~~~~~~-------~~~~v~~l~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~ 436 (475)
+.. ....+..+.. ....+.+++++|. |++++.......|.++|.. |..+..+.-.. ....
T Consensus 149 ~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpE 227 (255)
T 3qqz_A 149 VNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAE 227 (255)
T ss_dssp EESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEE
T ss_pred EcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCC
Confidence 431 1122232211 2335689999995 4566666677889999965 55554443221 2678
Q ss_pred EEEEcCCCCeEEEEEe
Q 011924 437 GISFSPDTESLFIGVW 452 (475)
Q Consensus 437 ~l~fspdg~~l~~~~~ 452 (475)
+|+|.|+|+ |++.+.
T Consensus 228 Gia~d~~G~-lyIvsE 242 (255)
T 3qqz_A 228 GVAMDASGN-IYIVSE 242 (255)
T ss_dssp EEEECTTCC-EEEEET
T ss_pred eeEECCCCC-EEEEcC
Confidence 999999997 555543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-06 Score=78.25 Aligned_cols=178 Identities=11% Similarity=0.034 Sum_probs=123.8
Q ss_pred EEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 192 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 192 v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
...|.+ ++.++++.+.+|.|+++|+.+.+..... +.. ..---.+++ .++.++++.-.++.+.+||..+.+.+
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~----~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLAS----DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEE----CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEE----eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 456777 5556667788899999999988876433 221 111123444 45555666667899999999999999
Q ss_pred eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec--CC-
Q 011924 271 KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HL- 347 (475)
Q Consensus 271 ~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~--h~- 347 (475)
.++.....-. .+.++++.|+++..++.|.++|..+.+.+.++.- +.
T Consensus 130 ~ti~~~~eGw-------------------------------GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 130 RTTRYSGEGW-------------------------------GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ 178 (268)
T ss_dssp EEEECSSCCC-------------------------------CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEEeCCCcee-------------------------------EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence 9988542212 3336778888877788999999999998887763 21
Q ss_pred --CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-------------CCceEEEEEccCCCEEEEEc
Q 011924 348 --DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-------------LGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 348 --~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-------------~~~v~~l~~spdg~~la~~~ 409 (475)
..+..+.|. +|.+.+..-.+..|.+.|.++ ++.+..+... ....+.|||+|+++.|.+.+
T Consensus 179 ~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 179 PVELINELECA-NGVIYANIWHSSDVLEIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccccEEe-CCEEEEEECCCCeEEEEeCCC-CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 245677776 776555554678999999977 7777777532 13568899999765454443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-05 Score=77.42 Aligned_cols=252 Identities=14% Similarity=0.064 Sum_probs=150.7
Q ss_pred EEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCC-C-CceeEEEEEeCCCCCeEEEEEeC-----CCeEEEEECCCCe
Q 011924 196 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDD-N-AITNAVEIYGSPSGAVHFTASNN-----DCGVRDFDMGKYQ 268 (475)
Q Consensus 196 ~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~s~~g~~~l~s~s~-----dg~v~iwd~~~~~ 268 (475)
++.+..+++++.+|.|..+|..+.+........... . .......+ . ++ .+++.++. ++.|..+|..+++
T Consensus 112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--A-KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--E-TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--E-CC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 346778888889999999999887766544332110 0 11111112 1 34 33433332 7999999999999
Q ss_pred eeeeeecccc------------------------------------------EEeccCCceEE-----------------
Q 011924 269 LSKHFRFPWP------------------------------------------VNVSSSYCIIL----------------- 289 (475)
Q Consensus 269 ~~~~~~~~~~------------------------------------------v~~s~~~~~l~----------------- 289 (475)
.+..+....+ +.+.+....+.
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 8876652211 11111111221
Q ss_pred -----EEEEeecccceEEEEeee----------eeeE---EECCCCc---EEEEEeCCCcEEEEECCCCceEEEeecCC-
Q 011924 290 -----LCRLLNFMTEKVIICLLC----------LQHS---SQSPDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHL- 347 (475)
Q Consensus 290 -----~~~v~d~~~~~~~~~~~~----------i~~~---~~sp~g~---~l~~~~~dg~i~iwd~~~~~~~~~l~~h~- 347 (475)
.+..+|..+|+....... +... ...++|+ .+++++.+|.++++|..+|+.+.......
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 366677788877655431 1111 1123674 56778889999999999999887664221
Q ss_pred ------------CCe--------------------------EEEEEecCCCEEEEEe-----------------------
Q 011924 348 ------------DFS--------------------------FASAWHPNGVTFATGN----------------------- 366 (475)
Q Consensus 348 ------------~~v--------------------------~~~~~sp~g~~l~t~s----------------------- 366 (475)
.++ ..++++|+..+++..+
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 111 2357888777777654
Q ss_pred --------------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccC
Q 011924 367 --------------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 367 --------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
.++.|..||+.+ ++.+-.+.... .+.+..+...+..+++++.++.|+.||.++|+.+..+....
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTT-CCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceeccCccccCCCCCCeEEEEECCC-CCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 247899999976 56554444322 22222233345677779999999999999999988776433
Q ss_pred CC-eEEEEEcCCCCeEEEEEecC
Q 011924 433 GE-ISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 433 ~~-i~~l~fspdg~~l~~~~~D~ 454 (475)
+. -..+.+..+|+.++ ++.++
T Consensus 506 ~~~~~p~~~~~~G~~yv-~~~~G 527 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYI-GSMYG 527 (571)
T ss_dssp CCCSCCEEEEETTEEEE-EEEEC
T ss_pred CcEeeeEEEEECCEEEE-EEECC
Confidence 21 22344667776443 33343
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=0.00018 Score=73.89 Aligned_cols=296 Identities=15% Similarity=0.055 Sum_probs=166.0
Q ss_pred CCeEEEecC-CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCC
Q 011924 142 KHDVYLMSH-FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 142 ~~~v~~~~~-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
...||+... ..|+-++..+++..-........... +. ..... ..+++.+..+++++.+|.|..+|..+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~--~~~~~----~g~a~~~~~v~~~t~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR---PC--CDVVN----RGAAIYGDKVFFGTLDASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC---CS--SCSCC----CCCEEETTEEEEEETTTEEEEEESSSCC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc---cc--cccCC----CccEEECCEEEEEeCCCEEEEEECCCCC
Confidence 345666544 56888888887664333332111000 00 00000 1223466788888899999999998887
Q ss_pred ceEEEeeecCCC--CceeEEEEEeC-CCCCeEEEEEe------CCCeEEEEECCCCeeeeeeeccc--------------
Q 011924 221 VSFCSRTTYDDN--AITNAVEIYGS-PSGAVHFTASN------NDCGVRDFDMGKYQLSKHFRFPW-------------- 277 (475)
Q Consensus 221 ~~~~~~~~~~~~--~~v~~l~~~~s-~~g~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~-------------- 277 (475)
............ .......+... .+|+.++++++ .++.|..+|..+++.+-......
T Consensus 139 ~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~ 218 (582)
T 1flg_A 139 VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT 218 (582)
T ss_dssp EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred EEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence 665444322100 11111112111 13332355543 37899999999988776554210
Q ss_pred -------------------------------cEEeccCCceE------------------------------EEEEEeec
Q 011924 278 -------------------------------PVNVSSSYCII------------------------------LLCRLLNF 296 (475)
Q Consensus 278 -------------------------------~v~~s~~~~~l------------------------------~~~~v~d~ 296 (475)
.+.+.+....+ ..+..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 00111111111 23556677
Q ss_pred ccceEEEEeeee----------ee-EEEC---CCCc---EEEEEeCCCcEEEEECCCCceEEEeecCCC--Ce-------
Q 011924 297 MTEKVIICLLCL----------QH-SSQS---PDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHLD--FS------- 350 (475)
Q Consensus 297 ~~~~~~~~~~~i----------~~-~~~s---p~g~---~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~--~v------- 350 (475)
.+|+........ .. +.+. .+|+ .++.++.+|.++++|..+|+.+..+..... ..
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 378 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT 378 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC
Confidence 788777654311 11 2222 4563 677888999999999999998876653210 00
Q ss_pred ------------------------------------EEEEEecCCCEEEEEe----------------------------
Q 011924 351 ------------------------------------FASAWHPNGVTFATGN---------------------------- 366 (475)
Q Consensus 351 ------------------------------------~~~~~sp~g~~l~t~s---------------------------- 366 (475)
..++++|+..++++..
T Consensus 379 g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 458 (582)
T 1flg_A 379 GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIK 458 (582)
T ss_dssp CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred CCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeec
Confidence 1346677555555432
Q ss_pred -----CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe-EEEEE
Q 011924 367 -----QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SGISF 440 (475)
Q Consensus 367 -----~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~f 440 (475)
.+|.|..||+.+ ++.+-...... ++..-.....|.+++.++.|+.|+.||.++|+.+-++....+.. .-+.|
T Consensus 459 p~~~~~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y 536 (582)
T 1flg_A 459 RMYDDHVGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW 536 (582)
T ss_dssp ESCSSCSEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCCCCcceEEEEECCC-CCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence 257899999977 55544443322 22211122246678889999999999999999988877543322 23667
Q ss_pred cCCCCeEE
Q 011924 441 SPDTESLF 448 (475)
Q Consensus 441 spdg~~l~ 448 (475)
..+|+..+
T Consensus 537 ~~~G~qYv 544 (582)
T 1flg_A 537 EQDGEQYL 544 (582)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 77886443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-05 Score=71.04 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=122.2
Q ss_pred eEEEEEE-cCcEEEEEecCc--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV-KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~-~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
....|.+ ++.++++.|..| .|+.+|+.+.+......+ ....---.+++ .++.+++..-.++.+.+||..+.
T Consensus 22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~----~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVA----WRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEE----eCCEEEEEEeeCCEEEEEECCcC
Confidence 3557778 444555656654 899999998776643322 11111123444 34555666668899999999999
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
+.+.++..+.. ...+.+++..|+++..++.|.++|..+.+.+.++.-..
T Consensus 96 ~~~~ti~~~~~-------------------------------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 96 TPRARFRYPGE-------------------------------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EEEEEEECSSC-------------------------------CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred cEEEEEeCCCC-------------------------------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 99999985432 22344567777777778899999999999888876421
Q ss_pred -----CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-------------CCceEEEEEccCCCEEEEEc
Q 011924 348 -----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-------------LGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 348 -----~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-------------~~~v~~l~~spdg~~la~~~ 409 (475)
..+..+.|. +|+..+..-.+..|.+.|.++ ++.+..+... ....+.|+++|+++.|.+.+
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 345667765 676555554677999999987 7777776522 13567899999877666555
Q ss_pred C
Q 011924 410 P 410 (475)
Q Consensus 410 ~ 410 (475)
.
T Consensus 223 K 223 (243)
T 3mbr_X 223 K 223 (243)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.6e-05 Score=79.86 Aligned_cols=272 Identities=14% Similarity=0.091 Sum_probs=156.8
Q ss_pred CCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEec------CceEEEE
Q 011924 142 KHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGF------QGELICK 214 (475)
Q Consensus 142 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~------dg~i~vw 214 (475)
...||+.. ++.++-++..+++..-......+. . .......++ +.+..++++.. +|.|..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~--------~~~~~~~P~----v~~~~v~vg~~~~~~~~~g~v~a~ 183 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-K--------PYSITGAPR----VVKGKVIIGNGGAEYGVRGFVSAY 183 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTT-S--------SCBCCSCCE----EETTEEEECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-C--------cceecCCCE----EECCEEEEeCCCCCcCCCCEEEEE
Confidence 34566654 788999999888765433332110 0 000111222 12445555543 5899999
Q ss_pred eCCCCCceEEEeeecCCC----------------------------CceeEEEEEeCCCCCeEEEEEeCCC---------
Q 011924 215 HLDRPGVSFCSRTTYDDN----------------------------AITNAVEIYGSPSGAVHFTASNNDC--------- 257 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~----------------------------~~v~~l~~~~s~~g~~~l~s~s~dg--------- 257 (475)
|..+.+............ .....+++ .|.+.. ++.++.++
T Consensus 184 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~-vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 184 DADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDL-LYVGTGNGSPWNREVRS 260 (668)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTE-EEEECCCEESSCHHHHS
T ss_pred ECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEE--cCCCCE-EEEeCCCCCccccCCCC
Confidence 998887665444321110 01123455 676665 55665554
Q ss_pred ----------eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc---EEEEEe
Q 011924 258 ----------GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK---LLIIVG 324 (475)
Q Consensus 258 ----------~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~---~l~~~~ 324 (475)
.|..+|..+++.+.+++....-. |+....... . ...+..+|+ .+++++
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~-------------wd~~~~~~~----~--~~d~~~~G~~~~~v~~~~ 321 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS-------------WDFTATQQI----T--LAELNIDGKPRKVLMQAP 321 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC-------------SCCCCCSCE----E--EEEEEETTEEEEEEEECC
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCcc-------------ccccCCCCc----E--EEEeccCCcEEEEEEEEC
Confidence 48999999999888776321000 000000000 0 112223564 678888
Q ss_pred CCCcEEEEECCCCceEEEeecCCC------------Ce------------------------EEEEEecCCCEEEEEe--
Q 011924 325 DNPDGLLVDSMTGKTIASLCGHLD------------FS------------------------FASAWHPNGVTFATGN-- 366 (475)
Q Consensus 325 ~dg~i~iwd~~~~~~~~~l~~h~~------------~v------------------------~~~~~sp~g~~l~t~s-- 366 (475)
.+|.++++|..+|+.+........ ++ ..++++|+..+++...
T Consensus 322 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~ 401 (668)
T 1kv9_A 322 KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQE 401 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccc
Confidence 999999999999998754432110 00 1267888766665421
Q ss_pred ----------------------------------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 367 ----------------------------------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 367 ----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
.+|.|..||+.+ ++.+-...... ++....+...|.++++++.++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg 479 (668)
T 1kv9_A 402 VPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAG 479 (668)
T ss_dssp CCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTS
T ss_pred cceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCC-CCcCceeEeCCCEEEEECCcc
Confidence 237899999977 66554444332 333334455677889999999
Q ss_pred eEEEEECCCCeeEEEEeccCCCe-EEEEEcCCCC-eEEEE
Q 011924 413 FVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTE-SLFIG 450 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~~i-~~l~fspdg~-~l~~~ 450 (475)
.|++||.++|+.+..+....+.. .-+.+..+|+ +++++
T Consensus 480 ~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 480 QMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEE
Confidence 99999999999888776543211 2344556776 44443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-05 Score=74.60 Aligned_cols=220 Identities=11% Similarity=-0.026 Sum_probs=132.6
Q ss_pred EEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecC-----------------CCCceeEEEEEeCC-CCCeEEEEE
Q 011924 194 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-----------------DNAITNAVEIYGSP-SGAVHFTAS 253 (475)
Q Consensus 194 ~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-----------------~~~~v~~l~~~~s~-~g~~~l~s~ 253 (475)
++++ ++++++++..++.|..|+........ ...... .......+++ .+ +|. |+.+
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g~--l~v~ 97 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNNQ--LYIV 97 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTTE--EEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEE--cCCCCc--EEEE
Confidence 4555 66768888889999999876543221 111000 0123567777 76 554 4444
Q ss_pred eCCCeEEEEECCCCeeeeeee-c--c---ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeC-
Q 011924 254 NNDCGVRDFDMGKYQLSKHFR-F--P---WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGD- 325 (475)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~--~---~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~- 325 (475)
...+.|..++..++... .+. . . ...+ .+++.| +|++.++-..
T Consensus 98 d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~-----------------------------~i~~d~~~G~l~v~d~~~ 147 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLY-----------------------------AVTVDQRTGIVYFTDVST 147 (322)
T ss_dssp ETTTEEEEECTTCEECE-EEESEETTEECSCEE-----------------------------EEEECTTTCCEEEEESCS
T ss_pred ECCCCEEEEeCCCCEEE-EecccCCCCcccccc-----------------------------eEEEecCCCEEEEECCcc
Confidence 34556888887655432 221 1 0 1233 789999 9987776432
Q ss_pred ----------------CCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCC-ceEEEEe
Q 011924 326 ----------------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLS-ESVAVLK 387 (475)
Q Consensus 326 ----------------dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~-~~~~~~~ 387 (475)
.+.|..+|..+++...... .......++|+|+++.|+.+ ...+.|.+|++.... .....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~ 226 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV 226 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE
T ss_pred cccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE
Confidence 3678889987776433222 22345679999999866665 456899999986311 1122222
Q ss_pred cCCCceEEEEEccCCCEEEEEcC----------CCeEEEEECCCCeeEEEEeccC----CCeEEEEEcCCCCeEEEEEec
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEP----------ADFVHVYDVKSGYEKEQEIDFF----GEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~i~~l~fspdg~~l~~~~~D 453 (475)
...+ ...++++++|++.++... .+.|..+|. .++.+..+.... ..++++++. + ..|++++..
T Consensus 227 ~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~v~~~~ 302 (322)
T 2fp8_A 227 KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-D-GLLYIGTLF 302 (322)
T ss_dssp ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-T-TEEEEECSS
T ss_pred eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-C-CEEEEeecC
Confidence 2233 778999999986666544 467888886 476666665432 357777773 4 466666543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.2e-06 Score=85.53 Aligned_cols=294 Identities=13% Similarity=0.025 Sum_probs=162.8
Q ss_pred CCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCcccccccee-EEEEEEcCcEEEEEecCceEEEEeCCCC
Q 011924 142 KHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ-VSTLAVKDKLLVAGGFQGELICKHLDRP 219 (475)
Q Consensus 142 ~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~lvsg~~dg~i~vw~~~~~ 219 (475)
...||+. .++.|+-++..+++..-..+....... ........ -..+++.+..+++++.+|.|..+|..+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVK--------ARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGG--------GGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccc--------cccccccCCccceEEECCEEEEEcCCCEEEEEECCCC
Confidence 3456654 456788888887765433322211000 00000000 1123445678888889999999999888
Q ss_pred CceEEEeeecCC-CCce-eEEEEEeCCCCCeEEEEEe-----CCCeEEEEECCCCeeeeeeecc-c-cEE-eccCCceEE
Q 011924 220 GVSFCSRTTYDD-NAIT-NAVEIYGSPSGAVHFTASN-----NDCGVRDFDMGKYQLSKHFRFP-W-PVN-VSSSYCIIL 289 (475)
Q Consensus 220 ~~~~~~~~~~~~-~~~v-~~l~~~~s~~g~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~-~-~v~-~s~~~~~l~ 289 (475)
+........... ...+ ....+ . ++ .+++..+ .++.|..+|..+++.+..+... . +.. +.. .....
T Consensus 138 ~~~W~~~~~~~~~~~~~~~~P~v--~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~-~~~~~ 212 (668)
T 1kv9_A 138 KAIWSQQTTDPAKPYSITGAPRV--V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH-PELRE 212 (668)
T ss_dssp CEEEEEECSCTTSSCBCCSCCEE--E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS-HHHHH
T ss_pred CEeeeeccCCCCCcceecCCCEE--E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc-ccccc
Confidence 766544432110 0111 11111 1 34 3233322 2589999999999998877531 1 100 000 00000
Q ss_pred EE------EEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC-------------------cEEEEECCCCceEEEee
Q 011924 290 LC------RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP-------------------DGLLVDSMTGKTIASLC 344 (475)
Q Consensus 290 ~~------~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg-------------------~i~iwd~~~~~~~~~l~ 344 (475)
.. .+|.... .......++++|.+.++++++.++ .|..+|..+|+.+..++
T Consensus 213 ~~~~~~g~~~w~~~~-----gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 213 AAKTWQGDQYWKLGG-----GGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHTTCCSSCHHHHCE-----ECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccccCCccceeeeCC-----CCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 00 0000000 000111468888888888887665 39999999999988876
Q ss_pred c--CC-------CCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCCceEEEEecCC-----------C-c--------
Q 011924 345 G--HL-------DFSFASAWHPNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNL-----------G-A-------- 392 (475)
Q Consensus 345 ~--h~-------~~v~~~~~sp~g~---~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-----------~-~-------- 392 (475)
. |. .+.....+..+|+ .++.++.+|.+.++|.++ ++.+....... + +
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccccccccccccccccccCCccccccccc
Confidence 4 22 2222233334675 688999999999999977 66553332111 0 0
Q ss_pred ----------------eEEEEEccCCCEEEEE------------------------------------cCCCeEEEEECC
Q 011924 393 ----------------IRSIRYTSDGRYMATA------------------------------------EPADFVHVYDVK 420 (475)
Q Consensus 393 ----------------v~~l~~spdg~~la~~------------------------------------~~dg~i~iwd~~ 420 (475)
-..++++|+...+++. ..+|.|..||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 0126788876665541 123789999999
Q ss_pred CCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 421 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+|+.+-+.... .+.....+...+..|++++.|+.
T Consensus 447 tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~ 480 (668)
T 1kv9_A 447 KQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQ 480 (668)
T ss_dssp TTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE
T ss_pred CCcEEEEccCC-CCCcCceeEeCCCEEEEECCccc
Confidence 99887666533 33334445556778888866554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00017 Score=77.17 Aligned_cols=221 Identities=10% Similarity=-0.026 Sum_probs=142.4
Q ss_pred cceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeee---cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 188 TQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 188 ~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
....|.++.. ....|-.|+.++.|..++............. .-....|.++.. .++|. +-.|+.++.|..|+
T Consensus 308 ~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~--d~~g~--lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 308 SQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE--DKDKN--LWIGTNDGGLNLYN 383 (795)
T ss_dssp SSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE--CTTSC--EEEEESSSCEEEEC
T ss_pred CCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE--CCCCC--EEEEECCCCeEEEc
Confidence 3457899988 4456777888788888886544322110000 012345777776 77775 55677887899999
Q ss_pred CCCCeeeeeeec---------cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 264 MGKYQLSKHFRF---------PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 264 ~~~~~~~~~~~~---------~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
..+++....... ...|. ++...++|++|.+|+.++-|.++|.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~-----------------------------~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIK-----------------------------AVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEE-----------------------------EEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCCCcEEEEecCCCCcccCCCCccEE-----------------------------EEEEcCCCCEEEEEeCcCceeEEeC
Confidence 877654332211 12344 8888888885666777777999998
Q ss_pred CCCceEEEee----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-------CCCceEEEEEccCCC
Q 011924 335 MTGKTIASLC----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-------NLGAIRSIRYTSDGR 403 (475)
Q Consensus 335 ~~~~~~~~l~----~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~spdg~ 403 (475)
.+++...... .....|.++...++|++.+.. .. -+.+||..+ ++ ...+.. ....|.++...++|+
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ-RS-FTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT-TE-EEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC-Ce-EEEccccccccccCCceEEEEEECCCCC
Confidence 8876443221 134578999998888765554 44 488899864 33 222221 235789999999998
Q ss_pred EEEEEcCCCeEEEEECCCCeeEEEEe-------ccCCCeEEEEEcCCCCeEEE
Q 011924 404 YMATAEPADFVHVYDVKSGYEKEQEI-------DFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 404 ~la~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~fspdg~~l~~ 449 (475)
+.+... . -|..||..++.. .+. .....|.++..+++|...+.
T Consensus 511 lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 511 LWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG 559 (795)
T ss_dssp EEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred EEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 666554 4 488999877654 222 12346899999999875543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00054 Score=64.59 Aligned_cols=230 Identities=10% Similarity=0.013 Sum_probs=136.5
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cC-cEEEEEecCceEEEEeCCCC--
Q 011924 145 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD-KLLVAGGFQGELICKHLDRP-- 219 (475)
Q Consensus 145 v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~-~~lvsg~~dg~i~vw~~~~~-- 219 (475)
|+++....|...+..+.....++.. + ....++++ .+ .++++-...+.|..+++...
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~~~~~-----------------~--~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~ 64 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTSLIPN-----------------L--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECS-----------------C--SSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred EEEECCCeEEEEECCCcceEehhcC-----------------C--CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC
Confidence 5556666677777665544433211 1 13457777 33 45556566789999988751
Q ss_pred -CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecc
Q 011924 220 -GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFM 297 (475)
Q Consensus 220 -~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~ 297 (475)
... .......-.....+++ .+.+..++++-...+.|.++++........+. ......
T Consensus 65 ~~~~--~~~~~~~~~~p~glav--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~----------------- 123 (316)
T 1ijq_A 65 VSSY--DTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR----------------- 123 (316)
T ss_dssp ---C--EEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-----------------
T ss_pred Cccc--EEEEeCCCCCcCEEEE--eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcc-----------------
Confidence 111 1122222233467777 66555556776778899999986543322222 223344
Q ss_pred cceEEEEeeeeeeEEECCCCcEEEEEeC-C-CcEEEEECCCCceEEEe-ecCCCCeEEEEEecCCCEEEEEe-CCCeEEE
Q 011924 298 TEKVIICLLCLQHSSQSPDGKLLIIVGD-N-PDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATGN-QDKTCRI 373 (475)
Q Consensus 298 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d-g~i~iwd~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~i 373 (475)
.++++|.+..|..+.. . +.|..+++. |+....+ ...-.....++++|++..|+.+. ..+.|..
T Consensus 124 ------------~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 124 ------------AIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp ------------EEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ------------eEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 8899996665555443 2 678888875 4444443 23345688999999776666554 5678999
Q ss_pred EECCCCCceEEEE-ec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec
Q 011924 374 WDLRNLSESVAVL-KG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 374 wd~~~~~~~~~~~-~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
+|+.. .. .+.+ .. .......+++. .+.++++-...+.|..++..+|..+..+..
T Consensus 191 ~d~dg-~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 191 IDVNG-GN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp EETTS-CS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EecCC-Cc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 99863 22 2223 21 22345678885 455666666778999999877776655543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-06 Score=87.24 Aligned_cols=185 Identities=10% Similarity=0.020 Sum_probs=108.6
Q ss_pred ceeEEEEEeC-CCCCeEEEEEeCCC----eEEEEECCCC-eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeee
Q 011924 234 ITNAVEIYGS-PSGAVHFTASNNDC----GVRDFDMGKY-QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLC 307 (475)
Q Consensus 234 ~v~~l~~~~s-~~g~~~l~s~s~dg----~v~iwd~~~~-~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~ 307 (475)
.+....| | |+|+.++++.+.+| +|+++|+.++ +.+.. .......
T Consensus 175 ~~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~--------------------------- 224 (751)
T 2xe4_A 175 DVMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNG--------------------------- 224 (751)
T ss_dssp EEEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECS---------------------------
T ss_pred EEeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCcee---------------------------
Confidence 3556677 9 99998666655443 5999999988 63211 0011112
Q ss_pred eeeEEECCCCcEEEEEeCC-----CcEEEEECCCCce--EEEee-cCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEC
Q 011924 308 LQHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKT--IASLC-GHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDL 376 (475)
Q Consensus 308 i~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~~~~--~~~l~-~h~~~v~~~~~sp~g~~l~t~s~---dg~v~iwd~ 376 (475)
.++|+|||+.|+....+ ..|+++++.++.. ...+. ........+.|+|||++|+..+. ...|.++|+
T Consensus 225 --~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 225 --EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp --CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred --eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 67899999888877654 3588888877642 23333 23345678899999998887663 346888998
Q ss_pred CCCCceE--EEEe-cCCCceEEEEEccCCCEEE-EEcCC----CeEEEEECCCCeeEEE-EeccCC--CeEEEEEcCCCC
Q 011924 377 RNLSESV--AVLK-GNLGAIRSIRYTSDGRYMA-TAEPA----DFVHVYDVKSGYEKEQ-EIDFFG--EISGISFSPDTE 445 (475)
Q Consensus 377 ~~~~~~~--~~~~-~~~~~v~~l~~spdg~~la-~~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~l~fspdg~ 445 (475)
....... ..+. ...+...++.|+. |+.|+ ....+ ..|..+++.++..... +..+.. .+.++.+ .+.
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~ 379 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSN 379 (751)
T ss_dssp SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSS
T ss_pred CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECC
Confidence 7632222 3333 3334455555544 55444 44333 3677788765322222 333443 3445554 455
Q ss_pred eEEEEEec
Q 011924 446 SLFIGVWD 453 (475)
Q Consensus 446 ~l~~~~~D 453 (475)
.|+.....
T Consensus 380 ~lv~~~~~ 387 (751)
T 2xe4_A 380 YLVVAGRR 387 (751)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 66655443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00037 Score=65.81 Aligned_cols=204 Identities=6% Similarity=-0.025 Sum_probs=124.8
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
...+|+| .+.++++-...+.|..+++....... ......-.....+++ .+.+..++++-...+.|.++++...
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~~~l~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EEEEECCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EEEcCCCCCccEEEE--EcCCCeEEEEECCCCEEEEEECCCC
Confidence 4567788 35566666677899999887553211 111112223466777 6655555777667789999998653
Q ss_pred eeeeee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEe-
Q 011924 268 QLSKHF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASL- 343 (475)
Q Consensus 268 ~~~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l- 343 (475)
.....+ ......+ .+++.|.+..|..+. ..+.|...++. |+....+
T Consensus 112 ~~~~l~~~~~~~P~-----------------------------giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~ 161 (318)
T 3sov_A 112 LRKVLFWQELDQPR-----------------------------AIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII 161 (318)
T ss_dssp SCEEEECSSCSSEE-----------------------------EEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred cEEEEEeCCCCCcc-----------------------------EEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE
Confidence 322222 1222334 888998655555554 35778888875 3333333
Q ss_pred ecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 344 CGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
...-.....++|+|++..|+.+ +..+.|..+|+.. ......+.+.......+++.. +.++.+-...+.|..++..+|
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 3334567899999966666655 4567899999863 222223333344566788753 345556666789999998777
Q ss_pred eeEEEEec
Q 011924 423 YEKEQEID 430 (475)
Q Consensus 423 ~~~~~~~~ 430 (475)
.....+..
T Consensus 240 ~~~~~i~~ 247 (318)
T 3sov_A 240 EGLREIHS 247 (318)
T ss_dssp CSCEEEEC
T ss_pred CceEEEeC
Confidence 76555543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.46 E-value=0.0015 Score=63.83 Aligned_cols=246 Identities=9% Similarity=0.000 Sum_probs=145.5
Q ss_pred CCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceEEEEeCCC
Q 011924 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDR 218 (475)
Q Consensus 142 ~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~ 218 (475)
...|+++....|...+........++. ....+.+|+| .+.++++-...+.|..+++..
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-------------------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-------------------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred cceeEEeccceeEEEccCCcceeEecc-------------------ccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 345666777777777765544433321 0124567787 344555555678898888864
Q ss_pred CC--ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEee
Q 011924 219 PG--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLN 295 (475)
Q Consensus 219 ~~--~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d 295 (475)
.. ... ..+..........|++ .+.+..++++-...+.|.+.++........+. ......
T Consensus 144 ~~~~~~~-~~~~~~~~~~p~glav--D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~--------------- 205 (400)
T 3p5b_L 144 AHGVSSY-DTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR--------------- 205 (400)
T ss_dssp ----CCC-EEEECSSCSCEEEEEE--ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEE---------------
T ss_pred CCCCCcc-eEEEeCCCCCcccEEE--EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcc---------------
Confidence 22 111 1222223344567887 66555567777778899999987554333332 222344
Q ss_pred cccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEE
Q 011924 296 FMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCR 372 (475)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~ 372 (475)
.+++.|.+..|..+. ..+.|...++........+...-.....++++|++..|+.+. ..+.|.
T Consensus 206 --------------~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~ 271 (400)
T 3p5b_L 206 --------------AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271 (400)
T ss_dssp --------------EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred --------------eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence 889999665555553 247788888764333333343446789999999777666664 467899
Q ss_pred EEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 373 IWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 373 iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
.+|+.. ......+.. .......+++. .+.++.+....+.|..+|..+|..+..+......+.++..
T Consensus 272 ~~d~dG-~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 272 SIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEETTS-CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEeCCC-CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 999864 222222222 22345577773 3445556666788999998888766666544444555543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00061 Score=72.89 Aligned_cols=219 Identities=11% Similarity=0.055 Sum_probs=141.1
Q ss_pred ceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeec-------CCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 189 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-------DDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 189 ~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
...|.++.. ....|..|+.. .|.+++....... .... -....|.++.. .++|. +-.|+.++.|.
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~--D~~g~--lWigt~~~Gl~ 333 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFA---SYSSNPVENGSLSQRSVRSIFM--DSQGG--MWLGTYFGGLN 333 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEE---EECCCTTSTTSCSSSCEEEEEE--CTTSC--EEEEESSSCEE
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEE---EEecCCCCCCCCCCCcEEEEEE--eCCcC--EEEEECCCCeE
Confidence 346889988 34556666665 5888887644322 1111 12345777777 88886 56677778899
Q ss_pred EEECCCCeeeeeeec--------cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEE
Q 011924 261 DFDMGKYQLSKHFRF--------PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV 332 (475)
Q Consensus 261 iwd~~~~~~~~~~~~--------~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iw 332 (475)
.|+..+.... .+.. ...|. ++...++|.+- +|+.++-|..|
T Consensus 334 ~~~~~~~~~~-~~~~~~~~~~l~~~~V~-----------------------------~i~~d~~g~lW-iGt~~~Gl~~~ 382 (795)
T 4a2l_A 334 YYHPIRNRFK-NIRNIPYKNSLSDNVVS-----------------------------CIVEDKDKNLW-IGTNDGGLNLY 382 (795)
T ss_dssp EECGGGGSSE-EECCCTTSSSCSCSSEE-----------------------------EEEECTTSCEE-EEESSSCEEEE
T ss_pred EeCCCcccce-EEcCCCCCCCCCCCeeE-----------------------------EEEECCCCCEE-EEECCCCeEEE
Confidence 9987654432 2211 22344 88888888755 46677679999
Q ss_pred ECCCCceEEEeec--------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-----CCCceEEEEEc
Q 011924 333 DSMTGKTIASLCG--------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-----NLGAIRSIRYT 399 (475)
Q Consensus 333 d~~~~~~~~~l~~--------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~-----~~~~v~~l~~s 399 (475)
+..+++....... ....|.+++..+++++|..|+.++-|.+||..+ ++ ...+.. ....|.++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l~~~~v~~i~~d 460 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQLVNENVYAILPD 460 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCCSCSCEEEEEEC
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCcCCCeeEEEEEC
Confidence 9887764432211 235789999988888577777777799999865 33 333321 23578999999
Q ss_pred cCCCEEEEEcCCCeEEEEECCCCeeEEEEec------cCCCeEEEEEcCCCCeEEEE
Q 011924 400 SDGRYMATAEPADFVHVYDVKSGYEKEQEID------FFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~fspdg~~l~~~ 450 (475)
++|++.+... .| |.+||..++........ ....|.++...++|+..+.+
T Consensus 461 ~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 461 GEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp SSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred CCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 9998665544 44 99999887654322111 12568999999988755433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00034 Score=66.01 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=114.5
Q ss_pred eEEEEEEc--CcEEEEEecCceEEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCC-CCCeEEEEEeC-----------
Q 011924 191 QVSTLAVK--DKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSP-SGAVHFTASNN----------- 255 (475)
Q Consensus 191 ~v~~l~~~--~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~-~g~~~l~s~s~----------- 255 (475)
....++++ +..|+.+...+.|..++..............+ .....+.+++ .+ +|.. +++...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~--d~~~G~l-~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTV--DQRTGIV-YFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEE--CTTTCCE-EEEESCSSCCTTCHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEE--ecCCCEE-EEECCccccccccccee
Confidence 35677773 45666665555677777653222211111111 1123567777 88 8864 444322
Q ss_pred ------CCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCc
Q 011924 256 ------DCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPD 328 (475)
Q Consensus 256 ------dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~ 328 (475)
.+.|..||..+++...........+ .++++|+|+.|.++ ...+.
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~-----------------------------gia~~~dg~~lyv~d~~~~~ 208 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKELHVPG-----------------------------GAEVSADSSFVLVAEFLSHQ 208 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEESCCC-----------------------------EEEECTTSSEEEEEEGGGTE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCCccCc-----------------------------ceEECCCCCEEEEEeCCCCe
Confidence 3567777776655432222111223 78999999876665 45688
Q ss_pred EEEEECCCCc--eEEEeecCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEECCCCCceEEEEecCC----Cc
Q 011924 329 GLLVDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNL----GA 392 (475)
Q Consensus 329 i~iwd~~~~~--~~~~l~~h~~~v~~~~~sp~g~~l~t~s~----------dg~v~iwd~~~~~~~~~~~~~~~----~~ 392 (475)
|.++++.... ....+....+ ...+++.++|++.++... .+.|..+|.. ++.+..+.... ..
T Consensus 209 I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~ 285 (322)
T 2fp8_A 209 IVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEH 285 (322)
T ss_dssp EEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSC
T ss_pred EEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCcccc
Confidence 9999987421 1222221223 788999999987766644 4568888863 56666665432 34
Q ss_pred eEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 393 IRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
++.+++ .+|+++++....+.|.++++..
T Consensus 286 ~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 286 FEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 667776 4666555555678899999764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00012 Score=75.21 Aligned_cols=250 Identities=9% Similarity=0.054 Sum_probs=149.8
Q ss_pred cCcEEEEEec-CceEEEEeC-CCCCceEEEeeecCCC--------CceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 198 KDKLLVAGGF-QGELICKHL-DRPGVSFCSRTTYDDN--------AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 198 ~~~~lvsg~~-dg~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+..+++++. ++.|..+|. .+.+............ .....+.+ .+.. ++.++.|+.|..+|..++
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQ-IVKKQANGHLLALDAKTG 135 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTE-EEEECTTSEEEEEETTTC
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCE-EEEEeCCCEEEEEECCCC
Confidence 3556666666 889999998 7777655433221100 00111233 2333 667778999999999999
Q ss_pred eeeeeeeccc-----cEEecc---CCceE-----------EEEEEeecccceEEEEeeee--------------------
Q 011924 268 QLSKHFRFPW-----PVNVSS---SYCII-----------LLCRLLNFMTEKVIICLLCL-------------------- 308 (475)
Q Consensus 268 ~~~~~~~~~~-----~v~~s~---~~~~l-----------~~~~v~d~~~~~~~~~~~~i-------------------- 308 (475)
+.+..+.... .+..+| .+.++ ..+..+|..+|+.+......
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 9887665321 222111 22222 14677888888877654421
Q ss_pred ----------------------eeEEECCCCcEEEEEeCC----------------CcEEEEECCCCceEEEeec--CC-
Q 011924 309 ----------------------QHSSQSPDGKLLIIVGDN----------------PDGLLVDSMTGKTIASLCG--HL- 347 (475)
Q Consensus 309 ----------------------~~~~~sp~g~~l~~~~~d----------------g~i~iwd~~~~~~~~~l~~--h~- 347 (475)
..+++.+...++.++..+ +.|..+|..+|+.+..++. |.
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 124566766667666532 2599999999999887763 21
Q ss_pred -------CCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCCceEEEEecCC-------------Cce-----------
Q 011924 348 -------DFSFASAWHPNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNL-------------GAI----------- 393 (475)
Q Consensus 348 -------~~v~~~~~sp~g~---~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~-------------~~v----------- 393 (475)
.++. +...++|+ .++.++.+|.+.++|..+ ++.+-...... .++
T Consensus 296 ~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 296 WDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp SCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22334774 677888999999999977 66555443211 011
Q ss_pred ---------------EEEEEccCCCEEEEEc-------------------------------------CCCeEEEEECCC
Q 011924 394 ---------------RSIRYTSDGRYMATAE-------------------------------------PADFVHVYDVKS 421 (475)
Q Consensus 394 ---------------~~l~~spdg~~la~~~-------------------------------------~dg~i~iwd~~~ 421 (475)
..++++|+...|++.. .++.|..||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 2467888877766653 347899999999
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
++.+-++... ..+.+..+...+..+++++.|+.
T Consensus 454 G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~ 486 (571)
T 2ad6_A 454 GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGY 486 (571)
T ss_dssp CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSE
T ss_pred CCEEEEecCC-CCccceeEEECCCEEEEEcCCCe
Confidence 9877665432 22222223334556776665543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00033 Score=67.12 Aligned_cols=214 Identities=10% Similarity=-0.022 Sum_probs=129.2
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP 278 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (475)
.+|+.+. ...|+..++...... ..... ......++| ++.+..++++-...+.|..+++........+. ....
T Consensus 45 ~~ll~~~-~~~I~~i~~~g~~~~---~~~~~-~~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~ 117 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPHRSEYT---LLLNN-LENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 117 (349)
T ss_dssp CEEEEEC-BSCEEEECTTSCCEE---EEECS-CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred ceeEeec-ccceEEEeCCCCeeE---EeecC-CCceEEEEE--eccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC
Confidence 3444443 345777776544322 22222 233577888 77666667777778899999987654332222 1122
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
.. .+++.+.+ ++.++-...+.|.+.++........+.........++++|
T Consensus 118 p~-----------------------------glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp 168 (349)
T 3v64_C 118 PG-----------------------------GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP 168 (349)
T ss_dssp CC-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEET
T ss_pred cc-----------------------------EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEec
Confidence 23 78898854 4445555677899999864443333444446789999999
Q ss_pred CCCEEEEE-eCC-CeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEeccCC
Q 011924 358 NGVTFATG-NQD-KTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 358 ~g~~l~t~-s~d-g~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
.+..|+.. ... +.|..+++.. .....+ .........++++|++..|+.+ ...+.|..+|+........+.....
T Consensus 169 ~~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~ 246 (349)
T 3v64_C 169 MEGTIYWTDWGNTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP 246 (349)
T ss_dssp TTTEEEEEECSSSCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred CcCeEEEeccCCCCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC
Confidence 65555544 344 7888888853 333333 2233457899999877666655 4567899999865433323333345
Q ss_pred CeEEEEEcCCCCeEEEEEec
Q 011924 434 EISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 434 ~i~~l~fspdg~~l~~~~~D 453 (475)
...++++. +..|+.+.+.
T Consensus 247 ~P~giav~--~~~ly~td~~ 264 (349)
T 3v64_C 247 HPFAITVF--EDSLYWTDWH 264 (349)
T ss_dssp SEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEE--CCEEEEecCC
Confidence 67888883 3466666543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00049 Score=70.73 Aligned_cols=239 Identities=10% Similarity=-0.010 Sum_probs=141.5
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCC-C-CceeEEEEEeCCCCCeEEEEEe------CCCeEEEEECCCCeeeeee
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDD-N-AITNAVEIYGSPSGAVHFTASN------NDCGVRDFDMGKYQLSKHF 273 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~s~~g~~~l~s~s------~dg~v~iwd~~~~~~~~~~ 273 (475)
|++++.+|.|..+|..+.+........... . .......+ . ++ . +++++ .++.|+.+|..+++.+-.+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~-~g-~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--V-KD-K-VIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--E-TT-E-EEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--E-CC-E-EEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 788888999999999887766543332100 0 11111122 1 34 3 44443 3799999999999988766
Q ss_pred eccccE------------------------------------------EeccCCceE----------------------E
Q 011924 274 RFPWPV------------------------------------------NVSSSYCII----------------------L 289 (475)
Q Consensus 274 ~~~~~v------------------------------------------~~s~~~~~l----------------------~ 289 (475)
....+. .+.+....+ .
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 532111 111111111 1
Q ss_pred EEEEeecccceEEEEeeeee----------e-EEEC---CCC---cEEEEEeCCCcEEEEECCCCceEEEeecCC-----
Q 011924 290 LCRLLNFMTEKVIICLLCLQ----------H-SSQS---PDG---KLLIIVGDNPDGLLVDSMTGKTIASLCGHL----- 347 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~----------~-~~~s---p~g---~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~----- 347 (475)
.+..+|..+|+......... . +.+. .+| +.++.++.+|.++++|..+|+.+.......
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence 45667778887776544211 1 1122 467 567778899999999999999887654211
Q ss_pred --------CCe--------------------------EEEEEecCCCEEEEEe---------------------------
Q 011924 348 --------DFS--------------------------FASAWHPNGVTFATGN--------------------------- 366 (475)
Q Consensus 348 --------~~v--------------------------~~~~~sp~g~~l~t~s--------------------------- 366 (475)
.++ ..++++|+..++++..
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 011 1356777766665532
Q ss_pred ------------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 367 ------------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 367 ------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
..|.|.-||+.+ ++.+-...... ++..-.+...|.+++.++.|+.|+.||.++|+.+-++....+.
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAIT-GDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTT-CCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccCCcCCcccCCCcCeEEEEECCC-CCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 346788888876 55444433211 1111112234667778999999999999999998887643322
Q ss_pred -eEEEEEcCCCCeE
Q 011924 435 -ISGISFSPDTESL 447 (475)
Q Consensus 435 -i~~l~fspdg~~l 447 (475)
..-+.+..+|+..
T Consensus 517 ~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 517 IGYPMTYTHKGTQY 530 (599)
T ss_dssp CSCCEEEEETTEEE
T ss_pred EeccEEEEeCCEEE
Confidence 2335566788643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-05 Score=82.24 Aligned_cols=251 Identities=9% Similarity=-0.048 Sum_probs=141.1
Q ss_pred cCcEEEEEecCc-----------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe-CCCeEEEEECC
Q 011924 198 KDKLLVAGGFQG-----------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN-NDCGVRDFDMG 265 (475)
Q Consensus 198 ~~~~lvsg~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s-~dg~v~iwd~~ 265 (475)
++++++.||.++ .+.+||+.+............+.....++++ ..+|+. ++.|+ .+..+.+||..
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~--~~~g~l-yv~GG~~~~~v~~yd~~ 273 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM--DGNGQI-VVTGGNDAKKTSLYDSS 273 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE--CTTSCE-EEECSSSTTCEEEEEGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccC--CCCCCE-EEeCCCCCCceEEecCc
Confidence 788888887543 6888998876644322222223333344555 678875 66665 45689999988
Q ss_pred CCeeeeeee--cc---ccEEeccCCceE------------EEEEEeecccceEEEEe----eee----eeEEECCCCcEE
Q 011924 266 KYQLSKHFR--FP---WPVNVSSSYCII------------LLCRLLNFMTEKVIICL----LCL----QHSSQSPDGKLL 320 (475)
Q Consensus 266 ~~~~~~~~~--~~---~~v~~s~~~~~l------------~~~~v~d~~~~~~~~~~----~~i----~~~~~sp~g~~l 320 (475)
+.+....-. .+ ..+.+.+++.+. ..+.+||+.+++..... ..+ ....+..++..+
T Consensus 274 t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy 353 (656)
T 1k3i_A 274 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 353 (656)
T ss_dssp GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceE
Confidence 765433211 11 112222233333 24678888877654321 000 011123455666
Q ss_pred EEEeCCC---------cEEEEECCCCceEEEeecCC---------CCeEEEEEec-CCCEEEEEeCCC-----------e
Q 011924 321 IIVGDNP---------DGLLVDSMTGKTIASLCGHL---------DFSFASAWHP-NGVTFATGNQDK-----------T 370 (475)
Q Consensus 321 ~~~~~dg---------~i~iwd~~~~~~~~~l~~h~---------~~v~~~~~sp-~g~~l~t~s~dg-----------~ 370 (475)
+.++.++ .+..||..+.........+. ....++.+.. ++++++.|+.++ .
T Consensus 354 v~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 433 (656)
T 1k3i_A 354 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI 433 (656)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred EEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceE
Confidence 6665443 45678877665433332221 1234455544 778888887542 6
Q ss_pred EEEEECCCCCceEEEE--ecCCCc-eEEEEEccCCCEEEEEcCC-----------CeEEEEECCCCeeEEEE--eccCCC
Q 011924 371 CRIWDLRNLSESVAVL--KGNLGA-IRSIRYTSDGRYMATAEPA-----------DFVHVYDVKSGYEKEQE--IDFFGE 434 (475)
Q Consensus 371 v~iwd~~~~~~~~~~~--~~~~~~-v~~l~~spdg~~la~~~~d-----------g~i~iwd~~~~~~~~~~--~~~~~~ 434 (475)
|.+||... ..-.... ..+... -.+++..|+|+++++|+.+ ..+.+||..+.+-...- ......
T Consensus 434 v~~yd~~~-~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~ 512 (656)
T 1k3i_A 434 ITLGEPGT-SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVY 512 (656)
T ss_dssp EECCSTTS-CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCT
T ss_pred EEcCCCCC-CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCcccc
Confidence 78888764 3322222 111111 2345667899999998854 46899999876533211 111223
Q ss_pred eEEEEEcCCCCeEEEEEe
Q 011924 435 ISGISFSPDTESLFIGVW 452 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~ 452 (475)
.....+.|+|+.+++|+.
T Consensus 513 hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 513 HSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TEEEEECTTSCEEEEECC
T ss_pred ccHhhcCCCcEEEecCCC
Confidence 345667899999998875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00036 Score=68.85 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=127.9
Q ss_pred EEEEEc---CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC----eEEEEECC
Q 011924 193 STLAVK---DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMG 265 (475)
Q Consensus 193 ~~l~~~---~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg----~v~iwd~~ 265 (475)
..|+++ ++.|+++...+.|+.+++...... .+. ........|++ +++|+.++++....+ .+..++.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---~~~-~~~~~P~~ia~--d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---TVY-SGLSKVRTICW--THEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---EEE-CCCSCEEEEEE--CTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---EEe-cCCCCcceEEE--eCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 344553 455666555588888888754433 222 23345678888 999986566654332 2333332
Q ss_pred CCeee--eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 266 KYQLS--KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 266 ~~~~~--~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
.+... ..+....... .++++| +|.++++-...+.|..++...+.....
T Consensus 213 ~g~~~~~~~l~~~~~p~-----------------------------giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCN-----------------------------GAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp GGTSCSEEEEEECSSCC-----------------------------CEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceeeeeeeccCCCce-----------------------------EEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 22221 1121111122 788999 777777666778999999876654222
Q ss_pred ee-cCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC-Cce--EEEEecC---------------CCceE-EEEEc--
Q 011924 343 LC-GHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNL-SES--VAVLKGN---------------LGAIR-SIRYT-- 399 (475)
Q Consensus 343 l~-~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~-~~~--~~~~~~~---------------~~~v~-~l~~s-- 399 (475)
.. +.......++|+|+|++|+.+ ...+.|..++.... +.. +..+.+. -.... .++..
T Consensus 264 ~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~ 343 (430)
T 3tc9_A 264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNP 343 (430)
T ss_dssp EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECG
T ss_pred EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccc
Confidence 22 122457889999999955554 45788999887531 111 2222221 01123 45553
Q ss_pred ------cCCCEEEEEcCCCeEEEEECCCCeeEEEEecc------------------CCCeEEEEEcCCCCeEEEEEec
Q 011924 400 ------SDGRYMATAEPADFVHVYDVKSGYEKEQEIDF------------------FGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 400 ------pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~l~fspdg~~l~~~~~D 453 (475)
++|.+.++=...+.|+.++ .+|... .+.+. .....+|+++|++..|+++-..
T Consensus 344 ~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 344 AYKGSSDEYDFYFCDRENHCIRILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp GGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCeEEEEECCCcEEEEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 4466666666678899999 556433 33221 1258899999965566666443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00049 Score=66.88 Aligned_cols=215 Identities=10% Similarity=-0.025 Sum_probs=130.4
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cccc
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP 278 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~ 278 (475)
.+|+.+. ...|+..++...... .+.. .......++| .+.+..++++-...+.|..+++........+. ....
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~---~~~~-~~~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYT---LLLN-NLENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCE---EEEC-SCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC
T ss_pred ceeEeec-CccceeeccCCCcEE---EEec-CCCccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC
Confidence 3444443 456777787654433 2222 2234567888 77666667777778899999987654333222 1112
Q ss_pred EEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEec
Q 011924 279 VNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357 (475)
Q Consensus 279 v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp 357 (475)
.. .+++.+.+. +.++-...+.|.+.++........+.........++++|
T Consensus 161 p~-----------------------------glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp 211 (386)
T 3v65_B 161 PG-----------------------------GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP 211 (386)
T ss_dssp CC-----------------------------CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET
T ss_pred cc-----------------------------EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc
Confidence 23 778888544 445555567888888764443333444446789999999
Q ss_pred CCCEEEEEeC-C-CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 358 NGVTFATGNQ-D-KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 358 ~g~~l~t~s~-d-g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
.+..|+.+.. . +.|..+++.. ................|+|+|++..|+.+ +..+.|..+|+........+......
T Consensus 212 ~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred CCCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 6665555543 4 6788888853 22222333334457899999877666555 45678999997644333333333456
Q ss_pred eEEEEEcCCCCeEEEEEec
Q 011924 435 ISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D 453 (475)
..+|++. +..|+.+.+.
T Consensus 291 P~giav~--~~~ly~td~~ 307 (386)
T 3v65_B 291 PFAITVF--EDSLYWTDWH 307 (386)
T ss_dssp EEEEEEE--TTEEEEEETT
T ss_pred ceEEEEE--CCEEEEeeCC
Confidence 7888883 3466665543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0022 Score=60.35 Aligned_cols=211 Identities=9% Similarity=-0.064 Sum_probs=126.7
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC---eeeee-ee-cc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---QLSKH-FR-FP 276 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~---~~~~~-~~-~~ 276 (475)
|+.+. ...|+..++....... +.. ......+++| ++.+..++++-...+.|..+++... ..... +. ..
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~---~~~-~~~~p~g~~~--d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTS---LIP-NLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEE---EEC-SCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEC-CCeEEEEECCCcceEe---hhc-CCCceEEEEE--EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 44443 3568888887655432 222 2234567777 8776666777777889999998751 21111 11 11
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAW 355 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~ 355 (475)
.... .+++++.+ ++.++-...+.|.++++........+.........+++
T Consensus 77 ~~p~-----------------------------glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iav 127 (316)
T 1ijq_A 77 QAPD-----------------------------GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127 (316)
T ss_dssp SCCC-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred CCcC-----------------------------EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEe
Confidence 1223 78888744 44455566788999998644333333334457889999
Q ss_pred ecCCCEEEEEeCC--CeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEEEec-
Q 011924 356 HPNGVTFATGNQD--KTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID- 430 (475)
Q Consensus 356 sp~g~~l~t~s~d--g~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~- 430 (475)
+|.+..|+.+... +.|...++. +.....+ .........++++|++..|+.+. ..+.|..+|+... ....+..
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~ 204 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILED 204 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEEC
T ss_pred CCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeec
Confidence 9966655555442 688888885 3333333 23345678999999876666554 5679999998643 3333322
Q ss_pred --cCCCeEEEEEcCCCCeEEEEEec
Q 011924 431 --FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 431 --~~~~i~~l~fspdg~~l~~~~~D 453 (475)
......++++. +..|+.+-+.
T Consensus 205 ~~~~~~P~giav~--~~~ly~~d~~ 227 (316)
T 1ijq_A 205 EKRLAHPFSLAVF--EDKVFWTDII 227 (316)
T ss_dssp TTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCccCCcEEEEEE--CCEEEEEECC
Confidence 23457788885 3466665543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00072 Score=61.27 Aligned_cols=198 Identities=7% Similarity=0.042 Sum_probs=118.8
Q ss_pred eEEEEEE--cCc-EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.++.|++ +++ ++++...++.|...++. ..... ..........-.|++ .+++.+ +++.-.++.+.++++...
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~--~i~l~g~~D~EGIa~--~~~g~~-~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR--TIPLDFVKDLETIEY--IGDNQF-VISDERDYAIYVISLTPN 101 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE--EEECSSCSSEEEEEE--CSTTEE-EEEETTTTEEEEEEECTT
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE--EEecCCCCChHHeEE--eCCCEE-EEEECCCCcEEEEEcCCC
Confidence 5888888 344 55557778889888887 44332 222222345677888 777753 566556788999987654
Q ss_pred eee---eeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC---CCceEE
Q 011924 268 QLS---KHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIA 341 (475)
Q Consensus 268 ~~~---~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~~~ 341 (475)
..+ .....+.... .. ...+..++|+|.++.|.++.......||... .+..+.
T Consensus 102 ~~i~~~~~~~~~~~~~-~~---------------------N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 102 SEVKILKKIKIPLQES-PT---------------------NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp CCEEEEEEEECCCSSC-CC---------------------SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred Ceeeeeeeeccccccc-cc---------------------cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 321 2221110000 00 0012289999988777776655444444443 122223
Q ss_pred Eee-------cCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEEecCC---------CceEEEEEccCCCE
Q 011924 342 SLC-------GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------GAIRSIRYTSDGRY 404 (475)
Q Consensus 342 ~l~-------~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~---------~~v~~l~~spdg~~ 404 (475)
.+. .+...+.+++++| .+++++.+...+.+.++|.. ++.+..+.-.. ...-.|+|.|+|+.
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred eecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 221 1334578999999 56666677778899999985 45555554332 25679999999986
Q ss_pred EEEEcCCCeEEEEEC
Q 011924 405 MATAEPADFVHVYDV 419 (475)
Q Consensus 405 la~~~~dg~i~iwd~ 419 (475)
.+++ .-+.+++|.-
T Consensus 238 yIvs-E~n~~y~f~~ 251 (255)
T 3qqz_A 238 YIVS-EPNRFYRFTP 251 (255)
T ss_dssp EEEE-TTTEEEEEEC
T ss_pred EEEc-CCceEEEEEe
Confidence 6654 4457777764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.30 E-value=0.002 Score=62.83 Aligned_cols=214 Identities=9% Similarity=-0.065 Sum_probs=129.6
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe----eeeeee-c
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ----LSKHFR-F 275 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~----~~~~~~-~ 275 (475)
+|+.. ....|+..++....... +. .....+.+|+| ++.+..++++-...+.|+.+++.... ....+. .
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~---~~-~~~~~~~~l~~--d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS---LI-PNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE---EE-CSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEe-ccceeEEEccCCcceeE---ec-cccCcceEEee--eeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 44444 34678888887654432 22 23345677888 77666667776677889988886522 111111 2
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
..... .+++.+ .+++.++-...+.|.+.++........+.........++
T Consensus 158 ~~~p~-----------------------------glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~ia 208 (400)
T 3p5b_L 158 IQAPD-----------------------------GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 208 (400)
T ss_dssp CSCEE-----------------------------EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEE
T ss_pred CCCcc-----------------------------cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEE
Confidence 22334 788988 455555555678899999875544444444455688999
Q ss_pred EecCCCEEEEEeC--CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEEEec-
Q 011924 355 WHPNGVTFATGNQ--DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID- 430 (475)
Q Consensus 355 ~sp~g~~l~t~s~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~- 430 (475)
++|.+.+|+.... .+.|...++.. ......+.........|+++|++..|+.+. ..+.|..+|+...........
T Consensus 209 vdp~~g~ly~td~~~~~~I~~~~~dG-~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 209 VDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp EETTTTEEEEEECSSSCCEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred EecccCeEEEEeCCCCCEEEEEeCCC-CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence 9996666655543 36788888853 232333333345678999999877776664 467899999865433322222
Q ss_pred -cCCCeEEEEEcCCCCeEEEEEec
Q 011924 431 -FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 431 -~~~~i~~l~fspdg~~l~~~~~D 453 (475)
......++++ ++..|+.+-+.
T Consensus 288 ~~l~~P~gl~v--~~~~lywtd~~ 309 (400)
T 3p5b_L 288 KRLAHPFSLAV--FEDKVFWTDII 309 (400)
T ss_dssp STTSSEEEEEE--ETTEEEEEESS
T ss_pred CCCCCCEEEEE--eCCEEEEecCC
Confidence 2345667777 34456655443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0029 Score=67.11 Aligned_cols=207 Identities=9% Similarity=-0.022 Sum_probs=123.3
Q ss_pred eEEEEEE---cCcEEEEEecCceEEEEeCCCCCc-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 191 ~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
.+.+|++ .+.++++-...+.|+.+++..... .....+..........|++ .+.+..++++-...+.|.+.++..
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv--D~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee--eecCCcEEEEecCCCeEEEEeCCC
Confidence 3556777 345556666778898888875321 0001222223344567888 777766778877888999999975
Q ss_pred Ceeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-C-CCcEEEEECCCCceEEEe
Q 011924 267 YQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-D-NPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 267 ~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~-dg~i~iwd~~~~~~~~~l 343 (475)
......+. ...... .|+++|.+..|..+. . .+.|...++........+
T Consensus 503 ~~~~~l~~~~l~~P~-----------------------------gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 503 VKRKTLFRENGSKPR-----------------------------AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp SSEEEEEECTTCCEE-----------------------------EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CeEEEEEeCCCCCcc-----------------------------eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 44322222 223345 889999755555553 2 367888887644333333
Q ss_pred ecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 344 CGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
.........|+++|.+..|+.+. ....|...++.. ......+.. ......+|++.. ++++++-...+.|...|..
