Citrus Sinensis ID: 011937

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVPV
ccHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccEEEcccccHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccEEcccccccccHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccEEEcccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccc
ccEEEcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccEEEEEcccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccccEEEccHHHHcEEEEccccHHHHHHHHHcccccccccccccEEEccccccEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccEEEEcccHHHHcccccHHccccccccEEEEccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHccccccc
MAIWLTKSRAMAQCLRQRVGLLRilsgqscsspstifplqqynspslpsktlfspgrsestvaanqldslsssdsdddhqvldfpggkvgytsemrfipessekrvpcfrvlddngelikgsdfqqVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIgsaaalsaddfilpqyrepgvllWRGYTLQQFANQVFAnkaddgkgrqmpihygskklnyitisspiatqlpQAVGVAYSLKMEKKDACAVaytgdggtsegdFHAALNFAAVMEAPVVFIcrnngwaistNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYrvghhstsddstkyrtlDEIEYWKTERSPINRFRNWVerqgwwseqeETELRSSIKKQLLQAIQVAEKtekpaitelfsdvydvppsnlaEQEKQLKEIIQtypqdyptdvpv
MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSESTVAANQLDSlsssdsdddhqvLDFPGGKVGYTSEMrfipessekrvpCFRVLDDNgelikgsdfqqVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIStniseqfrsdgIVVKGRAYGIRsirvdgndALAVYTAVQAARemaisekrPVLVEALTyrvghhstsddstkyrtLDEIEywkterspinrfrnWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIqtypqdyptdvpv
MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSESTVAANQldslsssdsdddHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVPV
**IWLTKSRAMAQCLRQRVGLLRILSGQ************************************************************VGYT***RFI******RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST***STKYRTLDEIEYWKTERSPINRFRNWVERQGWWSE************QLLQAIQVA*****PAITELFSDVYD******************************
****************************************************************************************VGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYP*DV**
MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSESTVAANQL**********DHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV**********KYRTLDEIEYWKTERSPINRFRNWVERQGWW***********IKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVPV
MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLF*****************************DFPG*KVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVP*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q54M22441 2-oxoisovalerate dehydrog yes no 0.772 0.829 0.525 1e-120
A5A6H9445 2-oxoisovalerate dehydrog yes no 0.835 0.889 0.483 1e-115
P12694445 2-oxoisovalerate dehydrog yes no 0.835 0.889 0.483 1e-115
Q8HXY4445 2-oxoisovalerate dehydrog N/A no 0.869 0.925 0.470 1e-114
P11960441 2-oxoisovalerate dehydrog yes no 0.858 0.922 0.472 1e-114
O45924431 2-oxoisovalerate dehydrog yes no 0.803 0.883 0.498 1e-114
P50136442 2-oxoisovalerate dehydrog yes no 0.818 0.877 0.484 1e-114
P11178455 2-oxoisovalerate dehydrog yes no 0.818 0.852 0.476 1e-112
P60090370 Pyruvate dehydrogenase E1 yes no 0.734 0.940 0.381 5e-65
Q6GAC1370 Pyruvate dehydrogenase E1 yes no 0.734 0.940 0.381 5e-65
>sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 Back     alignment and function desciption
 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 193/367 (52%), Positives = 265/367 (72%), Gaps = 1/367 (0%)

Query: 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTI 165
           +PC+ ++D  G + K       SKE  +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+ 
Sbjct: 64  IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSF 123

Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
           GEEAI+IGSAAAL   D I  QYRE GV +WRG+T+    NQ   N+ D GKGRQMP+H+
Sbjct: 124 GEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHF 183

Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV 285
           GS+K+N  TISSP+ TQLPQAVG +Y+ K+  +  C + Y G+G  SEGDFHAA+NFAA 
Sbjct: 184 GSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAA 243

Query: 286 MEAPVVFICRNNGWAISTNISEQFRSDGIVVKG-RAYGIRSIRVDGNDALAVYTAVQAAR 344
           +  P +F CRNN WAIST   EQ++ DGI  +G   YG+++IRVDGND  AVY   + AR
Sbjct: 244 LSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLAR 303

Query: 345 EMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWW 404
           ++A+ E+ PVL+EA+TYRVGHHSTSDDS++YRT++EI  WK  ++PI+R RN++  +GWW
Sbjct: 304 KIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWW 363

Query: 405 SEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTY 464
           S+ +E E  ++ +  + +++  AEK  KP+I E+F+DVYD P  NL EQ+K+L E ++ Y
Sbjct: 364 SDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLY 423