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence 43446789999998666666554 467899999854 333333332 122344666643 3344444556889999987
Q ss_pred CCeeEEEEec
Q 011924 421 SGYEKEQEID 430 (475)
Q Consensus 421 ~~~~~~~~~~ 430 (475)
+|..+..+..
T Consensus 632 tG~~~~~l~~ 641 (791)
T 3m0c_C 632 TGSDVNLLAE 641 (791)
T ss_dssp TCCCCEEEEC
T ss_pred CCcceEEeec
Confidence 8866655543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0025 Score=67.97 Aligned_cols=223 Identities=14% Similarity=0.075 Sum_probs=138.0
Q ss_pred ccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEee------ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeE
Q 011924 187 FTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRT------TYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (475)
Q Consensus 187 ~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~------~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v 259 (475)
+....|.++.. ....|-.|+.++-|..++............ ..-....|.++.. .++|. +..|+.++.|
T Consensus 310 l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~--lWigt~~~Gl 385 (781)
T 3v9f_A 310 LSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGK--LWIGTDGGGI 385 (781)
T ss_dssp BSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSC--EEEEEBSSCE
T ss_pred CCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCC--EEEEeCCCcE
Confidence 34457889988 445677788788888888765443211100 0112345777777 77775 5566666779
Q ss_pred EEEECCCCeeeeeee----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 260 RDFDMGKYQLSKHFR----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 260 ~iwd~~~~~~~~~~~----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
..|+..+++...... ....|. ++...++|.+.+ |+..+-+..++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~v~-----------------------------~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 386 NVFENGKRVAIYNKENRELLSNSVL-----------------------------CSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp EEEETTEEEEECC-----CCCSBEE-----------------------------EEEECTTSCEEE-EETTEEEEEECSS
T ss_pred EEEECCCCeEEEccCCCCCCCcceE-----------------------------EEEECCCCCEEE-EeccCCEEEEcCC
Confidence 999986654322110 112344 788888887555 6665678999987
Q ss_pred CCceEEEee---cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecC-----CCceEEEEEccCCCEEEE
Q 011924 336 TGKTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN-----LGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 336 ~~~~~~~l~---~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~-----~~~v~~l~~spdg~~la~ 407 (475)
+++.. .+. .....|.++...++|++.+ |+. +-|..||..+ ++........ ...|.++...++|++.+.
T Consensus 436 ~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 436 LKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 77543 332 1346789998888876544 445 4588899865 3332222211 357899999999986655
Q ss_pred EcCCCeEEEEECCCCeeEEEEec----cCCCeEEEEEcCCCCeEEE
Q 011924 408 AEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLFI 449 (475)
Q Consensus 408 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~fspdg~~l~~ 449 (475)
....| |..||..++.. ..+.. ....|.++...++|...++
T Consensus 512 t~~~G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp ESSSC-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred EcCCC-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 44355 88899776543 23321 1346889999888875543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0013 Score=70.25 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=150.9
Q ss_pred ecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCC
Q 011924 139 ATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLD 217 (475)
Q Consensus 139 ~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~ 217 (475)
......|++.....+..++..+++........+ . ........|.++.. ....|..|+..+.|.+++..
T Consensus 218 ~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~-------~----~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 218 KDTNGNIWIGTSKGLALFNANTETFTNFHNNPG-------N----IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQ 286 (781)
T ss_dssp ECTTCCEEEEETTEEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETT
T ss_pred EcCCCCEEEEeCCcHheECCCCCcEEEEEcCCC-------c----cccccCceEEEEEECCCCCEEEEeCCCCeEEECCC
Confidence 334445555554577777765543322110000 0 01123346888888 55667778775678888876
Q ss_pred CCCceEEEe-------ee----cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----------cc
Q 011924 218 RPGVSFCSR-------TT----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----------FP 276 (475)
Q Consensus 218 ~~~~~~~~~-------~~----~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~----------~~ 276 (475)
......... .. .-....|.++.. .++|. +-.|+.++.|..++..+........ ..
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSN 362 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEE--CSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCC
Confidence 544221111 00 112345777766 77775 5666677889999886543322110 11
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe---ecCCCCeEEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFAS 353 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l---~~h~~~v~~~ 353 (475)
..|. ++...++|.+. +|+.++-|..++..+++..... ......|.++
T Consensus 363 ~~v~-----------------------------~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 363 KVVS-----------------------------SVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp SCEE-----------------------------EEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred cceE-----------------------------EEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 2344 88888887755 5565566899997654322111 1234678999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec
Q 011924 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 430 (475)
Q Consensus 354 ~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 430 (475)
...++|++.+ |+.++-+..+|..+ ++ ...+.. ....|.++...++|++.+. +. +-|..||..++........
T Consensus 413 ~~d~~g~lWi-gt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 413 LKDSEGNLWF-GTYLGNISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp EECTTSCEEE-EETTEEEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECT
T ss_pred EECCCCCEEE-EeccCCEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccC
Confidence 8888877554 66666788898864 33 333321 3457899999888875554 44 4599999877644332221
Q ss_pred c-----CCCeEEEEEcCCCCeEEEEEe
Q 011924 431 F-----FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 431 ~-----~~~i~~l~fspdg~~l~~~~~ 452 (475)
. ...|.++...++|... +|+.
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lW-igt~ 513 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFW-IGTF 513 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEE-EEES
T ss_pred cccccccceeEEEEEcCCCCEE-EEEc
Confidence 1 3578999999988654 4444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0014 Score=61.80 Aligned_cols=207 Identities=8% Similarity=-0.039 Sum_probs=124.4
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee-eee-ccccEEeccCC
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK-HFR-FPWPVNVSSSY 285 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~-~~~-~~~~v~~s~~~ 285 (475)
...|+..+++.......... .. .....+++| .+.+..++.+-...+.|..+++....... .+. ......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~-~~-~~~~~~ld~--d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~----- 82 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV-GG-LEDAAAVDF--VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD----- 82 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE-EE-EEEEEEEEE--EGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-----
T ss_pred cCeEEEEECCCCceEEEEEe-cC-CCccEEEEE--EeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-----
Confidence 46788888876542211111 11 123456667 77666667777778889999987653211 111 112223
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
.+++.+ .++++++-...+.|.++++........+.........++++|.+..|+.
T Consensus 83 ------------------------glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 83 ------------------------GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp ------------------------EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred ------------------------EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 788887 4555555556778999998644333333344567889999996666665
Q ss_pred EeC--CCeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 365 GNQ--DKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 365 ~s~--dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
+.. .+.|...++.. .....+ .........++++|++..|+.+ +..+.|..+|+.................++++
T Consensus 139 td~~~~~~I~r~~~dG--~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav 216 (318)
T 3sov_A 139 TDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL 216 (318)
T ss_dssp EECSSSCEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE
T ss_pred EecCCCCEEEEEEcCC--CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 553 57888888853 323333 3334466899999977666655 45688999998643322222223456778887
Q ss_pred cCCCCeEEEEE
Q 011924 441 SPDTESLFIGV 451 (475)
Q Consensus 441 spdg~~l~~~~ 451 (475)
.. ..|+.+-
T Consensus 217 ~~--~~lywtd 225 (318)
T 3sov_A 217 FE--DILYWTD 225 (318)
T ss_dssp ET--TEEEEEE
T ss_pred eC--CEEEEEe
Confidence 53 3555553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00059 Score=67.35 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=127.7
Q ss_pred EEEEEc----CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC---Ce-EEEEEC
Q 011924 193 STLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND---CG-VRDFDM 264 (475)
Q Consensus 193 ~~l~~~----~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d---g~-v~iwd~ 264 (475)
..|+++ +..|+.+...+.|+.+++...... .. .........|++ +++|+ ++++.... .. +...+.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~---~~-~~~~~~P~giav--d~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD---IK-TTNIGQCADVNF--TLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE---EE-CCCCSCEEEEEE--CTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE---Ee-ecCCCCccEEEE--CCCCC-EEEEcCCCCcccceEEEEEC
Confidence 466774 345555544488988887644332 22 223345678888 99998 56665322 11 222222
Q ss_pred CCCee-eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEE
Q 011924 265 GKYQL-SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 265 ~~~~~-~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~ 342 (475)
..+.. ...+....... .++++| +|.+.++-..++.|+.++..++.....
T Consensus 215 ~~~~~~~~~~~~~~~P~-----------------------------giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~ 265 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAK-----------------------------TCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE 265 (433)
T ss_dssp GGTTCCEEEEEECSSBC-----------------------------CCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE
T ss_pred CCCeeccccccccCCCC-----------------------------EEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE
Confidence 11100 01111111112 778999 777666666778899999887776333
Q ss_pred e-e-cCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC-Cc--eEEEEecC---------------CCceEEEEE---
Q 011924 343 L-C-GHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNL-SE--SVAVLKGN---------------LGAIRSIRY--- 398 (475)
Q Consensus 343 l-~-~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~-~~--~~~~~~~~---------------~~~v~~l~~--- 398 (475)
+ . +.......++|+|++++|+.+ ...+.|+.++.... +. ....+.+. -.....+++
T Consensus 266 ~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n 345 (433)
T 4hw6_A 266 EVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKN 345 (433)
T ss_dssp EEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEEC
T ss_pred EeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcc
Confidence 3 2 122334579999999955555 45678999886421 11 11222221 123567999
Q ss_pred ------ccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc------------------CCCeEEEEEcCCCCeEEEEEe
Q 011924 399 ------TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF------------------FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 399 ------spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~l~fspdg~~l~~~~~ 452 (475)
.++|++.++-...+.|+.++. +|.. ..+.+. .....+|+++|....|+++-.
T Consensus 346 ~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 346 EAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp GGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred ccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 778877777777889999984 6643 333321 234789999954445555543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00066 Score=63.97 Aligned_cols=190 Identities=13% Similarity=0.196 Sum_probs=122.3
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC----CCcE--EEE
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP----DGKL--LII 322 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp----~g~~--l~~ 322 (475)
+++.....+.+.+||+ .++.+..+.. ..++ .+.+-| .|+. ++.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~n-----------------------------nVD~r~~~~l~g~~~dla~ 90 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLN-----------------------------NVDIRYDFPLNGKKVDIAA 90 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEE-----------------------------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcc-----------------------------cEEEecccccCCceEeEEE
Confidence 4666668889999999 7888777754 4455 555444 2322 333
Q ss_pred E-e-C--CCcEEEEECC--CCceEEEeec------CC-CCeEEEEE--ecC-CC-EEEEEeCCCeEEEEECCC------C
Q 011924 323 V-G-D--NPDGLLVDSM--TGKTIASLCG------HL-DFSFASAW--HPN-GV-TFATGNQDKTCRIWDLRN------L 379 (475)
Q Consensus 323 ~-~-~--dg~i~iwd~~--~~~~~~~l~~------h~-~~v~~~~~--sp~-g~-~l~t~s~dg~v~iwd~~~------~ 379 (475)
+ . . +..|.+|++. ++ .+..+.. .. ..+..+|+ +|. +. ++++...+|.+..|++.. .
T Consensus 91 as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 91 ASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEECSTTCCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EeCCCCCCCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 3 3 3 5789999763 44 3555521 11 45667777 774 44 677788889999998842 1
Q ss_pred CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC-----CCeeEEEEe-c-cCCCeEEEEE--cCCCC-eEEE
Q 011924 380 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK-----SGYEKEQEI-D-FFGEISGISF--SPDTE-SLFI 449 (475)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~-----~~~~~~~~~-~-~~~~i~~l~f--spdg~-~l~~ 449 (475)
.+.++.+... +.+-.++..+....|+.+..+.-|..|+.. ++..+..+. + ....+.+|++ .++|+ +|++
T Consensus 170 ~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 170 GKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp EEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred ceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 2456777654 478899999988899999988778888854 233443321 1 2247888888 56666 7887
Q ss_pred EEecCCcceEEEEEeecceeeecc
Q 011924 450 GVWDRTYGSLLEYGRCRNYSYLDS 473 (475)
Q Consensus 450 ~~~D~~~~~ll~~~~~~~~~~l~~ 473 (475)
++... ..+.-|.+...+.|+-+
T Consensus 249 SsQG~--~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 249 SSQGN--SSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EEGGG--TEEEEEESSTTCCEEEE
T ss_pred EcCCC--CEEEEEECCCCCcEEEE
Confidence 77433 34566666555666654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00054 Score=64.14 Aligned_cols=180 Identities=11% Similarity=0.057 Sum_probs=108.7
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
....++| +++|+ ++++....+.|..||... +....+....... ++++
T Consensus 33 ~pegia~--~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~-----------------------------gia~ 79 (306)
T 2p4o_A 33 FLENLAS--APDGT-IFVTNHEVGEIVSITPDG-NQQIHATVEGKVS-----------------------------GLAF 79 (306)
T ss_dssp CEEEEEE--CTTSC-EEEEETTTTEEEEECTTC-CEEEEEECSSEEE-----------------------------EEEE
T ss_pred CcceEEE--CCCCC-EEEEeCCCCeEEEECCCC-ceEEEEeCCCCce-----------------------------eEEE
Confidence 3466778 88887 467766788999998765 3333444444555 8999
Q ss_pred CCCCcEEEEEeCC--CcEEEEECCCCceEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-eEEEEe--
Q 011924 314 SPDGKLLIIVGDN--PDGLLVDSMTGKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLK-- 387 (475)
Q Consensus 314 sp~g~~l~~~~~d--g~i~iwd~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~-- 387 (475)
+++|+++++.... ..|..++..+++....... .......++..+++..+++-...+.|.++|... +. .+....
T Consensus 80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~ 158 (306)
T 2p4o_A 80 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPM 158 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGG
T ss_pred cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCc
Confidence 9999976655433 2477778777775433221 222344555556555555555688899999754 21 121111
Q ss_pred -------cCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCC-Cee--EEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 388 -------GNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKS-GYE--KEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 388 -------~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
........+ +|+|++|+.+ ...+.|..|++.. +.. ...+. ......+++++++|++ +++.
T Consensus 159 ~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l-~va~ 229 (306)
T 2p4o_A 159 LARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNL-YGAT 229 (306)
T ss_dssp GSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCE-EEEC
T ss_pred cccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCE-EEEe
Confidence 111234455 8888766555 4568999999874 321 11111 1245678999999965 4443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00035 Score=74.20 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=103.2
Q ss_pred EEE-EcCcEEEEEec-C----ceEEEEeCCCC-CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC----CeEEEE
Q 011924 194 TLA-VKDKLLVAGGF-Q----GELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDF 262 (475)
Q Consensus 194 ~l~-~~~~~lvsg~~-d----g~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d----g~v~iw 262 (475)
+++ .+|++|+.+.. . .+|+++++... .... ... ......+.| +|+|+.++++.... ..|.++
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVW--GPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEE--CSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEE--ecCCCEEEEEEECCCCCCCEEEEE
Confidence 455 57887775543 2 35999999876 4210 000 011345677 99998856655322 257777
Q ss_pred ECCCCeee--eeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe---CCCcEEEEECC
Q 011924 263 DMGKYQLS--KHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG---DNPDGLLVDSM 335 (475)
Q Consensus 263 d~~~~~~~--~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~dg~i~iwd~~ 335 (475)
++.+++.. ..+. ...... .+.|||||++|+..+ ....|+++|+.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~-----------------------------~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSA-----------------------------FMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEE-----------------------------EEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred ECCCCchhcEEEEecCCCceEE-----------------------------EEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 88665321 2222 112233 778999999988765 34468889988
Q ss_pred CCc-eE--EEee-cCCCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCCceEEE-EecCCC--ceEEEEEccCCCE
Q 011924 336 TGK-TI--ASLC-GHLDFSFASAWHPNGVTFATGNQD----KTCRIWDLRNLSESVAV-LKGNLG--AIRSIRYTSDGRY 404 (475)
Q Consensus 336 ~~~-~~--~~l~-~h~~~v~~~~~sp~g~~l~t~s~d----g~v~iwd~~~~~~~~~~-~~~~~~--~v~~l~~spdg~~ 404 (475)
++. .. ..+. ......+++.|+..+.+++....+ ..|..+|+.+. ..... +..+.. .+..+.+ .+..
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~--~~~~ 380 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAV--RSNY 380 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEE--CSSE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEE--ECCE
Confidence 752 22 3343 344556667666554455555444 25677777532 12222 222332 3444444 4554
Q ss_pred E-EEEcCCCe--EEEEEC
Q 011924 405 M-ATAEPADF--VHVYDV 419 (475)
Q Consensus 405 l-a~~~~dg~--i~iwd~ 419 (475)
| ++...++. |.++++
T Consensus 381 lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEEETTEEEEEEEEC
T ss_pred EEEEEEeCCEEEEEEEec
Confidence 4 45555664 666775
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00029 Score=69.56 Aligned_cols=142 Identities=16% Similarity=0.101 Sum_probs=93.3
Q ss_pred eEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceE
Q 011924 310 HSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESV 383 (475)
Q Consensus 310 ~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~ 383 (475)
.++++| ++..|.++...+.|+.+|+..++.. .+.........++|+++|++|+.+... ..+.+.+........
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~ 219 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVI 219 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeee
Confidence 788998 4556666655578999998766544 343355678899999999966666542 134444432211111
Q ss_pred EEEecCCCceEEEEEcc-CCCEEEEEcCCCeEEEEECCCCeeEEEEec-cCCCeEEEEEcCCCCeEEEEEec
Q 011924 384 AVLKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~fspdg~~l~~~~~D 453 (475)
..+.. ......++++| +|.++++-..++.|..++..++........ ......+++|+|+|++|+++...
T Consensus 220 ~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 220 TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 33332 23456889999 777777777788999999887654222221 22457899999999988777543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00052 Score=70.50 Aligned_cols=198 Identities=11% Similarity=0.013 Sum_probs=121.6
Q ss_pred cCcEEEEEec-CceEEEEeC-CCCCceEEEeeecCCC--------CceeEEEEEeCCCCCe---EEEEEeCCCeEEEEEC
Q 011924 198 KDKLLVAGGF-QGELICKHL-DRPGVSFCSRTTYDDN--------AITNAVEIYGSPSGAV---HFTASNNDCGVRDFDM 264 (475)
Q Consensus 198 ~~~~lvsg~~-dg~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~l~~~~s~~g~~---~l~s~s~dg~v~iwd~ 264 (475)
.+..|++++. ++.|..+|. .+.+............ .....+.+ +|.+.. +++.++.|+.|..+|.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av--~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAY--WPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEE--ECCCSSSCCEEEEECTTSEEEEEET
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEE--EecCCcceeEEEEEcCCCEEEEEEC
Confidence 3556666666 889999998 7776655433221100 00122333 332221 2566678999999999
Q ss_pred CCCeeeeeeeccc-----cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe------CCCcEEEEE
Q 011924 265 GKYQLSKHFRFPW-----PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG------DNPDGLLVD 333 (475)
Q Consensus 265 ~~~~~~~~~~~~~-----~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~------~dg~i~iwd 333 (475)
.+++.+....... .+.. ...+. ++ .+++++ .++.|+-+|
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~s----------------------------sP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTI----------------------------APYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCS----------------------------CCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred CCCCEEEeecCCCCCccceeec----------------------------CCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 9999887765322 1110 11111 34 455544 378999999
Q ss_pred CCCCceEEEeecCCCC-------------------------------------e-EEEEEecCCCEEEEEeCC-------
Q 011924 334 SMTGKTIASLCGHLDF-------------------------------------S-FASAWHPNGVTFATGNQD------- 368 (475)
Q Consensus 334 ~~~~~~~~~l~~h~~~-------------------------------------v-~~~~~sp~g~~l~t~s~d------- 368 (475)
..+|+.+.++...... + ..+++.|...+++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999998877632211 0 134566777778877655
Q ss_pred ---------CeEEEEECCCCCceEEEEecCC----------CceEEEEEc-cCC---CEEEEEcCCCeEEEEECCCCeeE
Q 011924 369 ---------KTCRIWDLRNLSESVAVLKGNL----------GAIRSIRYT-SDG---RYMATAEPADFVHVYDVKSGYEK 425 (475)
Q Consensus 369 ---------g~v~iwd~~~~~~~~~~~~~~~----------~~v~~l~~s-pdg---~~la~~~~dg~i~iwd~~~~~~~ 425 (475)
+.|.-+|.++ ++.+-.++... .++ -+... .+| +.++.++.+|.++++|..+|+.+
T Consensus 269 ~r~gd~~y~~sv~Ald~~T-G~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADT-GEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GSCSCCTTSSEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCCCccccceEEEEeCCC-CceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 3799999987 66555544321 112 12222 578 56778899999999999999887
Q ss_pred EEEe
Q 011924 426 EQEI 429 (475)
Q Consensus 426 ~~~~ 429 (475)
....
T Consensus 347 w~~~ 350 (599)
T 1w6s_A 347 SANK 350 (599)
T ss_dssp EEEE
T ss_pred eccc
Confidence 6554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0048 Score=65.40 Aligned_cols=214 Identities=9% Similarity=-0.076 Sum_probs=126.0
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe----eeeeee-c
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ----LSKHFR-F 275 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~----~~~~~~-~ 275 (475)
+|+.. ....|+..++...... .+.. ....+.+|++ .+.+..++++-...+.|+.+++.... ....+. .
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~---~l~~-~~~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~ 469 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT---SLIP-NLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 469 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE---EEEC-SCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred ccccc-cccceeEeeccCCcce---eeec-CCCceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC
Confidence 44443 3456777777654433 2222 2344567777 77666667777777889888886531 111111 1
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE-EEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI-IVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 354 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~-~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~ 354 (475)
..... .|++.+.++.|. +-...+.|.+.++........+.........|+
T Consensus 470 l~~P~-----------------------------GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIa 520 (791)
T 3m0c_C 470 IQAPD-----------------------------GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520 (791)
T ss_dssp CSCCC-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEE
T ss_pred CCCcc-----------------------------eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEE
Confidence 12223 788988665554 445678899999874443333344456689999
Q ss_pred EecCCCEEEEEeC--CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEEEec-
Q 011924 355 WHPNGVTFATGNQ--DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID- 430 (475)
Q Consensus 355 ~sp~g~~l~t~s~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~- 430 (475)
++|...+|+.+.. .+.|.+.++.. ......+.........|++++.+..|+.+. ..+.|..+++........+..
T Consensus 521 VDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~ 599 (791)
T 3m0c_C 521 VDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 599 (791)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred EecCCCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC
Confidence 9997555655543 26788888853 333333333445788999998777666664 457899999865433333322
Q ss_pred -cCCCeEEEEEcCCCCeEEEEEec
Q 011924 431 -FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 431 -~~~~i~~l~fspdg~~l~~~~~D 453 (475)
......+|++. +.+|+.+-+.
T Consensus 600 ~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 600 KRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp TTTSSEEEEEEE--TTEEEEEETT
T ss_pred CccCCCCEEEEe--CCEEEEEECC
Confidence 12345566663 4467666443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.017 Score=59.66 Aligned_cols=230 Identities=7% Similarity=-0.020 Sum_probs=137.2
Q ss_pred eEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEecCceEEEEeCCCCC
Q 011924 144 DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG 220 (475)
Q Consensus 144 ~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~dg~i~vw~~~~~~ 220 (475)
.|+++....|...+..+.....++.+.+ + .....|++ ++.++++-..++.|..++++...
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~---------------~--~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~ 70 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTG---------------V--KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA 70 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCS---------------C--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCC---------------C--CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC
Confidence 3555566667766665443333222211 1 13567777 34555566678999988887544
Q ss_pred ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee-eccccEEeccCCceEEEEEEeecccc
Q 011924 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFPWPVNVSSSYCIILLCRLLNFMTE 299 (475)
Q Consensus 221 ~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~ 299 (475)
.. .+..........|++ .+.+..++++-...+.|.+.++........+ .......
T Consensus 71 ~~---~v~~~g~~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~------------------- 126 (628)
T 4a0p_A 71 LE---HVVEFGLDYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPR------------------- 126 (628)
T ss_dssp CE---EEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEE-------------------
T ss_pred cE---EEEeCCCCCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcc-------------------
Confidence 33 222222234567777 6666666777777789999998654322212 1222234
Q ss_pred eEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEC
Q 011924 300 KVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDL 376 (475)
Q Consensus 300 ~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~ 376 (475)
.+++.|....|..+. ..+.|...++.... ...+-........+++++++..|+.+. ..+.|...|+
T Consensus 127 ----------~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 127 ----------ALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp ----------EEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ----------cEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 889998554555443 35678888875333 333333456788999999766666654 4678999998
Q ss_pred CCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEE
Q 011924 377 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 428 (475)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~ 428 (475)
..... ..+.........+++.. +++.++-...+.|...|..+|.....+
T Consensus 196 dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 196 LGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 64222 33444344556888765 444455555789999997777544443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0048 Score=61.37 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=86.1
Q ss_pred eEEECC-CCcEEEEEeCCCcEEEEECC-------CCce-----------EEE-ee-cCCCCeEEEEEecCCCEEEEE-eC
Q 011924 310 HSSQSP-DGKLLIIVGDNPDGLLVDSM-------TGKT-----------IAS-LC-GHLDFSFASAWHPNGVTFATG-NQ 367 (475)
Q Consensus 310 ~~~~sp-~g~~l~~~~~dg~i~iwd~~-------~~~~-----------~~~-l~-~h~~~v~~~~~sp~g~~l~t~-s~ 367 (475)
.++++| ++.++++-..++.|+.+|+. ++.. ... +. +.....+.++|+|+|++|+.+ +.
T Consensus 251 giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~ 330 (496)
T 3kya_A 251 GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN 330 (496)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC
Confidence 778999 55656666678889999987 5543 112 21 233456899999999965554 45
Q ss_pred CCeEEEEECCCCCceE---EEEecC---C------------CceE-EEEEc-------cCCCEEEEEcCCCeEEEEECCC
Q 011924 368 DKTCRIWDLRNLSESV---AVLKGN---L------------GAIR-SIRYT-------SDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~---~~~~~~---~------------~~v~-~l~~s-------pdg~~la~~~~dg~i~iwd~~~ 421 (475)
.+.|+.++.......+ ..+.+. . .... .++.. ++|.++++=..++.|+.++ .+
T Consensus 331 ~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~ 409 (496)
T 3kya_A 331 NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PE 409 (496)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CC
Confidence 7789887653212111 222221 0 1234 44554 5677777767788999999 56
Q ss_pred CeeEEEEecc------------------------CCCeEEEEEcCCCCeEEEEEe
Q 011924 422 GYEKEQEIDF------------------------FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 422 ~~~~~~~~~~------------------------~~~i~~l~fspdg~~l~~~~~ 452 (475)
|. +.++.+. .....+|++++++..|+++-.
T Consensus 410 G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~ 463 (496)
T 3kya_A 410 GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ 463 (496)
T ss_dssp CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET
T ss_pred CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC
Confidence 64 3344321 124779999997445555543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.012 Score=60.78 Aligned_cols=213 Identities=10% Similarity=0.001 Sum_probs=132.6
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-ccE
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-WPV 279 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v 279 (475)
+|+.+ ..+.|+..+++...... ......-....+|+| ++.+..++++-...+.|..+++........+... ...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~--~~~~~~~~~~~~l~~--d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV--AIPLTGVKEASALDF--DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE--ECCCCSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce--EEEcCCCCceEEEEE--ECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 44444 56788888987654331 121122234567777 8877776777778899999998654332222211 223
Q ss_pred EeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecC
Q 011924 280 NVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN 358 (475)
Q Consensus 280 ~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~ 358 (475)
. .+++.+.+..| ++-...+.|.+.++........+.........++++|.
T Consensus 83 ~-----------------------------GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~ 133 (628)
T 4a0p_A 83 E-----------------------------GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA 133 (628)
T ss_dssp C-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT
T ss_pred c-----------------------------eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC
Confidence 3 78888755544 44455678999998644333233344566899999995
Q ss_pred CCEEEEEeC--CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeEEEEeccCCCe
Q 011924 359 GVTFATGNQ--DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEI 435 (475)
Q Consensus 359 g~~l~t~s~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i 435 (475)
...|+.... .+.|...++.. .....+.........++++++++.|+.+. ..+.|..+|+..... ..+.......
T Consensus 134 ~G~lY~tD~g~~~~I~r~~~dG--~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P 210 (628)
T 4a0p_A 134 EGFMYWTEWGGKPKIDRAAMDG--SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHP 210 (628)
T ss_dssp TTEEEEEECSSSCEEEEEETTS--CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCE
T ss_pred CCeEEEeCCCCCCEEEEEeCCC--CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCc
Confidence 555555543 46788788753 33333333455678999999877666664 467899999865433 3333444566
Q ss_pred EEEEEcCCCCeEEEEEe
Q 011924 436 SGISFSPDTESLFIGVW 452 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~ 452 (475)
.++++.. ..|+.+-+
T Consensus 211 ~glav~~--~~ly~tD~ 225 (628)
T 4a0p_A 211 FGLTQYQ--DYIYWTDW 225 (628)
T ss_dssp EEEEEET--TEEEEEET
T ss_pred eEEEEEC--CEEEEecC
Confidence 7888765 46666654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00099 Score=65.74 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=91.6
Q ss_pred eeEEEEEeCCC--CCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEE
Q 011924 235 TNAVEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 235 v~~l~~~~s~~--g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
...|++ +|+ +..++++-.. +.|+.++..+++............ .++
T Consensus 141 P~gvav--d~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~-----------------------------gia 188 (433)
T 4hw6_A 141 IWRMMF--DPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCA-----------------------------DVN 188 (433)
T ss_dssp CCEEEE--CTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEE-----------------------------EEE
T ss_pred CceEEE--ccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCcc-----------------------------EEE
Confidence 457788 874 3343554433 889999998777655444333455 899
Q ss_pred ECCCCcEEEEEeCC---C-cEEEEECCCCce-EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 313 QSPDGKLLIIVGDN---P-DGLLVDSMTGKT-IASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 313 ~sp~g~~l~~~~~d---g-~i~iwd~~~~~~-~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
++++|+++++.... . .+...+...+.. ...+. .......++++| +|++.++-..++.|+.+|... +.....+
T Consensus 189 vd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~ 266 (433)
T 4hw6_A 189 FTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEE 266 (433)
T ss_dssp ECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEE
T ss_pred ECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEE
Confidence 99999944443311 1 233333322211 11222 234456789999 777666666778999999864 4431222
Q ss_pred -ec-CCCceEEEEEccCCCEEEEE-cCCCeEEEEECC
Q 011924 387 -KG-NLGAIRSIRYTSDGRYMATA-EPADFVHVYDVK 420 (475)
Q Consensus 387 -~~-~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~ 420 (475)
.. .......++|+|+|++|+.+ ...+.|+.++..
T Consensus 267 ~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 267 VMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred eccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 21 12233479999999955554 456889998865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.008 Score=56.64 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=117.3
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEe--CCCCCe--EEEEEe-C--CCeEEEEECC--CCeee
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG--SPSGAV--HFTASN-N--DCGVRDFDMG--KYQLS 270 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~--s~~g~~--~l~s~s-~--dg~v~iwd~~--~~~~~ 270 (475)
.+++.....+.+.++|+. ++.. .... .+.++.+.+.. .-.|+. ++++.. . +++|++|++. ++. +
T Consensus 41 s~ii~t~k~~gL~Vydl~-G~~l---~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLD-GKML---HSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp CEEEEEETTTEEEEEETT-SCEE---EEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred cEEEEEcCCCCEEEEcCC-CcEE---EEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 455555677889999994 3333 2222 24567777621 112222 233333 3 5789999773 333 3
Q ss_pred eeeecc-ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE--CCC-Cc-EEEEEeCCCcEEEEECC-------CCc
Q 011924 271 KHFRFP-WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ--SPD-GK-LLIIVGDNPDGLLVDSM-------TGK 338 (475)
Q Consensus 271 ~~~~~~-~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~--sp~-g~-~l~~~~~dg~i~iwd~~-------~~~ 338 (475)
..+... .++.- ....+..+++ +|. ++ ++++...+|.+..|++. +++
T Consensus 114 ~~i~~~~~pv~t----------------------~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 114 QSMTDPDHPIAT----------------------AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp EECSCTTSCEEC----------------------CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred eeccccccCcCC----------------------CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 333211 01110 0001115666 774 54 57777788999998883 335
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----CceEEEEe-cC-CCceEEEEE--ccCCC-EEEEEc
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL----SESVAVLK-GN-LGAIRSIRY--TSDGR-YMATAE 409 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~----~~~~~~~~-~~-~~~v~~l~~--spdg~-~la~~~ 409 (475)
.++++.. .+.+..|...+....|+.+-++.-|..++.+-. .+.+..+. ++ ...+..|++ .++|+ +|++++
T Consensus 172 lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 172 KVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp EEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred EEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 6677764 457888999998889999999877666675421 23443332 11 135778877 56666 565555
Q ss_pred -CCCeEEEEECC-CCeeEEEEe
Q 011924 410 -PADFVHVYDVK-SGYEKEQEI 429 (475)
Q Consensus 410 -~dg~i~iwd~~-~~~~~~~~~ 429 (475)
.++.+.+||.. +.+.+..+.
T Consensus 251 QG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 251 QGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GGGTEEEEEESSTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCCcEEEEEE
Confidence 57899999986 555555543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0012 Score=67.74 Aligned_cols=190 Identities=15% Similarity=0.163 Sum_probs=108.9
Q ss_pred ceEEEEeCCCCCceEEEeeecCC----CCceeEEEEEeC-CCCC--eEEEEEeCCCeEEEEECCCCeeeeeeeccccEEe
Q 011924 209 GELICKHLDRPGVSFCSRTTYDD----NAITNAVEIYGS-PSGA--VHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNV 281 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~----~~~v~~l~~~~s-~~g~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~ 281 (475)
+.|..+|..+.+.....+...+. ......+.+... .+|+ .+++.++.+|.++++|..+++.+..+.....+++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 68999999888877654443211 011111112101 4664 3578889999999999999999877764321110
Q ss_pred ccCCceEEEEEEeecccceEEE------------------Eee--------eeeeEEECCCCcEEEEEe-----------
Q 011924 282 SSSYCIILLCRLLNFMTEKVII------------------CLL--------CLQHSSQSPDGKLLIIVG----------- 324 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~------------------~~~--------~i~~~~~sp~g~~l~~~~----------- 324 (475)
. .-.++.+++.+. ... .-..++++|+..++++..
T Consensus 371 ~---------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 441 (582)
T 1flg_A 371 A---------SHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEE 441 (582)
T ss_dssp E---------EEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECC
T ss_pred c---------ccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccc
Confidence 0 000111111100 000 001456666544444332
Q ss_pred ----------------------CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce
Q 011924 325 ----------------------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 382 (475)
Q Consensus 325 ----------------------~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~ 382 (475)
..|.|..||+.+|+.+.+..... ++..-.....+.+++.++.|+.++.||.++ ++.
T Consensus 442 ~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~ 519 (582)
T 1flg_A 442 VSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKE 519 (582)
T ss_dssp CCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTT-CCE
T ss_pred ccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCC-CCE
Confidence 25789999999999887776332 222222233567888899999999999987 777
Q ss_pred EEEEecCCCce-EEEEEccCCC-EEEEEc
Q 011924 383 VAVLKGNLGAI-RSIRYTSDGR-YMATAE 409 (475)
Q Consensus 383 ~~~~~~~~~~v-~~l~~spdg~-~la~~~ 409 (475)
+-.++...+.+ .-+.|..+|+ |+++.+
T Consensus 520 lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 77776544322 2366777886 555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0017 Score=60.57 Aligned_cols=154 Identities=8% Similarity=0.019 Sum_probs=106.0
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc---------cEEeccCCceEEEEEEeecccceEEEEe
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW---------PVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---------~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
-.++.| .+....++++.-..++|..|+...+..... ..+. .+.
T Consensus 15 PE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~s------------------------- 66 (334)
T 2p9w_A 15 PEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMS------------------------- 66 (334)
T ss_dssp CSCEEE--ETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEE-------------------------
T ss_pred CcCccC--cCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceee-------------------------
Confidence 345777 665555455555789999999975543332 2111 123
Q ss_pred eeeeeEEE---CCCCcEEEEEeC-------------CCcEEEEECC---CCceEEEee--cC-----------CCCeEEE
Q 011924 306 LCLQHSSQ---SPDGKLLIIVGD-------------NPDGLLVDSM---TGKTIASLC--GH-----------LDFSFAS 353 (475)
Q Consensus 306 ~~i~~~~~---sp~g~~l~~~~~-------------dg~i~iwd~~---~~~~~~~l~--~h-----------~~~v~~~ 353 (475)
.+.| .|+++++++... +..+..+|+. +++.+.... .. ......+
T Consensus 67 ----Gl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 67 ----GLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp ----EEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred ----EEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 8899 688888876442 5779999998 787765443 11 1247899
Q ss_pred EEecCCCEEEEEeCC-CeEEEEECCCCCceEEEEe--c----CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 354 AWHPNGVTFATGNQD-KTCRIWDLRNLSESVAVLK--G----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 354 ~~sp~g~~l~t~s~d-g~v~iwd~~~~~~~~~~~~--~----~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+..++|+.-++++.. +.|...+.. ++.+..+. . .....+.++++|+|+.|++....+.|..+|+.+.
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 999999999999888 877777764 33333321 1 1123669999999999998877999999998854
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.83 E-value=9e-05 Score=77.92 Aligned_cols=211 Identities=10% Similarity=-0.020 Sum_probs=117.2
Q ss_pred EEEEE--cCcEEE-EEecCceEEEEeCCCC----CceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 193 STLAV--KDKLLV-AGGFQGELICKHLDRP----GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 193 ~~l~~--~~~~lv-sg~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
..|+| .++.|+ +-...+.|..+++... ... .+..........|++ .+.+..++++-...+.|.++++.
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~---~~i~~~~~~P~glav--D~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC---CBCCSCC--CCCEEC--CCSSSBCEECCTTTSCEEEEBSS
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE---EEEeCCCCCcceEEE--EeeCCcEEEEeccCCeEEEEecC
Confidence 35555 344444 4445678888887641 111 111111122345666 65555556665667889999986
Q ss_pred CCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC--CCcEEEEECCCCceEEE
Q 011924 266 KYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD--NPDGLLVDSMTGKTIAS 342 (475)
Q Consensus 266 ~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~~~~~~ 342 (475)
.......+. ...... .++++|.+.+|+.+.. .+.|..+++. |.....
T Consensus 484 g~~~~~l~~~~~~~P~-----------------------------giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~ 533 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPR-----------------------------AIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS 533 (699)
T ss_dssp SCCEEEECCCSSCCCC-----------------------------CEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCE
T ss_pred CCceEEEEeCCCCCcc-----------------------------eEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeE
Confidence 543332222 112223 7889996655555432 3677777765 332222
Q ss_pred e-ecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 343 L-CGHLDFSFASAWHPNGVTFA-TGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 343 l-~~h~~~v~~~~~sp~g~~l~-t~s~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
+ .........|+|+|++..|+ +-+..+.|.++++.. ...+.+.. .......|++..+ +++++....+.|..+
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 2 22334567899999755554 445567899999853 22223321 1223345666544 455555567899999
Q ss_pred ECCCCeeEEEEeccCCCeEEEEEc
Q 011924 418 DVKSGYEKEQEIDFFGEISGISFS 441 (475)
Q Consensus 418 d~~~~~~~~~~~~~~~~i~~l~fs 441 (475)
+..+|..+..+......+.+|++.
T Consensus 611 d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 611 NRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp ETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EccCCCceEEeecCCCCCcEEEEe
Confidence 988887766654333344555443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0066 Score=57.98 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=117.0
Q ss_pred EEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEe--eecCCCCceeEEEEEeCCC---CCeEEEEEeCC-----CeEE
Q 011924 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR--TTYDDNAITNAVEIYGSPS---GAVHFTASNND-----CGVR 260 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~v~~l~~~~s~~---g~~~l~s~s~d-----g~v~ 260 (475)
..|++ +|+++++ ...|.|.+++ + ........ ...........|++ +|+ +..++++-+.. ..|.
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~--~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLAL--HPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEE--CTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEE--CCCCCCCCEEEEEEecCCCCCccEEE
Confidence 46777 6765554 5669999888 2 22111111 11122345677888 997 55545554432 5677
Q ss_pred EEECCCCeee------eeeec-cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-------
Q 011924 261 DFDMGKYQLS------KHFRF-PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------- 326 (475)
Q Consensus 261 iwd~~~~~~~------~~~~~-~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------- 326 (475)
.|+....+.. ..+.. ..... ....++|.|+|.+.++.+..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h--------------------------~~~~l~~~pdG~Lyv~~G~~~~~~~~~ 162 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLH--------------------------SGGRIAFGPDGMLYVTTGEVYERELAQ 162 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCC--------------------------CCCCEEECTTSCEEEECCCTTCGGGGG
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCc--------------------------CCceEEECCCCCEEEEECCCCCCcccc
Confidence 7776543211 00110 00000 00178999999877765432
Q ss_pred ------CcEEEEECCCC-------------ceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeE------EEEECCCCC
Q 011924 327 ------PDGLLVDSMTG-------------KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTC------RIWDLRNLS 380 (475)
Q Consensus 327 ------g~i~iwd~~~~-------------~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v------~iwd~~~~~ 380 (475)
+.|.-++.... .....-.++. ....++|+| ++.++++-.....+ .|.-+....
T Consensus 163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~ 241 (352)
T 2ism_A 163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG 241 (352)
T ss_dssp CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTC
T ss_pred CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC
Confidence 45555554320 1111112332 356789999 67766654433331 122222111
Q ss_pred -----------------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee------EEEEeccCCCeEE
Q 011924 381 -----------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE------KEQEIDFFGEISG 437 (475)
Q Consensus 381 -----------------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~------~~~~~~~~~~i~~ 437 (475)
.++..+.. ..+...++| .+|.++++.-..+.|...++..... ...+..-.+.+.+
T Consensus 242 nyGwp~~~g~~~~~~~~~p~~~~~~-~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~ 319 (352)
T 2ism_A 242 NYGWPRVVGRGNDPRYRDPLYFWPQ-GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLRE 319 (352)
T ss_dssp BCCTTTCCSCCCCTTSCCCSEECTT-CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEE
T ss_pred cCCCCcccCCCCCCCCcCCeEecCC-CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeE
Confidence 23334422 235667888 5677776666677888887754321 1222233478999
Q ss_pred EEEcCCCCeEEEE
Q 011924 438 ISFSPDTESLFIG 450 (475)
Q Consensus 438 l~fspdg~~l~~~ 450 (475)
+++.|||...++.
T Consensus 320 v~~~pdG~lyv~~ 332 (352)
T 2ism_A 320 VQVGPDGALYVTT 332 (352)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCcEEEEE
Confidence 9999999655554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0089 Score=56.87 Aligned_cols=190 Identities=12% Similarity=0.088 Sum_probs=105.9
Q ss_pred cCceEEEEeCCCCCceE-EEeeecC----CCCceeEEEEEeCCCCCeEEEEE-eC--CCeEEEEECCCC-ee---eeeee
Q 011924 207 FQGELICKHLDRPGVSF-CSRTTYD----DNAITNAVEIYGSPSGAVHFTAS-NN--DCGVRDFDMGKY-QL---SKHFR 274 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~-~~~~~~~----~~~~v~~l~~~~s~~g~~~l~s~-s~--dg~v~iwd~~~~-~~---~~~~~ 274 (475)
.+|.|.++++....... ....... ..-....+.+....+|...|+++ .. +.+|.+|++... .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987443221 1122211 12245566664443555334443 22 467888876542 22 22222
Q ss_pred c--cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-----------------CCCcEEEEECC
Q 011924 275 F--PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-----------------DNPDGLLVDSM 335 (475)
Q Consensus 275 ~--~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-----------------~dg~i~iwd~~ 335 (475)
. -...+ .+.+.++|.+.++.. ..|.++-++.
T Consensus 161 g~~~~~pN-----------------------------D~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 161 HKLLPSVN-----------------------------DIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp CTTCSSEE-----------------------------EEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred cCCCCCCc-----------------------------eEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 2 12233 788889998777653 1234444443
Q ss_pred CCceEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCce--EEEEecCCCceEEEEEcc-CCCEEEEEcCC
Q 011924 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSES--VAVLKGNLGAIRSIRYTS-DGRYMATAEPA 411 (475)
Q Consensus 336 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp-dg~~la~~~~d 411 (475)
++. ..+...-...+.++|+||+++|+.+. ..+.|..|++...+.. .+.+ ...+..-.+++.+ +|++.+++..+
T Consensus 211 -~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 211 -NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp -TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred -CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 433 23333345678999999998887775 4678999998643332 2233 2245677899999 59987766544
Q ss_pred -CeEEEEECC--CCeeEEEEe
Q 011924 412 -DFVHVYDVK--SGYEKEQEI 429 (475)
Q Consensus 412 -g~i~iwd~~--~~~~~~~~~ 429 (475)
+.|..|+.. .+..+..+.
T Consensus 288 g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 288 GMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp HHHHHSCCTTSCCCEEEEEEE
T ss_pred ceEEEEECCCCCCCCEEEEEE
Confidence 344444533 244444443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.027 Score=53.00 Aligned_cols=224 Identities=11% Similarity=0.009 Sum_probs=117.8
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..+.++.++.+.+++++..|.|.. ..+... ........ ...+.+..|.+ .+++. +++++ .++.|.. ....++
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~--~~~~~-~~~~~-~~g~v~~-S~DgG~ 152 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKA--LGNGS-AEMIT-NVGAIYR-TKDSGK 152 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEE--EETTE-EEEEE-TTCCEEE-ESSTTS
T ss_pred ccEEEEEecCCeEEEEECCCeEEE-ECCCCC-CceECccccCCCCCeEEEEE--ECCCC-EEEEe-CCccEEE-EcCCCC
Confidence 357788885455555667775543 333222 22111111 12234566665 55554 34444 4554422 122232
Q ss_pred eeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe-ec
Q 011924 269 LSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CG 345 (475)
Q Consensus 269 ~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l-~~ 345 (475)
.-.... ....+. .+++.|++.+++++ ..+.++.-.-..|+....+ ..
T Consensus 153 tW~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~ 202 (327)
T 2xbg_A 153 NWQALVQEAIGVMR-----------------------------NLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRT 202 (327)
T ss_dssp SEEEEECSCCCCEE-----------------------------EEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECC
T ss_pred CCEEeecCCCcceE-----------------------------EEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCC
Confidence 222221 233445 88899988877666 4455544321113332222 23
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec----CCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 346 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
....+..+++.|++++++ ++.+|.+.+++... +..-..+.. ....+..+++.|++.+++++. ++.| ++....
T Consensus 203 ~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg 278 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG 278 (327)
T ss_dssp SSSCEEEEEECTTSCEEE-EETTTEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST
T ss_pred CCCccceeEECCCCCEEE-EeCCceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC
Confidence 456788999999887654 45678887774221 221111111 123578999999888777765 5656 344444
Q ss_pred CeeEEEEe---ccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 422 GYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 422 ~~~~~~~~---~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
|..-..+. .....+.++.|.+++. +++++.+|.
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~ 314 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI 314 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce
Confidence 43322222 1245678899986554 556666653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0079 Score=62.70 Aligned_cols=206 Identities=13% Similarity=-0.021 Sum_probs=114.8
Q ss_pred cCcEEEEEec-CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe-CC-----CeEEEEECCCCeee
Q 011924 198 KDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN-ND-----CGVRDFDMGKYQLS 270 (475)
Q Consensus 198 ~~~~lvsg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s-~d-----g~v~iwd~~~~~~~ 270 (475)
++.++++||. .+.+.+||..+........ .... ..-.++.+ .++|+. ++.|+ .+ ..+.+||..+.+..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~~~-R~~~s~~~--~~dg~i-yv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQVA-RGYQSSAT--MSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEECCC-CSSC-CSSCEEEE--CTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeECCC-CCcc-ccccceEE--ecCCeE-EEEeCcccCCcccccceEeCCCCCcce
Confidence 8899999984 4589999987654332111 1111 11123334 568875 67766 34 56899999876643
Q ss_pred eee-----ecccc------------EEec-cCCceE-----EEEEEeecccceEEEEee-------------eeeeEEEC
Q 011924 271 KHF-----RFPWP------------VNVS-SSYCII-----LLCRLLNFMTEKVIICLL-------------CLQHSSQS 314 (475)
Q Consensus 271 ~~~-----~~~~~------------v~~s-~~~~~l-----~~~~v~d~~~~~~~~~~~-------------~i~~~~~s 314 (475)
..- ..... ..|. .++..+ ..+..||..+........ ...++.+.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~ 407 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 407 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEecc
Confidence 320 00000 0011 111111 256778887665432211 11233343
Q ss_pred -CCCcEEEEEeCCC-----------cEEEEECCCCceEEEe--ecCCCCe-EEEEEecCCCEEEEEeCC-----------
Q 011924 315 -PDGKLLIIVGDNP-----------DGLLVDSMTGKTIASL--CGHLDFS-FASAWHPNGVTFATGNQD----------- 368 (475)
Q Consensus 315 -p~g~~l~~~~~dg-----------~i~iwd~~~~~~~~~l--~~h~~~v-~~~~~sp~g~~l~t~s~d----------- 368 (475)
.+++++++|+.++ .+.+||..+..-.... ..+.... .+++..|++++++.|+.+
T Consensus 408 ~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~ 487 (656)
T 1k3i_A 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 487 (656)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcc
Confidence 3788888887532 5778888776644332 2222222 345667899999999864
Q ss_pred CeEEEEECCCCCceEEEEe---cCCCceEEEEEccCCCEEEEEcC
Q 011924 369 KTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg~~la~~~~ 410 (475)
..+.+||..+ .+- ..+. ..........+.|+|++++.|+.
T Consensus 488 ~~v~~ydp~t-~~W-~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 488 FTPEIYVPEQ-DTF-YKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCEEEEGGG-TEE-EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceEEEcCCC-Cce-eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999865 331 2222 11222334556799999999985
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.025 Score=58.39 Aligned_cols=201 Identities=7% Similarity=0.001 Sum_probs=112.8
Q ss_pred EEEEEE--cCcEEE-EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 192 VSTLAV--KDKLLV-AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 192 v~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..+|++ .++.|+ +=...+.|..++++..... ..+....-.....|++ .+.+..++++-...+.|.+.++....
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--~~v~~~~~~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--QNVVVSGLLSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----C--EEEECSSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--EEEEeCCCCCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCC
Confidence 456666 344444 5455688888887654211 1222222245678888 77666667777788999999987543
Q ss_pred eeeee-eccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEeec
Q 011924 269 LSKHF-RFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLCG 345 (475)
Q Consensus 269 ~~~~~-~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~~ 345 (475)
....+ ....... .+++.|.+..|..+. ..+.|...++...........
T Consensus 118 ~~~l~~~~l~~P~-----------------------------~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 118 RKVLFWQELDQPR-----------------------------AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp CEEEECSSCSCCC-----------------------------CEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEEeCCCCCCc-----------------------------eEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 22222 1112223 788998655555543 246677777653322223333
Q ss_pred CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee
Q 011924 346 HLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 424 (475)
Q Consensus 346 h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~ 424 (475)
.-.....++++|++..|+.+. ..+.|...|+.. ........+.......+++..+ ...++-...+.|...|..+|..
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC-CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC-CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 445688999999766665554 466788888853 2222222212223346777655 3444444567899999877754
Q ss_pred EEE
Q 011924 425 KEQ 427 (475)
Q Consensus 425 ~~~ 427 (475)
...
T Consensus 247 ~~~ 249 (619)
T 3s94_A 247 LRE 249 (619)
T ss_dssp CEE
T ss_pred cEE
Confidence 433
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.029 Score=53.56 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=80.3
Q ss_pred eEEECCCCcEEEEEeCC-------------CcEEEEECCCCc---------eEEEeecCCCCeEEEEEec-CCCEEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDN-------------PDGLLVDSMTGK---------TIASLCGHLDFSFASAWHP-NGVTFATGN 366 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d-------------g~i~iwd~~~~~---------~~~~l~~h~~~v~~~~~sp-~g~~l~t~s 366 (475)
.++|.|+|.+.++.+.. +.|.-++.. |+ ....-.++. ....++|+| +++++++-.
T Consensus 139 ~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 139 RIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred eEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence 78999999877775432 455555543 32 111122343 356799999 677665543
Q ss_pred CCC---eEEEEECCC---------------CCceEEEEecCCCceEEEEE-------ccCCCEEEEEcCCCeEEEEECCC
Q 011924 367 QDK---TCRIWDLRN---------------LSESVAVLKGNLGAIRSIRY-------TSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 367 ~dg---~v~iwd~~~---------------~~~~~~~~~~~~~~v~~l~~-------spdg~~la~~~~dg~i~iwd~~~ 421 (475)
... .|.+...-. ...++..+.....+...++| ..+|+++++.-..+.|...++..
T Consensus 217 g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 217 GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 322 233322100 01234444222346778888 35787777777778899999875
Q ss_pred C-eeE--EEEe-ccCCCeEEEEEcCCCCeEEEEEe
Q 011924 422 G-YEK--EQEI-DFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 422 ~-~~~--~~~~-~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
. ... ..+. ...+.+.++++.|||. |+++.+
T Consensus 297 ~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 297 NMEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp GGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred CCcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence 3 222 2222 2246799999999995 455444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.032 Score=52.09 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=115.4
Q ss_pred EEEEc---CcEEEEEecCceEEEEeCCCCCceEEEeeecC----CCC--ceeEEEEE-eCCCCCeEEEEEe---------
Q 011924 194 TLAVK---DKLLVAGGFQGELICKHLDRPGVSFCSRTTYD----DNA--ITNAVEIY-GSPSGAVHFTASN--------- 254 (475)
Q Consensus 194 ~l~~~---~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~----~~~--~v~~l~~~-~s~~g~~~l~s~s--------- 254 (475)
+..|+ +.++++.-..|+|..|+....... .. ...+ ... .+..|.+. ..|.+. ++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g 93 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFAD 93 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccc
Confidence 56673 444444447999999998644332 12 2222 122 23555551 026655 355433
Q ss_pred ----CCCeEEEEECC---CCeeeeeeecc--------------ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 255 ----NDCGVRDFDMG---KYQLSKHFRFP--------------WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 255 ----~dg~v~iwd~~---~~~~~~~~~~~--------------~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
.+..|..||+. +++.+...... ...+ .+++
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n-----------------------------Dvav 144 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV-----------------------------QSAQ 144 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE-----------------------------EEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc-----------------------------eeEE
Confidence 26789999998 77776655421 1244 8999
Q ss_pred CCCCcEEEEEeCC-CcEEEEECCCCceEEEeec------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 314 SPDGKLLIIVGDN-PDGLLVDSMTGKTIASLCG------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 314 sp~g~~l~~~~~d-g~i~iwd~~~~~~~~~l~~------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.++|+..++++.. +.|..++.. |+.+..+.. .......++++|+|++|++....+.+..+|+..+......+
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~ 223 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPV 223 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEEC
T ss_pred CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecc
Confidence 9999999998888 888877764 443333321 11235689999999999988779999999997532201112
Q ss_pred e--cC---CCceEEE-EEccCCCE-EEEEcCCCeEEEEEC
Q 011924 387 K--GN---LGAIRSI-RYTSDGRY-MATAEPADFVHVYDV 419 (475)
Q Consensus 387 ~--~~---~~~v~~l-~~spdg~~-la~~~~dg~i~iwd~ 419 (475)
. +. ......+ .--.+|+. |++....+.+.+.+.
T Consensus 224 ~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 224 KINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp EESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECS
T ss_pred cccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECC
Confidence 1 21 1123343 33347887 445555666666553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.019 Score=59.30 Aligned_cols=210 Identities=9% Similarity=0.000 Sum_probs=116.2
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeee-eeec-cccEEeccC
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK-HFRF-PWPVNVSSS 284 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~-~~~v~~s~~ 284 (475)
....|+..++....... ......-....+|++ ++.+..++++-...+.|..+++....... .+.. .....
T Consensus 16 ~~~~I~~i~~~~~~~~~--~~~~~~~~~~~~ld~--~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~---- 87 (619)
T 3s94_A 16 NRRDLRLVDATNGKENA--TIVVGGLEDAAAVDF--VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD---- 87 (619)
T ss_dssp CSSBEEEECCC-----------CBCCSCEEEEEE--ETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE----
T ss_pred ccccEEEEeCCCCcceE--EEEEcCCCceEEEEE--EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC----
Confidence 35667777776432111 112222334567777 87777667776667888888886543211 2221 13344
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
.+++.+.+..| ++-...+.|.+.++........+.........++++|.+.+|+
T Consensus 88 -------------------------GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly 142 (619)
T 3s94_A 88 -------------------------GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY 142 (619)
T ss_dssp -------------------------EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEE
T ss_pred -------------------------eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEE
Confidence 88999955544 4445678899999864433333334556678999999755555
Q ss_pred EEeC--CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEeccCCCeEEEEE
Q 011924 364 TGNQ--DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 364 t~s~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
.... .+.|...++.. ................++++++++.|+.+ ...+.|..+|+.................+|++
T Consensus 143 ~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~ 221 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL 221 (619)
T ss_dssp EEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEE
T ss_pred EeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEE
Confidence 5543 45677777743 22222333344567899999976666655 44678999998654333222212234456777
Q ss_pred cCCCCeEEEEEe
Q 011924 441 SPDTESLFIGVW 452 (475)
Q Consensus 441 spdg~~l~~~~~ 452 (475)
..+ .|+.+-|
T Consensus 222 ~~~--~ly~td~ 231 (619)
T 3s94_A 222 FED--ILYWTDW 231 (619)
T ss_dssp SSS--EEEEECT
T ss_pred eCC--EEEEecC
Confidence 655 6665543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.026 Score=54.47 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=123.7
Q ss_pred cCCCeEEEecCCeEEEEecCCC-CceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe-------cCc
Q 011924 140 TSKHDVYLMSHFSVIHWSSLTS-SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-------FQG 209 (475)
Q Consensus 140 ~~~~~v~~~~~~~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~-------~dg 209 (475)
.+.+.|-+..+..|+||+.... ...++++..+ .+.+.+|..... +.++++..| -.|
T Consensus 114 is~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~--------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 114 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHS--------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp EETTEEEEECSSEEEEEESSSSCCCEEEEECCG--------------GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred cCCCeEEEEcCCeeEEecccCCCCchhheecch--------------hcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence 4566788899999999997542 2244444322 223467888777 667766443 248
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC---CeEEEEECCCC-eeeeeeec-cccEEeccC
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND---CGVRDFDMGKY-QLSKHFRF-PWPVNVSSS 284 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d---g~v~iwd~~~~-~~~~~~~~-~~~v~~s~~ 284 (475)
.+.+|+++.... +...+|.+.-..+.+.-.+....+++.+... +.++|.++... .....|.. .-.+.|.|.
T Consensus 180 ~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 180 AMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEEEEESTTCCE----EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred eEEEeecccccc----chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 889999876442 4455665444333331111112234444433 67888887432 00001100 000111110
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
. ...-++ ++.+|+.-..+...+.-|.+++||+.+|.++..-+-..+.|+..+-+....-++.
T Consensus 256 ~-----------~~DFPv-------amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~ 317 (494)
T 1bpo_A 256 A-----------QNDFPV-------AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG 317 (494)
T ss_dssp S-----------TTCCEE-------EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEE
T ss_pred c-----------ccCcee-------EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEE
Confidence 0 000000 7889998889999999999999999999998877777788888888777777788
Q ss_pred EeCCCeEEEEECCC
Q 011924 365 GNQDKTCRIWDLRN 378 (475)
Q Consensus 365 ~s~dg~v~iwd~~~ 378 (475)
.+..|.|.--.+..
T Consensus 318 Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 318 VNRKGQVLSVCVEE 331 (494)
T ss_dssp EETTCEEEEEEECT
T ss_pred EccCceEEEEEEcc
Confidence 88888877666643
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0048 Score=59.40 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc-----cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW-----PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG 317 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g 317 (475)
+.+|.. ++.+ .++.||.-++.....-+.+..+. .+. .+..||+|
T Consensus 29 ~~n~t~-i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~-----------------------------qlvlSpsG 77 (452)
T 3pbp_A 29 SQNGTR-IVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTF-----------------------------HVISSTSG 77 (452)
T ss_dssp ETTTTE-EEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTC-----------------------------EEEECTTS
T ss_pred EcCCCE-EEEE-ECCEEEEEECCCCCcceEEecCcccccCcee-----------------------------EEEECCCC
Confidence 456665 4443 45788888886443344444332 344 78999999
Q ss_pred cEEEEEeCCCcEEEEECCCCc------------eEEEeec------CCCCeEEEEEec---CCCEEEEEeCCCeEEEEEC
Q 011924 318 KLLIIVGDNPDGLLVDSMTGK------------TIASLCG------HLDFSFASAWHP---NGVTFATGNQDKTCRIWDL 376 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~~~~------------~~~~l~~------h~~~v~~~~~sp---~g~~l~t~s~dg~v~iwd~ 376 (475)
++||..+.. .|.|..+..+. ....+.- ...+|..+.||| .+..|++-..|++||+||+
T Consensus 78 ~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl 156 (452)
T 3pbp_A 78 DLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDI 156 (452)
T ss_dssp SEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEET
T ss_pred CEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEc
Confidence 999998664 68888876331 1122321 256799999999 5678999999999999999
Q ss_pred CCC-CceEEEEec---------CCCceEEEEEccCCCEEEE--EcCCCeEEEE
Q 011924 377 RNL-SESVAVLKG---------NLGAIRSIRYTSDGRYMAT--AEPADFVHVY 417 (475)
Q Consensus 377 ~~~-~~~~~~~~~---------~~~~v~~l~~spdg~~la~--~~~dg~i~iw 417 (475)
... ..+. .+.. ....|.+++|.++|-.|.. .+..|-|+-.
T Consensus 157 ~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 157 LNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 752 2333 3331 1246889999998865555 4477776554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.036 Score=52.67 Aligned_cols=140 Identities=17% Similarity=0.139 Sum_probs=84.3
Q ss_pred eEEECC--CCc-EEEEE-eC--CCcEEEEECCCC-c---eEEEeecC-CCCeEEEEEecCCCEEEEEeC-----------
Q 011924 310 HSSQSP--DGK-LLIIV-GD--NPDGLLVDSMTG-K---TIASLCGH-LDFSFASAWHPNGVTFATGNQ----------- 367 (475)
Q Consensus 310 ~~~~sp--~g~-~l~~~-~~--dg~i~iwd~~~~-~---~~~~l~~h-~~~v~~~~~sp~g~~l~t~s~----------- 367 (475)
.+.+.+ +|. +|+++ .. +..+.+|++..+ . .+..+.+. -.....+++.|+|++.++...
T Consensus 116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHH
T ss_pred eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccch
Confidence 455533 443 34443 33 456777776543 2 22334432 245789999999987777541
Q ss_pred ------CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCC-CeeE-EEEeccCCCeEEE
Q 011924 368 ------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKS-GYEK-EQEIDFFGEISGI 438 (475)
Q Consensus 368 ------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~-~~~~-~~~~~~~~~i~~l 438 (475)
.|.|.-+|. ++ +..+.......+.++|||||+.|+.+. ..+.|+.|++.. +... .......+..-++
T Consensus 196 ~~~~~~~g~vyr~d~---~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi 271 (355)
T 3sre_A 196 MHLGLAWSFVTYYSP---ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNI 271 (355)
T ss_dssp HHTTCCCEEEEEECT---TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEE
T ss_pred hhccCCccEEEEEEC---Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceE
Confidence 234444444 33 223333334568999999998887765 568999999863 3221 1122345778899
Q ss_pred EEcC-CCCeEEEEEec
Q 011924 439 SFSP-DTESLFIGVWD 453 (475)
Q Consensus 439 ~fsp-dg~~l~~~~~D 453 (475)
++.+ +|++.+++.++
T Consensus 272 ~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EECTTTCCEEEEEESC
T ss_pred EEeCCCCcEEEEecCC
Confidence 9999 59877766554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.053 Score=50.96 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=80.6
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC-CCCCceEEEEe
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL-RNLSESVAVLK 387 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~-~~~~~~~~~~~ 387 (475)
.+.+.+++..++++ .++.|+. ....|+....+ .++...+.++++.|++.+++.+...+..+-+|- -...+.+. .
T Consensus 126 ~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~ 201 (327)
T 2xbg_A 126 LIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--R 201 (327)
T ss_dssp EEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--C
T ss_pred EEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--C
Confidence 66666667666655 4554432 22345544433 345567899999999988887765555555553 11123331 2
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-c---cCCCeEEEEEcCCCCeEEEE
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-D---FFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-~---~~~~i~~l~fspdg~~l~~~ 450 (475)
.....+..+++.|++++++.+ .+|.+++.+...|..-..+. . ....+.++++.|++..++++
T Consensus 202 ~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp CSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred CCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe
Confidence 344578899999999876554 57777776433233222221 1 12358899999887766654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.011 Score=58.64 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=95.2
Q ss_pred eeEEEEEeCC-CCCeEEEEEeCCCeEEEEECCCCeeeeeeecc----ccEEeccCCceEEEEEEeecccceEEEEeeeee
Q 011924 235 TNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP----WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQ 309 (475)
Q Consensus 235 v~~l~~~~s~-~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~ 309 (475)
...|++ .| ++..++++....+.|++.|+..+.+....... ....
T Consensus 141 p~~la~--dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~----------------------------- 189 (496)
T 3kya_A 141 NGRLAF--DPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR----------------------------- 189 (496)
T ss_dssp EEEEEE--ETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-----------------------------
T ss_pred CCEEEE--ccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-----------------------------
Confidence 467777 88 35555666555577999999887766544321 1244
Q ss_pred eEEE-------CCCCcEEEEEeCCC-------cEEEEECCC-CceE-----EEeecCCCCeEEEEEec-CCCEEEEEeCC
Q 011924 310 HSSQ-------SPDGKLLIIVGDNP-------DGLLVDSMT-GKTI-----ASLCGHLDFSFASAWHP-NGVTFATGNQD 368 (475)
Q Consensus 310 ~~~~-------sp~g~~l~~~~~dg-------~i~iwd~~~-~~~~-----~~l~~h~~~v~~~~~sp-~g~~l~t~s~d 368 (475)
.++| +++|+.|+++...+ .+.+++... |... ..+... .....++++| ++.++++-..+
T Consensus 190 ~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~ 268 (496)
T 3kya_A 190 SIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEK 268 (496)
T ss_dssp EEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTT
T ss_pred EEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCC
Confidence 8899 99999776665543 266676433 2221 223221 2345778999 55666666678
Q ss_pred CeEEEEECC-------CCCce-----------EEE-Ee-cCCCceEEEEEccCCCEEEEE-cCCCeEEEEEC
Q 011924 369 KTCRIWDLR-------NLSES-----------VAV-LK-GNLGAIRSIRYTSDGRYMATA-EPADFVHVYDV 419 (475)
Q Consensus 369 g~v~iwd~~-------~~~~~-----------~~~-~~-~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~ 419 (475)
+.|..+|+. + +.. ... +. +.....+.++|+|+|++|+.+ +..+.|+.++.
T Consensus 269 g~V~r~d~~~~~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 269 GQVFRLDLVDYFKTIKN-GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEECHHHHHHHHHT-TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecccccccccC-ceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 899999986 3 221 112 22 223346799999999965554 55678998654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00036 Score=73.36 Aligned_cols=206 Identities=9% Similarity=-0.059 Sum_probs=115.0
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC----Ceeeeeee-ccccEEec
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK----YQLSKHFR-FPWPVNVS 282 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~----~~~~~~~~-~~~~v~~s 282 (475)
.+.|+..++...... .+... ...+..|+| .+.+..++++-...+.|+.+++.+ ......+. ......
T Consensus 385 ~~~I~~id~~~~~~~---~~~~~-~~~p~gla~--d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-- 456 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYT---SLIPN-LRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-- 456 (699)
T ss_dssp TTC-CEECTTSCCEE---CCSCC-CTTCCCCEE--ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC--
T ss_pred ccceEEEeCCCCcce---eeecc-CcceEEEcc--ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc--
Confidence 356777776654322 22222 233556777 776666566666678899998865 11111111 111122
Q ss_pred cCCceEEEEEEeecccceEEEEeeeeeeEEECCC-CcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCE
Q 011924 283 SSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 283 ~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~ 361 (475)
.+++.+. ++++++-...+.|.++++........+.........++++|.+.+
T Consensus 457 ---------------------------glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ 509 (699)
T 1n7d_A 457 ---------------------------GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGF 509 (699)
T ss_dssp ---------------------------CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSC
T ss_pred ---------------------------eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCc
Confidence 6788864 444454456678999998654433333333345678999996555
Q ss_pred EEEEeC-C-CeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEE-EEEcCCCeEEEEECCCCeeEEEEec---cCCC
Q 011924 362 FATGNQ-D-KTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYM-ATAEPADFVHVYDVKSGYEKEQEID---FFGE 434 (475)
Q Consensus 362 l~t~s~-d-g~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l-a~~~~dg~i~iwd~~~~~~~~~~~~---~~~~ 434 (475)
|+.+.. . +.|.++++.. .....+ .........|+|+|++..| ++-+..+.|.++++.... ...+.. ....
T Consensus 510 ly~td~~~~~~I~~~~~dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~ 586 (699)
T 1n7d_A 510 MYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH 586 (699)
T ss_dssp CEECCCSSSCCEEBCCSSS--CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSS
T ss_pred EEEcccCCCCeEEEEeCCC--CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCC
Confidence 554433 2 6788887753 222222 2223456789999976544 444566789999986433 333332 1234
Q ss_pred eEEEEEcCCCCeEEEEEec
Q 011924 435 ISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 435 i~~l~fspdg~~l~~~~~D 453 (475)
..+|++..+ .|+.+.+.
T Consensus 587 P~glavd~~--~lywtd~~ 603 (699)
T 1n7d_A 587 PFSLAVFED--KVFWTDII 603 (699)
T ss_dssp CCCCEEETT--EEEEECST
T ss_pred ceEeEEECC--EEEEEeCC
Confidence 556666543 56655443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.078 Score=49.25 Aligned_cols=237 Identities=8% Similarity=0.037 Sum_probs=131.1
Q ss_pred EecCCCeEEEec---CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecC------
Q 011924 138 WATSKHDVYLMS---HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQ------ 208 (475)
Q Consensus 138 ~~~~~~~v~~~~---~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~d------ 208 (475)
++.+...||+.. +..++..+.......++.+ ..+.-+.+++++|+-....
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---------------------~~~~~i~~~g~~Iyy~~~~~~~~~~ 79 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---------------------DTAMYINADKNYVYYVRNNNQKITS 79 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---------------------EEEEEEEECSSEEEEEEECC-----
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---------------------CceeeEEEcCCEEEEEECCCCcccc
Confidence 556677788764 4666666654333333321 2345666778877766543
Q ss_pred --------ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE---eCCCeEEEEECCCCeeeeeeeccc
Q 011924 209 --------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS---NNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 209 --------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~---s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
..|+..+++..... .+... . +..+ ++.++.++.+. .....|...++..... ..+....
T Consensus 80 ~~~~~~n~~~Iy~i~~dg~~~~---~l~~~---~--~~~~--s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~ 148 (302)
T 3s25_A 80 QTFFSYDRNSLCRIKRNGHGST---VLDPD---P--CIYA--SLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHY 148 (302)
T ss_dssp -CCSSCCSEEEEEEETTSCCCE---EEECS---C--EEEE--EEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSC
T ss_pred cceeccCCCeEEEEeCCCCcce---EeecC---C--ccEE--EEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCC
Confidence 46666666655432 22111 1 1244 67888755554 2334555556654332 2222111
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
. . +++|+++.|...+. ...|...++..+.....+. +... ..++
T Consensus 149 ~-~-------------------------------~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~ 192 (302)
T 3s25_A 149 L-F-------------------------------TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVV 192 (302)
T ss_dssp C-C-------------------------------CSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEE
T ss_pred c-e-------------------------------EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceee
Confidence 1 2 35677888876655 5788888876555443333 2232 3466
Q ss_pred cCCCEEEEEeCCC--eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc--CCCeEEEEECCCCeeEEEEeccC
Q 011924 357 PNGVTFATGNQDK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE--PADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 357 p~g~~l~t~s~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
|++.+|+-....+ .|..-++. +.....+... .+ ..|+|+|++|+.+. ..+.|..-++... ....+..
T Consensus 193 P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~-~r~~l~~-- 263 (302)
T 3s25_A 193 LDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT-GFKELAK-- 263 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEECSS--SCCCEECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEETTSC-CCEEEEE--
T ss_pred ecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEECCCC-ccEEeeC--
Confidence 9888888776543 55555664 3334444432 33 44888999888663 2467777776543 3333322
Q ss_pred CCeEEEEEcCCCCeEEEEEec
Q 011924 433 GEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~~~~D 453 (475)
+.+. .+++.+.+|+-.-+.
T Consensus 264 ~~~~--~i~i~~d~Iy~td~~ 282 (302)
T 3s25_A 264 GEFC--NINVTSQYVYFTDFV 282 (302)
T ss_dssp SCEE--EEEECSSEEEEEETT
T ss_pred Cccc--eEEEeCCEEEEEECC
Confidence 2333 456677788877654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.011 Score=54.70 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=108.4
Q ss_pred EcCcEEEEEe-cC-----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEEEECC
Q 011924 197 VKDKLLVAGG-FQ-----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMG 265 (475)
Q Consensus 197 ~~~~~lvsg~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~iwd~~ 265 (475)
+++.+++.|| .+ ..+.++|+.+....... ..........++.+ ++. +++.|+.+ ..+.+||+.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~----~~~-l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-SITRKRRYVASVSL----HDR-IYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE----TTE-EEEECCBCSSCBCCCEEEEETT
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-CCChhhccccEEEE----CCE-EEEEcCCCCCccCceEEEEECC
Confidence 3667788887 33 36788887765433211 11111111122222 444 56666644 358888987
Q ss_pred CCe---eeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-----CcEEEEECCCC
Q 011924 266 KYQ---LSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-----PDGLLVDSMTG 337 (475)
Q Consensus 266 ~~~---~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~~ 337 (475)
+.+ ....-..+.+... ..+...++++++.|+.+ ..+.+||+.+.
T Consensus 87 ~~~~~~W~~~~~~p~~r~~----------------------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGL----------------------------AGATTLGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp CCTTCCCEEECCCSSCCBS----------------------------CEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCeeEECCCCCCCccc----------------------------eeEEEECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 765 3222111111110 11112267777777643 36889998876
Q ss_pred ceEE--EeecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEE
Q 011924 338 KTIA--SLCGHLDFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 338 ~~~~--~l~~h~~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~ 407 (475)
+-.. .+........++. -++++++.|+.+ ..+.+||+.+ .+ -..+.. .......+. -++++++.
T Consensus 139 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~i~v~ 212 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHT-GH-WTNVTPMATKRSGAGVAL--LNDHIYVV 212 (301)
T ss_dssp EEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred eEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCC-Cc-EEeCCCCCcccccceEEE--ECCEEEEE
Confidence 5322 2221111112222 267777777654 3588999865 32 222221 111112222 25777777
Q ss_pred EcCC-----CeEEEEECCCCeeEEEEeccCC--CeEEEEEcCCCCeEEEEEecCC
Q 011924 408 AEPA-----DFVHVYDVKSGYEKEQEIDFFG--EISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 408 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~l~fspdg~~l~~~~~D~~ 455 (475)
|+.+ ..|.+||+.+..-......... ....+.+ +++.++.|+.++.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGN 265 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCC
Confidence 7754 4699999988754332111111 1222222 6677777776643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.02 Score=53.00 Aligned_cols=219 Identities=13% Similarity=0.066 Sum_probs=106.7
Q ss_pred EcCcEEEEEecC----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEEEECCCC
Q 011924 197 VKDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMGKY 267 (475)
Q Consensus 197 ~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~iwd~~~~ 267 (475)
+++.+++.||.+ ..+.++|+........ .........-.++.+ ++. +++.|+.+ ..+.+||..+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~----~~~-lyv~GG~~~~~~~~~~~~~d~~~~ 87 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQV-AELPSRRCRAGMVYM----AGL-VFAVGGFNGSLRVRTVDSYDPVKD 87 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE----TTE-EEEESCBCSSSBCCCEEEEETTTT
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEc-ccCCcccccceEEEE----CCE-EEEEeCcCCCccccceEEECCCCC
Confidence 356677788764 4577888776543321 111111111112222 444 56776544 35788888776
Q ss_pred eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC-----cEEEEECCCCceEEE
Q 011924 268 QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP-----DGLLVDSMTGKTIAS 342 (475)
Q Consensus 268 ~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~~~~ 342 (475)
+....-..+.+...+ +++ ..++++++.|+.++ .+.+||+.+.+-. .
T Consensus 88 ~W~~~~~~p~~r~~~---------------------------~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~ 138 (302)
T 2xn4_A 88 QWTSVANMRDRRSTL---------------------------GAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF-H 138 (302)
T ss_dssp EEEEECCCSSCCBSC---------------------------EEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEE-E
T ss_pred ceeeCCCCCccccce---------------------------EEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEe-e
Confidence 544322211111100 112 22677888887543 5778898766532 2
Q ss_pred eecCC--CCeEEEEEecCCCEEEEEeCC-------CeEEEEECCCCCceEEEEe---cCCCceEEEEEccCCCEEEEEcC
Q 011924 343 LCGHL--DFSFASAWHPNGVTFATGNQD-------KTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 343 l~~h~--~~v~~~~~sp~g~~l~t~s~d-------g~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+.... ..-.+++. -++++++.|+.+ ..+.+||+.+ .+ -..+. ........+. -++++++.|+.
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 213 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATT-NE-WTYIAEMSTRRSGAGVGV--LNNLLYAVGGH 213 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCC-Cc-EEECCCCccccccccEEE--ECCEEEEECCC
Confidence 22111 11112222 266777776542 3588899865 32 22221 1111122222 26777777765
Q ss_pred C-----CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 411 A-----DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 411 d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
+ ..+.+||+.+..-..............+..-+++.++.|+.++.
T Consensus 214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~ 263 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS 263 (302)
T ss_dssp SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCC
Confidence 4 46999999876533221111111111112226677777776653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.075 Score=49.06 Aligned_cols=189 Identities=12% Similarity=0.094 Sum_probs=97.4
Q ss_pred EEcCcEEEEEecCc-----eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-----eEEEEECC
Q 011924 196 AVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDMG 265 (475)
Q Consensus 196 ~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-----~v~iwd~~ 265 (475)
..++.+++.||.++ .+.++|..+........ .........++.+ ++. +++.|+.++ .+.+||+.
T Consensus 59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~----~~~-iyv~GG~~~~~~~~~~~~~d~~ 132 (302)
T 2xn4_A 59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN-MRDRRSTLGAAVL----NGL-LYAVGGFDGSTGLSSVEAYNIK 132 (302)
T ss_dssp EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE----TTE-EEEEEEECSSCEEEEEEEEETT
T ss_pred EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC-CCccccceEEEEE----CCE-EEEEcCCCCCccCceEEEEeCC
Confidence 34888888988653 57788877655432211 1111111122222 444 466665443 46778887
Q ss_pred CCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-------CCcEEEEECCCCc
Q 011924 266 KYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-------NPDGLLVDSMTGK 338 (475)
Q Consensus 266 ~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-------dg~i~iwd~~~~~ 338 (475)
+.+....-..+.+...+ +++ .-++++++.|+. -..+.+||+.+.+
T Consensus 133 ~~~W~~~~~~p~~r~~~---------------------------~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 133 SNEWFHVAPMNTRRSSV---------------------------GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEECCCSSCCBSC---------------------------EEE-EETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCeEeecCCCCCcccCc---------------------------eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 76544332222111100 112 226677777764 2458899988765
Q ss_pred eEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEecC---CCceEEEEEccCCCEEEEE
Q 011924 339 TIAS--LCGHLDFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKGN---LGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 339 ~~~~--l~~h~~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~~~---~~~v~~l~~spdg~~la~~ 408 (475)
-... +........++. -++++++.|+.+ ..+.+||+.+ .+ -..+... ......+ .-++++++.|
T Consensus 185 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~~~~~r~~~~~~--~~~~~i~v~G 258 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTT-NA-WRQVADMNMCRRNAGVC--AVNGLLYVVG 258 (302)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEE--EETTEEEEEC
T ss_pred EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCC-CC-EeeCCCCCCccccCeEE--EECCEEEEEC
Confidence 3221 111111112222 267777887754 3688999865 32 2222211 1111122 2367777787
Q ss_pred cCC-----CeEEEEECCCCee
Q 011924 409 EPA-----DFVHVYDVKSGYE 424 (475)
Q Consensus 409 ~~d-----g~i~iwd~~~~~~ 424 (475)
+.+ ..|.+||+.+..-
T Consensus 259 G~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 259 GDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBCSSSBCCCEEEEETTTTEE
T ss_pred CcCCCcccccEEEEcCCCCeE
Confidence 755 3589999987643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.18 Score=47.85 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred eEEECCCCcEEEEEeCC-------------CcEEEEECCCCc------------eEEEe-ecCCCCeEEEEEec-CCCEE
Q 011924 310 HSSQSPDGKLLIIVGDN-------------PDGLLVDSMTGK------------TIASL-CGHLDFSFASAWHP-NGVTF 362 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~d-------------g~i~iwd~~~~~------------~~~~l-~~h~~~v~~~~~sp-~g~~l 362 (475)
.++|.|+|.+.++.+.. +.|.-++....- ....+ .++ .....++|+| +|+++
T Consensus 134 ~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~ 212 (353)
T 2g8s_A 134 RLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALW 212 (353)
T ss_dssp CEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEE
T ss_pred cEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEE
Confidence 78999999777766542 456666654210 11112 233 3467899999 66655
Q ss_pred EEEeC-CCeEEEEECCCC------------------------------CceEEEEecCCCceEEEEEcc-------CCCE
Q 011924 363 ATGNQ-DKTCRIWDLRNL------------------------------SESVAVLKGNLGAIRSIRYTS-------DGRY 404 (475)
Q Consensus 363 ~t~s~-dg~v~iwd~~~~------------------------------~~~~~~~~~~~~~v~~l~~sp-------dg~~ 404 (475)
++-.. ++.=.|.-+... ..++..+..+ .++..++|.+ +|++
T Consensus 213 ~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l 291 (353)
T 2g8s_A 213 LNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKL 291 (353)
T ss_dssp EEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEE
T ss_pred EEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcE
Confidence 54332 211122211110 1123333333 3567888863 5777
Q ss_pred EEEEcCCCeEEEEECCCCeeEEEE--e-ccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 405 MATAEPADFVHVYDVKSGYEKEQE--I-DFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 405 la~~~~dg~i~iwd~~~~~~~~~~--~-~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+++.-..+.|...++..+...... . ...+.+.++++.|||...++. |..-+.++..
T Consensus 292 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t--d~~~g~I~ri 350 (353)
T 2g8s_A 292 FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT--DESSGELLKV 350 (353)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE--CSTTEEEEEE
T ss_pred EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE--eCCCCEEEEE
Confidence 777777788988888766433222 1 234589999999999855443 2233455443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.075 Score=49.46 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=104.9
Q ss_pred EEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC-----C------CeEEEEECCCCee
Q 011924 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-----D------CGVRDFDMGKYQL 269 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~-----d------g~v~iwd~~~~~~ 269 (475)
+++.|+ ..+.+||..+..... ...........+-.. ..++. +++.|+. . ..+.+||..+.+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~--~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLV--TKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEE--CTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEE--EECCE-EEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 555666 578899988766442 221111112222222 34555 4666652 1 1267788877665
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC--------CcEEEEECCCCceEE
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN--------PDGLLVDSMTGKTIA 341 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d--------g~i~iwd~~~~~~~~ 341 (475)
...-..+.+...+ +++. -++++++.|+.+ ..+.+||+.+.+- .
T Consensus 80 ~~~~~~p~~r~~~---------------------------~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~ 130 (315)
T 4asc_A 80 LGMPPLPSPRCLF---------------------------GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-G 130 (315)
T ss_dssp EECCCBSSCEESC---------------------------EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEE-E
T ss_pred EECCCCCcchhce---------------------------eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcE-e
Confidence 3322222221100 1111 266777777632 4588999887642 2
Q ss_pred EeecC-CCCeEEEEEecCCCEEEEEeC-C-----CeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCC
Q 011924 342 SLCGH-LDFSFASAWHPNGVTFATGNQ-D-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 342 ~l~~h-~~~v~~~~~sp~g~~l~t~s~-d-----g~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~d 411 (475)
.+..- .......+..-++++++.|+. + ..+.+||..+ .+ -..+.. .......+. -++++++.|+.+
T Consensus 131 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 206 (315)
T 4asc_A 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK-FE-WKELAPMQTARSLFGATV--HDGRIIVAAGVT 206 (315)
T ss_dssp ECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE--ETTEEEEEEEEC
T ss_pred ECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC-Ce-EEECCCCCCchhceEEEE--ECCEEEEEeccC
Confidence 22211 111111122246677777765 2 3688999865 22 122221 111112222 267777777754
Q ss_pred C-----eEEEEECCCCeeEEEEeccC--CCeEEEEEcCCCCeEEEEEecC
Q 011924 412 D-----FVHVYDVKSGYEKEQEIDFF--GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 412 g-----~i~iwd~~~~~~~~~~~~~~--~~i~~l~fspdg~~l~~~~~D~ 454 (475)
+ .+.+||+.+..-........ .....+.+ +++.++.|+.++
T Consensus 207 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~ 254 (315)
T 4asc_A 207 DTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFAT 254 (315)
T ss_dssp SSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEE
T ss_pred CCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccc
Confidence 3 58999998875433221111 11222222 667777787653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.043 Score=50.67 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=100.0
Q ss_pred EEEcCcEEEEEecC-----ceEEEEeCCCCC---ceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEE
Q 011924 195 LAVKDKLLVAGGFQ-----GELICKHLDRPG---VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRD 261 (475)
Q Consensus 195 l~~~~~~lvsg~~d-----g~i~vw~~~~~~---~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~i 261 (475)
...++.+++.||.+ ..+.++|+.+.. ...... .........++.+ ++. +++.|+.+ ..+.+
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~-~p~~r~~~~~~~~----~~~-lyv~GG~~~~~~~~~~~~ 132 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP-MNVRRGLAGATTL----GDM-IYVSGGFDGSRRHTSMER 132 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC-CSSCCBSCEEEEE----TTE-EEEECCBCSSCBCCEEEE
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC-CCCCccceeEEEE----CCE-EEEEcccCCCcccceEEE
Confidence 34588888888865 468888987766 432211 1111111122222 444 46666543 35788
Q ss_pred EECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-----CcEEEEECCC
Q 011924 262 FDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-----PDGLLVDSMT 336 (475)
Q Consensus 262 wd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~ 336 (475)
||+.+.+....-..+.+... +.+...++++++.|+.+ ..+.+||+.+
T Consensus 133 ~d~~~~~W~~~~~~p~~r~~----------------------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 133 YDPNIDQWSMLGDMQTAREG----------------------------AGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EETTTTEEEEEEECSSCCBS----------------------------CEEEEETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EcCCCCeEEECCCCCCCccc----------------------------ceEEEECCEEEEECCCCCCcccceEEEEeCCC
Confidence 88877665433222211110 11122267777887654 4688999887
Q ss_pred CceEEEeecC-CCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEE
Q 011924 337 GKTIASLCGH-LDFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMAT 407 (475)
Q Consensus 337 ~~~~~~l~~h-~~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~ 407 (475)
.+-. .+... .......+..-++++++.|+.+ ..+.+||+.+ .+ -..+.. .......+. -++++++.
T Consensus 185 ~~W~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~i~v~ 259 (301)
T 2vpj_A 185 GHWT-NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATV--LRGRLYAI 259 (301)
T ss_dssp TEEE-EECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CcEE-eCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEE--ECCEEEEE
Confidence 6533 22211 1111111122267777777764 4689999965 33 222221 111112222 26777777
Q ss_pred EcCC-----CeEEEEECCCCe
Q 011924 408 AEPA-----DFVHVYDVKSGY 423 (475)
Q Consensus 408 ~~~d-----g~i~iwd~~~~~ 423 (475)
|+.+ ..|.+||+.+..
T Consensus 260 GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 260 AGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCBCSSSBEEEEEEEETTTTE
T ss_pred cCcCCCcccccEEEEcCCCCe
Confidence 7755 468889988764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.048 Score=50.51 Aligned_cols=214 Identities=11% Similarity=0.027 Sum_probs=107.2
Q ss_pred CcEEEEEecC--ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC----CeEEEEECCCCeeeee
Q 011924 199 DKLLVAGGFQ--GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----CGVRDFDMGKYQLSKH 272 (475)
Q Consensus 199 ~~~lvsg~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d----g~v~iwd~~~~~~~~~ 272 (475)
+.+++.||.+ ..+.++|........... .........++.+ ++. +++.|+.+ ..+.+||+.+.+....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~----~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~ 85 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC-PFEKRRDAACVFW----DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSK 85 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC-CSCCCBSCEEEEE----TTE-EEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC-CCcccceeEEEEE----CCE-EEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence 3466677653 567888877655332111 1111111122222 444 57777644 5688888887665433
Q ss_pred eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC------CcEEEEECCCCceEEEeec-
Q 011924 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIASLCG- 345 (475)
Q Consensus 273 ~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------g~i~iwd~~~~~~~~~l~~- 345 (475)
-..+.+... ..+..-++++++.|+.+ ..+.+||+.+.+-.. +..
T Consensus 86 ~~~p~~r~~----------------------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~ 136 (306)
T 3ii7_A 86 LGPPTPRDS----------------------------LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSM 136 (306)
T ss_dssp ECCSSCCBS----------------------------CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCC
T ss_pred CCCCccccc----------------------------eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCC
Confidence 222211110 11122267788887754 468899988765322 221
Q ss_pred CCCCe-EEEEEecCCCEEEEEeC---------CCeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEEEEEcCC-
Q 011924 346 HLDFS-FASAWHPNGVTFATGNQ---------DKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA- 411 (475)
Q Consensus 346 h~~~v-~~~~~sp~g~~l~t~s~---------dg~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~la~~~~d- 411 (475)
..... .+++ .-++++++.|+. -..+.+||..+ .+ -..+.. .......+.+ ++++++.|+.+
T Consensus 137 p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 211 (306)
T 3ii7_A 137 LTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT-ET-WTELCPMIEARKNHGLVFV--KDKIFAVGGQNG 211 (306)
T ss_dssp SSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCEET
T ss_pred cCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCC-Ce-EEECCCccchhhcceEEEE--CCEEEEEeCCCC
Confidence 11111 1222 236677777653 24588999865 32 222221 1111122222 67777777643
Q ss_pred ----CeEEEEECCCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecC
Q 011924 412 ----DFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 412 ----g~i~iwd~~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
..+.+||+.+..-...-.. .......+.+ +++.++.|+.++
T Consensus 212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQG 258 (306)
T ss_dssp TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCC
Confidence 4689999987643222111 1112233333 667777777654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.013 Score=56.01 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=78.6
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce--EEEee---cCCCCeEEEEEecC---CCEEEEEeC-C-----CeEEEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLC---GHLDFSFASAWHPN---GVTFATGNQ-D-----KTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~l~---~h~~~v~~~~~sp~---g~~l~t~s~-d-----g~v~iwd 375 (475)
.++|.|+|+++++ ...+.|++++ .++. +..+. ........++|+|+ +..|+.+.. . ..|..|+
T Consensus 35 ~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 35 ALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 7899999985554 5668999998 4442 22221 12356889999998 555554433 2 5688888
Q ss_pred CCCCCc------eEEEEe---cCCCceEEEEEccCCCEEEEEcC-------------CCeEEEEECCCC-----------
Q 011924 376 LRNLSE------SVAVLK---GNLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSG----------- 422 (475)
Q Consensus 376 ~~~~~~------~~~~~~---~~~~~v~~l~~spdg~~la~~~~-------------dg~i~iwd~~~~----------- 422 (475)
... .. .+..+. ........++|.|||.+.++.+. .+.|.-++....
T Consensus 112 ~~~-~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 112 HLG-ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp ECS-SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred eCC-CCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 753 21 111233 11123468999999976555332 245666665420
Q ss_pred -eeEEEEeccCCCeEEEEEcCCCCeEEEEE
Q 011924 423 -YEKEQEIDFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 423 -~~~~~~~~~~~~i~~l~fspdg~~l~~~~ 451 (475)
.....+..-.....+++|+|+...|+++-
T Consensus 191 ~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 191 GARPEVYSLGHRNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred CCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence 01111111123477899999444455553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.22 Score=49.51 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=66.7
Q ss_pred CCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-----------Cce-EEEEecCCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 348 DFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNL-----------SES-VAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~-----------~~~-~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
.....+..+|||++++.++. +.+|.|+|++.. ... +..... .......+|.++|.-..+.--|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceE
Confidence 34456889999999998875 789999998731 111 223332 2355689999999555566679999
Q ss_pred EEEECCCC------e---eEEEEeccCCCeEEEEE------cCCCCeEEEE
Q 011924 415 HVYDVKSG------Y---EKEQEIDFFGEISGISF------SPDTESLFIG 450 (475)
Q Consensus 415 ~iwd~~~~------~---~~~~~~~~~~~i~~l~f------spdg~~l~~~ 450 (475)
.-|++... . .+..-..-.-.+-.+.- .|||++|++.
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 99998753 1 22222222233434433 6789999887
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.032 Score=48.70 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=79.8
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCce------EEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKT------IASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 381 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~------~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~ 381 (475)
.++|+|+|.+.++ .+|.++-.+..+... -..+- +... -.++.|.|+|.+.++ .||.|.-++--+.+.
T Consensus 45 ~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~ 119 (236)
T 1tl2_A 45 FLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDT 119 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTT
T ss_pred eEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCC
Confidence 8999999997777 677777766644221 11111 1111 467899999987777 568887776532111
Q ss_pred ------eEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee-----EEEEec--cCCCeEEEEEcCCCCeEE
Q 011924 382 ------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-----KEQEID--FFGEISGISFSPDTESLF 448 (475)
Q Consensus 382 ------~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~-----~~~~~~--~~~~i~~l~fspdg~~l~ 448 (475)
....-...-..+..|.|.|+|.+.++. ++.++-....++.. ...... ....-.-+.|+|+|...+
T Consensus 120 ~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~ 197 (236)
T 1tl2_A 120 DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG 197 (236)
T ss_dssp CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEE
Confidence 122222223467899999999877766 77654333222110 111212 222445577999998777
Q ss_pred EE
Q 011924 449 IG 450 (475)
Q Consensus 449 ~~ 450 (475)
+.
T Consensus 198 v~ 199 (236)
T 1tl2_A 198 VQ 199 (236)
T ss_dssp EE
T ss_pred Ee
Confidence 76
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.044 Score=52.76 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=90.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEeecC----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC---c------
Q 011924 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---E------ 381 (475)
Q Consensus 315 p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h----~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~---~------ 381 (475)
.+|..++++ .++.||..++..+...+.+... -..+..+..+|+|++||..+. .+|.|-.+-... .
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 455555554 3467888887755445555532 225788999999999998855 578888875211 0
Q ss_pred --eEEEEec------CCCceEEEEEccC---CCEEEEEcCCCeEEEEECCCCee-EEEEec---------cCCCeEEEEE
Q 011924 382 --SVAVLKG------NLGAIRSIRYTSD---GRYMATAEPADFVHVYDVKSGYE-KEQEID---------FFGEISGISF 440 (475)
Q Consensus 382 --~~~~~~~------~~~~v~~l~~spd---g~~la~~~~dg~i~iwd~~~~~~-~~~~~~---------~~~~i~~l~f 440 (475)
..+.+.- ...+|..+.|+|- |..|++-..|+.|++||+..... ...+.. ....|.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1223332 2467999999994 46899999999999999986321 111211 1146889999
Q ss_pred cCCCCeEEEEE
Q 011924 441 SPDTESLFIGV 451 (475)
Q Consensus 441 spdg~~l~~~~ 451 (475)
.++|-.|.+.+
T Consensus 188 g~~~lTLYvl~ 198 (452)
T 3pbp_A 188 SKDGLTLYCLN 198 (452)
T ss_dssp CTTSSCEEEEE
T ss_pred cCCCcEEEEEe
Confidence 99988888866
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.02 Score=54.71 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=78.7
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCc-eEEEee---cCCCCeEEEEEecC---CCEEEEEeC----C----CeEEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLC---GHLDFSFASAWHPN---GVTFATGNQ----D----KTCRIW 374 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~~~~l~---~h~~~v~~~~~sp~---g~~l~t~s~----d----g~v~iw 374 (475)
.++|.|+|++++ +...+.|++++ .+++ .+..+. ........++++|+ +..|+.+.. + ..|..|
T Consensus 33 ~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~ 110 (354)
T 3a9g_A 33 SIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRG 110 (354)
T ss_dssp EEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEE
T ss_pred EEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEE
Confidence 789999998555 45669999997 4554 222221 12356889999997 444544432 3 567777
Q ss_pred ECCCCC------ce-EEEEec-CCCceEEEEEccCCCEEEEEcC-------------CCeEEEEECCCCe--------eE
Q 011924 375 DLRNLS------ES-VAVLKG-NLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSGY--------EK 425 (475)
Q Consensus 375 d~~~~~------~~-~~~~~~-~~~~v~~l~~spdg~~la~~~~-------------dg~i~iwd~~~~~--------~~ 425 (475)
+..... +. +..+.. .......++|.|||++.++.+. .+.|.-++.. +. ..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~ 189 (354)
T 3a9g_A 111 RLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNS 189 (354)
T ss_dssp EECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTC
T ss_pred EECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCC
Confidence 765321 11 111221 1113467999999986665432 2456666643 22 01
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
..+..-.....+++|+|+...|+++-.
T Consensus 190 ~i~a~G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 190 PIWSYGHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred cEEEEccCCcceEEEeCCCCCEEEEec
Confidence 111112245678999994444555533
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.054 Score=53.54 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=58.5
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceE--EEeec------CCCCeEEEEEecC---CCEEEEEeC-----------
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI--ASLCG------HLDFSFASAWHPN---GVTFATGNQ----------- 367 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~--~~l~~------h~~~v~~~~~sp~---g~~l~t~s~----------- 367 (475)
.|+|.|+|+++++-...+.|++++..+++.. ..+.. .......++|+|+ +..|+.+..
T Consensus 31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~ 110 (454)
T 1cru_A 31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL 110 (454)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS
T ss_pred EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccc
Confidence 8899999997776544457888886556542 22221 2356779999995 445544432
Q ss_pred --CCeEEEEECCCCC----c--eEE-EEec-CCCceEEEEEccCCCEEEEEc
Q 011924 368 --DKTCRIWDLRNLS----E--SVA-VLKG-NLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 368 --dg~v~iwd~~~~~----~--~~~-~~~~-~~~~v~~l~~spdg~~la~~~ 409 (475)
...|.-|+..... . .+. .+.. .......|+|.|||++.++.+
T Consensus 111 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 111 PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345555543211 1 111 1221 123467999999998666543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.11 Score=48.41 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=57.2
Q ss_pred CCCcEEEEEeC------CCcEEEEECCCCceEEEeecC-CCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCce
Q 011924 315 PDGKLLIIVGD------NPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSES 382 (475)
Q Consensus 315 p~g~~l~~~~~------dg~i~iwd~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~~ 382 (475)
.++++++.|+. -..+.+||+.+.+-. .+..- .......+..-++++++.|+.++ .+.+||+.+ .+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~- 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK-ELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD-NK- 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT-TE-
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE-ECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC-Ce-
Confidence 46777788775 246889998876432 22211 11111111222677888887654 588899865 32
Q ss_pred EEEEec---CCCceEEEEEccCCCEEEEEcCC--------------CeEEEEECCCCeeE
Q 011924 383 VAVLKG---NLGAIRSIRYTSDGRYMATAEPA--------------DFVHVYDVKSGYEK 425 (475)
Q Consensus 383 ~~~~~~---~~~~v~~l~~spdg~~la~~~~d--------------g~i~iwd~~~~~~~ 425 (475)
-..+.. .......+. -++++++.|+.+ ..|.+||+.+.+-.
T Consensus 224 W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 222221 111122222 256777777653 24788898876433
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.32 Score=46.95 Aligned_cols=218 Identities=11% Similarity=0.076 Sum_probs=133.0
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEe----c
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNV----S 282 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~----s 282 (475)
...+|.+.|+..+........ .. .+.-+ +|..+. ++.- ...++.+||+++.+.+..+..+.+|.| +
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi-~A-----dsAIM--nP~~~i-iALr-ag~~lQiFnle~K~klks~~~~e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI-SA-----DSAIM--NPASKV-IALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC-CC-----SEEEE--CSSSSC-EEEE-ETTEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceeccc-cc-----ceeee--CCCCcE-EEEe-cCCeEEEEchHHhhhhcceecCCCceEEEecC
Confidence 344888899987664421111 11 12234 888875 4443 278999999999999888887666662 2
Q ss_pred cCCceEE---EEEEeecccc-eEEEEee--------eeeeEEECCCCcEEEEEeC-------CCcEEEEECCCCceEEEe
Q 011924 283 SSYCIIL---LCRLLNFMTE-KVIICLL--------CLQHSSQSPDGKLLIIVGD-------NPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 283 ~~~~~l~---~~~v~d~~~~-~~~~~~~--------~i~~~~~sp~g~~l~~~~~-------dg~i~iwd~~~~~~~~~l 343 (475)
+..-.+. .+..|++... .+.+... -|.....+++.++++..|- .|.+.+|..+. +.-+.+
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~i 194 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPI 194 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEE
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchh
Confidence 2222221 5678887542 2222222 3457778899999886542 36778998754 446678
Q ss_pred ecCCCCeEEEEEec---CCCEEEEEeCC---CeEEEEECCCC--Cc------eEEEEec---CCCceEEEEEccCCCEEE
Q 011924 344 CGHLDFSFASAWHP---NGVTFATGNQD---KTCRIWDLRNL--SE------SVAVLKG---NLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 344 ~~h~~~v~~~~~sp---~g~~l~t~s~d---g~v~iwd~~~~--~~------~~~~~~~---~~~~v~~l~~spdg~~la 406 (475)
+||...-..+...- ...+|+.+... +.++|-++... +. .+..+-. ...-..++..|+.-..+.
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 88865443333211 11355555443 68999998542 11 1111111 122334788888878888
Q ss_pred EEcCCCeEEEEECCCCeeEEEEeccCCCe
Q 011924 407 TAEPADFVHVYDVKSGYEKEQEIDFFGEI 435 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 435 (475)
.-+.-|.|++||+.++.++..-.-....|
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~i 303 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETI 303 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEecCceEEEEecccceeeeeecccCCce
Confidence 88999999999999999877655333333
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.021 Score=53.22 Aligned_cols=218 Identities=12% Similarity=0.037 Sum_probs=107.7
Q ss_pred EEEEcCcEEEEEecC----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC----C-----CeEE
Q 011924 194 TLAVKDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN----D-----CGVR 260 (475)
Q Consensus 194 ~l~~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~----d-----g~v~ 260 (475)
++..++.+++.||.. ..+.++|.......... ......... ++.. .++. +++.|+. + ..+.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~-~~~~---~~~~-lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-DLQVPRSGL-AGCV---VGGL-LYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECC-CCSSCCBSC-EEEE---ETTE-EEEECCEEEETTEEEECCCEE
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-CCCcccccc-eEEE---ECCE-EEEECCCcCCCCCCeecceEE
Confidence 444478888888853 36778887665433211 111111111 2222 1444 4666654 2 3577
Q ss_pred EEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-----CcEEEEECC
Q 011924 261 DFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-----PDGLLVDSM 335 (475)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----g~i~iwd~~ 335 (475)
+||+.+.+....-..+.+... . +++. -++++++.|+.+ ..+.+||+.
T Consensus 94 ~~d~~~~~W~~~~~~p~~r~~--------------------------~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 94 CYNPMTNQWSPCAPMSVPRNR--------------------------I-GVGV-IDGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBT--------------------------C-EEEE-ETTEEEEECCEETTEECCCEEEEETT
T ss_pred EECCCCCeEeECCCCCcCccc--------------------------c-EEEE-ECCEEEEEcCCCCCcccccEEEECCC
Confidence 888877654332221111110 0 1121 267777777643 468889987
Q ss_pred CCceEEEeec---CCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCE
Q 011924 336 TGKTIASLCG---HLDFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRY 404 (475)
Q Consensus 336 ~~~~~~~l~~---h~~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~ 404 (475)
+.+-. .+.. ......++.+ ++++++.|+.+ ..+.+||+.+ .+ -..+.. .......+.+ ++++
T Consensus 146 ~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i 218 (308)
T 1zgk_A 146 RDEWH-LVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER-NE-WRMITAMNTIRSGAGVCVL--HNCI 218 (308)
T ss_dssp TTEEE-ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCeEe-ECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC-Ce-EeeCCCCCCccccceEEEE--CCEE
Confidence 66532 2211 1111122222 67777777654 3588899865 22 222211 1111222333 6777
Q ss_pred EEEEcCC-----CeEEEEECCCCeeEEEEeccC--CCeEEEEEcCCCCeEEEEEecC
Q 011924 405 MATAEPA-----DFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 405 la~~~~d-----g~i~iwd~~~~~~~~~~~~~~--~~i~~l~fspdg~~l~~~~~D~ 454 (475)
++.|+.+ ..+.+||+.+..-........ .....+.+ +++.++.|+.++
T Consensus 219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 273 (308)
T 1zgk_A 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDG 273 (308)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence 7777654 469999998765332211111 11222222 667777777665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.13 Score=47.52 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=100.8
Q ss_pred EEEcCcEEEEEecC----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC------CeEEEEEC
Q 011924 195 LAVKDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFDM 264 (475)
Q Consensus 195 l~~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~iwd~ 264 (475)
...++.+++.||.+ ..+.++|+.+......... ........++.+ ++. +++.|+.+ ..+.+||.
T Consensus 52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~----~~~-iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP-PTPRDSLAACAA----EGK-IYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC-SSCCBSCEEEEE----TTE-EEEECCBBTTBSCCCCEEEEET
T ss_pred EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC-CccccceeEEEE----CCE-EEEECCCCCCCcEeeeEEEEeC
Confidence 34588888898865 6788888876654422221 111111122222 444 56666654 45888898
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------CCcEEEEECC
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------NPDGLLVDSM 335 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------dg~i~iwd~~ 335 (475)
.+.+....-..+.+... +.+...++++++.|+. -..+.+||+.
T Consensus 126 ~~~~W~~~~~~p~~r~~----------------------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 126 RTESWHTKPSMLTQRCS----------------------------HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTTEEEEECCCSSCCBS----------------------------CEEEEETTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCCceEeCCCCcCCcce----------------------------eEEEEECCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 87665433222211110 1112236677777753 3458899988
Q ss_pred CCceEEEeecCC-CC-eEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEe---cCCCceEEEEEccCCCEE
Q 011924 336 TGKTIASLCGHL-DF-SFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 336 ~~~~~~~l~~h~-~~-v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spdg~~l 405 (475)
+.+-. .+.... .. -.+++. -++++++.|+.+ ..+.+||+.+ .+ -..+. ........+.+ +++++
T Consensus 178 ~~~W~-~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~ 251 (306)
T 3ii7_A 178 TETWT-ELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKL-NE-WKMVSPMPWKGVTVKCAAV--GSIVY 251 (306)
T ss_dssp TTEEE-EECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTT-TE-EEECCCCSCCBSCCEEEEE--TTEEE
T ss_pred CCeEE-ECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCC-Cc-EEECCCCCCCccceeEEEE--CCEEE
Confidence 77532 232111 11 112222 266777777643 3588999865 22 22221 11112223333 67788
Q ss_pred EEEcCC-----CeEEEEECCCCee
Q 011924 406 ATAEPA-----DFVHVYDVKSGYE 424 (475)
Q Consensus 406 a~~~~d-----g~i~iwd~~~~~~ 424 (475)
+.|+.+ ..+.+||+.+.+-
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCeE
Confidence 888744 5689999987643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.059 Score=50.97 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=86.9
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceE--EEe----ecCCCCeEEEEEecC---CCEEEEE-e--CCCeEEEEECC
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI--ASL----CGHLDFSFASAWHPN---GVTFATG-N--QDKTCRIWDLR 377 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~--~~l----~~h~~~v~~~~~sp~---g~~l~t~-s--~dg~v~iwd~~ 377 (475)
.++|.|+|+++++--..|.|++++...++.. ..+ .........++++|+ ...|+.. + .+..|.-|...
T Consensus 36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~ 115 (347)
T 3das_A 36 GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD 115 (347)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence 8899999997776654899999987666542 222 123456889999995 3344432 2 34456656554
Q ss_pred CC-------Cce---EEEEec-CCCceEEEEEccCCCEEEEEcC-------------CCeEEEEECCCCe--------eE
Q 011924 378 NL-------SES---VAVLKG-NLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSGY--------EK 425 (475)
Q Consensus 378 ~~-------~~~---~~~~~~-~~~~v~~l~~spdg~~la~~~~-------------dg~i~iwd~~~~~--------~~ 425 (475)
.. ... +..+.. .......|+|.|||.+.++.+. .|.|.=++.. +. ..
T Consensus 116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~nPf~~~ 194 (347)
T 3das_A 116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGNPFPGS 194 (347)
T ss_dssp TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTCSSTTC
T ss_pred CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCCCCCCC
Confidence 31 011 112221 1123457999999986666432 2445444543 22 01
Q ss_pred EEEeccCCCeEEEEEcCCCCeEEEEEecCC-cceEEEEEeecceee
Q 011924 426 EQEIDFFGEISGISFSPDTESLFIGVWDRT-YGSLLEYGRCRNYSY 470 (475)
Q Consensus 426 ~~~~~~~~~i~~l~fspdg~~l~~~~~D~~-~~~ll~~~~~~~~~~ 470 (475)
..+..-.....+++|+|+|.. +++-.... .-++-....+.++.|
T Consensus 195 ~i~a~G~RNp~Gla~dp~G~L-~~~d~g~~~~deln~i~~G~nyGw 239 (347)
T 3das_A 195 PVYSYGHRNVQGLAWDDKQRL-FASEFGQDTWDELNAIKPGDNYGW 239 (347)
T ss_dssp CEEEBCCSBCCEEEECTTCCE-EEEECCSSSCEEEEEECTTCBCCT
T ss_pred eEEeeCCCCcceEEECCCCCE-EEEecCCCCCceeeEEcCCCEecC
Confidence 112212245779999998764 44432221 234444445555544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.057 Score=51.27 Aligned_cols=127 Identities=13% Similarity=-0.053 Sum_probs=58.5
Q ss_pred CcEEEEECCCCceEE--EeecCCCCe-EEEEEecCCCEEEEEeC------CCeEEEEECCCCCceEEEEec---CCCceE
Q 011924 327 PDGLLVDSMTGKTIA--SLCGHLDFS-FASAWHPNGVTFATGNQ------DKTCRIWDLRNLSESVAVLKG---NLGAIR 394 (475)
Q Consensus 327 g~i~iwd~~~~~~~~--~l~~h~~~v-~~~~~sp~g~~l~t~s~------dg~v~iwd~~~~~~~~~~~~~---~~~~v~ 394 (475)
..+.+||+.+.+-.. .+.. .... .+++. -++++++.|+. ...+.+||+......-..+.. ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~-~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPW-YGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSS-CCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCC-CCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 478899988765322 2221 1111 22332 25667776653 234677876211122222221 111111
Q ss_pred EEEEccCCCEEEEEcCC----------------------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 395 SIRYTSDGRYMATAEPA----------------------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 395 ~l~~spdg~~la~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
..+...++++++.|+.+ ..+.+||+.+..-...-..........+...+++.++.|+.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence 11233467777777632 25789998875433221111111112223347788888887
Q ss_pred cCC
Q 011924 453 DRT 455 (475)
Q Consensus 453 D~~ 455 (475)
+..
T Consensus 326 ~~~ 328 (357)
T 2uvk_A 326 TAG 328 (357)
T ss_dssp CGG
T ss_pred CCC
Confidence 654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.3 Score=45.24 Aligned_cols=196 Identities=11% Similarity=0.084 Sum_probs=106.9
Q ss_pred EEcCcEEEEEe--cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-------------CeEE
Q 011924 196 AVKDKLLVAGG--FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-------------CGVR 260 (475)
Q Consensus 196 ~~~~~~lvsg~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-------------g~v~ 260 (475)
+.+++.|+... .++.|...+.+..... ++... .+--+ +++|+++..+...+ ..|+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~---~l~~~-----~~~~i--~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy 91 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIH---KLSND-----TAMYI--NADKNYVYYVRNNNQKITSQTFFSYDRNSLC 91 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCE---EEEEE-----EEEEE--EECSSEEEEEEECC------CCSSCCSEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCE---EccCC-----ceeeE--EEcCCEEEEEECCCCcccccceeccCCCeEE
Confidence 35777777654 2566666665543332 22111 12222 78898867666554 3566
Q ss_pred EEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe----CCCcEEEEECCC
Q 011924 261 DFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----DNPDGLLVDSMT 336 (475)
Q Consensus 261 iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----~dg~i~iwd~~~ 336 (475)
..++...+... +. ..+ +..|+|+++.|+... ....|+..++.
T Consensus 92 ~i~~dg~~~~~-l~-~~~-------------------------------~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d- 137 (302)
T 3s25_A 92 RIKRNGHGSTV-LD-PDP-------------------------------CIYASLIGNYIYYLHYDTQTATSLYRIRID- 137 (302)
T ss_dssp EEETTSCCCEE-EE-CSC-------------------------------EEEEEEETTEEEEEEESSSSCEEEEEEETT-
T ss_pred EEeCCCCcceE-ee-cCC-------------------------------ccEEEEeCCEEEEEeecCCCCceEEEEECC-
Confidence 66665543221 11 111 336778888888775 34456666665
Q ss_pred CceEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC--Ce
Q 011924 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA--DF 413 (475)
Q Consensus 337 ~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d--g~ 413 (475)
|.....+..+.. .+|+|+++.|+-.+. ..+|.+-++.. +.. +.+.. +... ..++|++++|+..... ..
T Consensus 138 Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g-~~~-~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~ 208 (302)
T 3s25_A 138 GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS-QSE-ALFYD--CNCY-KPVVLDDTNVYYMDVNRDNA 208 (302)
T ss_dssp SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT-TEE-EEEEC--SCEE-EEEEEETTEEEEEEGGGTTE
T ss_pred CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC-CCE-EEEeC--CCcc-ceeeecCCEEEEEEcCCCcE
Confidence 444455554433 456788888886655 56788888754 333 33322 2222 3466999988876543 35
Q ss_pred EEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 414 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
|..-++..+. ...+.. ..+ ..|+|++.+|+-
T Consensus 209 I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~ 239 (302)
T 3s25_A 209 IVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFY 239 (302)
T ss_dssp EEEECSSSCC-CEECSC--SCE--EEEEEETTEEEE
T ss_pred EEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEE
Confidence 6666665443 333322 222 235666665554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0097 Score=56.12 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=103.8
Q ss_pred CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCeeeeeeeccc
Q 011924 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 199 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
+.+++.++.||.|...|..+++........ .....+. ..--..+.+..+++.. +.||.|..++..+|.....+..+.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 357888899999999998776655543332 1111111 1000011122334443 689999999998886555444332
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE-C----CCCcEEEEEeCCCcEEEEECCCCceEEEeecCC--CC-
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ-S----PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL--DF- 349 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~-s----p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~--~~- 349 (475)
.+..+|.. + .+ ...+ . -.+..+++++.++.+...|+++|+.+..+.... ..
T Consensus 88 lv~~SP~~---------~--~~----------~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~ 146 (339)
T 2be1_A 88 LVSTSPLH---------L--KT----------NIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYF 146 (339)
T ss_dssp HHTTCSEE---------E--EC----------C----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--
T ss_pred ceeccccc---------c--CC----------CceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccc
Confidence 22100000 0 00 0011 0 145678889999999999999999998886421 10
Q ss_pred ----eEEEEEe-----cCCCEEEEEeCCCeEEEEECCCCCce----EEEEecCCCc--e-EEEEEccCCCEEEEEcCCCe
Q 011924 350 ----SFASAWH-----PNGVTFATGNQDKTCRIWDLRNLSES----VAVLKGNLGA--I-RSIRYTSDGRYMATAEPADF 413 (475)
Q Consensus 350 ----v~~~~~s-----p~g~~l~t~s~dg~v~iwd~~~~~~~----~~~~~~~~~~--v-~~l~~spdg~~la~~~~dg~ 413 (475)
..|.... -.+..++.+..+..+.+.+ ++ ++. .......... + .+-..+.|+++ +.++.||.
T Consensus 147 ~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~s-G~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~ 223 (339)
T 2be1_A 147 GSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YD-GASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKS 223 (339)
T ss_dssp ------------------CCEEEEEEEEEECEECC-TT-SCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTE
T ss_pred cccccccccccccccccCCCeEEEecceEEEEEEC-CC-CCeEEEecccccccccccccccccccccCCcE-EEECCCCE
Confidence 1111111 1235677777666666665 23 220 1111111000 0 00001234666 34677888
Q ss_pred EEEEECCCCeeEE
Q 011924 414 VHVYDVKSGYEKE 426 (475)
Q Consensus 414 i~iwd~~~~~~~~ 426 (475)
|.-+|..+|..+-
T Consensus 224 v~A~d~~~G~~~W 236 (339)
T 2be1_A 224 LLASDLDFRIARW 236 (339)
T ss_dssp EEEECSTTCCEEE
T ss_pred EEEEECCCCcEEE
Confidence 8888888777654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.33 Score=45.00 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCCcEEEEEeC------CCcEEEEECCCCceEEEeecC-CC-CeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCc
Q 011924 315 PDGKLLIIVGD------NPDGLLVDSMTGKTIASLCGH-LD-FSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSE 381 (475)
Q Consensus 315 p~g~~l~~~~~------dg~i~iwd~~~~~~~~~l~~h-~~-~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~ 381 (475)
.++++++.|+. -..+.+||+.+.+-. .+... .. .-.+++. -++++++.|+.+ ..+.+||+.+ .+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKT-NK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTT-CC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCC-Ce
Confidence 46777777764 245899998876532 22211 11 1112222 266777777643 3577899865 22
Q ss_pred eEEEEec---CCCceEEEEEccCCCEEEEEcCC--------------CeEEEEECCCCeeE
Q 011924 382 SVAVLKG---NLGAIRSIRYTSDGRYMATAEPA--------------DFVHVYDVKSGYEK 425 (475)
Q Consensus 382 ~~~~~~~---~~~~v~~l~~spdg~~la~~~~d--------------g~i~iwd~~~~~~~ 425 (475)
-..+.. .......+ .-++++++.|+.+ ..+.+||+.+.+-.