Query: 465 PQDYPTD 471
           P +YP +
Sbjct: 424 PDEYPLN 430
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4
>sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 Back     alignment and function description
>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 Back     alignment and function description
>sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 Back     alignment and function description
>sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 Back     alignment and function description
>sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 Back     alignment and function description
>sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 Back     alignment and function description
>sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 Back     alignment and function description
>sp|P60090|ODPA_STAAW Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q6GAC1|ODPA_STAAS Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
297845120472 hypothetical protein ARALYDRAFT_313033 [ 0.983 0.987 0.693 0.0
15218984472 2-oxoisovalerate dehydrogenase E1 compon 0.985 0.989 0.682 0.0
312281515471 unnamed protein product [Thellungiella h 0.978 0.985 0.685 0.0
225457857471 PREDICTED: 2-oxoisovalerate dehydrogenas 0.978 0.985 0.675 0.0
224082376395 predicted protein [Populus trichocarpa] 0.829 0.994 0.801 0.0
356509346478 PREDICTED: 2-oxoisovalerate dehydrogenas 0.936 0.928 0.704 0.0
356515957487 PREDICTED: 2-oxoisovalerate dehydrogenas 0.936 0.911 0.694 0.0
3822223472 branched-chain alpha keto-acid dehydroge 0.983 0.987 0.669 0.0
297811017472 hypothetical protein ARALYDRAFT_350155 [ 0.860 0.864 0.723 0.0
255558474380 2-oxoisovalerate dehydrogenase, putative 0.799 0.997 0.781 0.0
>gi|297845120|ref|XP_002890441.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] gi|297336283|gb|EFH66700.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/470 (69%), Positives = 379/470 (80%), Gaps = 4/470 (0%)

Query: 1   MAIWLTKSRAMAQCLRQRVGLLRILSGQSCS-SPSTIFPLQQYNSPSLPSKTLFSPGRSE 59
           MAIW  +S+ +   LR  + L  IL+   C  SP  IF        S    +  +  R E
Sbjct: 1   MAIWFARSKNLVSSLRHNLNLSAILN--KCDYSPRPIFFSTTSQLSSTSFLSPVASLRHE 58

Query: 60  STVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELI 119
           ST    Q D L   D +DD Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I
Sbjct: 59  STAVETQPDHLVQID-EDDGQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRII 117

Query: 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS 179
             SDF  VS+++AV+MY  M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS
Sbjct: 118 PDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALS 177

Query: 180 ADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239
            DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPI
Sbjct: 178 PDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPI 237

Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
           ATQLPQA GV YSLKM+KK+ACAV + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGW
Sbjct: 238 ATQLPQAAGVGYSLKMDKKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGW 297

Query: 300 AISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359
           AIST+ISEQFRSDGIVVKG+AYGIRSIRVDGNDALAVYTAV++AREMA++E+RPVL+EA+
Sbjct: 298 AISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYTAVRSAREMAVTEQRPVLIEAM 357

Query: 360 TYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQ 419
           TYRVGHHSTSDDSTKYR  DEI+YWK  R+P+NRFR WVE  GWWSE++E++LRS+ +KQ
Sbjct: 358 TYRVGHHSTSDDSTKYRAADEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQ 417

Query: 420 LLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYP 469
           LLQAIQ AEK EK  +TELF+DVYDV P NL EQE  LKE+++  PQDYP
Sbjct: 418 LLQAIQAAEKWEKQPLTELFNDVYDVKPKNLEEQELGLKELVEKQPQDYP 467

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15218984|ref|NP_173562.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] gi|9454571|gb|AAF87894.1|AC015447_4 branched-chain alpha keto-acid dehydrogenase E1 - alpha subunit [Arabidopsis thaliana] gi|20466298|gb|AAM20466.1| branched-chain alpha keto-acid dehydrogenase, putative [Arabidopsis thaliana] gi|23198122|gb|AAN15588.1| branched-chain alpha keto-acid dehydrogenase, putative [Arabidopsis thaliana] gi|332191978|gb|AEE30099.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312281515|dbj|BAJ33623.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225457857|ref|XP_002268860.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera] gi|302142724|emb|CBI19927.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082376|ref|XP_002306669.1| predicted protein [Populus trichocarpa] gi|222856118|gb|EEE93665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509346|ref|XP_003523411.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356515957|ref|XP_003526663.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|3822223|gb|AAC69851.1| branched-chain alpha keto-acid dehydrogenase E1 alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255558474|ref|XP_002520262.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223540481|gb|EEF42048.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2027072472 AT1G21400 "AT1G21400" [Arabido 0.985 0.989 0.675 1.7e-171
TAIR|locus:2184702472 AT5G09300 "AT5G09300" [Arabido 0.835 0.838 0.732 3.1e-163
DICTYBASE|DDB_G0286335441 bkdA "branched-chain alpha-ket 0.795 0.854 0.513 4.3e-109
MGI|MGI:107701442 Bckdha "branched chain ketoaci 0.818 0.877 0.484 7.1e-109
UNIPROTKB|F5H5P2479 BCKDHA "Uncharacterized protei 0.902 0.893 0.459 1.9e-106
RGD|2196441 Bckdha "branched chain ketoaci 0.818 0.879 0.487 1.9e-106
UNIPROTKB|P12694445 BCKDHA "2-oxoisovalerate dehyd 0.818 0.871 0.487 3.1e-106
UNIPROTKB|E2RPW4530 B3GNT8 "Uncharacterized protei 0.818 0.732 0.481 8.3e-106
UNIPROTKB|F1PI86480 B3GNT8 "Uncharacterized protei 0.818 0.808 0.481 8.3e-106
UNIPROTKB|F1RHA0411 LOC100738911 "Uncharacterized 0.818 0.944 0.481 1.4e-105
TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
 Identities = 317/469 (67%), Positives = 371/469 (79%)