T Consensus 234 -W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 234 -WEVMTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp -EEECCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred -EEECCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 122211 11111222 2356777777643 35888998876543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.19 Score=46.43 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=96.4
Q ss_pred EEcCcEEEEEec----C-----ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-----CeEEE
Q 011924 196 AVKDKLLVAGGF----Q-----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRD 261 (475)
Q Consensus 196 ~~~~~~lvsg~~----d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-----g~v~i 261 (475)
..++.+++.||. + ..+.++|+.+........ .........++.+ +++ +++.|+.+ ..+.+
T Consensus 68 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~----~~~-iyv~GG~~~~~~~~~~~~ 141 (308)
T 1zgk_A 68 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-MSVPRNRIGVGVI----DGH-IYAVGGSHGCIHHNSVER 141 (308)
T ss_dssp EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-CSSCCBTCEEEEE----TTE-EEEECCEETTEECCCEEE
T ss_pred EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC-CCcCccccEEEEE----CCE-EEEEcCCCCCcccccEEE
Confidence 348888888887 3 357778876654332111 1111111122222 444 46665432 35778
Q ss_pred EECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC-----CcEEEEECCC
Q 011924 262 FDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN-----PDGLLVDSMT 336 (475)
Q Consensus 262 wd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~ 336 (475)
||+.+.+....-..+.+...+ .++.+ ++++++.|+.+ ..+.+||+.+
T Consensus 142 yd~~~~~W~~~~~~p~~r~~~--------------------------~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 142 YEPERDEWHLVAPMLTRRIGV--------------------------GVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSC--------------------------EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred ECCCCCeEeECCCCCccccce--------------------------EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 888776544322222111100 02222 67777777654 4688999876
Q ss_pred CceEEEeec---CCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceEEEEec---CCCceEEEEEccCCCEE
Q 011924 337 GKTIASLCG---HLDFSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYM 405 (475)
Q Consensus 337 ~~~~~~l~~---h~~~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~spdg~~l 405 (475)
.+-. .+.. ......++.+ ++++++.|+.+ ..+.+||+.+ .+ -..+.. .......+. -+++++
T Consensus 194 ~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~i~ 266 (308)
T 1zgk_A 194 NEWR-MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHRRSALGITV--HQGRIY 266 (308)
T ss_dssp TEEE-ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred CeEe-eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCCccceEEEE--ECCEEE
Confidence 6432 2221 1111122222 67777777654 4589999865 32 222221 111112222 267777
Q ss_pred EEEcCC-----CeEEEEECCCCee
Q 011924 406 ATAEPA-----DFVHVYDVKSGYE 424 (475)
Q Consensus 406 a~~~~d-----g~i~iwd~~~~~~ 424 (475)
+.|+.+ ..|.+||+.+.+-
T Consensus 267 v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 267 VLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EECCBCSSCBCCEEEEEETTTTEE
T ss_pred EEcCcCCCcccceEEEEcCCCCEE
Confidence 777643 4688999887643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.54 Score=44.37 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=119.3
Q ss_pred EEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEe---eecCCCCceeEEEEEeCCC---CCeEEEEEe--CCCeEEE
Q 011924 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR---TTYDDNAITNAVEIYGSPS---GAVHFTASN--NDCGVRD 261 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~---~~~~~~~~v~~l~~~~s~~---g~~~l~s~s--~dg~v~i 261 (475)
-..|++ +|.++|+--..|.|++++........... +..........|++ +|+ +..++++-+ .+..|.-
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIAL--SPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSSEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEe--ccccccCCEEEEEEecCCCCEEEE
Confidence 346777 77777766558999988754333221111 11223445677888 885 333344322 3344554
Q ss_pred EECCCCe-----e---eeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-------
Q 011924 262 FDMGKYQ-----L---SKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD------- 325 (475)
Q Consensus 262 wd~~~~~-----~---~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~------- 325 (475)
|.+..+. . ...+. .+.. . .+ ....++|.|+|.+.++.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~-~---------------~H---------~g~~l~fgpDG~Lyvt~Gd~~~~~~~ 166 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKG-V---------------IH---------NGGRIAFGPDKMLYAGTGESGDTGLS 166 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCC-S---------------SC---------CCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCC-C---------------Cc---------cCccccCCCCCCEEEEECCCCCCccc
Confidence 5544311 0 00010 0000 0 00 0116899999988887653
Q ss_pred ------CCcEEEEECCCCc--------eEEEe-ecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC----------
Q 011924 326 ------NPDGLLVDSMTGK--------TIASL-CGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNL---------- 379 (475)
Q Consensus 326 ------dg~i~iwd~~~~~--------~~~~l-~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~---------- 379 (475)
.|.|.-++.. |+ ....+ .+|. ....++|+|+|.+.++=. .++.-.|--+...
T Consensus 167 qd~~~~~G~IlRi~~d-G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g 244 (347)
T 3das_A 167 QDRKSLGGKILRMTPD-GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEG 244 (347)
T ss_dssp TCTTCSTTCEEEECTT-SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCS
T ss_pred cCCCCCCCEEEEEeCC-CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccC
Confidence 3455544543 22 01112 2444 356799999887666543 2332222222211
Q ss_pred -------CceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCee----EEEEeccCCCeEEEEEcCCCCeEE
Q 011924 380 -------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSPDTESLF 448 (475)
Q Consensus 380 -------~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~fspdg~~l~ 448 (475)
..++..+..+..+...++|. +|..+...-..+.|....+..+.. ...+.+..+++.+++..|||..++
T Consensus 245 ~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv 323 (347)
T 3das_A 245 KGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWL 323 (347)
T ss_dssp SCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEE
T ss_pred CCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEE
Confidence 12344444433456788886 466665555556677667655432 112223457899999999997665
Q ss_pred EEE
Q 011924 449 IGV 451 (475)
Q Consensus 449 ~~~ 451 (475)
+..
T Consensus 324 ~td 326 (347)
T 3das_A 324 VTS 326 (347)
T ss_dssp EEC
T ss_pred EEc
Confidence 543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.27 Score=51.43 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=114.8
Q ss_pred EcCcEEEEEecC----ceEEEEeCCCCCceEEE-ee----ecCCCCceeEEEEEeCCCCCeEEEEEeCC------CeEEE
Q 011924 197 VKDKLLVAGGFQ----GELICKHLDRPGVSFCS-RT----TYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRD 261 (475)
Q Consensus 197 ~~~~~lvsg~~d----g~i~vw~~~~~~~~~~~-~~----~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------g~v~i 261 (475)
.++.+++.||.+ ..+.++|..+....... .. .......-.++.+ ..++. +++.|+.+ ..+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~-lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQ-LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTE-EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCE-EEEEcCCCCCCCccccEEE
Confidence 588888899864 46778888766544322 10 0111111122222 22555 46666543 34778
Q ss_pred EECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC--cEEEEECCCCce
Q 011924 262 FDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP--DGLLVDSMTGKT 339 (475)
Q Consensus 262 wd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg--~i~iwd~~~~~~ 339 (475)
||..+.+....-..+.+...+ +++.-.++++++.||.++ .+.+||+.+.+-
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h---------------------------~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRH---------------------------SACSLPDGNVLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSC---------------------------EEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred EeCCCCcEEECCCCCCCcccc---------------------------eEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence 888776543332212111100 333334888888887654 789999887653
Q ss_pred EEEeec------CCCCeEEEEEecC-CCEEEEEeC--C-----CeEEEEECCCCCc----eEEEEec----CCCceEEEE
Q 011924 340 IASLCG------HLDFSFASAWHPN-GVTFATGNQ--D-----KTCRIWDLRNLSE----SVAVLKG----NLGAIRSIR 397 (475)
Q Consensus 340 ~~~l~~------h~~~v~~~~~sp~-g~~l~t~s~--d-----g~v~iwd~~~~~~----~~~~~~~----~~~~v~~l~ 397 (475)
..+.. ......++.+..+ +++++.|+. + ..+.+||+.+..- .-..+.. ..... ++.
T Consensus 526 -~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~ 603 (695)
T 2zwa_A 526 -KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIK 603 (695)
T ss_dssp -EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEE
T ss_pred -EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEE
Confidence 22221 1112233555655 677777765 2 3588999876320 0122211 11111 233
Q ss_pred EccCCCEEEEEcC--------CCeEEEEECCCCeeEEEEeccCCC---------e-EEEEEcCCCCeEEEEEec
Q 011924 398 YTSDGRYMATAEP--------ADFVHVYDVKSGYEKEQEIDFFGE---------I-SGISFSPDTESLFIGVWD 453 (475)
Q Consensus 398 ~spdg~~la~~~~--------dg~i~iwd~~~~~~~~~~~~~~~~---------i-~~l~fspdg~~l~~~~~D 453 (475)
...++++++.|+. ...|.+||+.+..-.. . ..... + .++...++|+.++.|+..
T Consensus 604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~-~-~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS-I-PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE-C-CCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE-e-eccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 3334777777774 3469999998875441 1 11110 0 234444566777777654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.16 Score=47.17 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=66.0
Q ss_pred CCcEEEEEeCC-------CcEEEEECCCCceEEEeecCCCC-e-EEEEEecCCCEEEEEeC------CCeEEEEECCCCC
Q 011924 316 DGKLLIIVGDN-------PDGLLVDSMTGKTIASLCGHLDF-S-FASAWHPNGVTFATGNQ------DKTCRIWDLRNLS 380 (475)
Q Consensus 316 ~g~~l~~~~~d-------g~i~iwd~~~~~~~~~l~~h~~~-v-~~~~~sp~g~~l~t~s~------dg~v~iwd~~~~~ 380 (475)
++++++.|+.+ ..+.+||+.+.+-. .+..-..+ . .+++. .++++++.|+. -..+.+||..+ .
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~-~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKK-G 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTT-T
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCC-C
Confidence 67788888753 34778898766532 22211111 1 11222 46777777754 23588999865 3
Q ss_pred ceEEEEec---CCCceEEEEEccCCCEEEEEcCC-----CeEEEEECCCCeeEEEEecc--CCCeEEEEEcCCCCeEEEE
Q 011924 381 ESVAVLKG---NLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDF--FGEISGISFSPDTESLFIG 450 (475)
Q Consensus 381 ~~~~~~~~---~~~~v~~l~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~l~fspdg~~l~~~ 450 (475)
+ -..+.. .......+. -++++++.|+.+ ..+.+||+.+..-....... ......+. -+++.++.|
T Consensus 186 ~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G 260 (318)
T 2woz_A 186 D-WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIG 260 (318)
T ss_dssp E-EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred E-EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEEC
Confidence 2 222221 111112222 256777777643 35889998876432211111 11112222 356677777
Q ss_pred EecC
Q 011924 451 VWDR 454 (475)
Q Consensus 451 ~~D~ 454 (475)
+.+.
T Consensus 261 G~~~ 264 (318)
T 2woz_A 261 GFAM 264 (318)
T ss_dssp CBCC
T ss_pred Ceec
Confidence 7653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.061 Score=51.23 Aligned_cols=142 Identities=9% Similarity=0.005 Sum_probs=77.5
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-------cCCCCeEEEEEecC---CCEEEEE-eC-------CCeE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-------GHLDFSFASAWHPN---GVTFATG-NQ-------DKTC 371 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-------~h~~~v~~~~~sp~---g~~l~t~-s~-------dg~v 371 (475)
.++|.|+|+.|+++...|.|++++. .++....+. ........++++|+ +..|+.+ +. ...|
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 8899999993444556789999985 343211111 12345689999995 4444444 22 2356
Q ss_pred EEEECCCCC-c--eEE-EEec------CCCceEEEEEccCCCEEEEEcC-------------CCeEEEEECCCCe-----
Q 011924 372 RIWDLRNLS-E--SVA-VLKG------NLGAIRSIRYTSDGRYMATAEP-------------ADFVHVYDVKSGY----- 423 (475)
Q Consensus 372 ~iwd~~~~~-~--~~~-~~~~------~~~~v~~l~~spdg~~la~~~~-------------dg~i~iwd~~~~~----- 423 (475)
..|++.... . ... .+.. .......++|.|||.+.++.+. .|.|.-++....-
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np 180 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP 180 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence 666664311 1 111 1211 1112357999999965554332 2467777754320
Q ss_pred -------eEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 424 -------EKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 424 -------~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
....+..-.....+++|+|....|+++-.
T Consensus 181 f~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 181 FIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 11122222245789999995445666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.1 Score=57.75 Aligned_cols=202 Identities=16% Similarity=0.104 Sum_probs=114.2
Q ss_pred cCCCeEEEecCCeEEEEecCCCC-ceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe-------cCc
Q 011924 140 TSKHDVYLMSHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-------FQG 209 (475)
Q Consensus 140 ~~~~~v~~~~~~~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~-------~dg 209 (475)
.+.+.|-.+.+..|+||+..... ..++++.. ..+.+.+|..... +.++++..| -.|
T Consensus 114 is~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~--------------~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 114 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRH--------------SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred cCCCeeEEEcCCeEEEeccCCCCccHHHHhcc--------------hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 45667888999999999875321 12222221 1223467777777 666666443 348
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC---CCeEEEEECCCC-eeeeeee-ccccEEeccC
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---DCGVRDFDMGKY-QLSKHFR-FPWPVNVSSS 284 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~---dg~v~iwd~~~~-~~~~~~~-~~~~v~~s~~ 284 (475)
.+.+++++.... +...+|.+.-..+.+.-.+....+++.+.. .+.++|.++... .....|. ..-.+.|.|.
T Consensus 180 ~mQLyS~er~~s----Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~ 255 (1630)
T 1xi4_A 180 AMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (1630)
T ss_pred eeeeeecccccc----hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc
Confidence 888998875432 334455444333333112222223333322 267888877432 1111111 0111111111
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
.. ..- .| ++.+|+.-..+...+.-|.++++|+.||.++..-+-...+|+..+-++...-++.
T Consensus 256 ~~-----------~Df------pv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~ 317 (1630)
T 1xi4_A 256 AQ-----------NDF------PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG 317 (1630)
T ss_pred cc-----------cCc------ce-EEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEE
Confidence 00 000 01 7888998888888999999999999999987655555667777766665555666
Q ss_pred EeCCCeEEEEECC
Q 011924 365 GNQDKTCRIWDLR 377 (475)
Q Consensus 365 ~s~dg~v~iwd~~ 377 (475)
.+..|.|.--.+.
T Consensus 318 vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 318 VNRKGQVLSVCVE 330 (1630)
T ss_pred EcCCceEEEEEEc
Confidence 6677776666554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.34 Score=45.75 Aligned_cols=109 Identities=15% Similarity=-0.021 Sum_probs=53.8
Q ss_pred CCcEEEEEeC------CCcEEEEEC--CCCceEEEeecC---CCCeEEEEEecCCCEEEEEeCC----------------
Q 011924 316 DGKLLIIVGD------NPDGLLVDS--MTGKTIASLCGH---LDFSFASAWHPNGVTFATGNQD---------------- 368 (475)
Q Consensus 316 ~g~~l~~~~~------dg~i~iwd~--~~~~~~~~l~~h---~~~v~~~~~sp~g~~l~t~s~d---------------- 368 (475)
++++++.|+. ...+.+||+ .+.+ ...+... .......+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~ 278 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAH 278 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceecc
Confidence 5677777653 345777887 3332 2222211 1111212233467777777632
Q ss_pred ------CeEEEEECCCC-CceEEEEecCCCceEEEEEccCCCEEEEEcCCC------eEEEEECCCCeeEEE
Q 011924 369 ------KTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD------FVHVYDVKSGYEKEQ 427 (475)
Q Consensus 369 ------g~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg------~i~iwd~~~~~~~~~ 427 (475)
..+.+||+.+. ...+..+........+ ...++++++.|+.++ .|.++++++++....
T Consensus 279 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 279 EGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp TTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred ccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 24778998642 2233333322222222 334678888887542 466678877665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.7 Score=51.40 Aligned_cols=210 Identities=12% Similarity=0.093 Sum_probs=121.4
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEe----c
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNV----S 282 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~----s 282 (475)
...+|.|.|+..+..... +-.... +.-+ +|..+. ++.- ...++.||++++.+.+..+..+.+|.| +
T Consensus 46 ~~~~vvIidl~~~~~~~r-rpi~Ad-----sAIM--nP~~~i-iALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIR-RPISAD-----SAIM--NPASKV-IALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCccc-ccccch-----hhcc--CCCcce-EEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecC
Confidence 344788889887553311 111111 1223 787764 4443 478999999999888888877767763 3
Q ss_pred cCCceEE---EEEEeecccce-EEEE--------eeeeeeEEECCCCcEEEEEe-------CCCcEEEEECCCCceEEEe
Q 011924 283 SSYCIIL---LCRLLNFMTEK-VIIC--------LLCLQHSSQSPDGKLLIIVG-------DNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 283 ~~~~~l~---~~~v~d~~~~~-~~~~--------~~~i~~~~~sp~g~~l~~~~-------~dg~i~iwd~~~~~~~~~l 343 (475)
+..-.+. .+-.|++.... +.+. ..-|..-..+++.++++..| -.|.+.+|....+ ..+.+
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~i 194 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI 194 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhh
Confidence 3322221 56788875321 1110 01344667788899887654 2477888887533 34556
Q ss_pred ecCCCCeEEEEEe--c-CCCEEEEEeC---CCeEEEEECCCC--Cce------EEEEecC---CCceEEEEEccCCCEEE
Q 011924 344 CGHLDFSFASAWH--P-NGVTFATGNQ---DKTCRIWDLRNL--SES------VAVLKGN---LGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 344 ~~h~~~v~~~~~s--p-~g~~l~t~s~---dg~v~iwd~~~~--~~~------~~~~~~~---~~~v~~l~~spdg~~la 406 (475)
.||...-..+... | ...+++.+.. .+.++|-++... +.+ +...-.. ..-..++..|+.-.++.
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 7776544333321 1 2234443332 268888888542 111 1111111 12233677777777888
Q ss_pred EEcCCCeEEEEECCCCeeEEE
Q 011924 407 TAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~~ 427 (475)
.-+.-|.|++||+.||.++..
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEecCceEEEEecccchhhhh
Confidence 888899999999999987644
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.6 Score=40.73 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=56.3
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCC-ce------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC-c
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTG-KT------IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-E 381 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~------~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~-~ 381 (475)
++.|.|+|.+.++ .||.|+-++..+. .. ...-.+-=..+..+.+.|+|.+.+.. |+.+.-+..-... .
T Consensus 92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~ 167 (236)
T 1tl2_A 92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQD 167 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTC
T ss_pred EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCc
Confidence 7889999998888 5588887775321 11 11111111357889999999877777 7764322211100 0
Q ss_pred ----eEEEEe-cCCCceEEEEEccCCCEEEEEcCCC
Q 011924 382 ----SVAVLK-GNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 382 ----~~~~~~-~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
....+. ..-..-+.+.|+|+|.+.++. ++
T Consensus 168 ~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g 201 (236)
T 1tl2_A 168 NWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG 201 (236)
T ss_dssp CHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred ccccccceeccCCcceEEEEEECCCCcEEEEe--CC
Confidence 111111 223345567799999877766 55
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.39 E-value=4.3 Score=44.91 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=95.6
Q ss_pred eeEEEEEEc--------CcEEEEEec-CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 190 TQVSTLAVK--------DKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 190 ~~v~~l~~~--------~~~lvsg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
..|+|+++. +.+++.|.. +++++++++........ .... ......++.+... .+..+|..|-.||.+.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-~~L~-~~~~p~si~l~~~-~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK-EMLG-GEIIPRSILMTTF-ESSHYLLCALGDGALF 630 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE-EECC-SSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE-EECC-CCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence 368899882 479999997 99999999986544322 2222 2234455555322 3445577888899876
Q ss_pred EEEC--CCCeeeee---eeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCC-cEEEEEeCCCcEEEEEC
Q 011924 261 DFDM--GKYQLSKH---FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDG-KLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 261 iwd~--~~~~~~~~---~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~dg~i~iwd~ 334 (475)
-+.+ .++++... +-...++. -..+...| ..+++.+. ....++-.
T Consensus 631 ~~~~d~~tg~l~d~r~~~LG~~pv~-----------------------------L~~~~~~~~~~V~a~s~-rp~liy~~ 680 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTLGTQPTV-----------------------------LRTFRSLSTTNVFACSD-RPTVIYSS 680 (1158)
T ss_dssp EEEECTTTCCEEEEEEEECCSSCCE-----------------------------EEEEESSSCEEEEEESS-SCEEEEES
T ss_pred EEEEcCCCCccccceeEEcCCCceE-----------------------------EEEEeeCCceeEEEECC-CCEEEEEc
Confidence 5554 34544322 11233444 11222223 23333433 33444443
Q ss_pred CCCceEE-EeecCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCCc-eEEEEecCCCceEEEEEccCCCEEEEE
Q 011924 335 MTGKTIA-SLCGHLDFSFASAWHPN--GVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 335 ~~~~~~~-~l~~h~~~v~~~~~sp~--g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~spdg~~la~~ 408 (475)
+ ++... .+. ...--....|+.. ..-++..+ ++.++|.-+....+ .++.+.- ...++.++++|..+.++.+
T Consensus 681 ~-~~l~~s~l~-~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 681 N-HKLVFSNVN-LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp S-SSEEEEEBS-SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEE
T ss_pred C-CceEEeccC-hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEE
Confidence 3 33221 121 1122234456442 23455443 45699988754333 3333333 3467888998877765543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.44 E-value=2.3 Score=41.77 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=20.6
Q ss_pred ceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 234 ~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
.-+.++| .|+|+. +++-...+.|++++...++
T Consensus 28 ~P~~~a~--~pdG~l-~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 28 KPHALLW--GPDNQI-WLTERATGKILRVNPESGS 59 (454)
T ss_dssp SEEEEEE--CTTSCE-EEEETTTCEEEEECTTTCC
T ss_pred CceEEEE--cCCCcE-EEEEcCCCEEEEEECCCCc
Confidence 3467777 999973 5554333468888765444
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.04 E-value=5.4 Score=39.83 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=39.3
Q ss_pred ceEEEEEccCCCEEEEEcC-CCeEEEEECCCC------ee------EEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 392 AIRSIRYTSDGRYMATAEP-ADFVHVYDVKSG------YE------KEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~-dg~i~iwd~~~~------~~------~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
....+.++|||+++++++. +.++.|+|+++- +. +.......-.....+|.++| ..++.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTt 394 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTT 394 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEee
Confidence 4568899999998887664 789999998742 11 11112233467889999999 44444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.63 E-value=8.1 Score=40.47 Aligned_cols=216 Identities=11% Similarity=0.032 Sum_probs=122.7
Q ss_pred eeEEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 190 ~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..|.++.. ....|-.|+.+| +.+++..+.... .........|.++.. .+|. +..++.+ .|..++..+++
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~---~~~~~~~~~i~~i~~---~~g~--lWigt~~-Gl~~~~~~~~~ 132 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYE---QPETDFPTDVRTMAL---QGDT--LWLGALN-GLYTYQLQSRK 132 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEEC---CCSCCCCSCEEEEEE---ETTE--EEEEETT-EEEEEETTTCC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEE---CcccCCCceEEEEEe---cCCc--EEEEcCC-cceeEeCCCCe
Confidence 45888777 556777777665 778887653211 111111234555543 3453 4445455 68888987655
Q ss_pred eeeeee-----ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe
Q 011924 269 LSKHFR-----FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 269 ~~~~~~-----~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l 343 (475)
...... ....|. ++....+|.+.+ ++.. -+..++..+++.. .+
T Consensus 133 ~~~~~~~~~~l~~~~i~-----------------------------~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~ 180 (758)
T 3ott_A 133 LTSFDTRRNGLPNNTIY-----------------------------SIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GI 180 (758)
T ss_dssp EEEECHHHHCCSCSCEE-----------------------------EEEECTTCCEEE-EETT-EEEEEETTTTEEE-EE
T ss_pred EEEeccCCCCcCCCeEE-----------------------------EEEEcCCCCEEE-EeCC-CHhhCccCCCceE-Ee
Confidence 432211 112344 777777887665 4444 4788887766533 22
Q ss_pred ecC------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEE
Q 011924 344 CGH------LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417 (475)
Q Consensus 344 ~~h------~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iw 417 (475)
... ...|.++...+++..|..|.. +-+..+|... .+...........|.++...++|.+.+.. .. -+.++
T Consensus 181 ~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~ 256 (758)
T 3ott_A 181 PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST-GQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVY 256 (758)
T ss_dssp CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT-TEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEE
T ss_pred cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC-CeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEE
Confidence 211 224888888877765555554 4578888754 33221111123468888888888765544 44 48889
Q ss_pred ECCCCeeEEEEec--------cCCCeEEEEEcCCCCeEEEEEec
Q 011924 418 DVKSGYEKEQEID--------FFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 418 d~~~~~~~~~~~~--------~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+..++... .+.. ....|.++....+|. |.+|...
T Consensus 257 ~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~ 298 (758)
T 3ott_A 257 HNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDY 298 (758)
T ss_dssp CCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESS
T ss_pred ecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCC
Confidence 97765432 2211 123588888887775 5555543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=93.54 E-value=11 Score=41.68 Aligned_cols=226 Identities=11% Similarity=0.082 Sum_probs=121.1
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCC-----CeEEEEEeC-CCeEEEEEC
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG-----AVHFTASNN-DCGVRDFDM 264 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g-----~~~l~s~s~-dg~v~iwd~ 264 (475)
.|...+.++..++.+. .+.+.++.++....... ....-...|.|+++ .|.+ ..+++.|.+ |++|+|+++
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~--~~~~l~~evscl~i--~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQI--SHTEMEHEVACLDI--TPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEE--EEEECSSCEEEEEC--CCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeee--cccCCCCceEEEEe--ecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 5666677666666664 67888888775332211 11223456899988 5432 235788886 999999999
Q ss_pred CCCeeeeeeeccc--cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEEC--CCCceE
Q 011924 265 GKYQLSKHFRFPW--PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDS--MTGKTI 340 (475)
Q Consensus 265 ~~~~~~~~~~~~~--~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~ 340 (475)
...+.+.....+. ... .+.-+.+ ....+|.+|-.||.+.-+.+ .+|...
T Consensus 590 ~~l~~~~~~~L~~~~~p~--------------------------si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~ 642 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPR--------------------------SILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLS 642 (1158)
T ss_dssp TTCCEEEEEECCSSCCEE--------------------------EEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred CCCCeEEEEECCCCCCCc--------------------------EEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence 8766554333211 111 0001223 23456788888998765544 455543
Q ss_pred EE---eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCce-EEEEEccCC--CEEEEEcCCCeE
Q 011924 341 AS---LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI-RSIRYTSDG--RYMATAEPADFV 414 (475)
Q Consensus 341 ~~---l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v-~~l~~spdg--~~la~~~~dg~i 414 (475)
.. .-| ..++.=..+...+..-+-+..+....++--. ++.... .-....+ ....|+... .-++..+ ++.+
T Consensus 643 d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~--~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~L 717 (1158)
T 3ei3_A 643 DRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN--HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTL 717 (1158)
T ss_dssp EEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS--SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCE
T ss_pred cceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC--CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCce
Confidence 22 223 2344333343344333333344555555543 232211 1122223 234454322 2344444 3459
Q ss_pred EEEECCCCee-EEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 415 HVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 415 ~iwd~~~~~~-~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
+|..+.+... ..........+..++++|..+.++++..+
T Consensus 718 rI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 718 TIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp EEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred EEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEe
Confidence 9988754322 22223345678999999998888777654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.15 E-value=9.6 Score=39.89 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=134.2
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCC
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLD 217 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~ 217 (475)
.......|++.....+..++..+.+... +.. .....|.++...+..|..|+.+ .|..++..
T Consensus 69 ~~d~~g~lWigT~~Gl~~yd~~~~~f~~---------~~~---------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~ 129 (758)
T 3ott_A 69 VIIDNTYLYMGTDNGILVYNYRADRYEQ---------PET---------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQ 129 (758)
T ss_dssp EEETTTEEEEEETTEEEEEETTTTEECC---------CSC---------CCCSCEEEEEEETTEEEEEETT-EEEEEETT
T ss_pred EEcCCCcEEEEeCCCeEEEeCCCCEEEC---------ccc---------CCCceEEEEEecCCcEEEEcCC-cceeEeCC
Confidence 3445567777777778888876543211 000 0112466665545566666666 57778876
Q ss_pred CCCceEEEeee-cCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-------ccEEeccCCceEE
Q 011924 218 RPGVSFCSRTT-YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP-------WPVNVSSSYCIIL 289 (475)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~~v~~s~~~~~l~ 289 (475)
........... .-....|.++.. .++|.. . .++. +.|..++..+++... +..+ ..|.
T Consensus 130 ~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~l-W-igt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~--------- 194 (758)
T 3ott_A 130 SRKLTSFDTRRNGLPNNTIYSIIR--TKDNQI-Y-VGTY-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVN--------- 194 (758)
T ss_dssp TCCEEEECHHHHCCSCSCEEEEEE--CTTCCE-E-EEET-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEE---------
T ss_pred CCeEEEeccCCCCcCCCeEEEEEE--cCCCCE-E-EEeC-CCHhhCccCCCceEE-ecCCCccccccceeE---------
Confidence 54322110000 112234666666 677763 3 3444 457788887665432 2211 1244
Q ss_pred EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 290 ~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
++...+++..|.+|+. +-+..++..+++...........|.++...++|.+.+. +..
T Consensus 195 --------------------~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~- 251 (758)
T 3ott_A 195 --------------------SLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN- 251 (758)
T ss_dssp --------------------EEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-
T ss_pred --------------------EEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-
Confidence 7777777765555654 45888998776543211112345888888878775554 444
Q ss_pred eEEEEECCCCCceEEEEec--------CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec-----cCCCeE
Q 011924 370 TCRIWDLRNLSESVAVLKG--------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-----FFGEIS 436 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~--------~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~ 436 (475)
-+.+++... .. ...+.. ....|.++....+|.+-+ |+..| +.++............. ....|.
T Consensus 252 Gl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 327 (758)
T 3ott_A 252 GLYVYHNDT-TP-LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFY 327 (758)
T ss_dssp EEEEECCTT-SC-CEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEE
T ss_pred ceeEEecCC-Cc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEE
Confidence 478888754 22 222221 123688998888887444 44456 55543322111111100 123577
Q ss_pred EEEEcCCCCeEEEEE
Q 011924 437 GISFSPDTESLFIGV 451 (475)
Q Consensus 437 ~l~fspdg~~l~~~~ 451 (475)
++.-.++|.. .+|.
T Consensus 328 ~i~~D~~g~l-WiGt 341 (758)
T 3ott_A 328 SLFRDSKGFY-WFGG 341 (758)
T ss_dssp EEEECTTCCE-EEEE
T ss_pred EEEEcCCCCE-EEee
Confidence 7777777654 4444
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=2.1 Score=44.63 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=61.4
Q ss_pred CCcEEEEEeCC------CcEEEEECCCCceEEEeecC--CCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCceEEE
Q 011924 316 DGKLLIIVGDN------PDGLLVDSMTGKTIASLCGH--LDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSESVAV 385 (475)
Q Consensus 316 ~g~~l~~~~~d------g~i~iwd~~~~~~~~~l~~h--~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~~~~~ 385 (475)
++++++.||.+ ..+.+||+.+.+-. .+..- ...-.+++.-.++++++.|+.++ .+.+||..+ .. -..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~-~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t-~~-W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWS-MIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE-EI-FKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEE-ECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT-TE-EEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEE-ECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC-Cc-eEE
Confidence 78888888743 35788998775422 22211 11112233324788888887654 689999865 32 222
Q ss_pred Eec------CCCceEEEEEccC-CCEEEEEcC--C-----CeEEEEECCCCe
Q 011924 386 LKG------NLGAIRSIRYTSD-GRYMATAEP--A-----DFVHVYDVKSGY 423 (475)
Q Consensus 386 ~~~------~~~~v~~l~~spd-g~~la~~~~--d-----g~i~iwd~~~~~ 423 (475)
+.. ......++.+..+ +++++.|+. + +.+.+||+.+..
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 221 1122234556655 677777765 2 469999998775
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.48 E-value=7.3 Score=38.22 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCC--CceEEEEec---------CCCceEEEEEccC----CCEEEEEcC
Q 011924 347 LDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNL--SESVAVLKG---------NLGAIRSIRYTSD----GRYMATAEP 410 (475)
Q Consensus 347 ~~~v~~~~~sp~g~-~l~t~s~dg~v~iwd~~~~--~~~~~~~~~---------~~~~v~~l~~spd----g~~la~~~~ 410 (475)
-...+.++|.|+|. .|+++.+.|.|++++.... ..++..+.. .......|+|+|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34578899999986 4555668899999975321 122232221 1346788999996 443333221
Q ss_pred --C----------CeEEEEECCCC----------eeEEEEec--cCCCeEEEEEcCCCCeEEEEEecC
Q 011924 411 --A----------DFVHVYDVKSG----------YEKEQEID--FFGEISGISFSPDTESLFIGVWDR 454 (475)
Q Consensus 411 --d----------g~i~iwd~~~~----------~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~ 454 (475)
+ ..|.-|.+..+ +.+..+.. .......|+|.|||. |+++..|+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCC
Confidence 1 13444655421 22222221 112467899999994 55555554
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.21 E-value=13 Score=35.30 Aligned_cols=137 Identities=7% Similarity=-0.100 Sum_probs=68.4
Q ss_pred eEEECC-C-CcEEEEEeCCCcEEEEECCCCceEEEeec-------------------CCCCeEEEEEec-CCCEEEEEeC
Q 011924 310 HSSQSP-D-GKLLIIVGDNPDGLLVDSMTGKTIASLCG-------------------HLDFSFASAWHP-NGVTFATGNQ 367 (475)
Q Consensus 310 ~~~~sp-~-g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-------------------h~~~v~~~~~sp-~g~~l~t~s~ 367 (475)
++++.| + ...+.+++..+.|...+ ..|+....+.. ....+.++.++| +...|+.+..
T Consensus 119 ~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 119 WLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp EEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 788887 2 45566665555554442 33444333321 123578899998 3444555544
Q ss_pred CCeEEEEECCCCCceEEEEecC-------------CCceEEEEEccC-CCEEEEEcCCCeEEEEECCCCeeEEEEec-cC
Q 011924 368 DKTCRIWDLRNLSESVAVLKGN-------------LGAIRSIRYTSD-GRYMATAEPADFVHVYDVKSGYEKEQEID-FF 432 (475)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~-------------~~~v~~l~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~-~~ 432 (475)
.+.|... ...++.-..+... ...+.+++++|. ...|.++...+ |...+- .+..-..+.. ..
T Consensus 198 ~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~ 273 (394)
T 3b7f_A 198 SGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMP 273 (394)
T ss_dssp TBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSC
T ss_pred CCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCC
Confidence 4433333 2223322222110 124889999985 35666666544 555442 2322222211 11
Q ss_pred ----CCeEEEEEcC-CCCeEEEEE
Q 011924 433 ----GEISGISFSP-DTESLFIGV 451 (475)
Q Consensus 433 ----~~i~~l~fsp-dg~~l~~~~ 451 (475)
..+..++++| +...|+++.
T Consensus 274 ~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 274 REVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp TTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCccceEEEEECCCCCCEEEEEe
Confidence 2356788887 345566654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.58 E-value=0.82 Score=42.92 Aligned_cols=111 Identities=11% Similarity=-0.049 Sum_probs=69.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEeecC-CCCeEEEEEe--cCCCEEEEE--eCCCeEEEEECCCCCceEEEEec----
Q 011924 318 KLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWH--PNGVTFATG--NQDKTCRIWDLRNLSESVAVLKG---- 388 (475)
Q Consensus 318 ~~l~~~~~dg~i~iwd~~~~~~~~~l~~h-~~~v~~~~~s--p~g~~l~t~--s~dg~v~iwd~~~~~~~~~~~~~---- 388 (475)
.++++++.||.|+-+|..+|+...+++.. ..++....-. +.+..++.+ +.||.|..++..+ +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 47888999999999999999999888754 1222221100 112234433 5799999999865 432222221
Q ss_pred CCCceEE---EEE-c----cCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 389 NLGAIRS---IRY-T----SDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 389 ~~~~v~~---l~~-s----pdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
...++.. ... . ..+..+++|+.++.+...|+++|+.+.++.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1112211 001 0 134578899999999999999999887765
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=20 Score=33.93 Aligned_cols=170 Identities=8% Similarity=0.042 Sum_probs=97.5
Q ss_pred eEEEEECCCC--eeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC---CC----CcEEEEEe-CCC
Q 011924 258 GVRDFDMGKY--QLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS---PD----GKLLIIVG-DNP 327 (475)
Q Consensus 258 ~v~iwd~~~~--~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s---p~----g~~l~~~~-~dg 327 (475)
.|.+||+.+. ++++.+..+..+.- .+..+. .+++. |. +.++.++. ..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~--------------------di~VD~~~~~~~c~~~~aYItD~~~~ 181 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFG--------------------GFAVDVANPKGDCSETFVYITNFLRG 181 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC--CGGGEE--------------------EEEEEESCTTTTSCSEEEEEEETTTT
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc--cCCccc--------------------eEEEecccCCCCCCccEEEEEcCCCC
Confidence 4667888888 88888775543321 011111 44444 22 33443333 356
Q ss_pred cEEEEECCCCceEEEeec----C--------------CCCeEEEEEecC----CCEEEEEeCCCeEEEEECC-----C--
Q 011924 328 DGLLVDSMTGKTIASLCG----H--------------LDFSFASAWHPN----GVTFATGNQDKTCRIWDLR-----N-- 378 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~----h--------------~~~v~~~~~sp~----g~~l~t~s~dg~v~iwd~~-----~-- 378 (475)
.|.++|+.+++..+.+.. . ...+..++++|+ ++.|+-..-.+ -++|-+. +
T Consensus 182 gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~ 260 (381)
T 3q6k_A 182 ALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKG 260 (381)
T ss_dssp EEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTT
T ss_pred cEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcc
Confidence 799999998877665521 0 246888999997 77777776554 2344332 1
Q ss_pred CCceEEEEecC--CCceEEEEEc-cCCCEEEEEcCCCeEEEEECCC-Ce---eEEEE-ec-cCCCeEEEEEcCCCCeEEE
Q 011924 379 LSESVAVLKGN--LGAIRSIRYT-SDGRYMATAEPADFVHVYDVKS-GY---EKEQE-ID-FFGEISGISFSPDTESLFI 449 (475)
Q Consensus 379 ~~~~~~~~~~~--~~~v~~l~~s-pdg~~la~~~~dg~i~iwd~~~-~~---~~~~~-~~-~~~~i~~l~fspdg~~l~~ 449 (475)
....++.+... .+.-..+++. .+|.++++--..+.|..|+..+ .. ....+ .. ....+.++.+.++|...+.
T Consensus 261 ~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 261 GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred hhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 11223333221 1233456775 6787777777788999999876 22 11222 22 2235788888888864444
Q ss_pred E
Q 011924 450 G 450 (475)
Q Consensus 450 ~ 450 (475)
+
T Consensus 341 s 341 (381)
T 3q6k_A 341 S 341 (381)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=85.20 E-value=3 Score=42.26 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=45.1
Q ss_pred ceEEEEEccCCCEEEEEcC------------CCeEEEEECCCCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEe
Q 011924 392 AIRSIRYTSDGRYMATAEP------------ADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~ 452 (475)
..-.|+|+|.|+++++-.. ++.+.+.+..+++..+.+... ..++++++|+||++.|++...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 3457999999996665432 235777787778766555554 468999999999999999854
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=83.46 E-value=25 Score=31.63 Aligned_cols=213 Identities=15% Similarity=0.045 Sum_probs=104.1
Q ss_pred EecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeC
Q 011924 138 WATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 138 ~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~ 216 (475)
.+...+.+.+. ++.++.|-.......- + |. .....|..++. ....++. . +|.|+.|-.
T Consensus 30 a~G~~h~~~l~-~G~v~~wG~n~~Gqlg-------~------p~-----~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 30 AGGYFHGLALK-GGKVLGWGANLNGQLT-------M------PA-----ATQSGVDAIAAGNYHSLAL-K-DGEVIAWGG 88 (282)
T ss_dssp EECSSEEEEEE-TTEEEEEECCSSSTTS-------C------CG-----GGGSCCCEEEECSSEEEEE-E-TTEEEEEEC
T ss_pred EeCCCeEEEEE-CCEEEEEeCCCCCCCC-------C------Cc-----cCCCCEEEEEeCCCEEEEE-E-CCEEEEeeC
Confidence 44445555555 8999999743321110 0 00 11235777888 4444444 4 999999986
Q ss_pred CCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-CeeeeeeeccccEEeccCCceEEEEEEee
Q 011924 217 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRFPWPVNVSSSYCIILLCRLLN 295 (475)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~v~~s~~~~~l~~~~v~d 295 (475)
...+..- +...-...|..|+. .. . ..++-. +|.|..|-... +++-........+.
T Consensus 89 n~~Gqlg---~P~~~~~~v~~ia~--G~--~-hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~--------------- 144 (282)
T 3qhy_B 89 NEDGQTT---VPAEARSGVDAIAA--GA--W-ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVT--------------- 144 (282)
T ss_dssp CTTSTTC---CCGGGSSSEEEEEE--ET--T-EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEE---------------
T ss_pred CCCCCCC---CCcccCCCeEEEEC--cC--C-EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeE---------------
Confidence 6543221 00111234555554 22 2 233344 99999997654 22211111222333
Q ss_pred cccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 011924 296 FMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 374 (475)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iw 374 (475)
.++.... ..++.. +|.++.|-... ++.- .-..-...|..++.... ..++. .+|.|..|
T Consensus 145 --------------~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~w 203 (282)
T 3qhy_B 145 --------------ALDGGVY--TALAVK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAW 203 (282)
T ss_dssp --------------EEEECSS--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEE
T ss_pred --------------EEEcccC--EEEEEE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCC-EEEEE--ECCeEEEE
Confidence 4443332 222233 68888886542 2211 00111245666665443 23333 58999999
Q ss_pred ECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 375 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 375 d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
=....++.-... .....|..++...... ++.. +|.|..|=..
T Consensus 204 G~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 204 GDNRYKQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAWGSS 245 (282)
T ss_dssp ECCTTSTTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEESTT
T ss_pred ECCCCCCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEecCC
Confidence 764433321111 1123566666554332 3333 8888888643
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=80.95 E-value=7.7 Score=38.91 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=45.4
Q ss_pred ceEEEEEccCCCEEEEEcC------------CCeEEEEECCCCeeEEEEecc-CCCeEEEEEcCCCCeEEEEEec
Q 011924 392 AIRSIRYTSDGRYMATAEP------------ADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~fspdg~~l~~~~~D 453 (475)
....|.|+++|.+.++... .+.|..++..+++....+... ..++++++||||++.|+++...
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 4568999999987663321 236777787778765555433 4679999999999999999754
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.53 E-value=39 Score=31.89 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=97.1
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCC--------c-eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEE
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPG--------V-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~--------~-~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~ 260 (475)
..|..++......++-..+|.|+.|-....+ . .....+..-....+..+++ +..... .++-..+|.|.
T Consensus 53 ~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i--~~G~~h-~~al~~~G~v~ 129 (389)
T 3kci_A 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAV--NSGGKH-CLALSSEGEVY 129 (389)
T ss_dssp TCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEE--CTTCSE-EEEEETTSCEE
T ss_pred CceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEE--CcCCCe-EEEEcCCCCEE
Confidence 3566777766666666789999999654321 1 1111121222233455666 555444 55556899999
Q ss_pred EEECCCCeeee-----eeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC
Q 011924 261 DFDMGKYQLSK-----HFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM 335 (475)
Q Consensus 261 iwd~~~~~~~~-----~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~ 335 (475)
.|-......+. ....+..+. ...+. . -+.++......++...+|.|+.|=..
T Consensus 130 ~wG~n~~GqLG~g~~~~~~~p~~v~---------------~l~~~------~--i~~va~G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 130 SWGEAEDGKLGHGNRSPCDRPRVIE---------------SLRGI------E--VVDVAAGGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECG---------------GGTTS------C--EEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEeCCCCCcCCCCCCccCcCCeEec---------------ccCCC------e--EEEEEeCcCeEEEEeCCCeEEEeCCC
Confidence 99764311110 000000000 00000 0 11233334455556678888888643
Q ss_pred C-Cc----------eEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc----------eEEEEec-CCCc
Q 011924 336 T-GK----------TIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE----------SVAVLKG-NLGA 392 (475)
Q Consensus 336 ~-~~----------~~~~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~----------~~~~~~~-~~~~ 392 (475)
. |+ ....+.. ....|..++........+.-..+|.|..|-....++ ....+.. ....
T Consensus 187 ~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~ 266 (389)
T 3kci_A 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG 266 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSC
T ss_pred CCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCc
Confidence 1 11 1111111 123466666544334566667889999996432111 1111111 1123
Q ss_pred eEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 393 IRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
|..++... .+.++-..+|.|..|=.
T Consensus 267 v~~v~~G~--~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 267 VVKVECGS--QFSVALTKSGAVYTWGK 291 (389)
T ss_dssp EEEEEEET--TEEEEEETTSCEEEEEC
T ss_pred EEEEeCCC--CEEEEEeCCCeEEEEeC
Confidence 55555443 34444456777777753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 475 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.7 bits (161), Expect = 9e-13
Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 10/176 (5%)
Query: 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVI 302
+ G + + SN D VR + + + R V S+ ++ T
Sbjct: 152 NQDGTLIASCSN-DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210
Query: 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 362
G L+ + + D TG + +L GH ++ +H G
Sbjct: 211 KKS--------GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262
Query: 363 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418
+ DKT R+WD +N + L + + S+ + Y+ T V V++
Sbjct: 263 LSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.7 bits (148), Expect = 4e-11
Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 21/169 (12%)
Query: 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH---------- 356
++ + DG L+ ++ + T + A L H +W
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204
Query: 357 ----------PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 406
G +G++DKT ++WD+ + L G+ +R + + S G+++
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFIL 263
Query: 407 TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+ + V+D K+ + ++ + F + G D+T
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (116), Expect = 4e-07
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 395
+L GH +HP + ++D T ++WD + LKG+ +++
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQD 64
Query: 396 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
I + G+ +A+ + ++D + +S +S P+ + + D+T
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 456 Y 456
Sbjct: 125 I 125
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 2e-12
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 1/126 (0%)
Query: 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI-WDLRNLSESVAVLKGN 389
L D G + GH A + PNG FATG+ D TCR+ +
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 390 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449
+ I S+ ++ GR + +V+D +S + + D ++
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 450 GVWDRT 455
G WD
Sbjct: 330 GSWDSF 335
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 1e-09
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS--AWHPNGVTFATGNQDKTC 371
P+G D+ L D + + + + ++ +G G D C
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 372 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418
+WD ++ VL G+ + + T DG +AT F+ +++
Sbjct: 295 NVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 355 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 414
P+ F +G D + ++WD+R G+ I +I + +G AT
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 415 HV--YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+ + I+ +SFS L G D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.2 bits (87), Expect = 0.002
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR 397
+T +L GHL +A W + + +QD IWD + V + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCA 104
Query: 398 YTSDGRYMATAEPADFVHVYDVKS 421
Y G Y+A + +Y++K+
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKT 128
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 6e-09
Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 23/143 (16%)
Query: 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVI 302
+ G + S D V+ +++ + P C + + +
Sbjct: 263 TRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGT----------CEVTYIGHKDFV 311
Query: 303 ICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH------LDFSFASAWH 356
+ + + + + + ++ + L D +G + L GH + + S+
Sbjct: 312 LSV------ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365
Query: 357 PNGVTFATGNQDKTCRIWDLRNL 379
P FATG+ D RIW + +
Sbjct: 366 PEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.7 bits (122), Expect = 8e-08
Identities = 37/250 (14%), Positives = 75/250 (30%), Gaps = 37/250 (14%)
Query: 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVN-------------VSSSYCIIL 289
SP G T + + + + + S + +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 290 LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL------ 343
+ + I + DGK + + + DS TG + L
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 344 -CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-----------ESVAVLKGNLG 391
GH D ++ + +G + +G+ D++ ++W+L+N + G+
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 392 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK------EQEIDFFGEISGISFSPDTE 445
+ S+ T + Y+ + V +D KSG + +G S P+
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 446 SLFIGVWDRT 455
G D
Sbjct: 370 VFATGSGDCK 379
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.9 bits (125), Expect = 4e-08
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412
AW+ + A + I++ V LK + G + + + D + T
Sbjct: 14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73
Query: 413 FVHVYD 418
+V+
Sbjct: 74 NAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
+ D + I +N + + + K + L H W P+ T D+
Sbjct: 16 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75
Query: 372 RIWD 375
+W
Sbjct: 76 YVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 0.002
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 392 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF----GEISGISFSPDTESL 447
I + D +A VH+Y+ K ++ G+++G+ ++PD+ +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 448 FIGVWDRT 455
DR
Sbjct: 67 VTCGTDRN 74
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403
H + + G F + +D W S+ K + ++ S + D +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKES-SSVLSCDISVDDK 319
Query: 404 YMATAEPADFVHVYDV 419
Y+ T VY+V
Sbjct: 320 YIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
+ GK + G + + G +I + + TG+ DK +
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332
Query: 374 WDL 376
+++
Sbjct: 333 YEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
+ DG++ V PD L+ + + I +L H + A TG
Sbjct: 18 TADGQMQP-VPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTG-GKGCV 74
Query: 372 RIWDLRNLSE----SVAVLKGNLGAIRSIRYTSDGRYMATA 408
++WD+ + S IRS + DG +
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 395 SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 454
S+++ G++ + + ++ + G + + S D + + G D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 455 T 455
Sbjct: 329 K 329
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 3e-07
Identities = 31/251 (12%), Positives = 67/251 (26%), Gaps = 12/251 (4%)
Query: 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 258
D +A + + + + + A E + + + +
Sbjct: 92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM-LAWARDGSKLY 150
Query: 259 VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK 318
D+ S +L + ++ + D
Sbjct: 151 GLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210
Query: 319 LLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377
L +D TG+ + F F++A +P +DL
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLE 268
Query: 378 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--- 434
+ V + S+ ++DG + + YD ++ EK+ ++D G
Sbjct: 269 KNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDLPGNASM 325
Query: 435 --ISGISFSPD 443
S F+ D
Sbjct: 326 SLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 7/116 (6%), Positives = 27/116 (23%), Gaps = 3/116 (2%)
Query: 340 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399
+ + + DL ++ ++ S
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249
Query: 400 SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+ + +D++ + + ++ S D ++++G
Sbjct: 250 PAKTRAFG--AYNVLESFDLEKN-ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD 302
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 10/126 (7%), Positives = 35/126 (27%), Gaps = 13/126 (10%)
Query: 314 SPDGKLLIIVGDNPDGLL-------VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366
P + + + VD + I L + +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426
+ +D++ + + +R ++D + + + ++ + ++ ++
Sbjct: 296 EKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
Query: 427 Q-EIDF 431
E D
Sbjct: 351 TVETDK 356
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 10/127 (7%)
Query: 335 MTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKTCRIWDLRNLSESVAVLKG 388
+ + P +T G ++ I + L+
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274
Query: 389 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 448
++ + Y A + YDVK+ + + ++ + S D +++
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVM 330
Query: 449 IGVWDRT 455
+ D
Sbjct: 331 VRKDDGK 337
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (116), Expect = 6e-07
Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 19/172 (11%)
Query: 314 SPDGKLLIIVGDNPDGL--LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
D + L V G L+D T + L S +G +D
Sbjct: 27 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKV 85
Query: 372 RIWDLRNLSE----SVAVLKGNLGAIRSIRYTSDGRY-MATAEPADFVHVYDVKSGYEK- 425
+ DL + + S + +Y +A A + D ++ K
Sbjct: 86 NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145
Query: 426 ----------EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCRN 467
EQE ++ I S + V + L++Y N
Sbjct: 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 197
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 8e-07
Identities = 16/88 (18%), Positives = 27/88 (30%)
Query: 337 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI 396
G GH A + +G T + + + WD+ + + I I
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 397 RYTSDGRYMATAEPADFVHVYDVKSGYE 424
+ TS G + V SG +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVD 89
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (85), Expect = 0.002
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 8/123 (6%)
Query: 254 NNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313
+ + P+ V + V ++ ++
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 373
S D +++ ++ + I H S S N T + QD +
Sbjct: 243 SLDNSVIV--------WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
Query: 374 WDL 376
W++
Sbjct: 295 WNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.9 bits (83), Expect = 0.004
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDG 402
H +W P+ V ATG+ D + +W++ S+ + + + + + +
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280
Query: 403 RYMATAEPADFVHVYDV 419
+ +A + ++V
Sbjct: 281 TTIVSAGQDSNIKFWNV 297
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 34/220 (15%), Positives = 65/220 (29%), Gaps = 8/220 (3%)
Query: 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEK 300
GS + + + V + ++ + T
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP-ETETCL 170
Query: 301 VIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360
+ + S DG ++ + + D TG I +L GH S S
Sbjct: 171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDN 228
Query: 361 TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420
+GN D T +IWD++ + N + ++ T+ V ++D+K
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Query: 421 SG-----YEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+G + G + I S +G + T
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 392
K+ L GH D + G +G+ D T ++W + + L G+ G
Sbjct: 2 RRGELKSPKVLKGHDD-HVITCLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGG 59
Query: 393 IRSIRYTSDGRYM 405
+ S + +
Sbjct: 60 VWSSQMRDNIIIS 72
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 16/227 (7%), Positives = 50/227 (22%), Gaps = 12/227 (5%)
Query: 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLC 291
+ V +P+ ++ + F +K R
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 292 RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG---HLD 348
L + + + ++ + + + +
Sbjct: 157 SLYVAGPDIYKMDV-------KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 209
Query: 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 408
+ + + AT + DL+ + +
Sbjct: 210 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY- 268
Query: 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 455
+ + YD+K + + + ++F + L++G
Sbjct: 269 GVLNRLAKYDLKQR-KLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 2/113 (1%)
Query: 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369
+ D + L VD TGKT L + +
Sbjct: 213 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272
Query: 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422
+DL+ A + + G + + + V++ +
Sbjct: 273 RLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.4 bits (98), Expect = 8e-05
Identities = 10/107 (9%), Positives = 28/107 (26%), Gaps = 7/107 (6%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPAD 412
A N + D+ + + + + + + D R
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 413 FVHVYDVKSGYEK------EQEIDFFGEISGISFSPDTESLFIGVWD 453
++ D+ + + + + SPD + ++ V
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 2e-05
Identities = 8/76 (10%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 344 CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 403
A+ ATG+ D I+ ++ + + L + + ++ + +
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271
Query: 404 YMATAEPADFVHVYDV 419
+ ++ + ++V
Sbjct: 272 -LVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (87), Expect = 0.001
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 336 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 395
+ + ++ GH A +P +G+ D W + + + + I S
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVS 51
Query: 396 IRYTSDGRYM 405
+ + Y
Sbjct: 52 LDNSKAQEYS 61
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.9 bits (83), Expect = 0.003
Identities = 10/120 (8%), Positives = 24/120 (20%), Gaps = 2/120 (1%)
Query: 257 CGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD 316
++ S + + + +
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226
Query: 317 GKLLIIVGDNPDGLLVD-SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
L+ + + + K I +L H D W + D + W+
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 5/71 (7%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 338 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GNLGAIRS 395
+ + D+ P+ + D + ++ +++V +L+ +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 396 IRYTSDGRYMA 406
+ +
Sbjct: 62 CNFIDNTDLQI 72
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 7/113 (6%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDS-----MTGKTIASLCGHLDFSFASAWHPNGVTFATGN 366
S DG++ + D+ S + + + P T
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270
Query: 367 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419
D W+L+ + K N ++ + A D
Sbjct: 271 SDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLATSDDTFKTNAA 321
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 312 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
+P G + V + H + + P+G A+G+
Sbjct: 24 GNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82
Query: 372 RIW 374
RIW
Sbjct: 83 RIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 343 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 402
H F W P+G A+ + DKT +IW++ L + G + +
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293
Query: 403 RYMATAEPADFVHVYD 418
+ + + F++ +
Sbjct: 294 QALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.003
Identities = 6/71 (8%), Positives = 18/71 (25%), Gaps = 1/71 (1%)
Query: 307 CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS-AWHPNGVTFATG 365
+ + SPDG + + + + T K ++ +
Sbjct: 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299
Query: 366 NQDKTCRIWDL 376
+ + +
Sbjct: 300 SANGFINFVNP 310
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 8/143 (5%)
Query: 314 SPDGKLLIIVGDNPDG--LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 371
D L V G LVD + K + + S +G +D
Sbjct: 27 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARI 85
Query: 372 RIWDLRNLS----ESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPADFVHVYDVKSGYEKE 426
+ DL + + S + RY A A + D ++ K+
Sbjct: 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ 145
Query: 427 QEIDFFGEISGISFSPDTESLFI 449
+ ++ P+ I
Sbjct: 146 IVSTRGMTVDTQTYHPEPRVAAI 168
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.002
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 354 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 413
+ T + D + V V+ A+ R ++ GRY+
Sbjct: 27 DLDLPNLFSVTLRDAGQIALVDGDSKKI-VKVIDTG-YAVHISRMSASGRYLLVIGRDAR 84
Query: 414 VHVYDVKSG-YEKEQEIDFFGEISGI----SFSPDTESLFIGVWDRTY 456
+ + D+ + K EI E + + G +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 132
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.6 bits (86), Expect = 0.003
Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 6/149 (4%)
Query: 314 SPDGKLLIIVGDNPDGLLVDSMTGK-----TIASLCGHLDFSFASAWHPNGVTFATGNQD 368
S G+ L+++G + ++D + I + G
Sbjct: 70 SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129
Query: 369 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQ 427
E ++ + + Y + R A + + +VK +
Sbjct: 130 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189
Query: 428 EIDFFGEISGISFSPDTESLFIGVWDRTY 456
+ ++ L G WD ++
Sbjct: 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSH 218
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.001
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 20/128 (15%)
Query: 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 391
V + + + H + + +++ +G T + D R WD++ E + L +
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCD 332
Query: 392 AIR----SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 447
I + G +A V+DVK + ESL
Sbjct: 333 DIEIEEDILAVDEHGDSLAEP------GVFDVK---------FLKKGWRSGMGADLNESL 377
Query: 448 FIGVWDRT 455
DR+
Sbjct: 378 CCVCLDRS 385
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.002
Identities = 18/207 (8%), Positives = 53/207 (25%), Gaps = 2/207 (0%)
Query: 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272
++ GV + + + + GS + + ++
Sbjct: 148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 207
Query: 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV 332
S+ + E + ++ +
Sbjct: 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRG 267
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 392
+ H + S + ++ + +G+ + I++LR+ A + +
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ 326
Query: 393 IRSIRYTSDGRYMATAEPAD-FVHVYD 418
I S+ + A + F+ + D
Sbjct: 327 IWSVNFKGKTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.004
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 8/125 (6%)
Query: 298 TEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 357
VI CL + +I D+ + DS+ K + L GH +A +
Sbjct: 12 MTSVITCL--------QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 358 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 417
G+ + + V + I + +Y+ T + +HV+
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
Query: 418 DVKSG 422
+
Sbjct: 124 KLPKE 128
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 6/164 (3%)
Query: 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272
H V + ++++ + + T + + G+ +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV-S 193
Query: 273 FRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLV 332
+ + C L L I + S + DGK I V D L
Sbjct: 194 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK--IKVWDLVAALDP 251
Query: 333 DSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 375
+ G + +L H F + + + D T IWD
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.004
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 353 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 398
+ +G +D T +IWD L E +L G+ G++ ++Y
Sbjct: 19 YCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY 63
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.004
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 16/132 (12%)
Query: 333 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 392
++ T + + +L GH + +G+ D T R+WD+ + +
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGAC---LRVLEGHE 218
Query: 393 IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPD 443
D + + + + V+D+ + + G + + F
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278
Query: 444 TESLFIGVWDRT 455
+ D T
Sbjct: 279 Q--IVSSSHDDT 288
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.68 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.65 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.37 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.25 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.24 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.18 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.16 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.15 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.04 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.03 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.03 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.01 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.01 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.98 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.84 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.84 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.84 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.79 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.74 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.7 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.68 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.65 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.48 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.35 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.17 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.04 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.98 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.93 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.7 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.62 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.52 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.52 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.46 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.43 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.38 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.24 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.0 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.86 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.15 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.14 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.9 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.75 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.17 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.05 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.89 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.87 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.67 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.62 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.22 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.35 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.02 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 87.93 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-34 Score=273.23 Aligned_cols=280 Identities=15% Similarity=0.165 Sum_probs=232.2
Q ss_pred eeeccc-ceeEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEE
Q 011924 128 ILHFQL-RNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 204 (475)
Q Consensus 128 ~~h~~l-r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvs 204 (475)
+.|-.. ..+.|+++...|++.+++.|.+|+..+......+... ....+...|.+++| ++++|++
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~-------------~~~~h~~~I~~v~~s~dg~~l~s 114 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQL-------------DCLNRDNYIRSCKLLPDGCTLIV 114 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEE-------------ECSCTTSBEEEEEECTTSSEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEe-------------eecCCCCcEEEEEEcCCCCEEEE
Confidence 345544 3344788888898888999999997654432111100 01113347999999 8899999
Q ss_pred EecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEecc
Q 011924 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSS 283 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~ 283 (475)
|+.||.|++|++....... ......|...+..+.+ +|++.. +++++.|+.|++|++.++++..... +..++.
T Consensus 115 ~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~-l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~--- 187 (337)
T d1gxra_ 115 GGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAI--SPDSKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS--- 187 (337)
T ss_dssp EESSSEEEEEECCCC--EE-EEEEECSSSCEEEEEE--CTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEE---
T ss_pred eeccccccccccccccccc-cccccccccccccccc--cccccc-cccccccccccccccccccccccccccccccc---
Confidence 9999999999997655433 3455678888999998 999986 8899999999999999988877666 677888
Q ss_pred CCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEE
Q 011924 284 SYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 363 (475)
Q Consensus 284 ~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 363 (475)
+++|+|++..+++++.++.+++||+++++.+..+. |...|.+++|+|++++|+
T Consensus 188 --------------------------~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~ 240 (337)
T d1gxra_ 188 --------------------------CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp --------------------------EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEE
T ss_pred --------------------------cccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccc
Confidence 99999999999999999999999999999887775 889999999999999999
Q ss_pred EEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 364 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 364 t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
+|+.|+.+++||++. .. ......|...|++++|+|+|++|++++.|+.|++||+.+++.+... .|.+.|.+++|+|+
T Consensus 241 ~~~~d~~i~i~d~~~-~~-~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d 317 (337)
T d1gxra_ 241 VGMESSNVEVLHVNK-PD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp EEETTSCEEEEETTS-SC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred eeccccccccccccc-cc-cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCC
Confidence 999999999999976 33 3456778899999999999999999999999999999999887664 47889999999999
Q ss_pred CCeEEEEEecCCcc
Q 011924 444 TESLFIGVWDRTYG 457 (475)
Q Consensus 444 g~~l~~~~~D~~~~ 457 (475)
+++|++|+.|+++.
T Consensus 318 ~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 318 DKYIVTGSGDKKAT 331 (337)
T ss_dssp SCEEEEEETTSCEE
T ss_pred CCEEEEEeCCCeEE
Confidence 99999999999875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1e-33 Score=269.04 Aligned_cols=268 Identities=12% Similarity=0.113 Sum_probs=222.9
Q ss_pred eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEE
Q 011924 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (475)
Q Consensus 136 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~v 213 (475)
+-+.+....+++..+.++.+|+..+.....++. + +...|++++| ++++|++|+.||+|++
T Consensus 23 ~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~--~----------------H~~~v~~~~~sp~g~~latg~~dg~i~i 84 (311)
T d1nr0a1 23 LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT--E----------------HSHQTTVAKTSPSGYYCASGDVHGNVRI 84 (311)
T ss_dssp CEECTTSSEEEEEETTEEEEEETTCSSCCEEEC--C----------------CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEcCCCCEEEEEeCCEEEEEECCCCceeEEEc--C----------------CCCCEEEEEEeCCCCeEeccccCceEee
Confidence 345566777888888899999987766655432 2 2247999999 8999999999999999
Q ss_pred EeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC--CCeEEEEECCCCeeeeeee-ccccEEeccCCceEEE
Q 011924 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILL 290 (475)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~ 290 (475)
|++........ ..+..|.+.|.+++| +|+++. +++++. +..+++|++++++....+. |...|.
T Consensus 85 wd~~~~~~~~~-~~~~~~~~~v~~v~~--s~d~~~-l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~---------- 150 (311)
T d1nr0a1 85 WDTTQTTHILK-TTIPVFSGPVKDISW--DSESKR-IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN---------- 150 (311)
T ss_dssp EESSSTTCCEE-EEEECSSSCEEEEEE--CTTSCE-EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE----------
T ss_pred eeeeccccccc-cccccccCccccccc--cccccc-cccccccccccccccccccccccccccccccccc----------
Confidence 99987765432 445678899999999 999987 666654 5669999999988887776 677888
Q ss_pred EEEeecccceEEEEeeeeeeEEECCCCcE-EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 011924 291 CRLLNFMTEKVIICLLCLQHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 369 (475)
Q Consensus 291 ~~v~d~~~~~~~~~~~~i~~~~~sp~g~~-l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg 369 (475)
+++|+|++++ |++|+.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|+
T Consensus 151 -------------------~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~ 211 (311)
T d1nr0a1 151 -------------------SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211 (311)
T ss_dssp -------------------EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------------------cccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence 9999999885 78899999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEEEe-------cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC---CeEEEE
Q 011924 370 TCRIWDLRNLSESVAVLK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG---EISGIS 439 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~-------~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~ 439 (475)
.|++||++. +..+..+. +|.+.|++++|+|+|++|++|+.|+.|+|||+++++++..+..+.. .+.++.
T Consensus 212 ~v~~~d~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~ 290 (311)
T d1nr0a1 212 TIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290 (311)
T ss_dssp CEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred ccccccccc-ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE
Confidence 999999987 55555553 4678999999999999999999999999999999998888876543 344455
Q ss_pred EcCCCCeEEEEEecCCcc
Q 011924 440 FSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 440 fspdg~~l~~~~~D~~~~ 457 (475)
| ++.+|++++.||.+.
T Consensus 291 ~--~~~~l~s~s~dG~i~ 306 (311)
T d1nr0a1 291 W--TKQALVSISANGFIN 306 (311)
T ss_dssp E--CSSCEEEEETTCCEE
T ss_pred e--cCCEEEEEECCCEEE
Confidence 5 566899999998774
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-32 Score=268.72 Aligned_cols=294 Identities=16% Similarity=0.187 Sum_probs=231.3
Q ss_pred eecccce-eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 129 LHFQLRN-LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 129 ~h~~lr~-l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
.|....+ +-|++++..|...+++.|++|+..+++....+....................+...|.+++| ++++|++|
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 4555444 44788888888888999999999887765444322111111111111122234557999999 88999999
Q ss_pred ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCC
Q 011924 206 GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSY 285 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~ 285 (475)
+.||.|++|+....... ....+|...|.++.+ ++++.. +++++.++.+++||+.+..............
T Consensus 140 ~~dg~v~i~~~~~~~~~---~~~~~h~~~v~~~~~--~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----- 208 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIV---MILQGHEQDIYSLDY--FPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT----- 208 (388)
T ss_dssp ETTSCEEEEETTTTEEE---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEE-----
T ss_pred ccccccccccccccccc---ccccccccccccccc--cccccc-ccccccceeeeeeeccccccccccccccccc-----
Confidence 99999999998865544 456678899999999 999886 8888999999999999988877777555555
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEECCCCceEEEe-------ecCCCCeEEEEEec
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASL-------CGHLDFSFASAWHP 357 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~l-------~~h~~~v~~~~~sp 357 (475)
++.++| ++++|++++.|+.|++|+++++..+..+ .+|...|.+++|+|
T Consensus 209 ------------------------~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 264 (388)
T d1erja_ 209 ------------------------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264 (388)
T ss_dssp ------------------------EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred ------------------------cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence 556655 8999999999999999999998877665 35889999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC-----------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 358 NGVTFATGNQDKTCRIWDLRNLS-----------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 358 ~g~~l~t~s~dg~v~iwd~~~~~-----------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
++++|++++.|++|++||++... ........|...|++++|+|+|++|++|+.||.|+|||+.+++++.
T Consensus 265 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 344 (388)
T d1erja_ 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344 (388)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 99999999999999999997532 2345556788899999999999999999999999999999999999
Q ss_pred EEeccCCCeEEEEE------cCCCCeEEEEEecCCcc
Q 011924 427 QEIDFFGEISGISF------SPDTESLFIGVWDRTYG 457 (475)
Q Consensus 427 ~~~~~~~~i~~l~f------spdg~~l~~~~~D~~~~ 457 (475)
.+.+|.+.|.++++ +|++.+|++|+.|+++.
T Consensus 345 ~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~ 381 (388)
T d1erja_ 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381 (388)
T ss_dssp EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred EEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEE
Confidence 99999999999875 67899999999998874
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.4e-33 Score=260.03 Aligned_cols=263 Identities=14% Similarity=0.234 Sum_probs=232.3
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
|..+|++|+| ++++|++|+.||.|++|++.+.... ..+..|...|.++++ +|++.. +++++.++.+.+|+..
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~---~~~~~h~~~V~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISF--DHSGKL-LASCSADMTIKLWDFQ 89 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSCCCEEETT
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE---EEEeCCCCcEEEEee--eccccc-cccccccccccccccc
Confidence 3458999999 7899999999999999999876655 456688999999999 999986 8888899999999998
Q ss_pred CCeeeeeee-c---cccEEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 266 KYQLSKHFR-F---PWPVNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 266 ~~~~~~~~~-~---~~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
..+....+. + ...+.+++++..++ .+++|+..+++...... .+.+++|+|++++|++++.|+.|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~ 169 (317)
T d1vyhc1 90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169 (317)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEE
Confidence 776655544 2 23345788887775 57899999888776654 5779999999999999999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCC--------------------CEEEEEeCCCeEEEEECCCCCceEEEEecCCC
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNG--------------------VTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g--------------------~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
|++.+++.+..+.+|...+.+++|+|++ .++++++.|++|++||+++ ++++..+.+|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~ 248 (317)
T d1vyhc1 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDN 248 (317)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSS
T ss_pred EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCC
Confidence 9999999999999999999999998864 4689999999999999987 889999999999
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|++++|+|+|++|++|+.||.|+|||+.+++.+..+..|.+.|++++|+|++++|++|+.|+++.
T Consensus 249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~ 314 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999998764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.2e-32 Score=259.27 Aligned_cols=261 Identities=19% Similarity=0.252 Sum_probs=211.5
Q ss_pred eeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 190 ~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+|++|+| ++++|++|+.||.|++|++.+.... ..+..|...|.+++| +|++.. +++++.|+.+++|+....
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~---~~~~~~~~~v~~v~~--~~~~~~-l~~~~~d~~i~~~~~~~~ 129 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAY--APSGNY-VACGGLDNICSIYNLKTR 129 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE---EEEECSCSCEEEEEE--CTTSSE-EEEEETTCCEEEEESSSS
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeecccceeE---EEEecccccEEeeEe--ecccee-eeeecccceeeccccccc
Confidence 47999999 8899999999999999999876544 455678899999999 999986 899999999999998653
Q ss_pred ee----eeeee-ccccEE--eccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEE
Q 011924 268 QL----SKHFR-FPWPVN--VSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 268 ~~----~~~~~-~~~~v~--~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
.. ...+. +..... ....+..+. ....+............ .+....+.+.+.++++++.++.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 209 (340)
T d1tbga_ 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp CSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence 32 22222 111111 111111111 23444444433332222 456788999999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe--cCCCceEEEEEccCCCEEEEE
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GNLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~--~~~~~v~~l~~spdg~~la~~ 408 (475)
+||+++++++..+.+|...|.+++|+|++++|++|+.|++|++||++. ...+..+. .+...|++++|+|+|++|++|
T Consensus 210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g 288 (340)
T d1tbga_ 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECSSSCEEEEE
T ss_pred EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc-cccccccccccccCceEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999987 55555543 455689999999999999999
Q ss_pred cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 409 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 409 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+.||.|+|||+.+++.+..+.+|.++|.+++|+|++++|++|+.|+++.
T Consensus 289 ~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~ 337 (340)
T d1tbga_ 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEE
Confidence 9999999999999999999999999999999999999999999999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.4e-32 Score=264.77 Aligned_cols=235 Identities=12% Similarity=0.072 Sum_probs=200.0
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
...||+|++| ++++|++|+.+|.|++|++...+. .+...+.+|.+.|++++| +|++++ |++++.|++|++||+.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~f--sp~~~~-l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDW--APDSNR-IVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEE--ETTTTE-EEEEETTSCEEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEE--CCCCCE-EEEEECCCeEEEEeec
Confidence 3457999999 889999999999999999875442 335667789999999999 999986 8999999999999998
Q ss_pred CCeeeeeee---ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce---
Q 011924 266 KYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--- 339 (475)
Q Consensus 266 ~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--- 339 (475)
++.....+. +...+. +++|+|+++.|++++.++.+++|++.....
T Consensus 82 ~~~~~~~~~~~~~~~~v~-----------------------------~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~ 132 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAAR-----------------------------CVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132 (371)
T ss_dssp TTEEEEEEECCCCSSCEE-----------------------------EEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred cccccccccccccccccc-----------------------------ccccccccccceeecccCcceeeeeeccccccc
Confidence 776544433 566788 999999999999999999999999876543
Q ss_pred -EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-----------------CceEEEEecCCCceEEEEEccC
Q 011924 340 -IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-----------------SESVAVLKGNLGAIRSIRYTSD 401 (475)
Q Consensus 340 -~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~-----------------~~~~~~~~~~~~~v~~l~~spd 401 (475)
.....+|...|.+++|+|++++|++|+.|++|++||+... +..+.....|.+.|.+++|+|+
T Consensus 133 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 212 (371)
T d1k8kc_ 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212 (371)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred ccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence 2334578899999999999999999999999999998542 1345666778899999999999
Q ss_pred CCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 402 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
|++|++++.|+.|++||+.++..+..+..|..+|.+++|+|++++|++ +.|+.+
T Consensus 213 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~-g~d~~~ 266 (371)
T d1k8kc_ 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFP 266 (371)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE-ETTSSC
T ss_pred cccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEE-EcCCce
Confidence 999999999999999999999999999999999999999999977765 446654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.2e-32 Score=255.71 Aligned_cols=227 Identities=18% Similarity=0.205 Sum_probs=197.5
Q ss_pred EEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee--e
Q 011924 194 TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS--K 271 (475)
Q Consensus 194 ~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~--~ 271 (475)
+.+.+|+.|+.++ ++.|.+|++.+.... ..+.+|...|++++| +|+|++ |++|+.||+|++||+.+++.. .
T Consensus 24 a~~~~g~~l~~~~-~~~v~i~~~~~~~~~---~~~~~H~~~v~~~~~--sp~g~~-latg~~dg~i~iwd~~~~~~~~~~ 96 (311)
T d1nr0a1 24 GNTPAGDKIQYCN-GTSVYTVPVGSLTDT---EIYTEHSHQTTVAKT--SPSGYY-CASGDVHGNVRIWDTTQTTHILKT 96 (311)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTCSSCC---EEECCCSSCEEEEEE--CTTSSE-EEEEETTSEEEEEESSSTTCCEEE
T ss_pred EEcCCCCEEEEEe-CCEEEEEECCCCcee---EEEcCCCCCEEEEEE--eCCCCe-EeccccCceEeeeeeecccccccc
Confidence 3344888888875 667999999876655 456789999999999 999986 999999999999999886543 3
Q ss_pred eee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC--CCcEEEEECCCCceEEEeecCCC
Q 011924 272 HFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD--NPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 272 ~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
.+. +..+|. +++|+|++++|++++. +..+++|++.+++....+.+|..
T Consensus 97 ~~~~~~~~v~-----------------------------~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~ 147 (311)
T d1nr0a1 97 TIPVFSGPVK-----------------------------DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR 147 (311)
T ss_dssp EEECSSSCEE-----------------------------EEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS
T ss_pred ccccccCccc-----------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 344 677888 9999999999999885 45699999999999999999999
Q ss_pred CeEEEEEecCCCE-EEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEE
Q 011924 349 FSFASAWHPNGVT-FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 427 (475)
Q Consensus 349 ~v~~~~~sp~g~~-l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~ 427 (475)
.|.+++|+|++++ |++|+.|++|++||+++ .+....+..|...|++++|+|++++|++++.|+.|++||+.++.....
T Consensus 148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccccccccccceeeecccccccccccccccc-cccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence 9999999998875 88999999999999987 788889999999999999999999999999999999999998877665
Q ss_pred Ee-------ccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 428 EI-------DFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 428 ~~-------~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+. +|.+.|.+++|+|++++|++|+.|+++.
T Consensus 227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~ 263 (311)
T d1nr0a1 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263 (311)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccccccccccccccccccCCCCCEEEEEeCCCeEE
Confidence 53 4678999999999999999999998663
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-31 Score=251.11 Aligned_cols=233 Identities=16% Similarity=0.213 Sum_probs=201.9
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCc--eEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEEC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGV--SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~ 264 (475)
...|++++| ++++|++|+ +|.|+||++..... .........|.+.|.+++| +|+|+. |++++.|++|++||+
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~--s~dg~~-l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL--LPDGCT-LIVGGEASTLSIWDL 126 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE--CTTSSE-EEEEESSSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEE--cCCCCE-EEEeecccccccccc
Confidence 457899999 889999987 89999999976542 2223445678899999999 999986 899999999999998
Q ss_pred CCC--eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 265 GKY--QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~--~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
... +....+. +...+. +++|+|++.++++++.++.+++|++.++++..
T Consensus 127 ~~~~~~~~~~~~~~~~~v~-----------------------------~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 127 AAPTPRIKAELTSSAPACY-----------------------------ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp CCC--EEEEEEECSSSCEE-----------------------------EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccccccccccccccccccc-----------------------------cccccccccccccccccccccccccccccccc
Confidence 754 3444444 566777 89999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 421 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~ 421 (475)
...+|...+.+++|+|++..+++++.|+.|++||+++ ++.+..+. +...|.+++|+|++++|++++.++.|++||+.+
T Consensus 178 ~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~ 255 (337)
T d1gxra_ 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred ccccccccccccccccccccccccccccccccccccc-ceeecccc-cccceEEEEEcccccccceeccccccccccccc
Confidence 9999999999999999999999999999999999987 66666654 678999999999999999999999999999998
Q ss_pred CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 422 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 422 ~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+... ....|.+.|.+++|+|+|++|++|+.|+.+.
T Consensus 256 ~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~ 290 (337)
T d1gxra_ 256 PDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp SCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccc-cccccccccceEEECCCCCEEEEEeCCCeEE
Confidence 7654 5667899999999999999999999998764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.2e-31 Score=249.06 Aligned_cols=264 Identities=11% Similarity=0.090 Sum_probs=205.5
Q ss_pred cceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECC
Q 011924 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~ 265 (475)
|..+|++++| ++++|++|+.||.|++|++.+.... ......|...|.+++| +|+|. +++++.|+.+++|++.
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~h~~~v~~v~~--~~~g~--~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFPDVHATMITGIKT--TSKGD--LFTVSWDDHLKVVPAG 84 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSSCSCSSCEEEEEE--CTTSC--EEEEETTTEEEEECSS
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCCcEEEEEe--eccce--eecccceeeEEEeccC
Confidence 3457999999 8899999999999999999876544 2334578899999999 99986 5566789999999986
Q ss_pred CCeeee----eee---ccccEEeccCCceEE-----EEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEE
Q 011924 266 KYQLSK----HFR---FPWPVNVSSSYCIIL-----LCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVD 333 (475)
Q Consensus 266 ~~~~~~----~~~---~~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd 333 (475)
...... ... ....+.+++++..+. .+.+|+............+.+++|+|++++|++++.++.|++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d 164 (299)
T d1nr0a2 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164 (299)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 532211 111 234566888887774 57888866554444444677899999999999999999999999
Q ss_pred CCCCceEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc--eEEEEecCCCceEEEEEccCCCEEEEEcC
Q 011924 334 SMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEP 410 (475)
Q Consensus 334 ~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~spdg~~la~~~~ 410 (475)
+++++... ....|...|.+++|+|++++|++++.|+.|++||+.+... ....+.+|..+|++++|+|+|++|++|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 165 LSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp EETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence 98877543 3456899999999999999999999999999999976322 23445678889999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEe--ccC-CCeEEEEEcCCCCeEEEEEecCCcce
Q 011924 411 ADFVHVYDVKSGYEKEQEI--DFF-GEISGISFSPDTESLFIGVWDRTYGS 458 (475)
Q Consensus 411 dg~i~iwd~~~~~~~~~~~--~~~-~~i~~l~fspdg~~l~~~~~D~~~~~ 458 (475)
|+.|+|||+.++....... .|. ..+..+.| +++++|++|+.|++++.
T Consensus 245 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i 294 (299)
T d1nr0a2 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF 294 (299)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence 9999999998765443333 233 45666654 56789999999988753
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=1.1e-29 Score=246.78 Aligned_cols=273 Identities=12% Similarity=0.094 Sum_probs=212.7
Q ss_pred ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 134 RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 134 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+.|.++...|++. .++.|.+|+..+++...+..+.|| ..+|.+++| ++++|++|+.||.
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH----------------~~~V~~l~fsp~~~~l~s~s~D~~ 74 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTDRN 74 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC----------------CCCEEEEEECCCCCEEEEEECCCe
Confidence 455577777777665 457899999877765555444432 347999999 7999999999999
Q ss_pred EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeee---e--ccccEEeccCC
Q 011924 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF---R--FPWPVNVSSSY 285 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~---~--~~~~v~~s~~~ 285 (475)
|++|++...... +......|...|.+++| +|+++. |++++.|++|++|++......... . +...|.
T Consensus 75 i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~--~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~----- 145 (371)
T d1k8kc_ 75 AYVWTLKGRTWK-PTLVILRINRAARCVRW--APNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL----- 145 (371)
T ss_dssp EEEEEEETTEEE-EEEECCCCSSCEEEEEE--CTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE-----
T ss_pred EEEEeecccccc-ccccccccccccccccc--cccccc-ceeecccCcceeeeeecccccccccccccccccccc-----
Confidence 999999765433 23455678889999999 999986 899999999999988664332221 1 456677
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCC------------------ceEEEeecCC
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTG------------------KTIASLCGHL 347 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------------------~~~~~l~~h~ 347 (475)
+++|+|++++|++++.|+.+++|++... ..+....+|.
T Consensus 146 ------------------------~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (371)
T d1k8kc_ 146 ------------------------SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 201 (371)
T ss_dssp ------------------------EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred ------------------------cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence 9999999999999999999999997642 3556677899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC--CCCeeE
Q 011924 348 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV--KSGYEK 425 (475)
Q Consensus 348 ~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~--~~~~~~ 425 (475)
..|.+++|+|++++|++++.|++|++||+.. +..+..+..|..+|.+++|+|+|++|++|+ |+.+++|.. ..+...
T Consensus 202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~ 279 (371)
T d1k8kc_ 202 GWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS 279 (371)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEE
T ss_pred CcEEEEEeecccccccccccCCcceEEeeec-ccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEE
Confidence 9999999999999999999999999999977 788999999999999999999999888776 666666543 222210
Q ss_pred EE---------------------------------------EeccCCCeEEEEEcCCC----CeEEEEEecCCcc
Q 011924 426 EQ---------------------------------------EIDFFGEISGISFSPDT----ESLFIGVWDRTYG 457 (475)
Q Consensus 426 ~~---------------------------------------~~~~~~~i~~l~fspdg----~~l~~~~~D~~~~ 457 (475)
.. ...|.+.|+++++.|.+ ..|++++.|+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~ 354 (371)
T d1k8kc_ 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354 (371)
T ss_dssp ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred EeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEE
Confidence 00 00267789999998855 3588999998775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.5e-29 Score=235.78 Aligned_cols=275 Identities=14% Similarity=0.079 Sum_probs=210.7
Q ss_pred eeEEecCCCeEEEecCCeE--EEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE----cCcEEEEEecC
Q 011924 135 NLVWATSKHDVYLMSHFSV--IHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQ 208 (475)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~v--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----~~~~lvsg~~d 208 (475)
.+-|.+....+.+.+...+ ..|+........+..+.|| +...|++++| ++.+|++|+.|
T Consensus 22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh---------------~~~~v~~v~fsP~~~g~~lasgs~D 86 (325)
T d1pgua1 22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH---------------GSSVVTTVKFSPIKGSQYLCSGDES 86 (325)
T ss_dssp CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT---------------TTSCEEEEEECSSTTCCEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCC---------------CCCCEEEEEEeeCCCCCEEEEEeCC
Confidence 4446666666666655554 4455444444444444332 2246899998 56799999999
Q ss_pred ceEEEEeCCCCCceEE-----EeeecCCCCceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCeeeeeee-ccccEEe
Q 011924 209 GELICKHLDRPGVSFC-----SRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFR-FPWPVNV 281 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~-----~~~~~~~~~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (475)
|+|++|++........ ......|.+.|.+++| +++|+.+++++ +.++.+++|+..+++.+..+. |...+.
T Consensus 87 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~- 163 (325)
T d1pgua1 87 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN- 163 (325)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE-
T ss_pred CCEEEeeecCCcceeeeecccccccccccCcEEEEEE--CCCCCccceeeccccceEEEEeecccccceeeeecccccc-
Confidence 9999999865442211 1234568889999999 99999744433 347789999999998888877 788899
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcE-EEEEeCCCcEEEEECCCCceEEEee---cCCCCeEEEEEec
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKL-LIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHP 357 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~-l~~~~~dg~i~iwd~~~~~~~~~l~---~h~~~v~~~~~sp 357 (475)
+++|+|++.. +++++.|+.+++||...++....+. +|...|.+++|+|
T Consensus 164 ----------------------------~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~p 215 (325)
T d1pgua1 164 ----------------------------ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 215 (325)
T ss_dssp ----------------------------EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred ----------------------------cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecc
Confidence 9999998875 6778899999999998887766654 5678899999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc---cCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC
Q 011924 358 N-GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT---SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 433 (475)
Q Consensus 358 ~-g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s---pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~ 433 (475)
+ +.+|++++.|+.|++||+++ ++.+..+.+|..++..+.|+ |+|++|++++.|+.|+|||+++++.+..+..+..
T Consensus 216 d~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 294 (325)
T d1pgua1 216 DSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294 (325)
T ss_dssp TTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred ccceeccccccccceeeeeecc-ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence 6 68999999999999999987 78889999888887766666 7899999999999999999999998888876654
Q ss_pred C--eE--EEEEcCCCCeEEEEEecCCcc
Q 011924 434 E--IS--GISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 434 ~--i~--~l~fspdg~~l~~~~~D~~~~ 457 (475)
. +. ++.|.++ .+|++++.|+++.
T Consensus 295 ~~~~~~~~~~~~~~-~~l~s~s~dg~i~ 321 (325)
T d1pgua1 295 QLGNQQVGVVATGN-GRIISLSLDGTLN 321 (325)
T ss_dssp CGGGCEEEEEEEET-TEEEEEETTSCEE
T ss_pred cccCeEEEEEECCC-CEEEEEECCCEEE
Confidence 3 33 4444444 4788999998875
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-28 Score=233.10 Aligned_cols=255 Identities=16% Similarity=0.193 Sum_probs=198.2
Q ss_pred eEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee
Q 011924 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (475)
Q Consensus 191 ~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~ 270 (475)
-++|++++|++|++|+.||+|++||+.+.+.. ..+.+|.+.|.++++ +|+ +|++++.|+++++|+.......
T Consensus 19 V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~---~~~~~h~~~V~~v~~--~~~---~l~s~s~D~~~~~~~~~~~~~~ 90 (342)
T d2ovrb2 19 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL---RTLVGHTGGVWSSQM--RDN---IIISGSTDRTLKVWNAETGECI 90 (342)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEE---EECCCCSSCEEEEEE--ETT---EEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEECCCEEEEEeCCCeEEEEECCCCCEE---EEEeCCCCCEEEEEe--CCC---ccccceecccccccccccccce
Confidence 35788999999999999999999999876543 667789999999999 664 5999999999999998765543
Q ss_pred eeee-ccccEE-----------------------------------------eccCCceE------EEEEEeecccceEE
Q 011924 271 KHFR-FPWPVN-----------------------------------------VSSSYCII------LLCRLLNFMTEKVI 302 (475)
Q Consensus 271 ~~~~-~~~~v~-----------------------------------------~s~~~~~l------~~~~v~d~~~~~~~ 302 (475)
.... ....+. .......+ ..+++|+....+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 170 (342)
T d2ovrb2 91 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL 170 (342)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceee
Confidence 3222 111110 00000001 13678888777766
Q ss_pred EEee--eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCC
Q 011924 303 ICLL--CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 380 (475)
Q Consensus 303 ~~~~--~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~ 380 (475)
.... ......+++++..+++++.|+.|++||++.++++..+.+|...+.++++++ ++|++++.|++|++||+.. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~-~ 247 (342)
T d2ovrb2 171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKT-G 247 (342)
T ss_dssp EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTT-C
T ss_pred EEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccc-c
Confidence 5544 334556677899999999999999999999999999999999998887754 6999999999999999977 5
Q ss_pred ceEEEEec---CCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-----ccCCCeEEEEEcCCCCeEEEEEe
Q 011924 381 ESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-----DFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 381 ~~~~~~~~---~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
+....+.. |...+.++.++ ++++++|+.||.|+|||+++++.+..+. +|.+.|++++|+|++.+|++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~ 325 (342)
T d2ovrb2 248 QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325 (342)
T ss_dssp CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred cccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 66666655 34556666554 5699999999999999999998887765 36678999999999999999999
Q ss_pred cCCcce
Q 011924 453 DRTYGS 458 (475)
Q Consensus 453 D~~~~~ 458 (475)
||+...
T Consensus 326 dGt~~~ 331 (342)
T d2ovrb2 326 NGTEET 331 (342)
T ss_dssp SSSSCC
T ss_pred CCCCee
Confidence 997543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=9.2e-28 Score=224.83 Aligned_cols=264 Identities=18% Similarity=0.251 Sum_probs=220.7
Q ss_pred eccc-ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEE
Q 011924 130 HFQL-RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAG 205 (475)
Q Consensus 130 h~~l-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg 205 (475)
|... ..+.|.++...|++. .|+.|++|+..+++....+. + +...|.++++ ++.+++++
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~----------------h~~~V~~~~~~~~~~~~~~~ 77 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--G----------------HTDSVQDISFDHSGKLLASC 77 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--C----------------CSSCEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--C----------------CCCcEEEEeeeccccccccc
Confidence 5443 445577777777665 56999999988876655432 1 2346899999 88999999
Q ss_pred ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-cc---ccEEe
Q 011924 206 GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP---WPVNV 281 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~---~~v~~ 281 (475)
+.++.+.+|+....... .....|...+.++.+ +|++.. +++++.|+.+++|++.+++....+. +. ..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECI---RTMHGHDHNVSSVSI--MPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151 (317)
T ss_dssp ETTSCCCEEETTSSCEE---ECCCCCSSCEEEEEE--CSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ccccccccccccccccc---cccccccccceeeec--cCCCce-EEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence 99999999998765544 555678888888888 999986 8899999999999999988887776 33 34558
Q ss_pred ccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCC--------------------cEEEEEeCCCcEEE
Q 011924 282 SSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDG--------------------KLLIIVGDNPDGLL 331 (475)
Q Consensus 282 s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g--------------------~~l~~~~~dg~i~i 331 (475)
++++..++ .+++|+..+++...... .+.+++++|++ ..+++++.|+.|++
T Consensus 152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred ccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence 88888886 47899999888776544 46677777753 57899999999999
Q ss_pred EECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC
Q 011924 332 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA 411 (475)
Q Consensus 332 wd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d 411 (475)
|++++++++.++.+|...|.+++|+|++++|++|+.||+|+|||+++ ++++..+.+|.+.|++++|+|++++|++|+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D 310 (317)
T d1vyhc1 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310 (317)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987 78899999999999999999999999999999
Q ss_pred CeEEEEE
Q 011924 412 DFVHVYD 418 (475)
Q Consensus 412 g~i~iwd 418 (475)
|+|+|||
T Consensus 311 g~i~iWd 317 (317)
T d1vyhc1 311 QTVKVWE 317 (317)
T ss_dssp SEEEEEC
T ss_pred CeEEEeC
Confidence 9999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.6e-28 Score=232.65 Aligned_cols=289 Identities=13% Similarity=0.108 Sum_probs=211.3
Q ss_pred ecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeC
Q 011924 139 ATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHL 216 (475)
Q Consensus 139 ~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~ 216 (475)
+.+++.|++. .|+.|++|+..+++....+ .+ +..+|.+++| .+++|++|+.||.|++|++
T Consensus 20 ~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l--~~----------------H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 20 QFEDNYVITGADDKMIRVYDSINKKFLLQL--SG----------------HDGGVWALKYAHGGILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEETTEEEEEETTTEEEEEETTTTEEEEEE--EC----------------CSSCEEEEEEETTTEEEEEETTCCEEEEET
T ss_pred EECCCEEEEEeCCCeEEEEECCCCcEEEEE--EC----------------CCCCEEEEEEcCCCEEEEEecccccccccc
Confidence 4455666664 5699999998877654433 22 2347999999 7789999999999999999
Q ss_pred CCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----------------------
Q 011924 217 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------------------- 274 (475)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------------------- 274 (475)
....... ...............+++++.. +++++.|+.|++|++.+........
T Consensus 82 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 82 KKGCCTH---VFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp TTTEEEE---EECCCSSCEEEEEEEEETTEEE-EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred ccccccc---ccccccccccccccccccccce-eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence 8755442 2222222333333333778775 8999999999999998755432221
Q ss_pred --ccccEE-eccCCceEE------EEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE
Q 011924 275 --FPWPVN-VSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA 341 (475)
Q Consensus 275 --~~~~v~-~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~ 341 (475)
+...+. +.+.+..+. .+++||..+++.+.... .+.++.++|++.++++++.|+.|++||++++..+.
T Consensus 158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237 (355)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred eeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence 111111 223333332 47899999888766544 56688999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEE-EEccCCCEEEEEcCCCeEEEEECC
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSI-RYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l-~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
.+.+|...|.+++|+| ++|++|+.||+|++||+++. . ..+..|...+.++ .+++++++|++|+ |+.|+|||++
T Consensus 238 ~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~ 311 (355)
T d1nexb2 238 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY-S--RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 311 (355)
T ss_dssp EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC-C--EEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETT
T ss_pred cccccccccccccccc--ceeeeeeccccccccccccc-c--eecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECC
Confidence 9999999999999864 79999999999999999763 3 3344455555554 5677888777765 8999999999
Q ss_pred CCeeEE-EEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 421 SGYEKE-QEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 421 ~~~~~~-~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+++.+. .+..|.++|.+++|+|+ ..|++++.||++
T Consensus 312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~ 347 (355)
T d1nexb2 312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQS 347 (355)
T ss_dssp TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcE
Confidence 998775 35568899999999997 467788889876
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.6e-28 Score=234.44 Aligned_cols=234 Identities=17% Similarity=0.228 Sum_probs=190.9
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEE---------------eeecCCCCceeEEEEEeCCCCCeEEE
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS---------------RTTYDDNAITNAVEIYGSPSGAVHFT 251 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~---------------~~~~~~~~~v~~l~~~~s~~g~~~l~ 251 (475)
...|+|++| +|++|++|+ ||.|++|++.+....... .....|...|.+++| +|+|+. |+
T Consensus 62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~~~~-l~ 137 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKF-LA 137 (388)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE--CTTSSE-EE
T ss_pred CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE--CCCCCc-ce
Confidence 357999999 889999986 899999999876543211 122356777999999 999986 99
Q ss_pred EEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEE
Q 011924 252 ASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGL 330 (475)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~ 330 (475)
+|+.||.|++|+...++.+..+. +...|. ++++++++..+++++.++.++
T Consensus 138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-----------------------------~~~~~~~~~~~~~~~~~~~i~ 188 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIY-----------------------------SLDYFPSGDKLVSGSGDRTVR 188 (388)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEE-----------------------------EEEECTTSSEEEEEETTSEEE
T ss_pred eccccccccccccccccccccccccccccc-----------------------------ccccccccccccccccceeee
Confidence 99999999999999998887776 788888 999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCceEEEE-------ecCCCceEEEEEccCC
Q 011924 331 LVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL-------KGNLGAIRSIRYTSDG 402 (475)
Q Consensus 331 iwd~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~~~~~~-------~~~~~~v~~l~~spdg 402 (475)
+||.++.........+.. ..++.++| ++++|++|+.|+.|++||+++ +..+..+ .+|.+.|++++|+|+|
T Consensus 189 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 189 IWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp EEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred eeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeeccc-CccceeeccccccccCCCCCEEEEEECCCC
Confidence 999998888877775554 55555655 899999999999999999986 4444443 3577899999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCee------------EEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 403 RYMATAEPADFVHVYDVKSGYE------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++|++++.|+.|++||+.++.. ......|...|.+++|+|+|++|++|+.|+++.
T Consensus 267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 333 (388)
T d1erja_ 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333 (388)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999999999999999976532 334456788999999999999999999988763
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3.8e-27 Score=223.80 Aligned_cols=239 Identities=17% Similarity=0.282 Sum_probs=192.2
Q ss_pred eeccc-ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEE
Q 011924 129 LHFQL-RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 204 (475)
Q Consensus 129 ~h~~l-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvs 204 (475)
.|... +.+.|+++...|++. .++.|++|+..+++....+.. +..+|.+++| ++.++++
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~------------------~~~~v~~v~~~~~~~~l~~ 114 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL------------------RSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC------------------SCSCEEEEEECTTSSEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec------------------ccccEEeeEeeccceeeee
Confidence 46554 444577777777775 579999999988766554331 2347899999 8899999
Q ss_pred EecCceEEEEeCCCCCceE-EEeeec-----------------------------------------CCCCceeEEEEEe
Q 011924 205 GGFQGELICKHLDRPGVSF-CSRTTY-----------------------------------------DDNAITNAVEIYG 242 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~-~~~~~~-----------------------------------------~~~~~v~~l~~~~ 242 (475)
|+.++.+.+|+........ ...... .+...+....+
T Consensus 115 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (340)
T d1tbga_ 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL-- 192 (340)
T ss_dssp EETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE--
T ss_pred ecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecc--
Confidence 9999999999975433110 011111 12223444444
Q ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE
Q 011924 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI 321 (475)
Q Consensus 243 s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~ 321 (475)
.+.+.. +++++.|+.|++||+++++++..+. +..+|. +++|+|++++|+
T Consensus 193 ~~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-----------------------------~v~~~p~~~~l~ 242 (340)
T d1tbga_ 193 APDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDIN-----------------------------AICFFPNGNAFA 242 (340)
T ss_dssp CTTSSE-EEEEETTTEEEEEETTTTEEEEEECCCSSCEE-----------------------------EEEECTTSSEEE
T ss_pred ccccce-eEEeecCceEEEEECCCCcEEEEEeCCCCCeE-----------------------------EEEECCCCCEEE
Confidence 666664 8889999999999999999888877 778888 999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc
Q 011924 322 IVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 399 (475)
Q Consensus 322 ~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 399 (475)
+++.|+.|++|+++....+..+. .+...+.+++|+|++++|++|+.||+|++||+.+ ++++..+.+|.++|++++|+
T Consensus 243 s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s 321 (340)
T d1tbga_ 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEEC
T ss_pred EEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEe
Confidence 99999999999999888877664 4667899999999999999999999999999987 78999999999999999999
Q ss_pred cCCCEEEEEcCCCeEEEEE
Q 011924 400 SDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 400 pdg~~la~~~~dg~i~iwd 418 (475)
|+|++|++|+.||.|+|||
T Consensus 322 ~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEccCCEEEEeC
Confidence 9999999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.8e-27 Score=225.43 Aligned_cols=254 Identities=16% Similarity=0.181 Sum_probs=198.8
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..|+|+++++++|++|+.||+|++||+.+.+. ...+.+|.+.|.+++| +|++ +|++|+.|++|++|++...+.
T Consensus 14 ~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~---~~~l~~H~~~V~~l~~--s~~~--~l~s~s~D~~i~iw~~~~~~~ 86 (355)
T d1nexb2 14 SVITCLQFEDNYVITGADDKMIRVYDSINKKF---LLQLSGHDGGVWALKY--AHGG--ILVSGSTDRTVRVWDIKKGCC 86 (355)
T ss_dssp SCEEEEEEETTEEEEEETTTEEEEEETTTTEE---EEEEECCSSCEEEEEE--ETTT--EEEEEETTCCEEEEETTTTEE
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEECCCCcE---EEEEECCCCCEEEEEE--cCCC--EEEEEeccccccccccccccc
Confidence 34789999999999999999999999986543 3566789999999999 8765 489999999999999998877
Q ss_pred eeeeeccc------cEEeccCCceEE------EEEEeecccceEEEEee-------------------------eeeeEE
Q 011924 270 SKHFRFPW------PVNVSSSYCIIL------LCRLLNFMTEKVIICLL-------------------------CLQHSS 312 (475)
Q Consensus 270 ~~~~~~~~------~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~-------------------------~i~~~~ 312 (475)
........ ...+++++..++ .+++|+..++....... ......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (355)
T d1nexb2 87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166 (355)
T ss_dssp EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE
T ss_pred ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc
Confidence 65554211 122455555553 68999987765432211 011234
Q ss_pred ECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCc
Q 011924 313 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 392 (475)
Q Consensus 313 ~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 392 (475)
+.+++++++++..++.+++||+++++.+..+.++...+.++.|+|++.++++++.|++|++||+++ +.++..+.+|...
T Consensus 167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~ 245 (355)
T d1nexb2 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL 245 (355)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC
T ss_pred cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc-ccccccccccccc
Confidence 566789999999999999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred eEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEE-EEcCCCCeEEEEEecCCc
Q 011924 393 IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI-SFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 393 v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l-~fspdg~~l~~~~~D~~~ 456 (475)
|.+++|++ ++|++|+.||.|++||+.++... +..|...+..+ .|++++.+|++ +.|+++
T Consensus 246 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~-g~d~~i 305 (355)
T d1nexb2 246 VGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVS-GSENQF 305 (355)
T ss_dssp CCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEE-EETTEE
T ss_pred cccccccc--ceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEE-EeCCEE
Confidence 99999874 69999999999999999987654 33455566555 45667666555 457654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-26 Score=214.99 Aligned_cols=251 Identities=14% Similarity=0.178 Sum_probs=196.6
Q ss_pred eeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 190 ~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..|+|+++++++||+|+.||.|++||+.+.+.. ..+.+|.+.|.++++ +++. |++|+.|+.|++|++..+..
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~---~~l~~H~~~V~~v~~----~~~~-l~s~s~D~~i~~~~~~~~~~ 87 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECK---RILTGHTGSVLCLQY----DERV-IITGSSDSTVRVWDVNTGEM 87 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEE---EEECCCSSCEEEEEC----CSSE-EEEEETTSCEEEEESSSCCE
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEE---EEEecCCCCEeeeec----ccce-eecccccccccccccccccc
Confidence 469999999999999999999999999875544 566789999998866 5554 99999999999999988876
Q ss_pred eeeeecc--ccEEeccCCceEE------EEEEeecccceEEEEee-------eeeeEEECCCCcEEEEEeCCCcEEEEEC
Q 011924 270 SKHFRFP--WPVNVSSSYCIIL------LCRLLNFMTEKVIICLL-------CLQHSSQSPDGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 270 ~~~~~~~--~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~-------~i~~~~~sp~g~~l~~~~~dg~i~iwd~ 334 (475)
....... ....+......+. .+.+|+........... .+.++.+ ....+++++.|+.+++||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 88 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT 165 (293)
T ss_dssp EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred cccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeecC
Confidence 6655422 2222223333332 46788887644322111 3333443 4567888999999999999
Q ss_pred CCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeE
Q 011924 335 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 414 (475)
Q Consensus 335 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i 414 (475)
++++.+..+.++...+..+.++ +.++++++.|++|++||+++ ...+....++...+.. +++++.+|++++.||.|
T Consensus 166 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i 240 (293)
T d1p22a2 166 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKI 240 (293)
T ss_dssp TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEE--EECCSSEEEEEETTSCE
T ss_pred CCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc-ceeeeeecccceeeee--ccccceEEEEEcCCCEE
Confidence 9999999999999988887775 57899999999999999987 7788888888877754 56788899999999999
Q ss_pred EEEECCC---------CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 415 HVYDVKS---------GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 415 ~iwd~~~---------~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
++||+.+ ...+..+..|.+.|.+++|+ +.+|++|+.|+++.
T Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~ 290 (293)
T d1p22a2 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTIL 290 (293)
T ss_dssp EEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEE
T ss_pred EEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEE
Confidence 9999743 23567778899999999995 56899999998874
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.7e-28 Score=236.51 Aligned_cols=237 Identities=12% Similarity=0.086 Sum_probs=166.5
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEE---e--ee--cCCCCceeEEEEEeCCCC----CeEEEEEeCCCeEEEEECCC
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCS---R--TT--YDDNAITNAVEIYGSPSG----AVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~---~--~~--~~~~~~v~~l~~~~s~~g----~~~l~s~s~dg~v~iwd~~~ 266 (475)
+..++++++.||.|++|++......... . .. ..+...+..+++ .+++ ..++++++.|+++++|++..
T Consensus 78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEE--ecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 3457889999999999997644321111 1 11 123345667777 4432 23488899999999999853
Q ss_pred Ceeee-eee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe-
Q 011924 267 YQLSK-HFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL- 343 (475)
Q Consensus 267 ~~~~~-~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l- 343 (475)
..... .+. ...... .+ ....... ......+.+++|+|++ +|++|+.|+.|+|||+.+++++..+
T Consensus 156 ~~~~~~~~~~~~~~~~------~~-~~~~~~~-----~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~ 222 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTL------EL-QGTVESP-----MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE 222 (393)
T ss_dssp SSSHHHHTTTCCCCEE------EE-EEEECCS-----SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CCcccceeeeeeccce------ec-ccceecc-----cCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccc
Confidence 21100 000 000000 00 0000000 0000012389999998 8899999999999999999877654
Q ss_pred -----ecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCCceEEEEe-------------cCCCceEEEEEccCC
Q 011924 344 -----CGHLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLK-------------GNLGAIRSIRYTSDG 402 (475)
Q Consensus 344 -----~~h~~~v~~~~~sp~g~~l~t~s~dg---~v~iwd~~~~~~~~~~~~-------------~~~~~v~~l~~spdg 402 (475)
.+|..+|.+++|+|+|++|++|+.|+ .|++||++. ++.+..+. +|.+.|++++|+|+|
T Consensus 223 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~ 301 (393)
T d1sq9a_ 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301 (393)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred cccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence 46899999999999999999999887 499999976 66666653 788999999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeE----EEEEcCCCCeEEEE
Q 011924 403 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS----GISFSPDTESLFIG 450 (475)
Q Consensus 403 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~----~l~fspdg~~l~~~ 450 (475)
++|++|+.|++|+|||+++++++.++.+|.+.|. .++|+|++..++++
T Consensus 302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred CeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 9999999999999999999999999999987664 46777777766543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.7e-27 Score=222.10 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=195.1
Q ss_pred ceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCe
Q 011924 189 QTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (475)
Q Consensus 189 ~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~ 268 (475)
..+|++|+++. |++|+.||.|++|++.. ....|...|.++.+ ++++ . +++++.|++|++|++...+
T Consensus 13 ~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~--------~~~~h~~~V~~~~~--~~~~-~-~~s~s~D~~v~~w~~~~~~ 78 (287)
T d1pgua2 13 NKGITALTVNP--LISGSYDGRIMEWSSSS--------MHQDHSNLIVSLDN--SKAQ-E-YSSISWDDTLKVNGITKHE 78 (287)
T ss_dssp SSCEEEEETTT--TEEEETTSCEEETTTTE--------EECCCCSCEEEEEC--CSTT-C-CEEEETTTEEEETTEEEEE
T ss_pred CCceEEEEECc--EEEEeCCCeEEEEECCC--------CCCCCCCCEEEEEe--cCCC-e-EEEEeeccccccccccccc
Confidence 34799999965 99999999999999763 23478889999988 7665 3 7889999999999975533
Q ss_pred eeeeeeccccEEeccCCceEE-----EEEEeecccceEEEEee-eeeeEEECCCCcEEEEEeCCC-cEEEEECCCCceEE
Q 011924 269 LSKHFRFPWPVNVSSSYCIIL-----LCRLLNFMTEKVIICLL-CLQHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIA 341 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~-----~~~v~d~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~dg-~i~iwd~~~~~~~~ 341 (475)
... .+..+.+++++..+. .+.+|+..+++...... .....+++|++..+++++.++ .+++|++...+...
T Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~ 155 (287)
T d1pgua2 79 FGS---QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF 155 (287)
T ss_dssp CSS---CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred ccc---ceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceee
Confidence 211 122334455554443 46778888877766544 344567788888998888765 69999998666655
Q ss_pred Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCC----------CEEEEEcC
Q 011924 342 SLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG----------RYMATAEP 410 (475)
Q Consensus 342 ~l~-~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg----------~~la~~~~ 410 (475)
.+. .|...+.+++|+|++.+|++|+.||.|++||+.+.......+.+|...|.+++|+|.+ .+|++|+.
T Consensus 156 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~ 235 (287)
T d1pgua2 156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235 (287)
T ss_dssp ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecC
Confidence 554 4778899999999999999999999999999987333344567889999999998754 68999999
Q ss_pred CCeEEEEECCC-CeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 411 ADFVHVYDVKS-GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 411 dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
|+.|+|||+++ +..+..+.+|.+.|++++|+|++ .|++++.|++++
T Consensus 236 D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~ 282 (287)
T d1pgua2 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK 282 (287)
T ss_dssp TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEE
T ss_pred CCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEE
Confidence 99999999977 44555566799999999999986 688999998874
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.9e-26 Score=216.15 Aligned_cols=273 Identities=13% Similarity=0.154 Sum_probs=195.4
Q ss_pred ceeeecccc-eeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEE
Q 011924 126 STILHFQLR-NLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLL 202 (475)
Q Consensus 126 ~~~~h~~lr-~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l 202 (475)
....|.... .+.|+++...|++. .|+.|++|+..+++....+ ...+...|++++| ....+
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------~~~h~~~v~~v~~~~~g~~ 69 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-----------------PDVHATMITGIKTTSKGDL 69 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-----------------SCSCSSCEEEEEECTTSCE
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------cCCCCCcEEEEEeecccee
Confidence 334465443 34467776777664 5689999998776554321 1123357999999 33356
Q ss_pred EEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEec
Q 011924 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVS 282 (475)
Q Consensus 203 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s 282 (475)
++++.|+.+++|++..............+...+.++++ +|+|.. ++++ .++.+++|+.........-.....+.|+
T Consensus 70 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~-~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~s 145 (299)
T d1nr0a2 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV--SADGDI-AVAA-CYKHIAIYSHGKLTEVPISYNSSCVALS 145 (299)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE--CTTSSC-EEEE-ESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred ecccceeeEEEeccCCcccccccccccccccccccccc--cccccc-cccc-cccccccccccccccccccccccccccc
Confidence 67778999999998754432112233446667888888 999985 5544 5678999996543322221234556788
Q ss_pred cCCceEE------EEEEeecccceEEEE-----eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE---EEeecCCC
Q 011924 283 SSYCIIL------LCRLLNFMTEKVIIC-----LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI---ASLCGHLD 348 (475)
Q Consensus 283 ~~~~~l~------~~~v~d~~~~~~~~~-----~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~l~~h~~ 348 (475)
+++..++ .+++||..+++.... ...|.+++|+|++++|++++.++.|++||+.++..+ ..+.+|..
T Consensus 146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~ 225 (299)
T d1nr0a2 146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225 (299)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9888875 589999987665432 226889999999999999999999999999877654 34567899
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-eEEEEecCC-CceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 349 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-~~~~~~~~~-~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
.|.+++|+|++++|++|+.|++|+|||++.... .+.....|. ..+.++. ++++++|++++.|+.|+|||+.
T Consensus 226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence 999999999999999999999999999986433 233333333 4566664 4667899999999999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.5e-26 Score=218.72 Aligned_cols=266 Identities=10% Similarity=0.032 Sum_probs=197.8
Q ss_pred ceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC
Q 011924 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 189 ~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~ 266 (475)
...|++|+| ++++|++|+.||+|++|++..............|.+.|.+++| +|++..+|++|+.|++|++|++..
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f--~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE--EESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEE--eCCCCCEEEEcccccceeeeeccc
Confidence 346999999 8999999999999999999877655545555579999999999 887776799999999999999987
Q ss_pred Ceeeeeeecc-----ccEEeccCCceEE------EEEEeecccceEEEEe----e------eeeeEEECCCCcEEEEEeC
Q 011924 267 YQLSKHFRFP-----WPVNVSSSYCIIL------LCRLLNFMTEKVIICL----L------CLQHSSQSPDGKLLIIVGD 325 (475)
Q Consensus 267 ~~~~~~~~~~-----~~v~~s~~~~~l~------~~~v~d~~~~~~~~~~----~------~i~~~~~sp~g~~l~~~~~ 325 (475)
.......... ....+.+....+. .+++||...+...... . ......+.+.+..+++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN 168 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEES
T ss_pred ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecC
Confidence 6655444311 1111233333332 5789998654322111 1 2335677888999999999
Q ss_pred CCcEEEEECCCCceE---EEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCCc-----eEEE---------Ee
Q 011924 326 NPDGLLVDSMTGKTI---ASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-----SVAV---------LK 387 (475)
Q Consensus 326 dg~i~iwd~~~~~~~---~~l~~h~~~v~~~~~sp-~g~~l~t~s~dg~v~iwd~~~~~~-----~~~~---------~~ 387 (475)
++.|++|+++.++.. .....+...+.+..+.| ++..+++++.||.+.+|+...... .... ..
T Consensus 169 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T d1yfqa_ 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCC
Confidence 999999999866532 23334555666766665 778999999999999999864221 0111 12
Q ss_pred cCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 388 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 388 ~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
.|...|++++|+|++++||+|+.||.|+|||+.+++.+.++..+ ..+..++|+|+|++|++|+.|.++.
T Consensus 249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~ 317 (342)
T d1yfqa_ 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFK 317 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHH
T ss_pred cccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEE
Confidence 35567899999999999999999999999999999888776543 4566788999999999999987654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-26 Score=220.78 Aligned_cols=234 Identities=16% Similarity=0.154 Sum_probs=182.5
Q ss_pred eEEEEEE--cCcEEEEEecCc-eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCC--CCCeEEEEEeCCCeEEEEECC
Q 011924 191 QVSTLAV--KDKLLVAGGFQG-ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP--SGAVHFTASNNDCGVRDFDMG 265 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~--~g~~~l~s~s~dg~v~iwd~~ 265 (475)
.+++++| +++.|+.++.+. .|+.|+..............++...|++++| +| +|. +|++|+.||+|++||+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~f--sP~~~g~-~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKF--SPIKGSQ-YLCSGDESGKVIVWGWT 95 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEE--CSSTTCC-EEEEEETTSEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEE--eeCCCCC-EEEEEeCCCCEEEeeec
Confidence 4566777 788888775443 3455655443333223333445678999999 87 444 58999999999999986
Q ss_pred CCeeeeee--------e-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC--CCcEEEEEC
Q 011924 266 KYQLSKHF--------R-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD--NPDGLLVDS 334 (475)
Q Consensus 266 ~~~~~~~~--------~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--dg~i~iwd~ 334 (475)
.++....+ . +..+|. +++|+|+++++++++. ++.+.+|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~-----------------------------~v~~s~~~~~l~~~~~~~~~~~~~~~~ 146 (325)
T d1pgua1 96 FDKESNSVEVNVKSEFQVLAGPIS-----------------------------DISWDFEGRRLCVVGEGRDNFGVFISW 146 (325)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEE-----------------------------EEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred CCcceeeeecccccccccccCcEE-----------------------------EEEECCCCCccceeeccccceEEEEee
Confidence 64432221 1 445666 9999999999988764 678999999
Q ss_pred CCCceEEEeecCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCCceEEEEe---cCCCceEEEEEccC-CCEEEEEc
Q 011924 335 MTGKTIASLCGHLDFSFASAWHPNGVT-FATGNQDKTCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSD-GRYMATAE 409 (475)
Q Consensus 335 ~~~~~~~~l~~h~~~v~~~~~sp~g~~-l~t~s~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~spd-g~~la~~~ 409 (475)
.+++.+..+.+|...|.+++|+|++.+ +++++.|+.|++||+.. .+....+. .|...|++++|+|+ +++|++++
T Consensus 147 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~ 225 (325)
T d1pgua1 147 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225 (325)
T ss_dssp TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred cccccceeeeecccccccccccccccceEEEeecccccccccccc-cccceecccccCCCCccEEeeeccccceeccccc
Confidence 999999999999999999999998765 77899999999999975 44444443 45678999999996 68999999
Q ss_pred CCCeEEEEECCCCeeEEEEeccCCCeEEEEEc---CCCCeEEEEEecCCcc
Q 011924 410 PADFVHVYDVKSGYEKEQEIDFFGEISGISFS---PDTESLFIGVWDRTYG 457 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fs---pdg~~l~~~~~D~~~~ 457 (475)
.|+.|++||+++++.+..+..|...+.++.|+ |+|++|++++.|+++.
T Consensus 226 ~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~ 276 (325)
T d1pgua1 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276 (325)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEE
Confidence 99999999999999999988888877776666 7899999999998763
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-25 Score=219.83 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=177.3
Q ss_pred cceeEEEEEEcCcEEEEEecCceEEEEeCCCCCceE---EEeeecCCCCceeEEEEE----eCCCCCeEEEEEeCCCeEE
Q 011924 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSF---CSRTTYDDNAITNAVEIY----GSPSGAVHFTASNNDCGVR 260 (475)
Q Consensus 188 ~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~---~~~~~~~~~~~v~~l~~~----~s~~g~~~l~s~s~dg~v~ 260 (475)
|...|.++++.+++|++|+.||+|++|+........ .......|...+..+... .+.....++++++.||.|+
T Consensus 13 H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~ 92 (393)
T d1sq9a_ 13 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 92 (393)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred ccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEE
Confidence 445899999988999999999999999976543210 011122233333222211 1222234578899999999
Q ss_pred EEECCCCeeeeeee-----------ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCC-----CcEEEEEe
Q 011924 261 DFDMGKYQLSKHFR-----------FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPD-----GKLLIIVG 324 (475)
Q Consensus 261 iwd~~~~~~~~~~~-----------~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~-----g~~l~~~~ 324 (475)
+|++........+. ++..+. .++|.++ +.++++++
T Consensus 93 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 143 (393)
T d1sq9a_ 93 FYRITREDETKKVIFEKLDLLDSDMKKHSFW-----------------------------ALKWGASNDRLLSHRLVATD 143 (393)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEE-----------------------------EEEEECCC----CEEEEEEE
T ss_pred EEEccCCCceeeeeccccceeeeccCCCceE-----------------------------EEEEecCCCcccccEEEEEc
Confidence 99975432211111 112222 5556553 57889999
Q ss_pred CCCcEEEEECCCCc-----------e-------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEE
Q 011924 325 DNPDGLLVDSMTGK-----------T-------IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 386 (475)
Q Consensus 325 ~dg~i~iwd~~~~~-----------~-------~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~ 386 (475)
.|+.+++|++.... . ......+...+.+++|+|++ +||+|+.|++|+|||+++ ++++..+
T Consensus 144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~-~~~~~~~ 221 (393)
T d1sq9a_ 144 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNF 221 (393)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEE
T ss_pred CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc-ccccccc
Confidence 99999999975221 0 11112355678999999997 899999999999999976 5655544
Q ss_pred ------ecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEe-------------ccCCCeEEEEEcCCC
Q 011924 387 ------KGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEI-------------DFFGEISGISFSPDT 444 (475)
Q Consensus 387 ------~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~-------------~~~~~i~~l~fspdg 444 (475)
.+|..+|++++|+|+|++|++|+.|+ .|++||++++..+..+. +|.+.|++++|+|+|
T Consensus 222 ~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~ 301 (393)
T d1sq9a_ 222 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301 (393)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence 45788999999999999999999886 59999999988777664 688999999999999
Q ss_pred CeEEEEEecCCcc-------eEEEEEeecc
Q 011924 445 ESLFIGVWDRTYG-------SLLEYGRCRN 467 (475)
Q Consensus 445 ~~l~~~~~D~~~~-------~ll~~~~~~~ 467 (475)
++|++|+.|++++ .++...++|.
T Consensus 302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence 9999999888764 5666666664
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.2e-23 Score=195.74 Aligned_cols=237 Identities=14% Similarity=0.115 Sum_probs=185.2
Q ss_pred EEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE-cCcEEEEEecCceEEEEeCCCCCce
Q 011924 145 VYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVS 222 (475)
Q Consensus 145 v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~ 222 (475)
|+. ..|+.|++|+..++. . .+...|.++++ ++..+++++.|+++++|++...
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~-------~----------------~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~--- 77 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMH-------Q----------------DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH--- 77 (287)
T ss_dssp TEEEETTSCEEETTTTEEE-------C----------------CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE---
T ss_pred EEEEeCCCeEEEEECCCCC-------C----------------CCCCCEEEEEecCCCeEEEEeecccccccccccc---
Confidence 444 467999999865321 1 12346899999 7788999999999999986531
Q ss_pred EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccc-cEEeccCCceEE-------EEEEe
Q 011924 223 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW-PVNVSSSYCIIL-------LCRLL 294 (475)
Q Consensus 223 ~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~s~~~~~l~-------~~~v~ 294 (475)
.....+..+.+ ++++.. +++ +.++.+.+|+..+++.+..+.... ...+++++..++ .+++|
T Consensus 78 -------~~~~~~~~~~~--~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~ 146 (287)
T d1pgua2 78 -------EFGSQPKVASA--NNDGFT-AVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF 146 (287)
T ss_dssp -------ECSSCEEEEEE--CSSSEE-EEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred -------ccccceeeeee--ccCCce-EEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeee
Confidence 12233556666 777753 444 467789999999988888877433 344666666654 47899
Q ss_pred ecccceEEEEee-----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEEecC----------
Q 011924 295 NFMTEKVIICLL-----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPN---------- 358 (475)
Q Consensus 295 d~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~~~~~sp~---------- 358 (475)
+....+...... .+.+++|+|++.+|++++.+|.|++||+.+++... .+.+|..+|.+++|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence 887665554432 57899999999999999999999999999887654 46789999999999874
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 359 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 359 g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
+.+|++|+.|++|+|||+++..+.+..+.+|.+.|++++|+|++ .|++++.|+.|++|++
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 46899999999999999988677888888999999999999987 5888899999999995
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=3.1e-23 Score=198.39 Aligned_cols=259 Identities=12% Similarity=0.028 Sum_probs=191.8
Q ss_pred Eec-CCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCc--eEE
Q 011924 138 WAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQG--ELI 212 (475)
Q Consensus 138 ~~~-~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg--~i~ 212 (475)
|++ ++..+.+.+.+.|++|+...+....+ .+...|.+++| +|++|++++.+. .|+
T Consensus 10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--------------------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~ 69 (360)
T d1k32a3 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--------------------PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69 (360)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSSBEEEC--------------------SCCSCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEECCeEEEEECCCCcEEEc--------------------cCCCCEEEEEECCCCCEEEEEEcCCCCEEE
Confidence 676 67778888899999998766543321 12346889999 898888766553 789
Q ss_pred EEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEE
Q 011924 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLC 291 (475)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~ 291 (475)
+|++..... ..+..|...+.+++| +|+|+. |++++.++.+++|++.+++....+. +...+.
T Consensus 70 v~d~~~~~~----~~~~~~~~~v~~~~~--spdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 131 (360)
T d1k32a3 70 IYDYRTGKA----EKFEENLGNVFAMGV--DRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMIT----------- 131 (360)
T ss_dssp EEETTTCCE----EECCCCCCSEEEEEE--CTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCC-----------
T ss_pred EEECCCCcE----EEeeCCCceEEeeee--cccccc-cceeccccccccccccccceeeeeeccccccc-----------
Confidence 999986543 345578888999999 999996 8899999999999999988877776 556667
Q ss_pred EEeecccceEEEEeeeeeeEEECCCCcEEEEEe----------CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCE
Q 011924 292 RLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG----------DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 361 (475)
Q Consensus 292 ~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----------~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~ 361 (475)
+++|+|+|++|+.+. .++.+++|++.+++.. .+..|...+..++|+|+|++
T Consensus 132 ------------------~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~ 192 (360)
T d1k32a3 132 ------------------DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKN 192 (360)
T ss_dssp ------------------CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCE
T ss_pred ------------------chhhccceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCE
Confidence 899999999998754 3456899999887654 44557788899999999999
Q ss_pred EEEEeCCCeEEEEECCCCC------ceEEEEec------------------------------------CCCceEEEEEc
Q 011924 362 FATGNQDKTCRIWDLRNLS------ESVAVLKG------------------------------------NLGAIRSIRYT 399 (475)
Q Consensus 362 l~t~s~dg~v~iwd~~~~~------~~~~~~~~------------------------------------~~~~v~~l~~s 399 (475)
|++++.++.+++||..... .....+.. ..+....+...
T Consensus 193 l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (360)
T d1k32a3 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 272 (360)
T ss_dssp EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC
T ss_pred EEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeec
Confidence 9999999999999864321 01111110 11122333333
Q ss_pred cCCC-------------EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 400 SDGR-------------YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 400 pdg~-------------~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+++. ++++++.++.|++||+.+++.. .|.+.|.+++|||||++|++++.|+++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIY 339 (360)
T ss_dssp SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEE
T ss_pred CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEE
Confidence 3322 3445556789999999887542 2445699999999999999999998763
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.5e-22 Score=187.87 Aligned_cols=263 Identities=16% Similarity=0.173 Sum_probs=186.0
Q ss_pred eeccc-ceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe
Q 011924 129 LHFQL-RNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG 206 (475)
Q Consensus 129 ~h~~l-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~ 206 (475)
.|... ..+ ++.++..|++. .|+.|++|+..+++....+ .+ +...|.++++.+++|++|+
T Consensus 14 GH~~~V~s~-~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~--~~----------------h~~~V~~v~~~~~~l~s~s 74 (342)
T d2ovrb2 14 GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL--VG----------------HTGGVWSSQMRDNIIISGS 74 (342)
T ss_dssp CSTTSCEEE-EEEETTEEEEEETTSCEEEEETTTCCEEEEC--CC----------------CSSCEEEEEEETTEEEEEE
T ss_pred CcCCceEEE-EEECCCEEEEEeCCCeEEEEECCCCCEEEEE--eC----------------CCCCEEEEEeCCCccccce
Confidence 45543 233 34445666664 5689999998887654432 22 2347899999888999999
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeE--------------------------------------EEEEeCCCCCe
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNA--------------------------------------VEIYGSPSGAV 248 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~--------------------------------------l~~~~s~~g~~ 248 (475)
.||.+++|+.......... ..+...+.. ... .+...
T Consensus 75 ~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 148 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTL---YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGR- 148 (342)
T ss_dssp TTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE--EECSS-
T ss_pred ecccccccccccccceecc---cccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee--ccccc-
Confidence 9999999998754322111 011101000 011 12333
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee-ccc-cEEeccCCceEE------EEEEeecccceEEEEee----eeeeEEECCC
Q 011924 249 HFTASNNDCGVRDFDMGKYQLSKHFR-FPW-PVNVSSSYCIIL------LCRLLNFMTEKVIICLL----CLQHSSQSPD 316 (475)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~-~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~----~i~~~~~sp~ 316 (475)
.+++++.|+.|++|++...+.+..+. +.. ...+++++..++ .+++||...++.+.... .+.++++ +
T Consensus 149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~ 226 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--K 226 (342)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--E
T ss_pred eeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec--C
Confidence 37778889999999998887777665 322 233455555554 58999999988776544 3445554 5
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEeec---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe-----c
Q 011924 317 GKLLIIVGDNPDGLLVDSMTGKTIASLCG---HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK-----G 388 (475)
Q Consensus 317 g~~l~~~~~dg~i~iwd~~~~~~~~~l~~---h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~-----~ 388 (475)
+++|++++.|+.|++||+...+....+.+ |...+.++.+ +++++++|+.||+|+|||+++ ++.++.+. +
T Consensus 227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~t-g~~i~~~~~~~~~~ 303 (342)
T d2ovrb2 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGG 303 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGG
T ss_pred CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCC-CCEEEEEecccCCC
Confidence 67999999999999999999988888875 4455666555 567999999999999999987 77777764 4
Q ss_pred CCCceEEEEEccCCCEEEEEcCCCe----EEEEECCC
Q 011924 389 NLGAIRSIRYTSDGRYMATAEPADF----VHVYDVKS 421 (475)
Q Consensus 389 ~~~~v~~l~~spdg~~la~~~~dg~----i~iwd~~~ 421 (475)
|.+.|++++|+|++.+||+|+.||+ |++||+..
T Consensus 304 ~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 6678999999999999999999885 99999753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-22 Score=185.17 Aligned_cols=248 Identities=13% Similarity=0.193 Sum_probs=181.4
Q ss_pred ecCCCeEEE-ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCC
Q 011924 139 ATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLD 217 (475)
Q Consensus 139 ~~~~~~v~~-~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~ 217 (475)
+.+++.|+. ..|+.|++|+..+++....+. + +...|+++++++++|++|+.||.|++|++.
T Consensus 22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~--~----------------H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 22 QYDDQKIVSGLRDNTIKIWDKNTLECKRILT--G----------------HTGSVLCLQYDERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp ECCSSEEEEEESSSCEEEEESSSCCEEEEEC--C----------------CSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred EEcCCEEEEEeCCCeEEEEECCCCcEEEEEe--c----------------CCCCEeeeecccceeecccccccccccccc
Confidence 345556666 457999999988776655432 2 234799999999999999999999999998
Q ss_pred CCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeee---ee-ccccEE---eccCCceE--
Q 011924 218 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH---FR-FPWPVN---VSSSYCII-- 288 (475)
Q Consensus 218 ~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~---~~-~~~~v~---~s~~~~~l-- 288 (475)
...... ......... ..+ .+.... ++++..++.+++|++........ +. +...+. +.+.....
T Consensus 84 ~~~~~~---~~~~~~~~~--~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 155 (293)
T d1p22a2 84 TGEMLN---TLIHHCEAV--LHL--RFNNGM-MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155 (293)
T ss_dssp SCCEEE---EECCCCSCE--EEE--ECCTTE-EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred cccccc---ccccccccc--ccc--cccccc-eeecccccceeEeeccccccccccccccccccccccceeccccccccc
Confidence 766442 222222222 222 334444 88888999999999976543222 11 333333 12211111
Q ss_pred --EEEEEeecccceEEEEee----eeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEE
Q 011924 289 --LLCRLLNFMTEKVIICLL----CLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 362 (475)
Q Consensus 289 --~~~~v~d~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 362 (475)
..+++||..+++.+.... .+..+ ++++..+++++.|+.|++||+++++.+..+.+|...+.. +++++.+|
T Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l 231 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRI 231 (293)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEE
T ss_pred CCCceeeecCCCCcEEEEEcccccccccc--cCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEE
Confidence 268999999988876654 33344 445678999999999999999999999999999888765 56688999
Q ss_pred EEEeCCCeEEEEECCC--------CCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEE
Q 011924 363 ATGNQDKTCRIWDLRN--------LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 418 (475)
Q Consensus 363 ~t~s~dg~v~iwd~~~--------~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd 418 (475)
++|+.||+|++||++. ...++..+.+|.+.|++++|+ +++|++|+.|++|+|||
T Consensus 232 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 9999999999999742 134688899999999999985 56899999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=9.3e-22 Score=187.96 Aligned_cols=223 Identities=12% Similarity=0.042 Sum_probs=177.9
Q ss_pred EEEEEE-cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-eEEEEECCCCee
Q 011924 192 VSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGKYQL 269 (475)
Q Consensus 192 v~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-~v~iwd~~~~~~ 269 (475)
...+++ +|+++++++ .|+|++|++...... ++ .|...|.+++| +|+|+.+++++..++ .|++||+.+++.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~---~~--~~~~~v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---KV--PEPLRIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---EC--SCCSCEEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE---Ec--cCCCCEEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence 467788 899998875 689999999754332 32 57888999999 999998555555543 799999999888
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF 349 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~ 349 (475)
.....+...+. +++|+|+|++|++++.++.+++|++.+++....+..|...
T Consensus 79 ~~~~~~~~~v~-----------------------------~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (360)
T d1k32a3 79 EKFEENLGNVF-----------------------------AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129 (360)
T ss_dssp EECCCCCCSEE-----------------------------EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred EEeeCCCceEE-----------------------------eeeecccccccceeccccccccccccccceeeeeeccccc
Confidence 77777888899 9999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEe----------CCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEEC
Q 011924 350 SFASAWHPNGVTFATGN----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 419 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s----------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~ 419 (475)
+.+++|+|+|++|+.+. .++.+++||+.. + ....+..+...+..++|+|+|++|++++.++.+.+|+.
T Consensus 130 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-~-~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-R-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-T-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ccchhhccceeeeeeeccccccceeeccccceeeecccc-C-ceeeecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence 99999999999998654 345799999975 3 34455566778889999999999999999999999997
Q ss_pred CCCe-------eEEEEeccCCCeEEEEEcCCCCeEEEEEec
Q 011924 420 KSGY-------EKEQEIDFFGEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 420 ~~~~-------~~~~~~~~~~~i~~l~fspdg~~l~~~~~D 453 (475)
.... ....+..+...+..+.|+|++..++++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 248 (360)
T d1k32a3 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248 (360)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCC
T ss_pred cccceeeccccceEEEecccCccccceECCCcCccccccee
Confidence 6532 233334455556666777777766655433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=7.1e-20 Score=180.41 Aligned_cols=283 Identities=11% Similarity=0.038 Sum_probs=194.9
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEe
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 226 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~ 226 (475)
.++.|.+|+..+++....+... ..+..++| +|++|++++.||.|++||+.+.+......
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~~g-------------------~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVIDTG-------------------YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEECC-------------------SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEeCC-------------------CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence 5699999999998876665431 13556677 99999999999999999998776543222
Q ss_pred --eecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc----c-----------cEEeccCCceEE
Q 011924 227 --TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP----W-----------PVNVSSSYCIIL 289 (475)
Q Consensus 227 --~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~-----------~v~~s~~~~~l~ 289 (475)
....|...+.+++| +|+|+++++++..++++++||..++.++...... . .+.+++++..+.
T Consensus 101 i~~~~~~~~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~ 178 (426)
T d1hzua2 101 IKIGIEARSVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178 (426)
T ss_dssp EECCSEEEEEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EeCCCCCcceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence 22334444555555 8999987788889999999999998877655411 1 122334443332
Q ss_pred -------EEEEeecccce-----EEEEeeeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceEEEeec--CCCCeEEEE
Q 011924 290 -------LCRLLNFMTEK-----VIICLLCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCG--HLDFSFASA 354 (475)
Q Consensus 290 -------~~~v~d~~~~~-----~~~~~~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~ 354 (475)
.+.+++..... .+.....+..++|+|++++++++. .+..+.+++..+++.+..... +........
T Consensus 179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
T d1hzua2 179 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258 (426)
T ss_dssp EEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred EecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence 12222222221 111222556899999999888876 456788999999998877653 222333444
Q ss_pred EecCCC-EE--EEEeCCCeEEEEECCCC------CceEEEEecCCCceEEEEEccCCCEEEE-------EcCCCeEEEEE
Q 011924 355 WHPNGV-TF--ATGNQDKTCRIWDLRNL------SESVAVLKGNLGAIRSIRYTSDGRYMAT-------AEPADFVHVYD 418 (475)
Q Consensus 355 ~sp~g~-~l--~t~s~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~spdg~~la~-------~~~dg~i~iwd 418 (475)
+.+.+. .+ ++.+.++.+.+|+.... .+....+.+|...+..++|+|+|++|++ ++.+++|+|||
T Consensus 259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 444332 22 23345788888887532 3678889999999999999999999995 44578999999
Q ss_pred CCCCeeEEEEe---------ccCCCeEEEEEcCCCCeEEEEEe
Q 011924 419 VKSGYEKEQEI---------DFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 419 ~~~~~~~~~~~---------~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
+++++...++. .+...+..++|||||++|+++++
T Consensus 339 ~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~ 381 (426)
T d1hzua2 339 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 381 (426)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEEC
T ss_pred CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEe
Confidence 99987766553 34567999999999998876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=1.8e-18 Score=160.47 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=189.9
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 225 (475)
.++.|.+|+..+++....+.+.+ .+..+++ +|++| ++++.++.|++||+.+....
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g~-------------------~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--- 67 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVGS-------------------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--- 67 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE---
T ss_pred CCCEEEEEECCCCeEEEEEECCC-------------------CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee---
Confidence 56889999999887666554321 2345666 88876 56778999999999876544
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
.....+. ....+.+ ++++..+++++..++.+.+|+..+++....+.......
T Consensus 68 ~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 119 (301)
T d1l0qa2 68 ATVPAGS-SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL------------------------- 119 (301)
T ss_dssp EEEECSS-SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-------------------------
T ss_pred eeeeccc-ccccccc--ccccccccccccccceeeecccccceeeeeccccccce-------------------------
Confidence 3333333 3567777 99999878888889999999999999988888777777
Q ss_pred eeeeeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCCceE
Q 011924 306 LCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIWDLRNLSESV 383 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~d-g~v~iwd~~~~~~~~ 383 (475)
+++++|+|+.++++ ..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +.+.+|+... ....
T Consensus 120 ----~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 193 (301)
T d1l0qa2 120 ----GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVI 193 (301)
T ss_dssp ----EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred ----EEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccc-eeee
Confidence 89999999987655 46778999999999988888744 568889999999988888765 5677777754 5555
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 384 AVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 384 ~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
..+..+ ..+..++|+++|+.++++.. ++.|++||+.+++.+..+. +...+.+++|||||++|++++.
T Consensus 194 ~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~ 263 (301)
T d1l0qa2 194 DTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALS 263 (301)
T ss_dssp EEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEET
T ss_pred eccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEEC
Confidence 555544 46778999999998876543 4689999999998877655 4567899999999999875543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=3.8e-21 Score=181.01 Aligned_cols=264 Identities=8% Similarity=-0.028 Sum_probs=178.0
Q ss_pred cceeEEecCCCeEEEe-cCCeEEEEecCCCCceEEE-eccCCCCCCCCCCCCccccccceeEEEEEE---cCcEEEEEec
Q 011924 133 LRNLVWATSKHDVYLM-SHFSVIHWSSLTSSRSQVL-NVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGF 207 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~lvsg~~ 207 (475)
...+.|+++...|+.. .|+.|++|+..++.....+ ... .+..+|.+++| .+.+|++|+.
T Consensus 14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~----------------~h~~~V~~v~f~~~~~~~l~sg~~ 77 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----------------RYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----------------ECSSCEEEEEEEESSSEEEEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec----------------CCCCCEEEEEEeCCCCCEEEEccc
Confidence 4556688888777775 5799999997665443222 111 13347999999 3568999999
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----------ccc
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----------FPW 277 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~----------~~~ 277 (475)
||.|++|++....... .....+........+ .+++. .+++++.++++++||++.+....... ...
T Consensus 78 d~~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T d1yfqa_ 78 QGEILKVDLIGSPSFQ--ALTNNEANLGICRIC--KYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp TSCEEEECSSSSSSEE--ECBSCCCCSCEEEEE--EETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred ccceeeeecccccccc--ccccccccccccccc--ccccc-cccccccccccceeeccccccceeeecccccccccceee
Confidence 9999999998766552 222233333333333 44555 48899999999999986533222111 011
Q ss_pred cEEeccCCceEE------EEEEeecccceEEEEee-------eeeeEEEC-CCCcEEEEEeCCCcEEEEECCCCceE---
Q 011924 278 PVNVSSSYCIIL------LCRLLNFMTEKVIICLL-------CLQHSSQS-PDGKLLIIVGDNPDGLLVDSMTGKTI--- 340 (475)
Q Consensus 278 ~v~~s~~~~~l~------~~~v~d~~~~~~~~~~~-------~i~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~~~--- 340 (475)
...+.+.+..+. .+++|++.......... .+.+..+. +++..+++++.+|.+.+|+.......
T Consensus 153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~ 232 (342)
T d1yfqa_ 153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred eeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence 122333333332 57899886543321111 23344544 47889999999999999997643211
Q ss_pred ---EE---------eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE
Q 011924 341 ---AS---------LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 408 (475)
Q Consensus 341 ---~~---------l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~ 408 (475)
.. ..+|...+.+++|+|++++||||+.||+|+|||+++ ++.+..+..+ ..+..++|+|+|++|++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~-~~~l~~~~~~-~~~~~~~~s~~~~~l~~a 310 (342)
T d1yfqa_ 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKF-NEDSVVKIACSDNILCLA 310 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCC-SSSEEEEEEECSSEEEEE
T ss_pred cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC-CcEEEEecCC-CCCEEEEEEeCCCEEEEE
Confidence 11 134667899999999999999999999999999987 6777777543 345678899999999999
Q ss_pred cCCCeEEEEEC
Q 011924 409 EPADFVHVYDV 419 (475)
Q Consensus 409 ~~dg~i~iwd~ 419 (475)
+.|+.+++|..
T Consensus 311 ~sdd~~~~~~~ 321 (342)
T d1yfqa_ 311 TSDDTFKTNAA 321 (342)
T ss_dssp EECTHHHHCSS
T ss_pred EcCCcEEEeee
Confidence 99998888864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.1e-19 Score=171.36 Aligned_cols=248 Identities=11% Similarity=0.029 Sum_probs=184.6
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-----
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----- 274 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~----- 274 (475)
++|++++.+++|.+||+.+.+..... ....+...+.+++| +|+|+.++++++.++.|.+||+.+++.+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~--spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999876644221 22334455678888 99999877888889999999999998877664
Q ss_pred ----ccccEEeccCCceEE------------------EEEEeecccceEEEEee---eeeeEEECCCCcEEEEEeCCCcE
Q 011924 275 ----FPWPVNVSSSYCIIL------------------LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLLIIVGDNPDG 329 (475)
Q Consensus 275 ----~~~~v~~s~~~~~l~------------------~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l~~~~~dg~i 329 (475)
....+.|+|++..+. .+.+||..+++...... .+.+++|+|+|+++++++. .+
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~ 156 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DL 156 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SE
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Cc
Confidence 245677999988774 35678888877765544 5678999999999998864 57
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEEecCC------------------------CEEEEEeCCCeEEEEECCCCCceEEE
Q 011924 330 LLVDSMTGKTIASLCGHLDFSFASAWHPNG------------------------VTFATGNQDKTCRIWDLRNLSESVAV 385 (475)
Q Consensus 330 ~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g------------------------~~l~t~s~dg~v~iwd~~~~~~~~~~ 385 (475)
.+||..+++....+..+... ....++|++ ..+..++.++.+.+||..........
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 157 HVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred ceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 88999999888877643221 111122221 11122233456999999774444455
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
+..+...+..++++|++.+++.+ ++.|++||+++++.+..+. +...+.+++|+|||++|++++.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i 303 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 66677788899999999998876 4789999999998887764 56788999999999999999888764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=2.6e-20 Score=183.91 Aligned_cols=280 Identities=11% Similarity=0.021 Sum_probs=185.5
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCceEEEEeCCCCCceE--
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSF-- 223 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~-- 223 (475)
..+++|.+|+..+++....++.. ..+..++| +|++|++++.+|.|.+||+.+.+...
T Consensus 39 ~d~g~v~v~D~~t~~v~~~~~~g-------------------~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~ 99 (432)
T d1qksa2 39 RDAGQIALIDGSTYEIKTVLDTG-------------------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99 (432)
T ss_dssp TTTTEEEEEETTTCCEEEEEECS-------------------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCC-------------------CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE
Confidence 35689999999999887766532 13566677 99999999999999999998766432
Q ss_pred EEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec---------------cccEEeccCCceE
Q 011924 224 CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF---------------PWPVNVSSSYCII 288 (475)
Q Consensus 224 ~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---------------~~~v~~s~~~~~l 288 (475)
.......|.+.+.+..| +|+|+.++++++.+++|++||..+++++..+.. ...+.+++++..+
T Consensus 100 ~i~~~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~ 177 (432)
T d1qksa2 100 EIKIGSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 177 (432)
T ss_dssp EEECCSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred EEecCCCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence 22333345455555555 899998788999999999999999988776541 1124567777665
Q ss_pred E-------EEEEeecccceEEEE-----eeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEEeec-----CCCCe
Q 011924 289 L-------LCRLLNFMTEKVIIC-----LLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCG-----HLDFS 350 (475)
Q Consensus 289 ~-------~~~v~d~~~~~~~~~-----~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~l~~-----h~~~v 350 (475)
. .+.+|+...++.... ...+..++|+|+|+++++++. +..+.++|..+++.+..+.. |....
T Consensus 178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~ 257 (432)
T d1qksa2 178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257 (432)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred EEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcc
Confidence 3 467888776554322 225678999999998877764 55788999988887766542 33334
Q ss_pred EEEEEecCCCEEEEEe-CCCeEEEEECCCCC------ceEEEEecCCCc-------------------------eEEEEE
Q 011924 351 FASAWHPNGVTFATGN-QDKTCRIWDLRNLS------ESVAVLKGNLGA-------------------------IRSIRY 398 (475)
Q Consensus 351 ~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~------~~~~~~~~~~~~-------------------------v~~l~~ 398 (475)
....+.+.+...++.. .+++|.+|+..... +....+..+.+. ..++++
T Consensus 258 ~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v 337 (432)
T d1qksa2 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV 337 (432)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred cceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE
Confidence 4444444444444443 36778888764311 122222221111 112333
Q ss_pred ccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEe
Q 011924 399 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 399 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
||++.|++++.|+.+++|++.++.. +..|.+.+..++|||||++|++++|
T Consensus 338 -pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~ 387 (432)
T d1qksa2 338 -FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVW 387 (432)
T ss_dssp -EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred -EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEe
Confidence 6666666677777777777654422 2246677899999999999988776
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=3.7e-19 Score=168.50 Aligned_cols=249 Identities=12% Similarity=0.048 Sum_probs=182.5
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--- 274 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--- 274 (475)
++++|++++.+++|.+||+.+.+... .....+.....+++| +|+|+.++++++.++.|.+||+.+++.+..+.
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~~~--t~~~~~~~~p~~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEE--EEECSSCCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCcEEEEEcCCCEEEEEECCCCCEEE--EEEcCCCCCcceEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence 78899999999999999998765442 222344555678988 99999877888899999999999998876654
Q ss_pred -------ccccEEeccCCceEE------------------EEEEeecccceEEEEe------eeeeeEEECCCCcEEEEE
Q 011924 275 -------FPWPVNVSSSYCIIL------------------LCRLLNFMTEKVIICL------LCLQHSSQSPDGKLLIIV 323 (475)
Q Consensus 275 -------~~~~v~~s~~~~~l~------------------~~~v~d~~~~~~~~~~------~~i~~~~~sp~g~~l~~~ 323 (475)
.+..+.|++++..+. .+.+|+..+++..... ..+..+.+++++.+++++
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC
Confidence 245677999998774 2456777665433221 134466777777766543
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCC--------------------------EEEEEeCCCeEEEEECC
Q 011924 324 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV--------------------------TFATGNQDKTCRIWDLR 377 (475)
Q Consensus 324 ~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~--------------------------~l~t~s~dg~v~iwd~~ 377 (475)
..+.+|++.+++.+..+..+. ....+.++|++. .++++..++.+.+||+.
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
T d1jmxb_ 163 ---PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238 (346)
T ss_dssp ---SSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ---CcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence 458999999999888876443 233344444433 23344455678889987
Q ss_pred CCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 378 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
...........+...+..+.++|++.+++.+.. +.|.+||+.+++.+..+. +...+.+++|||||++|++++.|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v 315 (346)
T d1jmxb_ 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDL 315 (346)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred CCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 755555566677788889999999888877664 579999999998877664 45679999999999999999888654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.82 E-value=5.1e-18 Score=166.92 Aligned_cols=297 Identities=11% Similarity=0.002 Sum_probs=195.8
Q ss_pred eecccceeEEecCCCeEEEec-CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEE-E
Q 011924 129 LHFQLRNLVWATSKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV-A 204 (475)
Q Consensus 129 ~h~~lr~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lv-s 204 (475)
.|...+.+.+++++..+|..+ ++.+.+|+..+++...+..+... ..+...+.+++| +|++|+ +
T Consensus 60 ~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~-------------~~~~~~~~s~~~spDG~~l~v~ 126 (426)
T d1hzua2 60 TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-------------IEARSVESSKFKGYEDRYTIAG 126 (426)
T ss_dssp CCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-------------SEEEEEEECCSTTCTTTEEEEE
T ss_pred CCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC-------------CCCcceEEeeeecCCCCEEEEe
Confidence 455667788999999998865 68999999988876555443210 011223444444 788765 5
Q ss_pred EecCceEEEEeCCCCCceEEEee--------ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee--eeee
Q 011924 205 GGFQGELICKHLDRPGVSFCSRT--------TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS--KHFR 274 (475)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~--------~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~--~~~~ 274 (475)
+..++.+.+|+............ ...+.+....+.. ++++..++++....+.+.+++....... ..+.
T Consensus 127 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 204 (426)
T d1hzua2 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204 (426)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE
T ss_pred ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEE--CCCCCEEEEecCCCCeEEEEEeccccceeeEEec
Confidence 56889999999887664422111 0112233344555 7777775555556667777776554322 2222
Q ss_pred ---ccccEEeccCCceEE-------EEEEeecccceEEEEee------eeeeEEECCCC-cEEE--EEeCCCcEEEEECC
Q 011924 275 ---FPWPVNVSSSYCIIL-------LCRLLNFMTEKVIICLL------CLQHSSQSPDG-KLLI--IVGDNPDGLLVDSM 335 (475)
Q Consensus 275 ---~~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~~~------~i~~~~~sp~g-~~l~--~~~~dg~i~iwd~~ 335 (475)
.+..+.|++++..+. .+.+++..+++...... ......+.+.+ ..+. ..+.++.+.+|+..
T Consensus 205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~ 284 (426)
T d1hzua2 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 284 (426)
T ss_dssp CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence 345677899988774 46788888888765443 11223332222 2222 22356777777765
Q ss_pred C-------CceEEEeecCCCCeEEEEEecCCCEEEE-------EeCCCeEEEEECCCCCceEEEE---------ecCCCc
Q 011924 336 T-------GKTIASLCGHLDFSFASAWHPNGVTFAT-------GNQDKTCRIWDLRNLSESVAVL---------KGNLGA 392 (475)
Q Consensus 336 ~-------~~~~~~l~~h~~~v~~~~~sp~g~~l~t-------~s~dg~v~iwd~~~~~~~~~~~---------~~~~~~ 392 (475)
. ++....+.+|...+..++|+|++++|++ ++.+++|+|||+++ .+...++ ..+...
T Consensus 285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~~~~~~~r 363 (426)
T d1hzua2 285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKR 363 (426)
T ss_dssp TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCC
T ss_pred ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcccCCCCcc
Confidence 3 4778899999999999999999999995 45678999999987 4444333 234556
Q ss_pred eEEEEEccCCCEEEEE-----cCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeE
Q 011924 393 IRSIRYTSDGRYMATA-----EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 447 (475)
Q Consensus 393 v~~l~~spdg~~la~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l 447 (475)
|.+++|||||++|+.+ +.++.|+|||.++++....+.++. .++|+|+|-
T Consensus 364 v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 8899999999977543 357889999999999887777654 346777663
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.2e-17 Score=157.14 Aligned_cols=274 Identities=12% Similarity=0.004 Sum_probs=190.1
Q ss_pred ecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEEeCCCCCceEE
Q 011924 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFC 224 (475)
Q Consensus 148 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~ 224 (475)
..+++|.+|+..+++....+...+. ...+.++++ +|++| ++++.+|.|.+||+.+.+....
T Consensus 8 ~~d~~v~v~D~~s~~~~~~i~~~~~----------------~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 8 ARPDKLVVIDTEKMAVDKVITIADA----------------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTC----------------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEECCCC----------------CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 4568999999998877666554321 012234555 88877 5677899999999998765532
Q ss_pred EeeecC--CCCceeEEEEEeCCCCCeEEEEEe-----------CCCeEEEEECCCCeeeeeeec---cccEEeccCCceE
Q 011924 225 SRTTYD--DNAITNAVEIYGSPSGAVHFTASN-----------NDCGVRDFDMGKYQLSKHFRF---PWPVNVSSSYCII 288 (475)
Q Consensus 225 ~~~~~~--~~~~v~~l~~~~s~~g~~~l~s~s-----------~dg~v~iwd~~~~~~~~~~~~---~~~v~~s~~~~~l 288 (475)
...... +...+..+++ +|+++.++++.. .+..+.+||..+++....+.. +..+.|++++..+
T Consensus 72 ~~~~~~~~~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 149 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKL 149 (337)
T ss_dssp EECCBTTEEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCE
T ss_pred EecCCCcccccceeeEEE--cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEE
Confidence 222111 1123456777 999998444432 467899999999998887763 4467799999888
Q ss_pred E----EEEEeecccceEEEEeee---eeeEEECCCCcEE------------------------EEEeCCCcEEEEECCCC
Q 011924 289 L----LCRLLNFMTEKVIICLLC---LQHSSQSPDGKLL------------------------IIVGDNPDGLLVDSMTG 337 (475)
Q Consensus 289 ~----~~~v~d~~~~~~~~~~~~---i~~~~~sp~g~~l------------------------~~~~~dg~i~iwd~~~~ 337 (475)
. ...+||..+++....... .....++|++..+ ..+..++.+.+|+..++
T Consensus 150 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (337)
T d1pbyb_ 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp EEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence 5 467899988877665431 1111222222111 11122346889999888
Q ss_pred ceEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEE
Q 011924 338 KTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV 416 (475)
Q Consensus 338 ~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~i 416 (475)
.... .+..+...+..++++|++.+++++ ++.|++||+.+ ++.+..+. +...+.+++|+|||++|++++.++.|+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v 305 (337)
T d1pbyb_ 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred cEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 7654 345677888999999999988876 47899999987 67777765 4557889999999999999999999999
Q ss_pred EECCCCeeEEEEeccCC----CeEEEEEcCC
Q 011924 417 YDVKSGYEKEQEIDFFG----EISGISFSPD 443 (475)
Q Consensus 417 wd~~~~~~~~~~~~~~~----~i~~l~fspd 443 (475)
||+++++.+.++....+ -.....|++|
T Consensus 306 ~D~~t~~~v~~i~~~g~~~~~~~~~~~~~~~ 336 (337)
T d1pbyb_ 306 YDAETLEKKGQVDLPGNASMSLASVRLFTRD 336 (337)
T ss_dssp EETTTCCEEEEEECGGGCCCBTCCCEEEECC
T ss_pred EECCCCcEEEEEECCCCCccceeeeeEEcCC
Confidence 99999998888764332 2334446654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=1.5e-16 Score=147.29 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=171.8
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEe
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNV 281 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~ 281 (475)
.|+++.+++|.+||+.+.+... .... ......++| +|+|++++++++.++.|++||+.+++.+..+.....+.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~---~i~~-g~~p~~va~--spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~- 77 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTA---TIPV-GSNPMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ- 77 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEE---EEEC-SSSEEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-
T ss_pred EEEECCCCEEEEEECCCCeEEE---EEEC-CCCceEEEE--eCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-
Confidence 4567889999999998776442 2222 234577888 99999877888899999999999999998888666667
Q ss_pred ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCC
Q 011924 282 SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV 360 (475)
Q Consensus 282 s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~ 360 (475)
.++|++++..++++ ..++.+.+|+..+++....+..+ ....+++|+|+++
T Consensus 78 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~ 128 (301)
T d1l0qa2 78 ----------------------------GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK 128 (301)
T ss_dssp ----------------------------EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS
T ss_pred ----------------------------ccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCC
Confidence 89999999876655 46778999999999988888754 5678899999998
Q ss_pred EEEE-EeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCC-CeEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 361 TFAT-GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-DFVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 361 ~l~t-~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
.++. +..++++.+|+..+ ...+..+..+ ..+..++++|+++.++++..+ +.+.+|+.......... .....+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 205 (301)
T d1l0qa2 129 KLYVTNNGDKTVSVINTVT-KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-KVEAAPSGI 205 (301)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSEEEEE
T ss_pred eeeeeeccccceeeeeccc-cceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecc-cccCCccee
Confidence 7764 55688999999976 6667666654 457899999999988877665 67788887766555444 445668899
Q ss_pred EEcCCCCeEEEEEecCCcceEEE
Q 011924 439 SFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
+|++++..++++..|...+.+..
T Consensus 206 ~~~~~g~~~~v~~~~~~~~~v~v 228 (301)
T d1l0qa2 206 AVNPEGTKAYVTNVDKYFNTVSM 228 (301)
T ss_dssp EECTTSSEEEEEEECSSCCEEEE
T ss_pred eccccccccccccccceeeeeee
Confidence 99999999998877765544433
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=4.2e-18 Score=167.80 Aligned_cols=180 Identities=10% Similarity=0.025 Sum_probs=144.4
Q ss_pred eEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCC
Q 011924 248 VHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNP 327 (475)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg 327 (475)
.++++.+.+|+|.+||+.+++++..+.....+. .++|||||+++++++.|+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-----------------------------~v~fSpDG~~l~~~s~dg 83 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-----------------------------ISRLSASGRYLFVIGRDG 83 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-----------------------------EEEECTTSCEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-----------------------------EEEECCCCCEEEEEcCCC
Confidence 446889999999999999999999998666788 999999999999999999
Q ss_pred cEEEEECCCCce--EEEee---cCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCCceEEEEecC-----------C
Q 011924 328 DGLLVDSMTGKT--IASLC---GHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRNLSESVAVLKGN-----------L 390 (475)
Q Consensus 328 ~i~iwd~~~~~~--~~~l~---~h~~~v~~~~~sp~g~~l-~t~s~dg~v~iwd~~~~~~~~~~~~~~-----------~ 390 (475)
.+.+||+.+++. +..+. +|.+.+.+.+|+|||++| ++++.+++|+|||..+ ++++..+..+ .
T Consensus 84 ~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
T d1qksa2 84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPE 162 (432)
T ss_dssp EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESC
T ss_pred CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-ccceeeeccCCccccceeccCC
Confidence 999999988764 33333 455666777788899976 6788899999999976 7777766543 3
Q ss_pred CceEEEEEccCCCEE-EEEcCCCeEEEEECCCCeeEEEE-eccCCCeEEEEEcCCCCeEEEEEecCCcc
Q 011924 391 GAIRSIRYTSDGRYM-ATAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYG 457 (475)
Q Consensus 391 ~~v~~l~~spdg~~l-a~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~fspdg~~l~~~~~D~~~~ 457 (475)
+....+.++|+|+.+ ++...++.|.+||..+++..... ..+...+.+++|+|+|+++++++.++...
T Consensus 163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v 231 (432)
T d1qksa2 163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL 231 (432)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceE
Confidence 455678999999865 55667899999999887654433 34556789999999999999998776543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=2e-16 Score=149.26 Aligned_cols=274 Identities=12% Similarity=0.077 Sum_probs=185.5
Q ss_pred ecCCCeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEE-EEEecCceEEEE
Q 011924 139 ATSKHDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICK 214 (475)
Q Consensus 139 ~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l-vsg~~dg~i~vw 214 (475)
+.+...+++. .+++|.+|+..+++....+.+.+. ..+.++++ +|+++ +++..++.|++|
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-----------------~~p~~l~~spDG~~l~v~~~~~~~v~~~ 67 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPDNRTAYVLNNHYGDIYGI 67 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-----------------CCcceEEECCCCCEEEEEECCCCcEEEE
Confidence 3444555554 568999999998877665543211 12345666 88876 566688999999
Q ss_pred eCCCCCceEEEeeecCC---CCceeEEEEEeCCCCCeEEEEE-----------eCCCeEEEEECCCCeeeeeee---c--
Q 011924 215 HLDRPGVSFCSRTTYDD---NAITNAVEIYGSPSGAVHFTAS-----------NNDCGVRDFDMGKYQLSKHFR---F-- 275 (475)
Q Consensus 215 ~~~~~~~~~~~~~~~~~---~~~v~~l~~~~s~~g~~~l~s~-----------s~dg~v~iwd~~~~~~~~~~~---~-- 275 (475)
|+.+............. ...+..+++ +|+|+.++++. ..++.+.+|+..+++....+. .
T Consensus 68 d~~t~~~~~~~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 145 (346)
T d1jmxb_ 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145 (346)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred eCccCeeeeeecccccccccCCceEEEEE--ecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence 99876654322221111 112456777 99999855543 257889999988766544332 1
Q ss_pred -cccEEeccCCceEE---EEEEeecccceEEEEee---eeeeEEECCCCcEE--------------------------EE
Q 011924 276 -PWPVNVSSSYCIIL---LCRLLNFMTEKVIICLL---CLQHSSQSPDGKLL--------------------------II 322 (475)
Q Consensus 276 -~~~v~~s~~~~~l~---~~~v~d~~~~~~~~~~~---~i~~~~~sp~g~~l--------------------------~~ 322 (475)
...+.+++.+..+. .+.+|+..+++...... ....+.++|++..+ ++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
T d1jmxb_ 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225 (346)
T ss_dssp SCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred ceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEee
Confidence 22333455554443 46788888877766543 23344455554332 22
Q ss_pred EeCCCcEEEEECCCCceEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccC
Q 011924 323 VGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 401 (475)
Q Consensus 323 ~~~dg~i~iwd~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spd 401 (475)
+.....+.+|++.++.... .+..|...+.++.++|++.+++.... +.|.+||..+ ++.+..+.. ...+.+++|+||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~-~~~~~~~~~-~~~~~~va~s~D 302 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQ-RKLIKAANL-DHTYYCVAFDKK 302 (346)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTT-TEEEEEEEC-SSCCCEEEECSS
T ss_pred ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCC-CcEEEEEcC-CCCEEEEEEcCC
Confidence 3344567889988877554 34568888999999998888887764 5799999976 677776653 457889999999
Q ss_pred CCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC
Q 011924 402 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 434 (475)
Q Consensus 402 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 434 (475)
|++|++++.++.|+|||+++++.+..+....+.
T Consensus 303 G~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 303 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 999999999999999999999999888765543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.6e-15 Score=140.03 Aligned_cols=259 Identities=13% Similarity=0.094 Sum_probs=171.9
Q ss_pred cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe-cCceEEEEeCCCCCceEEE
Q 011924 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-FQGELICKHLDRPGVSFCS 225 (475)
Q Consensus 149 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~-~dg~i~vw~~~~~~~~~~~ 225 (475)
.+++|.+|+..+.....++...+ +...+..|++ +|++|++++ .++.|++|++.........
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~~----------------~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~ 75 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVVD----------------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF 75 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEE----------------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCcEEEEEEcCCCCeEEEEEEc----------------CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 45889999976554433332211 1124556666 899886554 5899999999876544322
Q ss_pred eeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee---ccccEEeccCCceEEEEEEeecccceEE
Q 011924 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNVSSSYCIILLCRLLNFMTEKVI 302 (475)
Q Consensus 226 ~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~ 302 (475)
.....+...+..++| +|+|+++++++..++.|.+|+........... +...+.
T Consensus 76 ~~~~~~~~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 131 (333)
T d1ri6a_ 76 AAESALPGSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH---------------------- 131 (333)
T ss_dssp EEEEECSSCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC----------------------
T ss_pred eeecccCCCceEEEE--cCCCCEEeecccCCCceeeeccccccceecccccCCCccce----------------------
Confidence 333334445677888 99999856555568899999887655444332 444555
Q ss_pred EEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEEEe------ecCCCCeEEEEEecCCCEEEEEe-CCCeEEEE
Q 011924 303 ICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASL------CGHLDFSFASAWHPNGVTFATGN-QDKTCRIW 374 (475)
Q Consensus 303 ~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~l------~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iw 374 (475)
++.++|+++.+++++. +..+.+|+.......... .........++|++++.+++... ..+...+|
T Consensus 132 -------~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~ 204 (333)
T d1ri6a_ 132 -------SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW 204 (333)
T ss_dssp -------CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -------EEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEE
Confidence 8899999999888764 457889998765432211 12445678899999998887665 45678888
Q ss_pred ECCCCCceE---EEEec------CCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEE---eccCCCeEEEEEc
Q 011924 375 DLRNLSESV---AVLKG------NLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQE---IDFFGEISGISFS 441 (475)
Q Consensus 375 d~~~~~~~~---~~~~~------~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~fs 441 (475)
+........ ..+.. .......++++|++++++.+ ..++.+.+|++......... ....+.+.+++||
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~s 284 (333)
T d1ri6a_ 205 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVD 284 (333)
T ss_dssp ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEEC
T ss_pred eecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEe
Confidence 875432222 22211 22456778999999876655 55789999998754433222 2344678899999
Q ss_pred CCCCeEEEEEecC
Q 011924 442 PDTESLFIGVWDR 454 (475)
Q Consensus 442 pdg~~l~~~~~D~ 454 (475)
|||++|++++.+.
T Consensus 285 pDGk~l~va~~~~ 297 (333)
T d1ri6a_ 285 HSGKYLIAAGQKS 297 (333)
T ss_dssp TTSSEEEEECTTT
T ss_pred CCCCEEEEEECCC
Confidence 9999999886554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=8.4e-15 Score=139.01 Aligned_cols=283 Identities=10% Similarity=-0.025 Sum_probs=182.7
Q ss_pred ecCCCeEEEec------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEE-------
Q 011924 139 ATSKHDVYLMS------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAG------- 205 (475)
Q Consensus 139 ~~~~~~v~~~~------~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg------- 205 (475)
+++...+|... ...+.+|+..+++....+.... .+-.+++.+|++|++.
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~------------------~~~~a~SpDg~~l~v~~~~~~~~ 71 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF------------------LPNPVVADDGSFIAHASTVFSRI 71 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS------------------SCEEEECTTSSCEEEEEEEEEET
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC------------------CCceEEcCCCCEEEEEeCCCccc
Confidence 45666676642 3569999998887655443210 0112344488877653
Q ss_pred ---ecCceEEEEeCCCCCceEEEeeecCCC----CceeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCeeeeeeeccc
Q 011924 206 ---GFQGELICKHLDRPGVSFCSRTTYDDN----AITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFRFPW 277 (475)
Q Consensus 206 ---~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~ 277 (475)
..+|.|++||+.+.+..........+. .....+.| +|+|+.+++.. +.+..+.+|+..+++.+..+..+.
T Consensus 72 ~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d2bbkh_ 72 ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 149 (355)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred cccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE--ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence 457899999998876553333222221 12345677 99999744433 456789999999998877665322
Q ss_pred -----------cEEeccCCceEEE-------EEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCce
Q 011924 278 -----------PVNVSSSYCIILL-------CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 339 (475)
Q Consensus 278 -----------~v~~s~~~~~l~~-------~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 339 (475)
.+.+++++..+.. +.+++....... ....+....+++++..++.++.++.+++|++..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 228 (355)
T d2bbkh_ 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228 (355)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE
Confidence 2345555554421 111111111000 000234567788888899999999999999987754
Q ss_pred EE--EeecCC----------CCeEEEEEecCCCEEEEEeCC----------CeEEEEECCCCCceEEEEecCCCceEEEE
Q 011924 340 IA--SLCGHL----------DFSFASAWHPNGVTFATGNQD----------KTCRIWDLRNLSESVAVLKGNLGAIRSIR 397 (475)
Q Consensus 340 ~~--~l~~h~----------~~v~~~~~sp~g~~l~t~s~d----------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~ 397 (475)
.. ...++. .....++++|++..++..+.+ ..|.+||..+ ++.+..+... ..+.+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~-~~~~~~a 306 (355)
T d2bbkh_ 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMG-HEIDSIN 306 (355)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEE-EEECEEE
T ss_pred EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCC-CCEEEEE
Confidence 22 122221 223458899999988876543 3799999987 6777766643 4678999
Q ss_pred EccCCC--EEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 398 YTSDGR--YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 398 ~spdg~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
|+|||+ ++++++.++.|+|||+++++.+..+..+......+.+.++|
T Consensus 307 ~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 999997 45677789999999999999998887776666777666554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.68 E-value=2.6e-13 Score=129.62 Aligned_cols=285 Identities=9% Similarity=-0.063 Sum_probs=190.8
Q ss_pred cceeEEecCCCeEEEec------CCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe
Q 011924 133 LRNLVWATSKHDVYLMS------HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG 206 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~~------~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~ 206 (475)
.+.+.++++...++... ...+.+|+..+++....+... . .+-..++.+|++|++++
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~--~----------------~~~~a~SpDG~~l~va~ 84 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--F----------------LPNPVAAHSGSEFALAS 84 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC--C----------------CccEEEcCCCCEEEEEe
Confidence 34455777788887742 256889998888765544321 0 01123444888877764
Q ss_pred ----------cCceEEEEeCCCCCceEEEeeecCCCCc-------eeEEEEEeCCCCCeEEEEE-eCCCeEEEEECCCCe
Q 011924 207 ----------FQGELICKHLDRPGVSFCSRTTYDDNAI-------TNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQ 268 (475)
Q Consensus 207 ----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~-------v~~l~~~~s~~g~~~l~s~-s~dg~v~iwd~~~~~ 268 (475)
.++.|.+||+.+.+..... ..+... ...+.| +++++.+++.. ..++.+.+|+....+
T Consensus 85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~---~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~ 159 (373)
T d2madh_ 85 TSFSRIAKGKRTDYVEVFDPVTFLPIADI---ELPDAPRFDVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVVQGGSS 159 (373)
T ss_pred ecCCcccccccceEEEEEECCCCcEEEEE---ecCCcceeEeccCCCcEEE--EeCCCcEEEEEEcCCCceEEeeccCCe
Confidence 4688999999876654222 122211 134556 88888744433 456789999998888
Q ss_pred eeeeeeccccEEeccCCceEE-------EEEEeecccceEEEEee----------eeeeEEECCCCcEEEEEeCCCcEEE
Q 011924 269 LSKHFRFPWPVNVSSSYCIIL-------LCRLLNFMTEKVIICLL----------CLQHSSQSPDGKLLIIVGDNPDGLL 331 (475)
Q Consensus 269 ~~~~~~~~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~~~----------~i~~~~~sp~g~~l~~~~~dg~i~i 331 (475)
.......+..+.+++++..+. .+.+|+...++...... ....+.+++++.+ +..+.++.+.+
T Consensus 160 ~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 238 (373)
T d2madh_ 160 DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQ 238 (373)
T ss_pred EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEE
Confidence 887777777788888887553 56788888776654433 1224455666654 45567888999
Q ss_pred EECCCCceEE--EeecC----------CCCeEEEEEecCCCEEE----------EEeCCCeEEEEECCCCCceEEEEecC
Q 011924 332 VDSMTGKTIA--SLCGH----------LDFSFASAWHPNGVTFA----------TGNQDKTCRIWDLRNLSESVAVLKGN 389 (475)
Q Consensus 332 wd~~~~~~~~--~l~~h----------~~~v~~~~~sp~g~~l~----------t~s~dg~v~iwd~~~~~~~~~~~~~~ 389 (475)
|+...+.... .+..+ ......++++|++..++ +...++.+.+||..+ ++.+..+. +
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~-~ 316 (373)
T d2madh_ 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQIS-L 316 (373)
T ss_pred EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEec-C
Confidence 9987665322 22221 12334456666666544 445567899999977 67677665 4
Q ss_pred CCceEEEEEccCCCE--EEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 390 LGAIRSIRYTSDGRY--MATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 390 ~~~v~~l~~spdg~~--la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
...+..++|+|||+. +++++.++.|+|||+.+++.+..+..+......+++.++
T Consensus 317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 457889999999984 467889999999999999999998888878888877654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=5.3e-14 Score=131.84 Aligned_cols=225 Identities=12% Similarity=0.119 Sum_probs=158.0
Q ss_pred cEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee----eeeec
Q 011924 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS----KHFRF 275 (475)
Q Consensus 200 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~----~~~~~ 275 (475)
..+|+++.+++|++|+++..+.....+. ..+.+.+..|+| +|+|+++++++..|+.|++|++...... .....
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~--spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEE--eCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence 3568888999999999986654432232 346678899999 9999987677777999999999765332 22233
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCcEEEEECCCCceEE--EeecCCCCeEE
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIA--SLCGHLDFSFA 352 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~--~l~~h~~~v~~ 352 (475)
...+. +++|+|+|++|++++. ++.+.+|+........ ....+...+.+
T Consensus 82 ~~~p~-----------------------------~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (333)
T d1ri6a_ 82 PGSLT-----------------------------HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHS 132 (333)
T ss_dssp SSCCS-----------------------------EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCC
T ss_pred CCCce-----------------------------EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceE
Confidence 44455 8999999999998874 6788899877665433 33456777889
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEE-----ecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCe--
Q 011924 353 SAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVL-----KGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGY-- 423 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~-----~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~-- 423 (475)
+.++|+++++++++. +..|.+|+........... .........++|++++.+++... ..+...+|+.....
T Consensus 133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (333)
T d1ri6a_ 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 212 (333)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc
Confidence 999999999888875 5579999987643322211 12334568899999998876654 55678888864322
Q ss_pred --eEEEEec------cCCCeEEEEEcCCCCeEEEEEecCCc
Q 011924 424 --EKEQEID------FFGEISGISFSPDTESLFIGVWDRTY 456 (475)
Q Consensus 424 --~~~~~~~------~~~~i~~l~fspdg~~l~~~~~D~~~ 456 (475)
....... .......+++++++++++++......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~ 253 (333)
T d1ri6a_ 213 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 253 (333)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe
Confidence 1112211 22457789999999999887655433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.65 E-value=2.6e-13 Score=129.55 Aligned_cols=260 Identities=12% Similarity=-0.006 Sum_probs=173.8
Q ss_pred cceeEEEEEE--cCcEEEEE-----ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE-------
Q 011924 188 TQTQVSTLAV--KDKLLVAG-----GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS------- 253 (475)
Q Consensus 188 ~~~~v~~l~~--~~~~lvsg-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~------- 253 (475)
...++.++++ +++.+++. +..+.|.+||..+.+... ....+. ...+.| +|+|+.++++.
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~--~~~~a~--SpDG~~l~va~~~~~~~~ 91 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGF--LPNPVA--AHSGSEFALASTSFSRIA 91 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCC--CccEEE--cCCCCEEEEEeecCCccc
Confidence 3345666666 88887654 244678999987766542 223333 235777 99999854443
Q ss_pred --eCCCeEEEEECCCCeeeeeee-----------ccccEEeccCCceEE--------EEEEeecccceEEEEeeeeeeEE
Q 011924 254 --NNDCGVRDFDMGKYQLSKHFR-----------FPWPVNVSSSYCIIL--------LCRLLNFMTEKVIICLLCLQHSS 312 (475)
Q Consensus 254 --s~dg~v~iwd~~~~~~~~~~~-----------~~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~~~~i~~~~ 312 (475)
+.++.|++||+.+++.+..+. .+..+.|++++..+. .+.+|+....+.........++.
T Consensus 92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (373)
T d2madh_ 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH 171 (373)
T ss_pred ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence 346789999999998876654 234466788887663 35678888887777777777899
Q ss_pred ECCCCcEE-EEEeCCCcEEEEECCCCceEEEeecCC------CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCc-eEE
Q 011924 313 QSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHL------DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVA 384 (475)
Q Consensus 313 ~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~l~~h~------~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~-~~~ 384 (475)
++|+|+.+ ++.+.++.+.+|+...++.......+. .....+.+++++.+ +..+.++++.+|+...... ...
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 250 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEE
Confidence 99998765 567889999999999887766554322 22344556666554 4556788999999865221 111
Q ss_pred EEecC----------CCceEEEEEccCCCEEE----------EEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCC
Q 011924 385 VLKGN----------LGAIRSIRYTSDGRYMA----------TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 444 (475)
Q Consensus 385 ~~~~~----------~~~v~~l~~spdg~~la----------~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg 444 (475)
.+... ......++++|++..++ ....++.|.+||+.+++.+..+ .+...+.+++|||||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG 329 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDG 329 (373)
T ss_pred eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEEECCCC
Confidence 11111 12334566777776554 3445678999999999887765 466789999999999
Q ss_pred CeE--EEEEecCCc
Q 011924 445 ESL--FIGVWDRTY 456 (475)
Q Consensus 445 ~~l--~~~~~D~~~ 456 (475)
+.+ ++++.|+++
T Consensus 330 ~~~l~vt~~~d~~v 343 (373)
T d2madh_ 330 GPDLYALSAGTEVL 343 (373)
T ss_pred CEEEEEEeCCCCeE
Confidence 864 345555543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=3.5e-13 Score=127.56 Aligned_cols=239 Identities=13% Similarity=0.066 Sum_probs=155.0
Q ss_pred EEcCcEEEEE-----ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE---------eCCCeEEE
Q 011924 196 AVKDKLLVAG-----GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS---------NNDCGVRD 261 (475)
Q Consensus 196 ~~~~~~lvsg-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~---------s~dg~v~i 261 (475)
+.+++.+++. ...++|.+||..+.+... ....+ ....++| ||+|+.++++. +.++.|++
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEE--cCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3477777654 346689999998765442 22222 2346788 99999855543 35789999
Q ss_pred EECCCCeeeeeee-----------ccccEEeccCCceEE--------EEEEeecccceEEEEeeee-----------eeE
Q 011924 262 FDMGKYQLSKHFR-----------FPWPVNVSSSYCIIL--------LCRLLNFMTEKVIICLLCL-----------QHS 311 (475)
Q Consensus 262 wd~~~~~~~~~~~-----------~~~~v~~s~~~~~l~--------~~~v~d~~~~~~~~~~~~i-----------~~~ 311 (475)
||+.+++.+..+. .+..+.|++++..+. .+.+|+..+++.......- ..+
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 9999988877654 234567899988774 4678999888877654421 123
Q ss_pred EECCCCcEEEEEe-CCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce-EEEEecC
Q 011924 312 SQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES-VAVLKGN 389 (475)
Q Consensus 312 ~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~-~~~~~~~ 389 (475)
.++++++.+++.. .++.+.+++..... ..+...+....+.+++..++.++.++.+.+|++...... +.....+
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred EEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence 4444444443332 22233333332221 123444556788888899999999999999999752211 1111111
Q ss_pred ----------CCceEEEEEccCCCEEEEEcCC----------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeE
Q 011924 390 ----------LGAIRSIRYTSDGRYMATAEPA----------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 447 (475)
Q Consensus 390 ----------~~~v~~l~~spdg~~la~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l 447 (475)
......++++|++..++.+..+ +.|.+||+.+++.+..+. +...+.+++|||||+.+
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPL 314 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCE
T ss_pred ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeE
Confidence 1233468899999988776543 369999999998776665 44568899999999853
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.54 E-value=1.5e-13 Score=132.40 Aligned_cols=251 Identities=12% Similarity=0.024 Sum_probs=167.9
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecC---------------------------CCCceeEEEEEeCCCCCeEEEEEe
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYD---------------------------DNAITNAVEIYGSPSGAVHFTASN 254 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~---------------------------~~~~v~~l~~~~s~~g~~~l~s~s 254 (475)
+++|+.+|+|.+|++...+....+..+.. |......... +|+|++++++..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~g--tpDGr~lfV~d~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDG--RYDGKYLFINDK 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETT--EEEEEEEEEEET
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecc--cCCCCEEEEEcC
Confidence 67888999999999976654432222210 1222333333 689999888888
Q ss_pred CCCeEEEEECCCCeeeeeee-----ccccEEeccCCceEEE-------------------------EEEeecccceEEEE
Q 011924 255 NDCGVRDFDMGKYQLSKHFR-----FPWPVNVSSSYCIILL-------------------------CRLLNFMTEKVIIC 304 (475)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~-----~~~~v~~s~~~~~l~~-------------------------~~v~d~~~~~~~~~ 304 (475)
.+..|.++|+.+++....+. .+..+.|++++..+.. +..+|..+.+....
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q 171 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ 171 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence 89999999999998877554 3455778888875432 24466666554433
Q ss_pred ee---eeeeEEECCCCcEEEEEeCC-----------------------------------------CcEEEEECCCCceE
Q 011924 305 LL---CLQHSSQSPDGKLLIIVGDN-----------------------------------------PDGLLVDSMTGKTI 340 (475)
Q Consensus 305 ~~---~i~~~~~sp~g~~l~~~~~d-----------------------------------------g~i~iwd~~~~~~~ 340 (475)
.. ....++++|+|+++++.+.+ +.+.+++....+.+
T Consensus 172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 22 56689999999998877643 33444444455566
Q ss_pred EEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEECCCCC----------ceEEEEecCCCceEEEEEccCCCEEEEEc
Q 011924 341 ASLCGHLDFSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLS----------ESVAVLKGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 341 ~~l~~h~~~v~~~~~sp~g~~l~t-~s~dg~v~iwd~~~~~----------~~~~~~~~~~~~v~~l~~spdg~~la~~~ 409 (475)
..+..... ...+.++|||+++++ +..+++|.|||+.+.. ..+.......-.....+|+++|+.+.+..
T Consensus 252 ~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~ 330 (441)
T d1qnia2 252 RYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF 330 (441)
T ss_dssp EEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred EEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc
Confidence 66665443 567999999998765 4568999999985421 11111111112345678999999888999
Q ss_pred CCCeEEEEECCC---------Ce-eEEEE-----eccCCCeEEEEEcCCCCeEEEE---EecCC
Q 011924 410 PADFVHVYDVKS---------GY-EKEQE-----IDFFGEISGISFSPDTESLFIG---VWDRT 455 (475)
Q Consensus 410 ~dg~i~iwd~~~---------~~-~~~~~-----~~~~~~i~~l~fspdg~~l~~~---~~D~~ 455 (475)
.|..|..|++.. .. .+..+ .+|...+.+..|+|||++|+++ +.|+-
T Consensus 331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccC
Confidence 999999999742 11 22222 3566666777899999999999 66654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=3.2e-11 Score=114.93 Aligned_cols=264 Identities=8% Similarity=-0.123 Sum_probs=158.5
Q ss_pred CeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEe----------cCceEEEEeCCCCC
Q 011924 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGG----------FQGELICKHLDRPG 220 (475)
Q Consensus 151 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~----------~dg~i~vw~~~~~~ 220 (475)
..+..|+..+++....+.... .+...++.+|+.|++.+ .++.|.+||..+.+
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~------------------~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~ 107 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAF------------------LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECT------------------TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred ceEEEEeCCCCcEEEEEeCCC------------------CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc
Confidence 457777887776655443211 12233444777777643 47889999998766
Q ss_pred ceEEEeeecC----CCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccE-----------EeccCC
Q 011924 221 VSFCSRTTYD----DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV-----------NVSSSY 285 (475)
Q Consensus 221 ~~~~~~~~~~----~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-----------~~s~~~ 285 (475)
.......... .......++| +|+|++++++...++.+.+||+.+++....+..+... .+++++
T Consensus 108 ~~~~i~~p~~~~~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg 185 (368)
T d1mdah_ 108 PIADIELPDAPRFSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred EeeeecCCccceecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCC
Confidence 5533222111 1112235777 9999986666557899999999999988877643322 233444
Q ss_pred ceEEEEEEeecccceEEEE-------eeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEe--ecCC---------
Q 011924 286 CIILLCRLLNFMTEKVIIC-------LLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL--CGHL--------- 347 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~-------~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l--~~h~--------- 347 (475)
..+ .+.+.+......... ...+..+.+.+++..+.+. .+.+++++...+...... ..+.
T Consensus 186 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (368)
T d1mdah_ 186 SLA-ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp SCE-EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred CEE-EEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeec
Confidence 322 122211111111100 0122356777777666543 456777777655443221 1111
Q ss_pred -CCeEEEEEecCCCEEEEEeCC---------CeEEEEECCCCCceEEEEecCCCceEEEEEccCCC-E-EEEEcCCCeEE
Q 011924 348 -DFSFASAWHPNGVTFATGNQD---------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-Y-MATAEPADFVH 415 (475)
Q Consensus 348 -~~v~~~~~sp~g~~l~t~s~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~-~-la~~~~dg~i~ 415 (475)
.....++++|++..++....+ ..|.+||..+ ++.+..+... ..+.+++|+|||+ + ++++..++.|+
T Consensus 263 ~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~ 340 (368)
T d1mdah_ 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEE
Confidence 123357889988877665432 3599999977 6667666543 4688999999997 3 45667789999
Q ss_pred EEECCCCeeEEEEeccCCCeEEEEE
Q 011924 416 VYDVKSGYEKEQEIDFFGEISGISF 440 (475)
Q Consensus 416 iwd~~~~~~~~~~~~~~~~i~~l~f 440 (475)
|||..+++.+..+... .....|.+
T Consensus 341 v~D~~tgk~~~~i~~g-~~P~~l~~ 364 (368)
T d1mdah_ 341 IYDAASDQDQSSVELD-KGPESLSV 364 (368)
T ss_dssp EEESSSCEEEEECCCC-SCCCEEEC
T ss_pred EEECCCCCEEEEEECC-CCCCEEEE
Confidence 9999999988776532 33445544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=1.5e-10 Score=114.06 Aligned_cols=294 Identities=9% Similarity=-0.001 Sum_probs=171.2
Q ss_pred eEEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe-------
Q 011924 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG------- 206 (475)
Q Consensus 136 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~------- 206 (475)
+-|.++...+ +..++.+++|+..+++...+++... +. .....|.+++| ++++|+.++
T Consensus 22 ~~W~~d~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~-~~------------~~~~~i~~~~~SpDg~~i~~~~~~~~~~r 87 (470)
T d2bgra1 22 LRWISDHEYL-YKQENNILVFNAEYGNSSVFLENST-FD------------EFGHSINDYSISPDGQFILLEYNYVKQWR 87 (470)
T ss_dssp CEECSSSEEE-EESSSCEEEEETTTCCEEEEECTTT-TT------------TSSSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred CEeCCCCEEE-EEcCCcEEEEECCCCCEEEEEchhh-hh------------hccCccceeEECCCCCEEEEEECCcceee
Confidence 4477666544 4567889999999998877654321 10 01224666666 999998874
Q ss_pred --cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee----------
Q 011924 207 --FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------- 274 (475)
Q Consensus 207 --~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------- 274 (475)
..|.+.+|++..... ..+..+...+..+.| ||+|+. ++.. .++.+.+|+..+++..+...
T Consensus 88 ~s~~~~~~l~d~~~~~~----~~l~~~~~~~~~~~~--SPDG~~-ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g 159 (470)
T d2bgra1 88 HSYTASYDIYDLNKRQL----ITEERIPNNTQWVTW--SPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (470)
T ss_dssp SCEEEEEEEEETTTTEE----CCSSCCCTTEEEEEE--CSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred eccCceEEEEECCCCcc----cccccCCcccccccc--ccCcce-eeEe-ecccceEEECCCCceeeeeeccCCCccccc
Confidence 367889999986542 345566777888888 999998 5554 57789999998876554322
Q ss_pred ------------ccccEEeccCCceEEEE------------------------------------------EEeecccce
Q 011924 275 ------------FPWPVNVSSSYCIILLC------------------------------------------RLLNFMTEK 300 (475)
Q Consensus 275 ------------~~~~v~~s~~~~~l~~~------------------------------------------~v~d~~~~~ 300 (475)
....+.|||+|..++.. .+|+...+.
T Consensus 160 ~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 239 (470)
T d2bgra1 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (470)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCC
T ss_pred ccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcc
Confidence 12235599999988632 222222211
Q ss_pred EEEEe---------------eeeeeEEECCCCcEEEEEe-CCC-----cEEEEECCCCceEEEee------cCCC-----
Q 011924 301 VIICL---------------LCLQHSSQSPDGKLLIIVG-DNP-----DGLLVDSMTGKTIASLC------GHLD----- 348 (475)
Q Consensus 301 ~~~~~---------------~~i~~~~~sp~g~~l~~~~-~dg-----~i~iwd~~~~~~~~~l~------~h~~----- 348 (475)
..... ..+..+.|.+++++++... ..+ .+..+|..++....... ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~ 319 (470)
T d2bgra1 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (470)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred eeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecc
Confidence 10000 0123577888777666542 222 23344555665433211 0111
Q ss_pred CeEEEEEecCC--CEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEE-EEEcCCC----eEEEE--EC
Q 011924 349 FSFASAWHPNG--VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPAD----FVHVY--DV 419 (475)
Q Consensus 349 ~v~~~~~sp~g--~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-a~~~~dg----~i~iw--d~ 419 (475)
......|.+++ .+++.+..+|..+||-+...+.....+..+...|..+ ++++++.+ +++..++ .-+|| ++
T Consensus 320 ~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~ 398 (470)
T d2bgra1 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (470)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred cCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEEC
Confidence 11123444543 4456677788766665543355556666555667766 44555544 3443322 22444 44
Q ss_pred CCCeeEEEE----eccCCCeEEEEEcCCCCeEEEEEe
Q 011924 420 KSGYEKEQE----IDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 420 ~~~~~~~~~----~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
..+.....+ ..|...+..++|||||++++....
T Consensus 399 ~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s 435 (470)
T d2bgra1 399 SDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (470)
T ss_dssp TCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCCCceeEecccccCCCCCEEEEEECCCCCEEEEEec
Confidence 544433333 246678999999999999885433
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=8.3e-10 Score=99.71 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=140.8
Q ss_pred EEEEE--cCcEEEEE-ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee
Q 011924 193 STLAV--KDKLLVAG-GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (475)
Q Consensus 193 ~~l~~--~~~~lvsg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~ 269 (475)
..+++ +|++.++. +..+.+..++....... ............+++ +++|.. +++....+.+++++-.....
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~gvav--~~~g~i-~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAV--DGAGTV-YVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEE---ECCCCSCCSCCCEEE--CTTCCE-EEEETTTEEEEECTTCSCCE
T ss_pred CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE---EeccCCccCceEEEE--cCCCCE-EEeeeeeceeeeeeecccee
Confidence 46677 67766654 45577777766544322 121121223466777 899874 77766666676666555444
Q ss_pred eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCC
Q 011924 270 SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF 349 (475)
Q Consensus 270 ~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~ 349 (475)
+.......... ++++.++|+++++-.....+..++............-...
T Consensus 91 ~~~~~~~~~p~-----------------------------~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (260)
T d1rwia_ 91 VLPFDGLNYPE-----------------------------GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND 141 (260)
T ss_dssp ECCCCSCCSEE-----------------------------EEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCS
T ss_pred eeeeeeeeecc-----------------------------cccccccceeEeeccccccccccccccceeeeeeecccCC
Confidence 43333333445 8899999998877666677777776544332222222345
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe
Q 011924 350 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 350 v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
..+++++|+++++++...++.|..+|... ................++++++|+++++-...+.|..++...........
T Consensus 142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~ 220 (260)
T d1rwia_ 142 PDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF 220 (260)
T ss_dssp CCEEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC
T ss_pred cceeeecCCCCEeeecccccccccccccc-ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEcc
Confidence 67899999999888888888999999864 22222222344567899999999988888888899988865543222112
Q ss_pred ccCCCeEEEEEcCCCCeEEE
Q 011924 430 DFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 430 ~~~~~i~~l~fspdg~~l~~ 449 (475)
.......+|+++++|..+++
T Consensus 221 ~~~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 221 TGLNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp CSCCCEEEEEECTTCCEEEE
T ss_pred CCCCCeEEEEEeCCCCEEEE
Confidence 23357889999999975444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.24 E-value=3.7e-11 Score=118.51 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=115.1
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeec-----CCCCeEEEEEecCCCEEEEEeC---------CCeEEEEE
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-----HLDFSFASAWHPNGVTFATGNQ---------DKTCRIWD 375 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~-----h~~~v~~~~~sp~g~~l~t~s~---------dg~v~iwd 375 (475)
.+.|.+++.++.. .++.+.+||+.+++....+.. |...|.++.|||||++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 6789999987753 578899999999988766654 4567999999999999998853 56789999
Q ss_pred CCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEec------------------cCCCeEE
Q 011924 376 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID------------------FFGEISG 437 (475)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~i~~ 437 (475)
+.+ + .+..+..+...+..+.|||||+.||... ++.+.+|+..++........ ..+....
T Consensus 99 ~~~-~-~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 99 LNK-R-QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp TTT-T-EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CCC-C-cccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence 975 4 4566777888999999999999999965 66799999998876543322 1234567
Q ss_pred EEEcCCCCeEEEEEecCCcceEEE
Q 011924 438 ISFSPDTESLFIGVWDRTYGSLLE 461 (475)
Q Consensus 438 l~fspdg~~l~~~~~D~~~~~ll~ 461 (475)
+.|||||++|+....|.+-...+.
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEE
T ss_pred cEECCCCCccceeEecCCcCceEE
Confidence 889999999999998877444333
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.18 E-value=6.9e-08 Score=91.36 Aligned_cols=250 Identities=13% Similarity=0.111 Sum_probs=146.0
Q ss_pred EEEEEec--CceEEEEeCCCCCceEE--EeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeeeeee-
Q 011924 201 LLVAGGF--QGELICKHLDRPGVSFC--SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR- 274 (475)
Q Consensus 201 ~lvsg~~--dg~i~vw~~~~~~~~~~--~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~~~~- 274 (475)
.|++|++ .|.|.++.++.....+. ..........+..|++ +|+++.+.+ ++ .+.+..|.+.. +.......
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~--s~d~~~ly~-~~-~~~~~~~~i~~~~~~~~~~~~ 79 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTF--DHERKNIYG-AA-MKKWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEE--CTTSSEEEE-EE-BTEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEE--cCCCCEEEE-Ee-CCcEEEEEEeCCCCeEEEeee
Confidence 4666754 56788877776554332 1222233444667888 999997444 43 45677776643 22222111
Q ss_pred ----ccccEEeccCCceEEE---------E------------EEeecc-cceE---EEEee-----eeeeEEECCCCcEE
Q 011924 275 ----FPWPVNVSSSYCIILL---------C------------RLLNFM-TEKV---IICLL-----CLQHSSQSPDGKLL 320 (475)
Q Consensus 275 ----~~~~v~~s~~~~~l~~---------~------------~v~d~~-~~~~---~~~~~-----~i~~~~~sp~g~~l 320 (475)
.+..+.+++++..+.. + .+.... .+.. ..... .+.++.|+|+|+++
T Consensus 80 ~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l 159 (365)
T d1jofa_ 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEE
Confidence 3445566777664321 1 111111 1111 11111 35689999999988
Q ss_pred EEEeC-CCcEEEEECC-CCceE--EEee--cCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCc-eEEEEec----
Q 011924 321 IIVGD-NPDGLLVDSM-TGKTI--ASLC--GHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSE-SVAVLKG---- 388 (475)
Q Consensus 321 ~~~~~-dg~i~iwd~~-~~~~~--~~l~--~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~-~~~~~~~---- 388 (475)
+++.. ...|.+|+.. +++.. ..+. ......+.++|+|+++++++.. .+++|.+|++..... .+.....
T Consensus 160 ~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~ 239 (365)
T d1jofa_ 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence 88764 3468888765 33322 2222 2345788999999999887766 478999999865221 1211110
Q ss_pred -------------CCCceEEEEEccCCCEEEEEcC------CCeEEEEECCCCeeEEE-E-----eccCCCeEEEEEcC-
Q 011924 389 -------------NLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQ-E-----IDFFGEISGISFSP- 442 (475)
Q Consensus 389 -------------~~~~v~~l~~spdg~~la~~~~------dg~i~iwd~~~~~~~~~-~-----~~~~~~i~~l~fsp- 442 (475)
.......+.++|+|++|+++.. .+.|..|++.....+.. . ........+++|+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~ 319 (365)
T d1jofa_ 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence 1123557899999999988743 23477888754322211 1 12234678899998
Q ss_pred CCCeEEEEEecC
Q 011924 443 DTESLFIGVWDR 454 (475)
Q Consensus 443 dg~~l~~~~~D~ 454 (475)
+|++|+++..+.
T Consensus 320 ~G~~l~va~~~s 331 (365)
T d1jofa_ 320 SDEWMAITDDQE 331 (365)
T ss_dssp CTTEEEEECSSS
T ss_pred CCCEEEEEeCCC
Confidence 899999886554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=2.9e-08 Score=89.19 Aligned_cols=211 Identities=14% Similarity=0.099 Sum_probs=131.1
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC--eEEEEECCCCeeeeeeeccccEEeccCCce
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNVSSSYCI 287 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~ 287 (475)
+|.+-|.+..... .++ .+...+...+| ||+|+.++++....+ .+.+.+...+.............
T Consensus 20 ~l~i~d~dG~~~~---~l~-~~~~~~~sP~w--SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 86 (269)
T d2hqsa1 20 ELRVSDYDGYNQF---VVH-RSPQPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG------- 86 (269)
T ss_dssp EEEEEETTSCSCE---EEE-EESSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-------
T ss_pred EEEEEcCCCCCcE---EEe-cCCCceeeeEE--CCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccc-------
Confidence 5666676644433 222 23445667788 999998655554444 45666776666555555666666
Q ss_pred EEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC-CCc--EEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 288 ILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD-NPD--GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 288 l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-dg~--i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
...|+|+|+.++.... .+. +..+........ .............+++++..++.
T Consensus 87 ----------------------~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 143 (269)
T d2hqsa1 87 ----------------------APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAF 143 (269)
T ss_dssp ----------------------EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEE
T ss_pred ----------------------cceecCCCCeeeEeeecCCccceeecccccccce-eeeecccccccccccccccccee
Confidence 8899999999987653 222 333333333332 33334445556678887665554
Q ss_pred E-eCCCe--EEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCC---eEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 365 G-NQDKT--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 365 ~-s~dg~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
. ..++. |.+.++. ......+...........|+|+|+.++..+.++ .|.+.+..++. .+.....+.....
T Consensus 144 ~~~~~g~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p 219 (269)
T d2hqsa1 144 TSDQAGRPQVYKVNIN--GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETP 219 (269)
T ss_dssp EECTTSSCEEEEEETT--SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEE
T ss_pred cccccCCceEeeeecc--cccceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc--ceEeecCccccce
Confidence 4 44554 4555554 344455555666778899999999888776543 45556655553 3444556677889
Q ss_pred EEcCCCCeEEEEEecCCcceEE
Q 011924 439 SFSPDTESLFIGVWDRTYGSLL 460 (475)
Q Consensus 439 ~fspdg~~l~~~~~D~~~~~ll 460 (475)
.|||||++|+..+..+....|.
T Consensus 220 ~~SPDG~~i~f~s~~~~~~~l~ 241 (269)
T d2hqsa1 220 SLAPNGTMVIYSSSQGMGSVLN 241 (269)
T ss_dssp EECTTSSEEEEEEEETTEEEEE
T ss_pred EECCCCCEEEEEEcCCCCcEEE
Confidence 9999999998877665444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=3.8e-10 Score=107.29 Aligned_cols=235 Identities=11% Similarity=-0.053 Sum_probs=130.4
Q ss_pred EecCce--EEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE---------eCCCeEEEEECCCCeeeeee
Q 011924 205 GGFQGE--LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS---------NNDCGVRDFDMGKYQLSKHF 273 (475)
Q Consensus 205 g~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~---------s~dg~v~iwd~~~~~~~~~~ 273 (475)
...+|. |.+||....+.. .....+.. ..+.+ +|+|+.+.++. +.|++|++||..+++.+..+
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~---~~~~~~~~--~~~a~--spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i 112 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTL---GHSLGAFL--SLAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEE---EEEEECTT--CEEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred ccCCCcceEEEEeCCCCcEE---EEEeCCCC--CcceE--CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee
Confidence 344454 555565544433 22223332 35777 99999844433 34778999999999887766
Q ss_pred ec-----------cccEEeccCCceEE-------EEEEeecccceEEEEeeeeeeEEECC-CCcEEEEEeCCCcEEEEEC
Q 011924 274 RF-----------PWPVNVSSSYCIIL-------LCRLLNFMTEKVIICLLCLQHSSQSP-DGKLLIIVGDNPDGLLVDS 334 (475)
Q Consensus 274 ~~-----------~~~v~~s~~~~~l~-------~~~v~d~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~dg~i~iwd~ 334 (475)
.. +..+.|+++|+.++ .+.+||..+++.......-.+..+.| ....+++.+.||.+.++++
T Consensus 113 ~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~ 192 (368)
T d1mdah_ 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEe
Confidence 42 33456777776663 35567776666655443222222222 1223344455555555555
Q ss_pred CCCceEEEe------ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEe--cC----------CCceEEE
Q 011924 335 MTGKTIASL------CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GN----------LGAIRSI 396 (475)
Q Consensus 335 ~~~~~~~~l------~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~--~~----------~~~v~~l 396 (475)
..+...... ..+...+..+.+.+++..+.+. .+.+.+++... ........ .. .+....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 269 (368)
T d1mdah_ 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPA-AGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCS-SCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred cCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecC-CceEEEeecccccceeeeeeecCCCceeE
Confidence 433222111 1233334455666666554443 34455666543 22211111 00 1123458
Q ss_pred EEccCCCEEEEEcCC---------CeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCe-EEEE
Q 011924 397 RYTSDGRYMATAEPA---------DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES-LFIG 450 (475)
Q Consensus 397 ~~spdg~~la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~-l~~~ 450 (475)
+++|++..++....+ ..|.+||.++++.+..+. +...+.+++|||||+. |++.
T Consensus 270 a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEE
Confidence 899999877665322 369999999998776554 4467889999999975 4443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=1.4e-07 Score=85.50 Aligned_cols=225 Identities=12% Similarity=0.181 Sum_probs=149.7
Q ss_pred EEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeec-CCCC--ceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECCC
Q 011924 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDNA--ITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGK 266 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~~--~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~~ 266 (475)
..+++ +++++|+-..++.|++|+.+. .......... .... .-..+++ .++ +..+++..+.++.|..++. .
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAV--VRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEE--ETTTTEEEEEECGGGCEEEEECT-T
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccc--cccccccceeccCCccccccccc-c
Confidence 46666 788888878889999998652 2221111111 1111 1233444 333 3333334445567777776 4
Q ss_pred Ceeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 267 YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 267 ~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
+.....+. ...... .+++.++|.++++....+.+.+++. +++.+..+.
T Consensus 102 g~~~~~~~~~~~~~p~-----------------------------~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g 151 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPR-----------------------------GVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFG 151 (279)
T ss_dssp SCEEEEECTTTCSCEE-----------------------------EEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEE
T ss_pred ccceeecCCCcccccc-----------------------------eeccccCCcEEEEeeccceeeEecc-CCceeeccc
Confidence 55555543 223334 7889999998888877788888885 577776653
Q ss_pred --cCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec--CCCceEEEEEccCCCEEEEEcC-CCeEEEEEC
Q 011924 345 --GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEP-ADFVHVYDV 419 (475)
Q Consensus 345 --~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~spdg~~la~~~~-dg~i~iwd~ 419 (475)
.+......+++.++++++++....+.|.+||.. ++.+..+.. .......+++.|+|+++++-+. ++.|.+|+
T Consensus 152 ~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~- 228 (279)
T d1q7fa_ 152 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT- 228 (279)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-
T ss_pred ccccccccceeeeccceeEEeeeccccceeeeecC--CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-
Confidence 356678899999999999998889999999974 566666632 3445789999999997776544 45799999
Q ss_pred CCCeeEEEEec--cCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 420 KSGYEKEQEID--FFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 420 ~~~~~~~~~~~--~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
.+|+.+..+.. ......++++.|+|. |+++..+..
T Consensus 229 ~~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~ 265 (279)
T d1q7fa_ 229 QDGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYR 265 (279)
T ss_dssp TTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTE
T ss_pred CCCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCe
Confidence 56776666543 235689999999996 555555543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.04 E-value=2.5e-07 Score=85.47 Aligned_cols=239 Identities=11% Similarity=0.132 Sum_probs=145.4
Q ss_pred EEEE--cCcEEEEEec-------CceEEEEeCCCCCceEEEee-ecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE
Q 011924 194 TLAV--KDKLLVAGGF-------QGELICKHLDRPGVSFCSRT-TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (475)
Q Consensus 194 ~l~~--~~~~lvsg~~-------dg~i~vw~~~~~~~~~~~~~-~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd 263 (475)
.+++ +|+++++... +|+|..|+............ .....+.-+.+.+ .++|+. ++++.....|..++
T Consensus 22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~--~~dg~~-l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC--DRDANQ-LFVADMRLGLLVVQ 98 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE--CSSSSE-EEEEETTTEEEEEE
T ss_pred EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEE--eCCCCE-EEEEECCCeEEEEe
Confidence 3455 7777766432 46788888776543321111 1111122456777 999986 55555667788888
Q ss_pred CCCCeeeeeeeccccEEe-ccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------------CC
Q 011924 264 MGKYQLSKHFRFPWPVNV-SSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------------NP 327 (475)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~-s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------------dg 327 (475)
.................+ .|+ .+++.|+|++.++-.. .|
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pn-------------------------dl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G 153 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCN-------------------------DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCC-------------------------EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred CCCcEEEEEeccccccccCCCc-------------------------EEEECCCCCEEEecCccCcccccccceeccCCc
Confidence 866543221111111111 111 7889999988776421 23
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEEecCCC-----EEEEEeCCCeEEEEECCCCCceE-----EEEec-CCCceEEE
Q 011924 328 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-----TFATGNQDKTCRIWDLRNLSESV-----AVLKG-NLGAIRSI 396 (475)
Q Consensus 328 ~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~-----~l~t~s~dg~v~iwd~~~~~~~~-----~~~~~-~~~~v~~l 396 (475)
.|+.++. .++..... ........++|+|++. +.++-+..+.|..||+...+... ..+.. ..+....+
T Consensus 154 ~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 154 SIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence 3444443 34443333 2334567899999764 44555678889999886433321 11111 22345689
Q ss_pred EEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEEEe
Q 011924 397 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 464 (475)
Q Consensus 397 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~~~ 464 (475)
++.++|++.++....+.|.+||.+.+.....+......+++++|.|+++.|+++..+. +.+..+.-
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~--g~i~~~~~ 297 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN--NAVWKFEW 297 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT--TEEEEEEC
T ss_pred EEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC--CcEEEEEC
Confidence 9999999887777788999999887776666665567889999999999888876543 45566553
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=4.7e-07 Score=81.02 Aligned_cols=214 Identities=12% Similarity=0.055 Sum_probs=131.2
Q ss_pred EEEEEE--cCcEEEEEecC-c--eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEE--C
Q 011924 192 VSTLAV--KDKLLVAGGFQ-G--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--M 264 (475)
Q Consensus 192 v~~l~~--~~~~lvsg~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd--~ 264 (475)
+..-+| +|+.||..... + .+.+.+....... ....+.+......| +|+|+.++......+...++. .
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEET
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeeccccccee--cCCCCeeeEeeecCCccceeeccc
Confidence 455566 89999865433 2 3555555443322 23345566677778 999998666655554443333 2
Q ss_pred CCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-CCC--cEEEEECCCCceEE
Q 011924 265 GKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG-DNP--DGLLVDSMTGKTIA 341 (475)
Q Consensus 265 ~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~dg--~i~iwd~~~~~~~~ 341 (475)
................ ...+++++..++..+ .++ .|.+.++..+. ..
T Consensus 115 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~ 164 (269)
T d2hqsa1 115 ASGQIRQVTDGRSNNT-----------------------------EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQ 164 (269)
T ss_dssp TTCCEEECCCCSSCEE-----------------------------EEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CE
T ss_pred ccccceeeeecccccc-----------------------------ccccccccccceecccccCCceEeeeeccccc-ce
Confidence 2233322222333333 456777776665554 344 46666666554 33
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcC---CCeEEEE
Q 011924 342 SLCGHLDFSFASAWHPNGVTFATGNQDK-TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVY 417 (475)
Q Consensus 342 ~l~~h~~~v~~~~~sp~g~~l~t~s~dg-~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~---dg~i~iw 417 (475)
.+..+........|+|+++.++..+.++ ...+|......... .+...........|||||+.||..+. ...|+++
T Consensus 165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~ 243 (269)
T d2hqsa1 165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV 243 (269)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred eeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4455667778889999999888776543 44444433323333 33344556778999999999886553 3478999
Q ss_pred ECCCCeeEEEEeccCCCeEEEEEcCC
Q 011924 418 DVKSGYEKEQEIDFFGEISGISFSPD 443 (475)
Q Consensus 418 d~~~~~~~~~~~~~~~~i~~l~fspd 443 (475)
++..+. ..++....+.+...+|||-
T Consensus 244 ~~dg~~-~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 244 STDGRF-KARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp ETTSCC-EEECCCSSSEEEEEEECCC
T ss_pred ECCCCC-EEEEeCCCCcEEeEEeCCC
Confidence 987654 4566667788999999983
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.03 E-value=1.2e-07 Score=87.13 Aligned_cols=224 Identities=9% Similarity=0.041 Sum_probs=148.7
Q ss_pred eEEEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC--
Q 011924 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-- 266 (475)
Q Consensus 191 ~v~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-- 266 (475)
.+..+++ +|+++++...+++|..|+.... . .......+.++++++ +++|+. +++...++.+..|+...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~---~~~~~~~~~~~gla~--~~dG~l-~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--Q---QIHATVEGKVSGLAF--TSNGDL-VATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--E---EEEEECSSEEEEEEE--CTTSCE-EEEEECTTSCEEEEEECTT
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--E---EEEEcCCCCcceEEE--cCCCCe-EEEecCCceEEEEEecccc
Confidence 4556777 8999999999999888775432 2 223344567889988 999984 77777788888877643
Q ss_pred Ceeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee
Q 011924 267 YQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 344 (475)
Q Consensus 267 ~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~ 344 (475)
+....... .....+ .+++.++|+++++.+.++.+..++...+.....+.
T Consensus 101 ~~~~~~~~~~~~~~~n-----------------------------~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLN-----------------------------GITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp SCEEEEEECTTCSCEE-----------------------------EEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceeeccccCCccccc-----------------------------eeEEccCCCEEeeccccccceeeeccCCcceeEec
Confidence 22222211 334455 88999999999888888899999988765433222
Q ss_pred c----------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCce--EEEEecCCCceEEEEEccCCCEEEEEcCCC
Q 011924 345 G----------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES--VAVLKGNLGAIRSIRYTSDGRYMATAEPAD 412 (475)
Q Consensus 345 ~----------h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~spdg~~la~~~~dg 412 (475)
. .......+.+.. +.++++.+..+.|..+++...... ..... .......++|+++|++.++...++
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~ 229 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYN 229 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTC
T ss_pred CCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCC
Confidence 1 112345566653 345555667888888887643221 11121 233456899999999888887888
Q ss_pred eEEEEECCCCeeEEEEe--ccCCCeEEEEE---cCCCCeEEEEEecC
Q 011924 413 FVHVYDVKSGYEKEQEI--DFFGEISGISF---SPDTESLFIGVWDR 454 (475)
Q Consensus 413 ~i~iwd~~~~~~~~~~~--~~~~~i~~l~f---spdg~~l~~~~~D~ 454 (475)
.|..++... ....... .....+++++| +||++.|++++..+
T Consensus 230 ~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 230 SVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp CEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cEEEECCCC-CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence 999998654 3322222 23356899999 78999999886554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.01 E-value=9.9e-09 Score=98.31 Aligned_cols=208 Identities=11% Similarity=-0.058 Sum_probs=129.0
Q ss_pred CeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEE-----EEEEeecccce--EEEEeeeeeeEEECCCCcE
Q 011924 247 AVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIIL-----LCRLLNFMTEK--VIICLLCLQHSSQSPDGKL 319 (475)
Q Consensus 247 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~-----~~~v~d~~~~~--~~~~~~~i~~~~~sp~g~~ 319 (475)
-+.+++++.+|.|++|++.+++.++.+.- |+|.+.... ..+++...... ...+...+.....+|||++
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV-----fspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~ 85 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPV-----FNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY 85 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECS-----SSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEe-----EcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE
Confidence 35688889999999999999998887742 333221110 00000000000 0000001224456789999
Q ss_pred EEEEe-CCCcEEEEECCCCceEEEee-cCCCCeEEEEEecCCC--EEEEEeCCC-----------------eEEEEECCC
Q 011924 320 LIIVG-DNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGV--TFATGNQDK-----------------TCRIWDLRN 378 (475)
Q Consensus 320 l~~~~-~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g~--~l~t~s~dg-----------------~v~iwd~~~ 378 (475)
|++.. .+..|.++|+.+++....+. .+...+..++|+|+|+ +++..+.+. .+..+|..+
T Consensus 86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t 165 (441)
T d1qnia2 86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET 165 (441)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence 97764 67889999999999888775 3567789999999998 444444432 245578766
Q ss_pred CCceEEEEecCCCceEEEEEccCCCEEEEEcCC-----------------------------------------CeEEEE
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----------------------------------------DFVHVY 417 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~d-----------------------------------------g~i~iw 417 (475)
.+....+... +.+..++|+|+|+++++++.+ +.+.|+
T Consensus 166 -~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 166 -MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp -CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred -ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 4445555433 356789999999998877643 233444
Q ss_pred ECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEEEecCCcceEEEE
Q 011924 418 DVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 462 (475)
Q Consensus 418 d~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~~~D~~~~~ll~~ 462 (475)
+......+..+.. .....++.+||||+++++++.....-.++.+
T Consensus 244 ~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 244 GRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp CSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred cccCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence 4343334444433 3446789999999999877554444344443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.01 E-value=8.9e-07 Score=83.45 Aligned_cols=160 Identities=11% Similarity=0.039 Sum_probs=104.7
Q ss_pred CCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCC-Ceeee--eee---ccccEEeccCCceEEEEEEeecccceEEEEe
Q 011924 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSK--HFR---FPWPVNVSSSYCIILLCRLLNFMTEKVIICL 305 (475)
Q Consensus 232 ~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~-~~~~~--~~~---~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~ 305 (475)
...+.++.| +|+|++++++......|.+|+... +.... ... ......
T Consensus 144 ~~h~h~v~~--sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr------------------------- 196 (365)
T d1jofa_ 144 NTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR------------------------- 196 (365)
T ss_dssp TCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE-------------------------
T ss_pred CCcceEEEE--CCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE-------------------------
Confidence 345678888 999998676666667899987654 22221 111 122344
Q ss_pred eeeeeEEECCCCcEEEEEe-CCCcEEEEECCCCceE--EE---ee--------------cCCCCeEEEEEecCCCEEEEE
Q 011924 306 LCLQHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTI--AS---LC--------------GHLDFSFASAWHPNGVTFATG 365 (475)
Q Consensus 306 ~~i~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~--~~---l~--------------~h~~~v~~~~~sp~g~~l~t~ 365 (475)
.++|+|+++++.+.. .++.|.+|++..++.. .. +. .+......+.++|+|++|+++
T Consensus 197 ----~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 197 ----WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp ----EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred ----EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 899999999887665 5788999998765422 21 11 111235678999999999888
Q ss_pred eC------CCeEEEEECCCCCceEEEE-----ecCCCceEEEEEcc-CCCEEEEEc-CCCeEEEEECCCC
Q 011924 366 NQ------DKTCRIWDLRNLSESVAVL-----KGNLGAIRSIRYTS-DGRYMATAE-PADFVHVYDVKSG 422 (475)
Q Consensus 366 s~------dg~v~iwd~~~~~~~~~~~-----~~~~~~v~~l~~sp-dg~~la~~~-~dg~i~iwd~~~~ 422 (475)
.. ...|..|++...+...... .......+.++++| +|++|+++. .++.|.+|++...
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 54 2347788876544322211 11233567899998 899887775 5689999987654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.98 E-value=6.4e-07 Score=82.79 Aligned_cols=226 Identities=14% Similarity=0.118 Sum_probs=145.4
Q ss_pred EEEEE--cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeC----CCeEEEEECCC
Q 011924 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN----DCGVRDFDMGK 266 (475)
Q Consensus 193 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~----dg~v~iwd~~~ 266 (475)
-.++| +|++.++-...|.|..|+....... ..........+.+++ +++|+. +++... .+.+...+..+
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~---~~~~~~~~~p~gla~--~~dG~l-~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---RPFVSHKANPAAIKI--HKDGRL-FVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECSSSSEEEEEE--CTTSCE-EEEECTTSSSCCEEEEECTTS
T ss_pred EeCEECCCCCEEEEECCCCEEEEEECCCCeEE---EEEeCCCCCeeEEEE--CCCCCE-EEEecCCCccceeEEEEcCCC
Confidence 46677 7787777778899988887654433 222333445678888 999975 555432 23345555555
Q ss_pred Ceeeeeeec---cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC------CCcEEEEECCCC
Q 011924 267 YQLSKHFRF---PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD------NPDGLLVDSMTG 337 (475)
Q Consensus 267 ~~~~~~~~~---~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~------dg~i~iwd~~~~ 337 (475)
......... ....+ .+++.|+|++.++... .+.+..++.. +
T Consensus 117 ~~~~~~~~~~~~~~~~n-----------------------------d~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g 166 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCID-----------------------------DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-F 166 (319)
T ss_dssp CSCEEEECSSSSCCCEE-----------------------------EEEECTTSCEEEEECCCBTTBCCEEEEEECTT-S
T ss_pred ceeeeeccCCCcccCCc-----------------------------ceeEEeccceeecccccccccCcceeEEEecc-c
Confidence 444333322 22344 7889999987766432 2335555543 4
Q ss_pred ceEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCCceEEEE-------ecCCCceEEEEEccCCCEEEEEc
Q 011924 338 KTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVL-------KGNLGAIRSIRYTSDGRYMATAE 409 (475)
Q Consensus 338 ~~~~~l~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~~~~~~~-------~~~~~~v~~l~~spdg~~la~~~ 409 (475)
+.+..+...-.....++|+|+++.|+.+ +..+.|..||+...+...... .......-.+++.++|++.++..
T Consensus 167 ~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~ 246 (319)
T d2dg1a1 167 RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 246 (319)
T ss_dssp CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence 3444443334456789999999876555 557899999986533322211 11123356899999999888888
Q ss_pred CCCeEEEEECCCCeeEEEEec------cCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 410 PADFVHVYDVKSGYEKEQEID------FFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 410 ~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
..+.|.+|| .+|+.+..+.. +...+++++|.|++..|++...|..
T Consensus 247 ~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 297 (319)
T d2dg1a1 247 GQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE 297 (319)
T ss_dssp TTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG
T ss_pred CCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCC
Confidence 889999999 57887776653 2235789999999988888776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=6e-07 Score=87.51 Aligned_cols=301 Identities=9% Similarity=0.043 Sum_probs=171.0
Q ss_pred EEecCCCeEEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEE---------ec
Q 011924 137 VWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAG---------GF 207 (475)
Q Consensus 137 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg---------~~ 207 (475)
-|.++...+|...++.+..|+..+++...+++.... . .. ...-..++.++++++.+ +.
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~-~-----------~~-~~~~~~~SpD~~~vl~~~~~~~~~r~s~ 89 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKI-E-----------SL-RAIRYEISPDREYALFSYNVEPIYQHSY 89 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT-T-----------TT-TCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccc-c-----------cc-ccceeEECCCCCeEEEEEcccceeEeec
Confidence 377777666666778899999998887776654311 0 00 11123345588887765 34
Q ss_pred CceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec------------
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF------------ 275 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------------ 275 (475)
.|.+.++|+.+..... ........+.+....| ||+|+.++.+ .++.|.+.+..++..++....
T Consensus 90 ~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~w--SPDG~~iafv--~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d 164 (465)
T d1xfda1 90 TGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGW--GPKGQQLIFI--FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (465)
T ss_dssp CSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCB--CSSTTCEEEE--ETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred cccEEEEEccCCceee-ccCccCCccccceeee--ccCCceEEEE--ecceEEEEecCCCceEEEecccCcceeeccccc
Confidence 6789999998765431 1111222334555677 9999984444 366788888766554433221
Q ss_pred ----------cccEEeccCCceEEEE----------------------------------------EEeecccceEEEEe
Q 011924 276 ----------PWPVNVSSSYCIILLC----------------------------------------RLLNFMTEKVIICL 305 (475)
Q Consensus 276 ----------~~~v~~s~~~~~l~~~----------------------------------------~v~d~~~~~~~~~~ 305 (475)
...+.+||+|..|+.+ .++|+.++......
T Consensus 165 ~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~ 244 (465)
T d1xfda1 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (465)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred hhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEE
Confidence 1234489999988632 33344332211110
Q ss_pred e----------eeeeEEECCCCcEEEEEeC----CCcEEEEECCCCceEEEeecC-CCCe----EEEEEecCCCEEEE--
Q 011924 306 L----------CLQHSSQSPDGKLLIIVGD----NPDGLLVDSMTGKTIASLCGH-LDFS----FASAWHPNGVTFAT-- 364 (475)
Q Consensus 306 ~----------~i~~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~l~~h-~~~v----~~~~~sp~g~~l~t-- 364 (475)
. -+..+.|+|++++++.... ...+.++|..+|+....+... ..+| ....|+|+|+.++.
T Consensus 245 ~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~ 324 (465)
T d1xfda1 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (465)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred eccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEE
Confidence 0 1346889999987766532 235788999999876555432 2222 34679999985432
Q ss_pred Ee-CCC--eEEEEECC-----CCCceEEEEecCCCceEEE-EEccCCCEEE-EEcCC--CeEEEEEC--CCCeeEEEEe-
Q 011924 365 GN-QDK--TCRIWDLR-----NLSESVAVLKGNLGAIRSI-RYTSDGRYMA-TAEPA--DFVHVYDV--KSGYEKEQEI- 429 (475)
Q Consensus 365 ~s-~dg--~v~iwd~~-----~~~~~~~~~~~~~~~v~~l-~~spdg~~la-~~~~d--g~i~iwd~--~~~~~~~~~~- 429 (475)
.+ .+| .+...++. ..+..+..++...-.|..+ +|+++++.|. +|..+ +.-++|.+ ..+.....+.
T Consensus 325 ~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~ 404 (465)
T d1xfda1 325 AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (465)
T ss_dssp EECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred eeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeecc
Confidence 22 333 23333321 1133344455445556665 6888887665 44433 23345544 3332222111
Q ss_pred --ccCCCeEEEEEcCCCCeEEEEEecCC
Q 011924 430 --DFFGEISGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 430 --~~~~~i~~l~fspdg~~l~~~~~D~~ 455 (475)
........+.|||+|++++..+....
T Consensus 405 ~~~~~~~~~~~~~S~~~~y~v~~~s~~~ 432 (465)
T d1xfda1 405 DLVENCTYFSASFSHSMDFFLLKCEGPG 432 (465)
T ss_dssp TSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeecCC
Confidence 23345678999999999997655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=8e-06 Score=73.53 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=125.3
Q ss_pred CcEEEEE-ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeec--
Q 011924 199 DKLLVAG-GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF-- 275 (475)
Q Consensus 199 ~~~lvsg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-- 275 (475)
+..+++. +.++.|..++... . ...............+++ .++|.. +++....+.+.+++.. ++.+..+..
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g-~--~~~~~~~~~~~~p~~~av--d~~G~i-~v~~~~~~~~~~~~~~-g~~~~~~g~~~ 154 (279)
T d1q7fa_ 82 GDIIVTERSPTHQIQIYNQYG-Q--FVRKFGATILQHPRGVTV--DNKGRI-IVVECKVMRVIIFDQN-GNVLHKFGCSK 154 (279)
T ss_dssp TEEEEEECGGGCEEEEECTTS-C--EEEEECTTTCSCEEEEEE--CTTSCE-EEEETTTTEEEEECTT-SCEEEEEECTT
T ss_pred cccceeccCCccccccccccc-c--ceeecCCCcccccceecc--ccCCcE-EEEeeccceeeEeccC-Cceeecccccc
Confidence 4444433 4556676666432 1 112232333445567777 888875 6666666778888764 555555542
Q ss_pred -cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEE
Q 011924 276 -PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFA 352 (475)
Q Consensus 276 -~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~--~h~~~v~~ 352 (475)
..... .+++.++|+++++....+.|++|+. +|+.+..+. +.......
T Consensus 155 ~~~~~~-----------------------------~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~g 204 (279)
T d1q7fa_ 155 HLEFPN-----------------------------GVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIG 204 (279)
T ss_dssp TCSSEE-----------------------------EEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEE
T ss_pred cccccc-----------------------------eeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcc
Confidence 22333 7889999999888888899999996 577777763 34566889
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCCCeEEEEECCCC
Q 011924 353 SAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 422 (475)
Q Consensus 353 ~~~sp~g~~l~t~s~-dg~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~ 422 (475)
+++.|+|+++++-.. ++.|.+|+.. ++.+..+... ....+.+++.|+|++++ ++.++.|++|...+.
T Consensus 205 iavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 205 VGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred cccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 999999997777554 4579999863 6666666433 24578999999997554 557899999998764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.8e-07 Score=91.36 Aligned_cols=211 Identities=13% Similarity=0.110 Sum_probs=127.4
Q ss_pred ecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEE--------eCCCeEEEEECCCCeeeeeee---
Q 011924 206 GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS--------NNDCGVRDFDMGKYQLSKHFR--- 274 (475)
Q Consensus 206 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~--------s~dg~v~iwd~~~~~~~~~~~--- 274 (475)
..+|.|.+|++.+...........-..-.+....+ ||+++.+++.. +..+.+.++|+.++.......
T Consensus 34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~ 111 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV 111 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred eCCCcEEEEECCCCCEEEEEcCccccccccceeEE--CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC
Confidence 45778999998766654222111112223455556 99999855543 335678899998876543322
Q ss_pred ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEee-cCCCC----
Q 011924 275 FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDF---- 349 (475)
Q Consensus 275 ~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~-~h~~~---- 349 (475)
....+. ...|||+|+.||.+. ++.|++.+..++..++... +..+.
T Consensus 112 ~~~~l~-----------------------------~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG 161 (465)
T d1xfda1 112 SNAKLQ-----------------------------YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (465)
T ss_dssp CSCCCS-----------------------------BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred Cccccc-----------------------------eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeecc
Confidence 122333 568999999999885 5679999887776655443 21111
Q ss_pred -------------eEEEEEecCCCEEEEEeCC-Ce---------------------------------EEEEECCCCCce
Q 011924 350 -------------SFASAWHPNGVTFATGNQD-KT---------------------------------CRIWDLRNLSES 382 (475)
Q Consensus 350 -------------v~~~~~sp~g~~l~t~s~d-g~---------------------------------v~iwd~~~~~~~ 382 (475)
-.++-|||||++||....| .. +.|+|+......
T Consensus 162 ~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~ 241 (465)
T d1xfda1 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (465)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEE
Confidence 2467899999999987532 22 334444321111
Q ss_pred EEEEe-----cCCCceEEEEEccCCCEEEEEcC-C---CeEEEEECCCCeeEEEEecc-CCCe----EEEEEcCCCCeEE
Q 011924 383 VAVLK-----GNLGAIRSIRYTSDGRYMATAEP-A---DFVHVYDVKSGYEKEQEIDF-FGEI----SGISFSPDTESLF 448 (475)
Q Consensus 383 ~~~~~-----~~~~~v~~l~~spdg~~la~~~~-d---g~i~iwd~~~~~~~~~~~~~-~~~i----~~l~fspdg~~l~ 448 (475)
..... ....-+..+.|+|++++++.... + ..|.++|..+|......... .+.| ....|+|||+.++
T Consensus 242 ~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~ 321 (465)
T d1xfda1 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (465)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence 11111 01123677899999987665433 2 26888999998766544432 2222 3568999998654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.79 E-value=1.6e-07 Score=84.27 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=116.4
Q ss_pred eEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCee-eeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC
Q 011924 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-SKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS 314 (475)
Q Consensus 236 ~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s 314 (475)
..|++ .++|+..++..+..+.+..++...... ...+....... .++++
T Consensus 17 ~~vav--d~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-----------------------------gvav~ 65 (260)
T d1rwia_ 17 SGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-----------------------------GLAVD 65 (260)
T ss_dssp EEEEE--CTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-----------------------------CEEEC
T ss_pred CEEEE--cCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-----------------------------EEEEc
Confidence 56777 899986444445556676665543221 11111112223 78899
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceE
Q 011924 315 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 394 (475)
Q Consensus 315 p~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 394 (475)
++|+++++....+.+++++..++..+.... ......++++.++++++++-.....+..++........... .......
T Consensus 66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ 143 (260)
T d1rwia_ 66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPD 143 (260)
T ss_dssp TTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCC
T ss_pred CCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcc
Confidence 999988776666666666554554443332 23567899999999988877777778888775422222211 2234567
Q ss_pred EEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCeEEEEEcCCCCeEEEE
Q 011924 395 SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 450 (475)
Q Consensus 395 ~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~~ 450 (475)
.++++|+|+++++...++.|..++..................+|+++++|+.+++.
T Consensus 144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd 199 (260)
T d1rwia_ 144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE 199 (260)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred eeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeee
Confidence 89999999988888888999999977554433333455678999999998755544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.74 E-value=8.1e-06 Score=74.91 Aligned_cols=110 Identities=6% Similarity=0.061 Sum_probs=78.6
Q ss_pred eEEECCCCc-----EEEEEeCCCcEEEEECCCCceEE------Eeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 011924 310 HSSQSPDGK-----LLIIVGDNPDGLLVDSMTGKTIA------SLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 377 (475)
Q Consensus 310 ~~~~sp~g~-----~l~~~~~dg~i~iwd~~~~~~~~------~l~~-h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~ 377 (475)
.++|+|++. ++++-+..+.|..|++.....+. .+.+ +....-.+++.++|++.++....+.|.+||.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 778888764 44445677888888876332222 2222 22345679999999988888888999999986
Q ss_pred CCCceEEEEecCCCceEEEEEccCCCEE-EEEcCCCeEEEEECC
Q 011924 378 NLSESVAVLKGNLGAIRSIRYTSDGRYM-ATAEPADFVHVYDVK 420 (475)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~spdg~~l-a~~~~dg~i~iwd~~ 420 (475)
. +..+..+......+++++|.|+++.| ++.+.++.|..+++.
T Consensus 256 ~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 256 G-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp C-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred C-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 5 55666666666678899999999754 556677888888864
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.70 E-value=4.5e-06 Score=76.19 Aligned_cols=233 Identities=11% Similarity=0.040 Sum_probs=140.2
Q ss_pred cceeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecC
Q 011924 133 LRNLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ 208 (475)
Q Consensus 133 lr~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~d 208 (475)
+.++.+.++.. ||++ .+++|..|++.. +...+.... ..+.++++ +|++++++..+
T Consensus 30 ~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g-~~~~~~~~~-------------------~~~~gla~~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 30 LENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHATVE-------------------GKVSGLAFTSNGDLVATGWNA 88 (302)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEEECS-------------------SEEEEEEECTTSCEEEEEECT
T ss_pred cCCEEECCCCC-EEEEeCCCCEEEEEeCCC-CEEEEEcCC-------------------CCcceEEEcCCCCeEEEecCC
Confidence 34566666655 5554 357788887553 333322211 24677887 88999988888
Q ss_pred ceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceE
Q 011924 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCII 288 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l 288 (475)
+.+..++....................+.+.+ .++|.. +++.+..+.+..++...+..................
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~--~~~g~~-~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--- 162 (302)
T d2p4oa1 89 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITP--LSDTQY-LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES--- 162 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTCSCEEEEEE--SSSSEE-EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC---
T ss_pred ceEEEEEecccccceeeccccCCccccceeEE--ccCCCE-EeeccccccceeeeccCCcceeEecCCccceeeccC---
Confidence 88888887654433322333344556788888 899874 777778888988888776543322211000000000
Q ss_pred EEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceE---EEeecCCCCeEEEEEecCCCEEEEE
Q 011924 289 LLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI---ASLCGHLDFSFASAWHPNGVTFATG 365 (475)
Q Consensus 289 ~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~l~~h~~~v~~~~~sp~g~~l~t~ 365 (475)
.......++++. +.++++.+..+.|..+++...... ..+. .......+++.++|++.++.
T Consensus 163 ---------------~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~ 225 (302)
T d2p4oa1 163 ---------------VFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 225 (302)
T ss_dssp ---------------CSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred ---------------cccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEE
Confidence 000001445543 344555567788888887644322 1121 23345679999999988888
Q ss_pred eCCCeEEEEECCCCCceEEEE--ecCCCceEEEEE---ccCCCEEEEEcCC
Q 011924 366 NQDKTCRIWDLRNLSESVAVL--KGNLGAIRSIRY---TSDGRYMATAEPA 411 (475)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~l~~---spdg~~la~~~~d 411 (475)
..+++|..++.. ++..... .......++++| +||++.|+.++..
T Consensus 226 ~~~~~V~~i~p~--G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 226 HIYNSVVRIAPD--RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp BTTCCEEEECTT--CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCCcEEEECCC--CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 888999999874 3433333 233346789999 6788888766544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.68 E-value=5.3e-05 Score=68.58 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=138.8
Q ss_pred eeEEecCCCeEEEe--cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEecCce
Q 011924 135 NLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (475)
Q Consensus 135 ~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~~dg~ 210 (475)
..+|......||++ ....|..|+..+++... +.+. ..+.++++ ++++++ ++.+ .
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~~-------------------~~~~~i~~~~dg~l~v-a~~~-g 79 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HALP-------------------FMGSALAKISDSKQLI-ASDD-G 79 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECS-------------------SCEEEEEEEETTEEEE-EETT-E
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EECC-------------------CCcEEEEEecCCCEEE-EEeC-c
Confidence 34577777778875 46889999988775432 3221 24567777 555555 4555 5
Q ss_pred EEEEeCCCCCceEEEeeecC-CCCceeEEEEEeCCCCCeEEEEEeC----CCeEEEEECCCCeeeeeeeccccEEeccCC
Q 011924 211 LICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNN----DCGVRDFDMGKYQLSKHFRFPWPVNVSSSY 285 (475)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~~~s~~g~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~ 285 (475)
|..++..+.+.......... .....+.+.+ .|+|.. .++... .+.-.+|.+..++....+......+
T Consensus 80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v--d~~G~i-w~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~N----- 151 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAELESDLPGNRSNDGRM--HPSGAL-WIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPN----- 151 (295)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEE--CTTSCE-EEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEE-----
T ss_pred cEEeecccceeeEEeeeecCCCcccceeeEE--CCCCCE-EEEeccccccccceeEeeecCCcEEEEeeccCCcc-----
Confidence 88889876654422211111 1224677777 999985 443321 2234556655565544444333444
Q ss_pred ceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCC------Cce--EEEeecCCCCeEEEEEe
Q 011924 286 CIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMT------GKT--IASLCGHLDFSFASAWH 356 (475)
Q Consensus 286 ~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~------~~~--~~~l~~h~~~v~~~~~s 356 (475)
.++|+++++.+..+ +..+.|..+++.. ++. ...+.+..+....+++.
T Consensus 152 ------------------------g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD 207 (295)
T d2ghsa1 152 ------------------------SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD 207 (295)
T ss_dssp ------------------------EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred ------------------------eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEc
Confidence 88999999876555 4577888887642 111 12233445567889999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCceEEEEEc-cCCCEEEEE
Q 011924 357 PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT-SDGRYMATA 408 (475)
Q Consensus 357 p~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~la~~ 408 (475)
.+|++.++.-..+.|..||.. ++.+..+.-....+++++|- |+.+.|++.
T Consensus 208 ~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 208 AEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp TTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 999988887778899999964 67888887766779999995 677766543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.65 E-value=2e-05 Score=71.50 Aligned_cols=214 Identities=16% Similarity=0.108 Sum_probs=141.3
Q ss_pred cCcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeecc-
Q 011924 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 276 (475)
Q Consensus 198 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 276 (475)
++.++.+=-..+.|..|+..+.... .. .....+.++.+ .++|.. +++ +.+ .+.++|..+++........
T Consensus 29 ~~~l~wvDi~~~~I~r~d~~~g~~~---~~--~~~~~~~~i~~--~~dg~l-~va-~~~-gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 29 SGTAWWFNILERELHELHLASGRKT---VH--ALPFMGSALAK--ISDSKQ-LIA-SDD-GLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE---EE--ECSSCEEEEEE--EETTEE-EEE-ETT-EEEEEETTTCCEEEEECSST
T ss_pred CCEEEEEECCCCEEEEEECCCCeEE---EE--ECCCCcEEEEE--ecCCCE-EEE-EeC-ccEEeecccceeeEEeeeec
Confidence 3445555556788888887764432 11 12345678877 777763 444 444 5889999888764433211
Q ss_pred ----ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC----CCcEEEEECCCCceEEEeecCCC
Q 011924 277 ----WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD----NPDGLLVDSMTGKTIASLCGHLD 348 (475)
Q Consensus 277 ----~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~l~~h~~ 348 (475)
..++ .+.+.|+|++.++... .+.-.+|.+..++....+.+ ..
T Consensus 99 ~~~~~~~n-----------------------------d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~ 148 (295)
T d2ghsa1 99 DLPGNRSN-----------------------------DGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-IS 148 (295)
T ss_dssp TCTTEEEE-----------------------------EEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ES
T ss_pred CCCcccce-----------------------------eeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cC
Confidence 1234 7889999997776532 23456777767765554443 34
Q ss_pred CeEEEEEecCCCEEEE-EeCCCeEEEEECCCCC-----ce--EEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECC
Q 011924 349 FSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLS-----ES--VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 420 (475)
Q Consensus 349 ~v~~~~~sp~g~~l~t-~s~dg~v~iwd~~~~~-----~~--~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~ 420 (475)
....++|+|+++.++. -+..+.|..+++.... +. .....+..+....+++..+|++.++.-..+.|..|| .
T Consensus 149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p 227 (295)
T d2ghsa1 149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-T 227 (295)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-T
T ss_pred CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-C
Confidence 5678999999986654 4567889888874211 11 122233455678999999999777766778899999 5
Q ss_pred CCeeEEEEeccCCCeEEEEEc-CCCCeEEEEEe
Q 011924 421 SGYEKEQEIDFFGEISGISFS-PDTESLFIGVW 452 (475)
Q Consensus 421 ~~~~~~~~~~~~~~i~~l~fs-pdg~~l~~~~~ 452 (475)
.|+.+..+......+++++|- ||.+.|++.+.
T Consensus 228 ~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 228 DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 677777776555679999996 78888887754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.48 E-value=3.7e-05 Score=70.51 Aligned_cols=187 Identities=8% Similarity=0.014 Sum_probs=117.2
Q ss_pred eeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEE
Q 011924 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQ 313 (475)
Q Consensus 235 v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~ 313 (475)
+..++| .++|+ ++++-...+.|..|+..++.....+. ...... .+++
T Consensus 42 lEG~~~--D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-----------------------------gla~ 89 (319)
T d2dg1a1 42 LEGLNF--DRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-----------------------------AIKI 89 (319)
T ss_dssp EEEEEE--CTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-----------------------------EEEE
T ss_pred cEeCEE--CCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-----------------------------EEEE
Confidence 356778 88987 47777788889888887765554443 444556 8999
Q ss_pred CCCCcEEEEEeC----CCcEEEEECCCCceEEEeec--CCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCCc
Q 011924 314 SPDGKLLIIVGD----NPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQ------DKTCRIWDLRNLSE 381 (475)
Q Consensus 314 sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~t~s~------dg~v~iwd~~~~~~ 381 (475)
+++|+++++... .+.+...+...+........ -......+++.|+|++.++... .+.+..++.. +.
T Consensus 90 ~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~ 167 (319)
T d2dg1a1 90 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FR 167 (319)
T ss_dssp CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SC
T ss_pred CCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc--cc
Confidence 999998877643 23455556555554433332 1235678999999997776432 2234445543 34
Q ss_pred eEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCC-eeE---EEE----eccCCCeEEEEEcCCCCeEEEEEe
Q 011924 382 SVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSG-YEK---EQE----IDFFGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 382 ~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~-~~~---~~~----~~~~~~i~~l~fspdg~~l~~~~~ 452 (475)
.+..+.......+.++|+|+++.|+.+ +..+.|+.|++... ... ... .......-+|++.++|+..++...
T Consensus 168 ~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 168 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC
Confidence 444444334456789999999866544 56789999997532 111 111 111234678999999985555443
Q ss_pred cCC
Q 011924 453 DRT 455 (475)
Q Consensus 453 D~~ 455 (475)
.+.
T Consensus 248 ~g~ 250 (319)
T d2dg1a1 248 QGR 250 (319)
T ss_dssp TTE
T ss_pred CCE
Confidence 433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.35 E-value=9.4e-05 Score=65.57 Aligned_cols=219 Identities=9% Similarity=0.032 Sum_probs=117.7
Q ss_pred EEEc--CcEEEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCC-----eEEEEECCCC
Q 011924 195 LAVK--DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDMGKY 267 (475)
Q Consensus 195 l~~~--~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg-----~v~iwd~~~~ 267 (475)
++++ |+.+|.. .+|.|.+.++...... ++ ..+.+.+....| ||+|+.++.+...++ .|.+++..++
T Consensus 6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~---~L-t~~~~~~~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTR---KI-VSNLGVINNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp EEEEEETTEEEEE-ETTEEEEEETTTCCEE---EE-ECSSSEEEEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred cCCCCCCCEEEEE-eCCcEEEEECCCCCEE---EE-ecCCCcccCEEE--CCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 4455 8877765 4678888888865543 22 334556777788 999998665553332 3677788777
Q ss_pred eeeeeee----------ccccEEeccCCceEEE------------EEEeecccceEEEEeeeeeeEEECCCCcEEEEEe-
Q 011924 268 QLSKHFR----------FPWPVNVSSSYCIILL------------CRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVG- 324 (475)
Q Consensus 268 ~~~~~~~----------~~~~v~~s~~~~~l~~------------~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~- 324 (475)
+..+... ......++|++..++. +...+...+.............+.+++..++...
T Consensus 79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT 158 (281)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred ceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeec
Confidence 6554321 2234557888887752 3444444444433222222233444444333322
Q ss_pred CC-----------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCCceEEEEecCCC
Q 011924 325 DN-----------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCRIWDLRNLSESVAVLKGNLG 391 (475)
Q Consensus 325 ~d-----------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg--~v~iwd~~~~~~~~~~~~~~~~ 391 (475)
.. ....+.....+.. .....+........++++. .+.....++ .|.++|+.. .....+..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g--~~~~~lt~~~~ 234 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDG--KDLRKHTSFTD 234 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTS--CSCEECCCCCS
T ss_pred cccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEeCCC--CceEEeecCCC
Confidence 11 1111222112222 2222233445555666653 233333333 577777754 33444443322
Q ss_pred ceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEE
Q 011924 392 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 426 (475)
Q Consensus 392 ~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~ 426 (475)
.....|+|||+.|+... ++.|+++|+.+++...
T Consensus 235 -~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 235 -YYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEK 267 (281)
T ss_dssp -SCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEE
T ss_pred -cccccCcCCCCEEEEEe-CCEEEEEECCCCCEEE
Confidence 22346899999887644 6789999999886543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.17 E-value=5.3e-05 Score=67.28 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCC--CCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEE
Q 011924 243 SPS--GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLL 320 (475)
Q Consensus 243 s~~--g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l 320 (475)
+|+ |+.++.++ ++.|.+.|+.+++..+....+.... ..+|||||+.|
T Consensus 7 sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~Lt~~~~~~~-----------------------------~p~~SPDG~~i 55 (281)
T d1k32a2 7 NPDIHGDRIIFVC--CDDLWEHDLKSGSTRKIVSNLGVIN-----------------------------NARFFPDGRKI 55 (281)
T ss_dssp EEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSSEEE-----------------------------EEEECTTSSEE
T ss_pred CCCCCCCEEEEEe--CCcEEEEECCCCCEEEEecCCCccc-----------------------------CEEECCCCCEE
Confidence 788 98755553 4568888998887765444666666 88999999999
Q ss_pred EEEeC-C-----CcEEEEECCCCceEEEeecC-------CCCeEEEEEecCCCEEEEEe
Q 011924 321 IIVGD-N-----PDGLLVDSMTGKTIASLCGH-------LDFSFASAWHPNGVTFATGN 366 (475)
Q Consensus 321 ~~~~~-d-----g~i~iwd~~~~~~~~~l~~h-------~~~v~~~~~sp~g~~l~t~s 366 (475)
|.... + ..|.+++..+++... +..+ ........|+|+|+.|+...
T Consensus 56 af~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 56 AIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCccccccccccCCCCCEEEEEE
Confidence 87642 2 247788887776543 3222 23456789999999888753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.04 E-value=0.0022 Score=59.25 Aligned_cols=220 Identities=9% Similarity=0.026 Sum_probs=126.4
Q ss_pred cCcEEEEEe-cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC------------------Ce
Q 011924 198 KDKLLVAGG-FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------------------CG 258 (475)
Q Consensus 198 ~~~~lvsg~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d------------------g~ 258 (475)
+|++|++.. .++.|.+.|+...+......+ .....+..+.....|+-.+ ++..+.. +.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i--Pn~~~~HG~r~~~~p~T~Y-V~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI--PNAKGIHGLRPQKWPRSNY-VFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC--SSCCSEEEEEECCSSBCSE-EEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEec--CCCCCCceeecccCCCeEE-EEccCccccccCCCCccccchhhcceE
Confidence 688877765 678999999987665422222 2223345555522344444 4443332 23
Q ss_pred EEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCC------------
Q 011924 259 VRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDN------------ 326 (475)
Q Consensus 259 v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------------ 326 (475)
+.++|..+.+..........+. .++++|+|+++++.+.+
T Consensus 175 ~t~ID~~tm~V~~QV~V~g~ld-----------------------------~~~~s~dGK~af~TsyNSE~g~~l~e~ta 225 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVSGNLD-----------------------------NCDADYEGKWAFSTSYNSEKGMTLPEMTA 225 (459)
T ss_dssp EEEEETTTTEEEEEEEESSCCC-----------------------------CEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred EEEEecCCceEEEEeeeCCChh-----------------------------ccccCCCCCEEEEEeccccCCcchhhccc
Confidence 5566777777666655444444 77888888887776532
Q ss_pred --------------------------CcEEEEECCC--C-ceEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEC
Q 011924 327 --------------------------PDGLLVDSMT--G-KTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDL 376 (475)
Q Consensus 327 --------------------------g~i~iwd~~~--~-~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~-dg~v~iwd~ 376 (475)
+.+.+.|.+. + ..+..+.. ......+..+|||+++++++. +.+|.|+|+
T Consensus 226 ~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~ 304 (459)
T d1fwxa2 226 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 304 (459)
T ss_dssp CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred ccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence 2234445442 1 12222221 123456899999999988875 889999999
Q ss_pred CCCC----------ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCC----------eeEEEEeccCCCeE
Q 011924 377 RNLS----------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----------YEKEQEIDFFGEIS 436 (475)
Q Consensus 377 ~~~~----------~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~i~ 436 (475)
++.. ..+..-....-.....+|+..|.-..+.--|..|.-|++... ..+..+.-| -.+-
T Consensus 305 ~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y~~g 383 (459)
T d1fwxa2 305 TRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPG 383 (459)
T ss_dssp GGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEE
T ss_pred hhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc-cCCC
Confidence 6321 111111112223457789988865555667999999998532 222222222 1222
Q ss_pred EE------EEcCCCCeEEEEE
Q 011924 437 GI------SFSPDTESLFIGV 451 (475)
Q Consensus 437 ~l------~fspdg~~l~~~~ 451 (475)
.+ ...|+|++|++..
T Consensus 384 h~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 384 HLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEETTTTSTTCCSSEEEEEE
T ss_pred CCccCcCCcCCCCCCEEEEec
Confidence 22 2468999998873
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.98 E-value=0.00098 Score=61.71 Aligned_cols=170 Identities=11% Similarity=-0.025 Sum_probs=107.5
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeeeeeee--ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEEC--CCCcEE
Q 011924 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQS--PDGKLL 320 (475)
Q Consensus 245 ~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~s--p~g~~l 320 (475)
+|+++++.-..+..|.+-|+.+++...... ...... .+... |+-.++
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-----------------------------G~r~~~~p~T~YV 148 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-----------------------------GLRPQKWPRSNYV 148 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-----------------------------EEEECCSSBCSEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-----------------------------eeecccCCCeEEE
Confidence 788888888899999999999999876554 333444 44444 445566
Q ss_pred EEEeCC------------------CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCC-------------
Q 011924 321 IIVGDN------------------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK------------- 369 (475)
Q Consensus 321 ~~~~~d------------------g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg------------- 369 (475)
+.++.. +.+..+|..+.+....+.- ......++++|+|+++++.+.+.
T Consensus 149 ~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e 227 (459)
T d1fwxa2 149 FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 227 (459)
T ss_dssp EEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred EccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhccccc
Confidence 655542 2356788888877666553 23456789999999999876431
Q ss_pred -------------------------eEEEEECCCC--CceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCC
Q 011924 370 -------------------------TCRIWDLRNL--SESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKS 421 (475)
Q Consensus 370 -------------------------~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~ 421 (475)
.+.+-|.+.. ...++.+.... ....+.++|||+++++++ .+.+|.|+|+++
T Consensus 228 ~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 228 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred ceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 1344444321 12333333333 356889999999987766 478999999864
Q ss_pred Ce-----------eEEEEeccCCCeEEEEEcCCCC
Q 011924 422 GY-----------EKEQEIDFFGEISGISFSPDTE 445 (475)
Q Consensus 422 ~~-----------~~~~~~~~~~~i~~l~fspdg~ 445 (475)
-. .+.......-....-+|+..|.
T Consensus 307 i~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~ 341 (459)
T d1fwxa2 307 FDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN 341 (459)
T ss_dssp HHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE
T ss_pred hhhhhcccCCccccEEeecccCcCccccccCCCce
Confidence 21 1111111223456677877774
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=0.0056 Score=53.65 Aligned_cols=215 Identities=12% Similarity=-0.009 Sum_probs=129.1
Q ss_pred eEEEEEE--cCcEEE-EEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCC
Q 011924 191 QVSTLAV--KDKLLV-AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (475)
Q Consensus 191 ~v~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~ 267 (475)
.+.+|++ ..+.|+ +-...+.|...+++..... .+..........+++ ..-+..+..+-...+.|.+.++...
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~---~v~~~~~~~p~~iAv--D~~~~~lY~~d~~~~~I~~~~~dg~ 111 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---TIIRQDLGSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGT 111 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---EEECTTCCCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE---EEEEeccccccEEEE--eccCCeEEEeccCCCEEEEEecCCc
Confidence 4667777 344444 4456788888888755443 222223345677888 5555555667667789999998754
Q ss_pred eeeeeee-ccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---CCcEEEEECCCCceEEEe
Q 011924 268 QLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 268 ~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~l 343 (475)
.....+. ...... .+++.|...++..... .+.|.-.++.........
T Consensus 112 ~~~~l~~~~l~~p~-----------------------------~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~ 162 (263)
T d1npea_ 112 QRRVLFDTGLVNPR-----------------------------GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162 (263)
T ss_dssp SCEEEECSSCSSEE-----------------------------EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred eEEEEecccccCCc-----------------------------EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee
Confidence 4322222 223445 8889996666655432 223444455433333223
Q ss_pred ecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCC
Q 011924 344 CGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKS 421 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~ 421 (475)
...-....++++.+.++.|+.+ ...+.|...|+.. ......+.+. ....++++. +.+|..+ ...+.|...|..+
T Consensus 163 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eecccccceEEEeecCcEEEEEeCCCCEEEEEECCC-CCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence 3334567899999877777655 4577899999853 3333333333 334577775 4455444 4668899999988
Q ss_pred CeeEEEEecc-CCCeEEEEEcCC
Q 011924 422 GYEKEQEIDF-FGEISGISFSPD 443 (475)
Q Consensus 422 ~~~~~~~~~~-~~~i~~l~fspd 443 (475)
++....+... ...+.+|...++
T Consensus 239 g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 239 SKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp TEEEEEECCSSCCCCCCEEEECS
T ss_pred CccceEECCCCCCCcceEEEeCC
Confidence 8877666533 345667766554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.70 E-value=0.0085 Score=52.46 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=116.7
Q ss_pred cCCCeEEEecCCeEEEEecCCCC-ceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEEEEe-------cCc
Q 011924 140 TSKHDVYLMSHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGG-------FQG 209 (475)
Q Consensus 140 ~~~~~v~~~~~~~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lvsg~-------~dg 209 (475)
.+.+.|.+.....|+||+..... ..++++..+ .+.+.+|..... +.++++..| -.|
T Consensus 111 is~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~--------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G 176 (327)
T d1utca2 111 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHS--------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176 (327)
T ss_dssp SSSSEEEEECSSEEEEEESSSSCCCEEEEECCG--------------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred cCCCEEEEEcCCceEEEcccCCCCchhhhhhcc--------------cccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence 56677888999999999963322 234444321 234567777777 566665433 248
Q ss_pred eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEe---CCCeEEEEECCCCee-eeeee-ccccEEeccC
Q 011924 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---NDCGVRDFDMGKYQL-SKHFR-FPWPVNVSSS 284 (475)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s---~dg~v~iwd~~~~~~-~~~~~-~~~~v~~s~~ 284 (475)
.+.+|+++... .+.+.+|.+.-..+.+.-.+....+++.+. ..+.+++.++.+... -..+. ..-.+.|.|.
T Consensus 177 ~mQLYS~er~~----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe 252 (327)
T d1utca2 177 AMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 252 (327)
T ss_dssp EEEEEETTTTE----EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred EEEEEEeccCc----CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence 88999987643 244555544433333311111122333332 225677777744210 01110 0000111110
Q ss_pred CceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEE
Q 011924 285 YCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 364 (475)
Q Consensus 285 ~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t 364 (475)
. ...-++ ++.+|+.-..+...+.-|.+++||+.++.++..-+--.+.|+..+-+....-+++
T Consensus 253 a-----------~~DFPv-------amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~ 314 (327)
T d1utca2 253 A-----------QNDFPV-------AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG 314 (327)
T ss_dssp C-----------TTCCEE-------EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEE
T ss_pred c-----------cCCcEE-------EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEE
Confidence 0 000000 7889998889999999999999999999998877767788887777777667777
Q ss_pred EeCCCeEEE
Q 011924 365 GNQDKTCRI 373 (475)
Q Consensus 365 ~s~dg~v~i 373 (475)
.+.+|.|..
T Consensus 315 VNr~GqVl~ 323 (327)
T d1utca2 315 VNRKGQVLS 323 (327)
T ss_dssp EETTSEEEE
T ss_pred ECCCCeEEE
Confidence 778887653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.017 Score=50.30 Aligned_cols=217 Identities=7% Similarity=-0.027 Sum_probs=128.1
Q ss_pred EEEEEecCceEEEEeCCCCCce--EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccc
Q 011924 201 LLVAGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPW 277 (475)
Q Consensus 201 ~lvsg~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~ 277 (475)
+|+.+. .+.|+-..++..... ........+...+.+|++ .+.++.++.+-...+.|+..++.......... ...
T Consensus 3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~--D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEE--EeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 444433 356766666543311 011112222334566777 77777767776778889888887654433332 223
Q ss_pred cEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEE-EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEe
Q 011924 278 PVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLI-IVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 356 (475)
Q Consensus 278 ~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~-~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~s 356 (475)
.+. ++++..-+..|. +-...+.|.+.++........+......+..++++
T Consensus 80 ~p~-----------------------------~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vd 130 (263)
T d1npea_ 80 SPE-----------------------------GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130 (263)
T ss_dssp CEE-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred ccc-----------------------------EEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEe
Confidence 445 888887555555 44566789999987554433344445678999999
Q ss_pred cCCCEEEEEeCC-CeEEEE--ECCCCCceEEEEecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEeccC
Q 011924 357 PNGVTFATGNQD-KTCRIW--DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFF 432 (475)
Q Consensus 357 p~g~~l~t~s~d-g~v~iw--d~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~ 432 (475)
|...+++..... +..+|| ++.. ................+++.+.++.|..+ ...+.|...++........+.+ .
T Consensus 131 p~~g~ly~t~~~~~~~~I~r~~~dG-~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~ 208 (263)
T d1npea_ 131 PVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-L 208 (263)
T ss_dssp TTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-C
T ss_pred cccCcEEEeecCCCCcEEEEecCCC-CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC-C
Confidence 966666654332 233454 5533 22233333344567899999888777665 4568899999865443333333 3
Q ss_pred CCeEEEEEcCCCCeEEEEEec
Q 011924 433 GEISGISFSPDTESLFIGVWD 453 (475)
Q Consensus 433 ~~i~~l~fspdg~~l~~~~~D 453 (475)
....+|++. +.+|+.+.+.
T Consensus 209 ~~P~~lav~--~~~lYwtd~~ 227 (263)
T d1npea_ 209 QYPFAVTSY--GKNLYYTDWK 227 (263)
T ss_dssp CSEEEEEEE--TTEEEEEETT
T ss_pred CCcEEEEEE--CCEEEEEECC
Confidence 345678775 5678777654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.024 Score=49.48 Aligned_cols=240 Identities=10% Similarity=-0.012 Sum_probs=135.0
Q ss_pred EEEecCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEE--cCcEEE-EEecCceEEEEeCCCCCc
Q 011924 145 VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLV-AGGFQGELICKHLDRPGV 221 (475)
Q Consensus 145 v~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~lv-sg~~dg~i~vw~~~~~~~ 221 (475)
|+++....|...+..+.....++. . ...+.+|++ ..+.|+ +=...+.|...+++....
T Consensus 4 Ll~s~~~~I~~~~l~~~~~~~~~~-----------------~--~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~ 64 (266)
T d1ijqa1 4 LFFTNRHEVRKMTLDRSEYTSLIP-----------------N--LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64 (266)
T ss_dssp EEEECBSSEEEEETTSCCCEEEEC-----------------S--CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred EEEECCCeEEEEECCCCcceeeeC-----------------C--CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC
Confidence 455555667666665444343321 0 113557777 445555 444567777666654221
Q ss_pred e-EEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeee-ccccEEeccCCceEEEEEEeecccc
Q 011924 222 S-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNVSSSYCIILLCRLLNFMTE 299 (475)
Q Consensus 222 ~-~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~s~~~~~l~~~~v~d~~~~ 299 (475)
. ............+..+++ .+-+..+..+-...+.|.+.++.......... ......
T Consensus 65 ~~~~~~~~~~~~~~p~glAv--D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~------------------- 123 (266)
T d1ijqa1 65 VSSYDTVISRDIQAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR------------------- 123 (266)
T ss_dssp ---CEEEECSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-------------------
T ss_pred CcceEEEEeCCCCCcceEEE--eeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcc-------------------
Confidence 1 111222233344567777 65566667777778899999997655433333 233445
Q ss_pred eEEEEeeeeeeEEECCCCcEEEEEe--CCCcEEEEECCCCceEEEee-cCCCCeEEEEEecCCCEEEEE-eCCCeEEEEE
Q 011924 300 KVIICLLCLQHSSQSPDGKLLIIVG--DNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATG-NQDKTCRIWD 375 (475)
Q Consensus 300 ~~~~~~~~i~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~t~-s~dg~v~iwd 375 (475)
.+++.|...+|.... ..+.|.-.++. |.....+. ..-....++++.+.++.|+-+ ...++|...+
T Consensus 124 ----------~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~ 192 (266)
T d1ijqa1 124 ----------AIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (266)
T ss_dssp ----------EEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ----------eEEEEcccCeEEEeccCCCcceeEeccC-CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEE
Confidence 788988555555443 34556666664 33333443 334667899999977766665 4567899999
Q ss_pred CCCCCceEEEEecC--CCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEeccCCCeEEE
Q 011924 376 LRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGI 438 (475)
Q Consensus 376 ~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 438 (475)
+.. .......... .....++++. +.+|..+ ..++.|...+..++.....+......+.++
T Consensus 193 ~dG-~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i 255 (266)
T d1ijqa1 193 VNG-GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 255 (266)
T ss_dssp TTS-CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCE
T ss_pred CCC-CCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEE
Confidence 854 3322333222 2345567766 3445544 467889888988877665555443433333
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.52 E-value=0.021 Score=52.43 Aligned_cols=252 Identities=11% Similarity=-0.015 Sum_probs=131.3
Q ss_pred cCcEEEEEecC-----c------eEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCC-CeEEEEECC
Q 011924 198 KDKLLVAGGFQ-----G------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-CGVRDFDMG 265 (475)
Q Consensus 198 ~~~~lvsg~~d-----g------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~d-g~v~iwd~~ 265 (475)
++++++.||.. + .+.+||..+............+.....+..+ .++|.. ++.|+.+ ..+.+||..
T Consensus 30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~--~~~g~i-~v~Gg~~~~~~~~yd~~ 106 (387)
T d1k3ia3 30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM--DGNGQI-VVTGGNDAKKTSLYDSS 106 (387)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE--CTTSCE-EEECSSSTTCEEEEEGG
T ss_pred CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEE--ecCCcE-EEeecCCCcceeEecCc
Confidence 88999998853 1 3678998876654222222233333344555 788875 6666544 689999998
Q ss_pred CCeeeeeeec-----cccEEeccCCceEE------------EEEEeecccceEEEEeee------------------eee
Q 011924 266 KYQLSKHFRF-----PWPVNVSSSYCIIL------------LCRLLNFMTEKVIICLLC------------------LQH 310 (475)
Q Consensus 266 ~~~~~~~~~~-----~~~v~~s~~~~~l~------------~~~v~d~~~~~~~~~~~~------------------i~~ 310 (475)
+......-.. .......+++.++. .+.+||+.+.+....... ...
T Consensus 107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (387)
T d1k3ia3 107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186 (387)
T ss_dssp GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence 7655332111 11222334444442 467888887765432110 001
Q ss_pred EEECCCCcEEEEEeCCCcEEEEECCCCceEEEe--ec----CC--CCeEEEEEec-CCCEEEEEeCCC--------eEEE
Q 011924 311 SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL--CG----HL--DFSFASAWHP-NGVTFATGNQDK--------TCRI 373 (475)
Q Consensus 311 ~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l--~~----h~--~~v~~~~~sp-~g~~l~t~s~dg--------~v~i 373 (475)
+..-++|+.++.++..+.+.+++..+......- .. +. ..-.++.+.. +++.++.|+... ...+
T Consensus 187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~ 266 (387)
T d1k3ia3 187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI 266 (387)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred EEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeec
Confidence 223345666666666666667776655432211 10 11 1112333332 667777775321 2334
Q ss_pred EECCCCCceEEEEec-----CCCceEEEEEccCCCEEEEEcCC-----------CeEEEEECCCCeeEEEEeccCC--Ce
Q 011924 374 WDLRNLSESVAVLKG-----NLGAIRSIRYTSDGRYMATAEPA-----------DFVHVYDVKSGYEKEQEIDFFG--EI 435 (475)
Q Consensus 374 wd~~~~~~~~~~~~~-----~~~~v~~l~~spdg~~la~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~--~i 435 (475)
.++............ ....-.+....++|+++++|+.+ ..+.+||..+.+-...-..... .-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~H 346 (387)
T d1k3ia3 267 ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH 346 (387)
T ss_dssp EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred ccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccce
Confidence 443221111111111 11112345567899999988743 1578999877643221111111 12
Q ss_pred EEEEEcCCCCeEEEEEe
Q 011924 436 SGISFSPDTESLFIGVW 452 (475)
Q Consensus 436 ~~l~fspdg~~l~~~~~ 452 (475)
....+.+||+.|+.|+.
T Consensus 347 s~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 347 SISLLLPDGRVFNGGGG 363 (387)
T ss_dssp EEEEECTTSCEEEEECC
T ss_pred EEEEECCCCEEEEEeCC
Confidence 34456899999999874
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.029 Score=48.92 Aligned_cols=211 Identities=9% Similarity=-0.080 Sum_probs=124.4
Q ss_pred EEEEecCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeee---eeee--cc
Q 011924 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR--FP 276 (475)
Q Consensus 202 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~---~~~~--~~ 276 (475)
|+.+. ...|+..+++..... .+... ...+.++++ .+..+.++.+-...+.|.-.++...... .... ..
T Consensus 4 Ll~s~-~~~I~~~~l~~~~~~---~~~~~-~~~~~~id~--d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 4 LFFTN-RHEVRKMTLDRSEYT---SLIPN-LRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEC-BSSEEEEETTSCCCE---EEECS-CSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEC-CCeEEEEECCCCcce---eeeCC-CCceEEEEE--EeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 44433 335877888765543 22222 334567777 7777776666666777777666432211 1111 12
Q ss_pred ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEE
Q 011924 277 WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFASAW 355 (475)
Q Consensus 277 ~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~ 355 (475)
..+. .+++.+.+..|..+ ...+.|.+.++........+.........+++
T Consensus 77 ~~p~-----------------------------glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~v 127 (266)
T d1ijqa1 77 QAPD-----------------------------GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127 (266)
T ss_dssp SCCC-----------------------------EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred CCcc-----------------------------eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEE
Confidence 2233 78888755555554 45678999998766555555555677899999
Q ss_pred ecCCCEEEEEeC--CCeEEEEECCCCCceEEEE-ecCCCceEEEEEccCCCEEEEE-cCCCeEEEEECCCCeeEEEEecc
Q 011924 356 HPNGVTFATGNQ--DKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 356 sp~g~~l~t~s~--dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
+|...+|.-... .+.|.-.++. +.....+ .........+++.+.++.|+.+ ...+.|...++............
T Consensus 128 d~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~ 205 (266)
T d1ijqa1 128 DPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 205 (266)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred EcccCeEEEeccCCCcceeEeccC--CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC
Confidence 996555554433 3456666664 3333333 3344567899999988777666 55688999998654333333222
Q ss_pred --CCCeEEEEEcCCCCeEEEEEe
Q 011924 432 --FGEISGISFSPDTESLFIGVW 452 (475)
Q Consensus 432 --~~~i~~l~fspdg~~l~~~~~ 452 (475)
.....+|++. +.+|+.+.+
T Consensus 206 ~~~~~p~~lav~--~~~ly~td~ 226 (266)
T d1ijqa1 206 KRLAHPFSLAVF--EDKVFWTDI 226 (266)
T ss_dssp TTTSSEEEEEEE--TTEEEEEET
T ss_pred CcccccEEEEEE--CCEEEEEEC
Confidence 2346677765 456776643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.43 E-value=0.065 Score=52.23 Aligned_cols=251 Identities=14% Similarity=0.049 Sum_probs=136.5
Q ss_pred EEEcCcEEEEEecCceEEEEeCCCCCceEEEeeecCCC-Ccee-EEEEEeCCCCCeEEEEEe-----CCCeEEEEECCCC
Q 011924 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AITN-AVEIYGSPSGAVHFTASN-----NDCGVRDFDMGKY 267 (475)
Q Consensus 195 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~-~l~~~~s~~g~~~l~s~s-----~dg~v~iwd~~~~ 267 (475)
+++.+..|+.++.+|.|...|..+.+..........+. ..++ .-.+ ..+. +++.++ ..|.|+.+|+.++
T Consensus 111 ~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v---~~~~-vivg~~~~~~~~~G~v~a~D~~TG 186 (571)
T d2ad6a1 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDT-VLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTE-EEEECBCGGGTCCCEEEEEETTTC
T ss_pred ceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeE---eCCe-EEEeeccccccccCcEEEEECCCC
Confidence 45566778888999999999998877654333321111 1111 1112 1333 233332 3688999999999
Q ss_pred eeeeeeecccc------------------------------------------EEeccCCceE-----------------
Q 011924 268 QLSKHFRFPWP------------------------------------------VNVSSSYCII----------------- 288 (475)
Q Consensus 268 ~~~~~~~~~~~------------------------------------------v~~s~~~~~l----------------- 288 (475)
+.+-.+..... ..+.+....+
T Consensus 187 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g 266 (571)
T d2ad6a1 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred cEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccc
Confidence 98876542100 0111111111
Q ss_pred -----EEEEEeecccceEEEEeeee-------------eeEEECCCCc---EEEEEeCCCcEEEEECCCCceEEEeecCC
Q 011924 289 -----LLCRLLNFMTEKVIICLLCL-------------QHSSQSPDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHL 347 (475)
Q Consensus 289 -----~~~~v~d~~~~~~~~~~~~i-------------~~~~~sp~g~---~l~~~~~dg~i~iwd~~~~~~~~~l~~h~ 347 (475)
..+...|..+|+.......+ ....+..+|+ .++.++.+|.++++|..+|+++.......
T Consensus 267 ~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~ 346 (571)
T d2ad6a1 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred ccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCC
Confidence 02445577777776554411 0111222343 45677889999999999998874322100
Q ss_pred -------------------------------------CC--eEEEEEecCCCEEEEEeCCC-------------------
Q 011924 348 -------------------------------------DF--SFASAWHPNGVTFATGNQDK------------------- 369 (475)
Q Consensus 348 -------------------------------------~~--v~~~~~sp~g~~l~t~s~dg------------------- 369 (475)
+. -...+++|+..+++....+.
T Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 426 (571)
T d2ad6a1 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred cccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccc
Confidence 00 01257788777777655442
Q ss_pred ------------------eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEecc
Q 011924 370 ------------------TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 431 (475)
Q Consensus 370 ------------------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~ 431 (475)
.|.-+|+.+ ++.+=...... +..+-..+-.|.++++|+.|+.++.+|.++|+.+-++...
T Consensus 427 ~~~~~~~~~~~~~~~~~G~l~AiD~~T-G~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~ 504 (571)
T d2ad6a1 427 ATLAMYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTT-CCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceeeccccCCcccCCcccEEEeccCC-CceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence 344445543 33222221111 1111011223557778999999999999999998877643
Q ss_pred CC-CeEEEEEcCCCC-eEEEEE
Q 011924 432 FG-EISGISFSPDTE-SLFIGV 451 (475)
Q Consensus 432 ~~-~i~~l~fspdg~-~l~~~~ 451 (475)
.+ .-.-+.|..||+ ||++..
T Consensus 505 ~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 505 SGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp SCCCSCCEEEEETTEEEEEEEE
T ss_pred CCceecceEEEECCEEEEEEEe
Confidence 22 222356666885 555543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.38 E-value=0.059 Score=52.61 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCCe-EEEEEcCCCC-eEEEEE
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTE-SLFIGV 451 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~fspdg~-~l~~~~ 451 (475)
.|.+|.+|+.|+.++.+|.++|+.+-.+....+.. .-+.|..+|+ ||++.+
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 56688889999999999999999998776432211 1245666886 555443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.24 E-value=0.1 Score=50.56 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=153.8
Q ss_pred CeEEEe-cCCeEEEEecCCCCceEEEeccCCCCCCCCCCCCccccccceeEEEEEEcCcEEEEEecCceEEEEeCCCCCc
Q 011924 143 HDVYLM-SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGV 221 (475)
Q Consensus 143 ~~v~~~-~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~lvsg~~dg~i~vw~~~~~~~ 221 (475)
..||+. .++.|+-.+..+++.. +.+......... ........-..++..+..++.+..+|.|...|..+.+.
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~l--W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~ 139 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKEL--WRYDPEVAKVKA-----RTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKA 139 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEE--EEECCCCCGGGG-----GGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEeCCCCCEE--EEECCCCCcccc-----ccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcE
Confidence 345553 4577777888777543 333211100000 00000011123334566788888899999888877776
Q ss_pred eEEEeeecCCCCc-ee-EEEEEeCCCCCeEEEEEe------CCCeEEEEECCCCeeeeeeecccc---------------
Q 011924 222 SFCSRTTYDDNAI-TN-AVEIYGSPSGAVHFTASN------NDCGVRDFDMGKYQLSKHFRFPWP--------------- 278 (475)
Q Consensus 222 ~~~~~~~~~~~~~-v~-~l~~~~s~~g~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~--------------- 278 (475)
............. +. .-.+ -++. ++.+. ..|.|+.+|.++++.+-.+....+
T Consensus 140 ~w~~~~~~~~~~~~~~~~p~v---~~~~--vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 214 (560)
T d1kv9a2 140 IWSQQTTDPAKPYSITGAPRV---VKGK--VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (560)
T ss_dssp EEEEECSCTTSSCBCCSCCEE---ETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred EeccCccCcccceeeeeeeee---ecCc--ccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccc
Confidence 5433332211110 10 1111 1332 33332 236799999999998877652100
Q ss_pred --------------------EEeccCCceEE-------------------------EEEEeecccceEEEEeeeee----
Q 011924 279 --------------------VNVSSSYCIIL-------------------------LCRLLNFMTEKVIICLLCLQ---- 309 (475)
Q Consensus 279 --------------------v~~s~~~~~l~-------------------------~~~v~d~~~~~~~~~~~~i~---- 309 (475)
+.+.+....+. .+.-.|..+++.......+.
T Consensus 215 ~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~w 294 (560)
T d1kv9a2 215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW 294 (560)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred ccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccc
Confidence 01111111110 23444666777665443111
Q ss_pred ---------eEEECCCC---cEEEEEeCCCcEEEEECCCCceEEEeecCC-CC---------------------------
Q 011924 310 ---------HSSQSPDG---KLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DF--------------------------- 349 (475)
Q Consensus 310 ---------~~~~sp~g---~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~-~~--------------------------- 349 (475)
-+.+..+| ..++.++.+|.++++|..+|+++.....-. ..
T Consensus 295 d~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 374 (560)
T d1kv9a2 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (560)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred cccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeee
Confidence 11122233 356667889999999999998875432100 00
Q ss_pred --------eEEEEEecCCCEEEEEeCC------------------------------------CeEEEEECCCCCceEEE
Q 011924 350 --------SFASAWHPNGVTFATGNQD------------------------------------KTCRIWDLRNLSESVAV 385 (475)
Q Consensus 350 --------v~~~~~sp~g~~l~t~s~d------------------------------------g~v~iwd~~~~~~~~~~ 385 (475)
-...+++|+..+++....+ |.+.-||+.+ ++.+=.
T Consensus 375 p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~t-Gk~~W~ 453 (560)
T d1kv9a2 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWK 453 (560)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEE
T ss_pred eccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCC-CeEeee
Confidence 0135677777666654432 3566677755 443333
Q ss_pred EecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC-eEEEEEcCCCC-eEEEEEe
Q 011924 386 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTE-SLFIGVW 452 (475)
Q Consensus 386 ~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~fspdg~-~l~~~~~ 452 (475)
..... +..+-.++-.|.++++|+.||.++.+|..+|+.+-++....+. -.-+.+..+|+ ||++.+.
T Consensus 454 ~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG 521 (560)
T d1kv9a2 454 VPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (560)
T ss_dssp EEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence 32211 1111112334567788999999999999999999877643321 12255667885 6665543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.00 E-value=0.094 Score=45.67 Aligned_cols=212 Identities=11% Similarity=0.069 Sum_probs=129.1
Q ss_pred cCceEEEEeCCCCCceEEEeeecCCCCceeEEEEEeCCCCCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEec--cC
Q 011924 207 FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVS--SS 284 (475)
Q Consensus 207 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~~~s~~g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s--~~ 284 (475)
...++.+.|+..+........ .. .+.-+ +|..+. ++.-+ ..++.+||+++.+.++.+..+.+|.|= -+
T Consensus 43 ~~~~VvIidl~n~~~~~Rrpi-~A-----dsAIM--hP~~~I-iALra-g~~LQiFnletK~klks~~~~e~VvfWkWis 112 (327)
T d1utca2 43 EQAQVVIIDMNDPSNPIRRPI-SA-----DSAIM--NPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 112 (327)
T ss_dssp TEEEEEEEETTSTTSCEEEEC-CC-----SEEEE--CSSSSE-EEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS
T ss_pred CCceEEEEECCCCCcceeccc-ch-----hhhhc--CCCCcE-EEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC
Confidence 446888889976554321111 11 12224 888875 44433 568999999999999998877777631 12
Q ss_pred CceEE-----EEEEeecccce-EEEEee--------eeeeEEECCCCcEEEEEe---C----CCcEEEEECCCCceEEEe
Q 011924 285 YCIIL-----LCRLLNFMTEK-VIICLL--------CLQHSSQSPDGKLLIIVG---D----NPDGLLVDSMTGKTIASL 343 (475)
Q Consensus 285 ~~~l~-----~~~v~d~~~~~-~~~~~~--------~i~~~~~sp~g~~l~~~~---~----dg~i~iwd~~~~~~~~~l 343 (475)
...|+ .+..|++.... +.+... -|-.-..+++.++++..| . .|.+.+|..+ .+.-+.+
T Consensus 113 ~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~i 191 (327)
T d1utca2 113 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPI 191 (327)
T ss_dssp SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEE
T ss_pred CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCccc
Confidence 23333 56788874422 222222 344777889999887654 2 3667889875 4456678
Q ss_pred ecCCCCeEEEEEecC---CCEEEEEe---CCCeEEEEECCCCC---ce--EE--EEe-c---CCCceEEEEEccCCCEEE
Q 011924 344 CGHLDFSFASAWHPN---GVTFATGN---QDKTCRIWDLRNLS---ES--VA--VLK-G---NLGAIRSIRYTSDGRYMA 406 (475)
Q Consensus 344 ~~h~~~v~~~~~sp~---g~~l~t~s---~dg~v~iwd~~~~~---~~--~~--~~~-~---~~~~v~~l~~spdg~~la 406 (475)
+||...-..+...-+ ..+|+.+. ..+.+.|-++.... .+ .+ .+. . ..+-.-++..|+.-..+.
T Consensus 192 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiy 271 (327)
T d1utca2 192 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 271 (327)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEE
T ss_pred cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEE
Confidence 888654333332211 12343332 23678898886521 11 11 111 1 123344788888777888
Q ss_pred EEcCCCeEEEEECCCCeeEEEEe
Q 011924 407 TAEPADFVHVYDVKSGYEKEQEI 429 (475)
Q Consensus 407 ~~~~dg~i~iwd~~~~~~~~~~~ 429 (475)
.-+.-|.|++||+.++.++..-.
T Consensus 272 viTK~G~i~lyDleTgt~i~~nR 294 (327)
T d1utca2 272 LITKYGYIHLYDLETGTCIYMNR 294 (327)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE
T ss_pred EEecCcEEEEEEcccccEEEEee
Confidence 99999999999999998877654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.86 E-value=0.11 Score=46.79 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=80.6
Q ss_pred CCCCcE-EEEEe---CCCcEEEEECCCCc-eE---EEeec-CCCCeEEEEEecCCCEEEEEeC---------------CC
Q 011924 314 SPDGKL-LIIVG---DNPDGLLVDSMTGK-TI---ASLCG-HLDFSFASAWHPNGVTFATGNQ---------------DK 369 (475)
Q Consensus 314 sp~g~~-l~~~~---~dg~i~iwd~~~~~-~~---~~l~~-h~~~v~~~~~sp~g~~l~t~s~---------------dg 369 (475)
.++|+. |++.. ...+|.++++.... .+ ..+.. ......++++..++.+++|-.. -+
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 456653 44442 34578888875332 22 12221 2245789999999988887311 12
Q ss_pred eEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEc-CCCeEEEEECCCCeeE--EEEeccCCCeEEEEEcCCCCe
Q 011924 370 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEK--EQEIDFFGEISGISFSPDTES 446 (475)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~-~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~fspdg~~ 446 (475)
+..+|.... +.. ..+.........++++||+++|+++. ..+.|++|++.....+ .......+.+-.+.+.+.+..
T Consensus 187 ~g~v~~~~~-~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 187 WSFVTYYSP-NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 264 (340)
T ss_dssp CEEEEEECS-SCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred ceeEEEEcC-Cce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence 344444432 332 33333334678999999998776664 5678999998654322 222334566778888875555
Q ss_pred EEEEEec
Q 011924 447 LFIGVWD 453 (475)
Q Consensus 447 l~~~~~D 453 (475)
+.+++..
T Consensus 265 lwva~~p 271 (340)
T d1v04a_ 265 LWVGCHP 271 (340)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 6666543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.43 E-value=0.3 Score=43.86 Aligned_cols=209 Identities=11% Similarity=0.128 Sum_probs=117.0
Q ss_pred EEEEeCCC--CCeEEEEEeCCCeEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECC
Q 011924 238 VEIYGSPS--GAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSP 315 (475)
Q Consensus 238 l~~~~s~~--g~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp 315 (475)
-++..+|. .+.+++.....+-|.+||+. |+.+..+. .+.++ .+ ...+.+.+..
T Consensus 29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~N---------NV--------------Dvr~~~~l~~ 83 (353)
T d1h6la_ 29 PAIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLN---------NV--------------DIRYDFPLNG 83 (353)
T ss_dssp EEEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEE---------EE--------------EEEEEEEETT
T ss_pred ceEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcC---------cc--------------ccccccccCC
Confidence 34443653 23346666677789999995 66665553 23344 00 0000222322
Q ss_pred CCcEEEEEeCC----CcEEEEECC-CCceEEEeecC-------CCCeEEEEE--ec-CCC-EEEEEeCCCeEEEEECCCC
Q 011924 316 DGKLLIIVGDN----PDGLLVDSM-TGKTIASLCGH-------LDFSFASAW--HP-NGV-TFATGNQDKTCRIWDLRNL 379 (475)
Q Consensus 316 ~g~~l~~~~~d----g~i~iwd~~-~~~~~~~l~~h-------~~~v~~~~~--sp-~g~-~l~t~s~dg~v~iwd~~~~ 379 (475)
...-+++++.. ..|.+|.+. ....+..+... ...++.+|+ +| +|. ++++...+|.+..|.+...
T Consensus 84 ~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~ 163 (353)
T d1h6la_ 84 KKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNAD 163 (353)
T ss_dssp EEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEEC
T ss_pred cceEEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcC
Confidence 33335555422 257777764 33334444321 123566666 66 454 4556667888888876321
Q ss_pred --C----ceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCC--C---eeEEEEe--ccCCCeEEEEEc--CCC
Q 011924 380 --S----ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS--G---YEKEQEI--DFFGEISGISFS--PDT 444 (475)
Q Consensus 380 --~----~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~--~---~~~~~~~--~~~~~i~~l~fs--pdg 444 (475)
+ ..++.+.. ...+-.+.+.+....|..+..+..|+.++..- + ..+.... ...+.+.+|+.- +++
T Consensus 164 ~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~ 242 (353)
T d1h6la_ 164 KNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADG 242 (353)
T ss_dssp TTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGG
T ss_pred CCCceeeEeeeccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCC
Confidence 2 24455544 34688999999988999998887777777541 1 1221111 134677888754 344
Q ss_pred C-eEEEEEecCCcceEEEEEeecceeeeccc
Q 011924 445 E-SLFIGVWDRTYGSLLEYGRCRNYSYLDSL 474 (475)
Q Consensus 445 ~-~l~~~~~D~~~~~ll~~~~~~~~~~l~~~ 474 (475)
. ||++++... ..+.-|.|...+.|+.++
T Consensus 243 ~GylivSsQG~--n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 243 KGYLLASSQGN--SSYAIYERQGQNKYVADF 271 (353)
T ss_dssp CEEEEEEEGGG--TEEEEEESSTTCCEEEEE
T ss_pred CeEEEEEcCCC--CeEEEEecCCCccccceE
Confidence 4 777666532 567777777767787653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.15 E-value=0.24 Score=48.03 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=51.8
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCC-E
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGR-Y 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~-~ 404 (475)
|.|.-+|+.+|+.+.+... ..+..+-.....+.++++|+.|+.++-+|.++ ++.+-.+..... .-.-+.|..||+ |
T Consensus 444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~t-Ge~lW~~~l~~~~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKD-GKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCC-CcEEEEEECCCCceecceEEEECCEEE
Confidence 4688889999988776652 22222212233566788899999999999988 776655553321 222356667886 6
Q ss_pred EEEEc
Q 011924 405 MATAE 409 (475)
Q Consensus 405 la~~~ 409 (475)
+++..
T Consensus 522 i~v~~ 526 (571)
T d2ad6a1 522 IGSMY 526 (571)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.14 E-value=0.51 Score=43.66 Aligned_cols=191 Identities=11% Similarity=0.003 Sum_probs=100.6
Q ss_pred CCCCCeEEEEEeCCC----eEEEEECCCCeeeeeeeccccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCc
Q 011924 243 SPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGK 318 (475)
Q Consensus 243 s~~g~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~ 318 (475)
||++++++++-+..| .|+++|+.+++.+...-...... .++|.++++
T Consensus 133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~-----------------------------~~~W~~D~~ 183 (430)
T d1qfma1 133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-----------------------------CMAWTHDGK 183 (430)
T ss_dssp CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-----------------------------CEEECTTSS
T ss_pred cCCCCEEEEEeccccCchheeEEeccCcceeccccccccccc-----------------------------ceEEcCCCC
Confidence 999998666655444 69999999998764221111112 678999998
Q ss_pred EEEEEeCC----------------CcEEEEECCCCce--EEEeecC--CCCeEEEEEecCCCEEEEEeC---CCeEEEE-
Q 011924 319 LLIIVGDN----------------PDGLLVDSMTGKT--IASLCGH--LDFSFASAWHPNGVTFATGNQ---DKTCRIW- 374 (475)
Q Consensus 319 ~l~~~~~d----------------g~i~iwd~~~~~~--~~~l~~h--~~~v~~~~~sp~g~~l~t~s~---dg~v~iw- 374 (475)
.|+....+ ..+..+.+.++.. +..+... ...+..+..++++++++.... +....+|
T Consensus 184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~ 263 (430)
T d1qfma1 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (430)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence 87754322 2577777766532 3334432 234666778899998765432 3334444
Q ss_pred -ECCCCCc-------eEEEEecCCCceEEEEEccCCCEEEEEc---CCCeEEEEECCCCee--EEEEec-cCCCeEEEEE
Q 011924 375 -DLRNLSE-------SVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYE--KEQEID-FFGEISGISF 440 (475)
Q Consensus 375 -d~~~~~~-------~~~~~~~~~~~v~~l~~spdg~~la~~~---~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~l~f 440 (475)
|+..... ....+....... ...-+.++.+++... .++.|...++.+... ...+.. +...+..-.+
T Consensus 264 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~ 342 (430)
T d1qfma1 264 CDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA 342 (430)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE
T ss_pred eeCCCcccccccccceeEeecccccce-EEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE
Confidence 5432111 122222222222 222222333333332 235666666654321 122333 3344544444
Q ss_pred cCCCCeEEEEEecCCcceEEEEE
Q 011924 441 SPDTESLFIGVWDRTYGSLLEYG 463 (475)
Q Consensus 441 spdg~~l~~~~~D~~~~~ll~~~ 463 (475)
+..+.+|++...++....+.-+.
T Consensus 343 ~~~~~~lvl~~~~~~~~~l~v~~ 365 (430)
T d1qfma1 343 CVRSNFLVLCYLHDVKNTLQLHD 365 (430)
T ss_dssp EETTTEEEEEEEETTEEEEEEEE
T ss_pred EEECCEEEEEEEcCCEeEEEEEE
Confidence 44555777666555555554443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.90 E-value=0.25 Score=47.77 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=52.9
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCC-E
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGR-Y 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~-~ 404 (475)
|.+.-||+.+|+.+.+... ..+..+-...-.+.++++|+.||.++-+|.++ ++.+=.+....+ .-.-+.|..+|+ |
T Consensus 438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence 5678899999998877652 22222223344567888899999999999988 776666654332 111255667885 6
Q ss_pred EEEEc
Q 011924 405 MATAE 409 (475)
Q Consensus 405 la~~~ 409 (475)
|++.+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.75 E-value=0.64 Score=41.58 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=91.3
Q ss_pred ceEEEEeCCCCCceEEEeeec-----CCCCceeEEEEEeCCC-CCeEEEEEeCCCeEEEEECC---C----Ceeeeeeec
Q 011924 209 GELICKHLDRPGVSFCSRTTY-----DDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMG---K----YQLSKHFRF 275 (475)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~s~~-g~~~l~s~s~dg~v~iwd~~---~----~~~~~~~~~ 275 (475)
.+|.+|.+............. .....+..++++.++. |...+++...+|.+..|.+. . .+.++.+..
T Consensus 99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~ 178 (353)
T d1h6la_ 99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM 178 (353)
T ss_dssp CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence 367788876443322111100 1112367788877775 55556667788999888763 2 245566666
Q ss_pred cccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeCCCcEEEEECC--C---CceEEEeec--CCC
Q 011924 276 PWPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGDNPDGLLVDSM--T---GKTIASLCG--HLD 348 (475)
Q Consensus 276 ~~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~dg~i~iwd~~--~---~~~~~~l~~--h~~ 348 (475)
+..+. .+.+.+....|.++-.+.-+..++.. . +..+....+ ...
T Consensus 179 ~~q~E-----------------------------GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~ 229 (353)
T d1h6la_ 179 NSQTE-----------------------------GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTP 229 (353)
T ss_dssp SSCEE-----------------------------EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCS
T ss_pred CCccc-----------------------------eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccC
Confidence 66777 88899988888888887767666654 1 222222222 345
Q ss_pred CeEEEEEec--CCC-EEEEEe-CCCeEEEEECCCCCceEEEEe
Q 011924 349 FSFASAWHP--NGV-TFATGN-QDKTCRIWDLRNLSESVAVLK 387 (475)
Q Consensus 349 ~v~~~~~sp--~g~-~l~t~s-~dg~v~iwd~~~~~~~~~~~~ 387 (475)
.+-.++.-. ++. +|++++ .+.+..|||...+...+..+.
T Consensus 230 D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 230 DIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 677777543 322 555554 478999999976556665554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.17 E-value=0.76 Score=44.30 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=52.8
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCCce-EEEEEccCCC-E
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI-RSIRYTSDGR-Y 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~~v-~~l~~spdg~-~ 404 (475)
|.+.-||+.+|+.+.+.+... +...-..+-.|.++++|+.|+.++.+|.++ ++.+-.+....+.. .-+.|..+|+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence 457788989998887776322 222222344677888999999999999988 77776665433211 1245666886 5
Q ss_pred EEEEc
Q 011924 405 MATAE 409 (475)
Q Consensus 405 la~~~ 409 (475)
+++.+
T Consensus 535 v~v~~ 539 (573)
T d1kb0a2 535 VSVAV 539 (573)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.05 E-value=0.11 Score=47.13 Aligned_cols=112 Identities=20% Similarity=0.136 Sum_probs=74.0
Q ss_pred eEEECCCCcEEEEEeCCC-----------cEEEEECCCCceEE--Ee-ecCCCCeEEEEEecCCCEEEEEeCC-CeEEEE
Q 011924 310 HSSQSPDGKLLIIVGDNP-----------DGLLVDSMTGKTIA--SL-CGHLDFSFASAWHPNGVTFATGNQD-KTCRIW 374 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg-----------~i~iwd~~~~~~~~--~l-~~h~~~v~~~~~sp~g~~l~t~s~d-g~v~iw 374 (475)
......+|++++.|+.+. .+.+||..+++-.. .+ ..+.....+.++.++|++++.|+.+ .++.+|
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y 103 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 103 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence 344566899999987421 36799998875321 22 2344445567889999999998765 589999
Q ss_pred ECCCCCceEEEEecC--CCceEEEEEccCCCEEEEEcCC------CeEEEEECCCCe
Q 011924 375 DLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPA------DFVHVYDVKSGY 423 (475)
Q Consensus 375 d~~~~~~~~~~~~~~--~~~v~~l~~spdg~~la~~~~d------g~i~iwd~~~~~ 423 (475)
|..+ ..- ..+... ...-..++..+||++++.++.. ..+.+||..+..
T Consensus 104 d~~~-~~w-~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 104 DSSS-DSW-IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EGGG-TEE-EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cCcc-Ccc-cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 9875 332 222211 1122467778899999998753 368999988764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.89 E-value=1.3 Score=42.75 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=52.3
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCC-E
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGR-Y 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~-~ 404 (475)
|.|.-||+.+|+.+.... +..+..+-..+..|.++..|+.||.++.+|.++ ++.+-.+....+ .-.-+.|..+|+ |
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T-Ge~LW~~~~~~~~~a~P~tY~~dGkQY 530 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCC-CcEeeEEECCCCcccCCeEEEECCEEE
Confidence 568888999998876654 222333223344677888899999999999988 777766654322 112245666885 5
Q ss_pred EEEE
Q 011924 405 MATA 408 (475)
Q Consensus 405 la~~ 408 (475)
+++.
T Consensus 531 vav~ 534 (596)
T d1w6sa_ 531 VAIY 534 (596)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.87 E-value=1.8 Score=41.56 Aligned_cols=81 Identities=22% Similarity=0.177 Sum_probs=48.6
Q ss_pred CeEEEEECCCCCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEeccCCC-eEEEEEcCCCC-e
Q 011924 369 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTE-S 446 (475)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~fspdg~-~ 446 (475)
|.|.-+|+.+ ++.+=....+. ++.+-..+..|.++++|+.||.++.+|.++|+.+-.+....+. -.-+.|..+|+ |
T Consensus 466 G~l~AiD~~T-G~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCC-CcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4455566654 44333333221 2221123345668888999999999999999999887643321 12266778885 5
Q ss_pred EEEEE
Q 011924 447 LFIGV 451 (475)
Q Consensus 447 l~~~~ 451 (475)
|++.+
T Consensus 544 v~i~a 548 (582)
T d1flga_ 544 LGVTV 548 (582)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.67 E-value=1.4 Score=40.94 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=35.4
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEE--Eee------cCCCCeEEEEEecC
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA--SLC------GHLDFSFASAWHPN 358 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~l~------~h~~~v~~~~~sp~ 358 (475)
+|+|.|+|++|++--..|.|++++..+++... .+. .-+.....++++|+
T Consensus 31 ~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 88999999988876557999999887765432 221 11346788999994
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.62 E-value=1.4 Score=39.13 Aligned_cols=171 Identities=9% Similarity=0.066 Sum_probs=95.1
Q ss_pred CceEEEEeCCCCCceEEEeeecCCC-----CceeEEEEEeCCCCCeEEEEEe---CCCeEEEEECCCCe-eee---eeec
Q 011924 208 QGELICKHLDRPGVSFCSRTTYDDN-----AITNAVEIYGSPSGAVHFTASN---NDCGVRDFDMGKYQ-LSK---HFRF 275 (475)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~s~~g~~~l~s~s---~dg~v~iwd~~~~~-~~~---~~~~ 275 (475)
.|.|.++|+.............+.. -.-..+.+...++|...|++.+ ...+|.+|++.... ... ++.+
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4899999987655432221111110 1234556655777876666654 34678888874322 122 2222
Q ss_pred c--ccEEeccCCceEEEEEEeecccceEEEEeeeeeeEEECCCCcEEEEEeC---------------CCcEEEEECCCCc
Q 011924 276 P--WPVNVSSSYCIILLCRLLNFMTEKVIICLLCLQHSSQSPDGKLLIIVGD---------------NPDGLLVDSMTGK 338 (475)
Q Consensus 276 ~--~~v~~s~~~~~l~~~~v~d~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------------dg~i~iwd~~~~~ 338 (475)
+ ...+ .+++..+|.++++-.. -+...+|....++
T Consensus 147 ~~~~~pN-----------------------------Dv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 147 KLLPSVN-----------------------------DIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp TTCSSEE-----------------------------EEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred ccccCcc-----------------------------ceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 1 2233 7777778877776310 1233444444444
Q ss_pred eEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCCceEE-EEecCCCceEEEEEcc-CCCEEEEE
Q 011924 339 TIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVA-VLKGNLGAIRSIRYTS-DGRYMATA 408 (475)
Q Consensus 339 ~~~~l~~h~~~v~~~~~sp~g~~l~t~s-~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~sp-dg~~la~~ 408 (475)
. ..+...-.....++++|++++|+.+. ..+.|++|++...+.... ....-.+..-.+.+.+ +|.+.+.+
T Consensus 198 ~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 198 V-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp E-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred e-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 3 23332345688999999998777664 577899999865332211 1112334566788876 55555544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=1.6 Score=39.42 Aligned_cols=133 Identities=9% Similarity=-0.049 Sum_probs=74.4
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEec-
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG- 388 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~- 388 (475)
.++|+.+ .|++. .++.+..++..+-........-..++.++.++|. .++....++.+.++++.+. .......+
T Consensus 91 ~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~-~~~~~~~~v 164 (381)
T d1xipa_ 91 FVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STKQLAQNV 164 (381)
T ss_dssp EEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEEEEEESE
T ss_pred EEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccC-ccccccCCc
Confidence 7888754 45554 4456888887654444343334567888888774 5677778899999999773 32222111
Q ss_pred ----CCCceEEEEEccCCCEEEEEcCCCeEEEE-ECCCCeeEEEEeccCCCeEEEEEcCCCCeEEE
Q 011924 389 ----NLGAIRSIRYTSDGRYMATAEPADFVHVY-DVKSGYEKEQEIDFFGEISGISFSPDTESLFI 449 (475)
Q Consensus 389 ----~~~~v~~l~~spdg~~la~~~~dg~i~iw-d~~~~~~~~~~~~~~~~i~~l~fspdg~~l~~ 449 (475)
-.+.+.+++|++.|+.++++..+. ..+- ++.....+.........|.+|.|-.+..++++
T Consensus 165 ~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 165 TSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence 124567777877777776663321 2111 11111000000112346888888866554443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.22 E-value=0.53 Score=45.55 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=54.7
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCCceEEEEecCCC-ceEEEEEccCCC-E
Q 011924 327 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGR-Y 404 (475)
Q Consensus 327 g~i~iwd~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~spdg~-~ 404 (475)
|.+.-+|+.+|+.+.+...+. ++..-..+..+.++++|+.||.++.+|.++ ++.+-.+....+ .-.-+.|..+|+ |
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence 568888999999887776432 333223445677888899999999999988 777766654332 112366778895 5
Q ss_pred EEEE
Q 011924 405 MATA 408 (475)
Q Consensus 405 la~~ 408 (475)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.64 E-value=3.3 Score=39.77 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCeEEEEECCCCeeEEEEeccCC-CeEEEEEcCCCC-eEEEEE
Q 011924 401 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE-SLFIGV 451 (475)
Q Consensus 401 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~fspdg~-~l~~~~ 451 (475)
.|.++..|+.||.++.+|.++|+.+-++....+ .-.-+.|..+|+ ||++.+
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~ 535 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEe
Confidence 466777899999999999999999987764322 112244556885 565543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=2.3 Score=38.28 Aligned_cols=133 Identities=9% Similarity=0.051 Sum_probs=86.6
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEECC-----------CCceEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 011924 310 HSSQSPDGKLLIIVGDNPDGLLVDSM-----------TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 378 (475)
Q Consensus 310 ~~~~sp~g~~l~~~~~dg~i~iwd~~-----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~t~s~dg~v~iwd~~~ 378 (475)
-+++++...++++|+.++ +.|..+. ......... -..|..++|+-+ .|+.. .++.+..++...
T Consensus 41 LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~ 114 (381)
T d1xipa_ 41 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLDLEE 114 (381)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEESSS
T ss_pred eEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEEeec
Confidence 678999888888888775 6666532 111111222 235888999644 45555 445688888866
Q ss_pred CCceEEEEecCCCceEEEEEccCCCEEEEEcCCCeEEEEECCCCeeEEEEe-----ccCCCeEEEEEcCCCCeEEEEE
Q 011924 379 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-----DFFGEISGISFSPDTESLFIGV 451 (475)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~fspdg~~l~~~~ 451 (475)
... .........++.++.+.|. .++....++.+.++++..+....... .-.+.+.+++|++.|..++++.
T Consensus 115 l~~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 115 LSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp TTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred ccc-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 333 3333334457888888875 45566668889999998875433221 2346789999999999998874
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=2.9 Score=35.21 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCCc-----EEEEECCCCceEEEeecCCC--CeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCCceE
Q 011924 316 DGKLLIIVGDNPD-----GLLVDSMTGKTIASLCGHLD--FSFASAWHPNGVTFATGNQD-----KTCRIWDLRNLSESV 383 (475)
Q Consensus 316 ~g~~l~~~~~dg~-----i~iwd~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~t~s~d-----g~v~iwd~~~~~~~~ 383 (475)
++++++.++.++. ...++..+.... ....... .-.++... ++.+++.|+.+ ..+..||... .+ .
T Consensus 101 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~-~~-~ 176 (288)
T d1zgka1 101 DGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER-NE-W 176 (288)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT-TE-E
T ss_pred ceeeEEecceecccccceeeeeccccCccc-cccccccccccceeeee-eecceEecCcccccccceEEEeeccc-cc-c
Confidence 5666666544333 445666554422 1111111 11122222 44555555443 3577888754 22 2
Q ss_pred EEEecCCC--ceEEEEEccCCCEEEEEcCC-----CeEEEEECCCCeeEEEEeccCCCe-EEEEEcCCCCeEEEEEecCC
Q 011924 384 AVLKGNLG--AIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTESLFIGVWDRT 455 (475)
Q Consensus 384 ~~~~~~~~--~v~~l~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~fspdg~~l~~~~~D~~ 455 (475)
........ ...++.. ..+++++.++.+ ..+.++|..+.............. .+++. .+++.++.|+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~ 254 (288)
T d1zgka1 177 RMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGH 254 (288)
T ss_dssp EECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred ccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCC
Confidence 22221111 1112222 245666666543 357888887765432211111112 12222 36777778776654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=6.6 Score=32.80 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=50.8
Q ss_pred CCcEEEEEeC-----CCcEEEEECCCCceEEEeecCC--CCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCCceE
Q 011924 316 DGKLLIIVGD-----NPDGLLVDSMTGKTIASLCGHL--DFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESV 383 (475)
Q Consensus 316 ~g~~l~~~~~-----dg~i~iwd~~~~~~~~~l~~h~--~~v~~~~~sp~g~~l~t~s~dg-----~v~iwd~~~~~~~~ 383 (475)
++.+++.|+. ...+..||..+.+.. ...... ....+++. ..+++++.|+.++ .+.++|... .+ .
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~-~~-~ 223 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWR-MITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVET-ET-W 223 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT-TE-E
T ss_pred eecceEecCcccccccceEEEeeccccccc-cccccccccccccccc-eeeeEEEecCccccccccceeeeeecc-ee-e
Confidence 4455555543 245778887765432 222111 11122222 2456666665432 466777754 22 2
Q ss_pred EEEecC-CCce-EEEEEccCCCEEEEEcCCC-----eEEEEECCCCe
Q 011924 384 AVLKGN-LGAI-RSIRYTSDGRYMATAEPAD-----FVHVYDVKSGY 423 (475)
Q Consensus 384 ~~~~~~-~~~v-~~l~~spdg~~la~~~~dg-----~i~iwd~~~~~ 423 (475)
..+... .... .+++ ..++++++.|+.++ .|.+||+.+..
T Consensus 224 ~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 224 TFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ecccCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 222211 1111 1222 23678888876543 48899998764
|