Query:     1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSES 60
             MAIW  +S+ +   LR  + L  IL  +  S     +   Q +S +  S   F   R ES
Sbjct:     1 MAIWFARSKTLVSSLRHNLNLSTILIKRDYSHRPIFYTTSQLSSTAYLSP--FGSLRHES 58

Query:    61 TVAANQXXXXXXXXXXXXHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIK 120
             T    Q             Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I 
Sbjct:    59 TAVETQADHLVQQIDEVDAQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIP 118

Query:   121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA 180
              SDF  VS+++AV+MY  M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS 
Sbjct:   119 DSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSP 178

Query:   181 DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240
             DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPIA
Sbjct:   179 DDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIA 238

Query:   241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300
             TQLPQA GV YSLKM+KK+AC V + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGWA
Sbjct:   239 TQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWA 298

Query:   301 ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360
             IST+ISEQFRSDGIVVKG+AYGIRSIRVDGNDALAVY+AV++AREMA++E+RPVL+E +T
Sbjct:   299 ISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEMMT 358

Query:   361 YRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQL 420
             YRVGHHSTSDDSTKYR  DEI+YWK  R+P+NRFR WVE  GWWSE++E++LRS+ +KQL
Sbjct:   359 YRVGHHSTSDDSTKYRAADEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQL 418

Query:   421 LQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYP 469
             LQAIQ AEK EK  +TELF+DVYDV P NL EQE  LKE+++  PQDYP
Sbjct:   419 LQAIQAAEKWEKQPLTELFNDVYDVKPKNLEEQELGLKELVKKQPQDYP 467
GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA
TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:107701 Bckdha "branched chain ketoacid dehydrogenase E1, alpha polypeptide" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2196 Bckdha "branched chain ketoacid dehydrogenase E1, alpha polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPW4 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PI86 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHA0 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O45924ODBA_CAEEL1, ., 2, ., 4, ., 40.49860.80370.8839yesno
P11960ODBA_RAT1, ., 2, ., 4, ., 40.47250.85860.9229yesno
Q54M22ODBA_DICDI1, ., 2, ., 4, ., 40.52580.77210.8299yesno
P12694ODBA_HUMAN1, ., 2, ., 4, ., 40.48370.83540.8898yesno
P11178ODBA_BOVIN1, ., 2, ., 4, ., 40.47680.81850.8527yesno
A5A6H9ODBA_PANTR1, ., 2, ., 4, ., 40.48370.83540.8898yesno
P50136ODBA_MOUSE1, ., 2, ., 4, ., 40.48450.81850.8778yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.921
3rd Layer2.2.1LOW CONFIDENCE prediction!
4th Layer1.2.4.40.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_1001813
annotation not avaliable (472 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_105341.1
annotation not avaliable (352 aa)
••••••• 0.954
fgenesh2_kg.3__1430__AT3G13450.1
annotation not avaliable (360 aa)
••••••• 0.946
scaffold_300800.1
annotation not avaliable (484 aa)
• •• •• 0.887
fgenesh1_pm.C_scaffold_8000817
annotation not avaliable (366 aa)
••••••• 0.868
fgenesh2_kg.1__3184__AT1G30120.1
annotation not avaliable (406 aa)
•••  •• 0.771
fgenesh2_kg.4__1482__AT2G34590.1
annotation not avaliable (409 aa)
•••  •• 0.768
fgenesh2_kg.1__3892__AT1G48030.2
annotation not avaliable (505 aa)
•  • •• 0.668
scaffold_302028.1
annotation not avaliable (507 aa)
•  • •• 0.659
scaffold_304435.1
annotation not avaliable (374 aa)
•       0.535
scaffold_501390.1
annotation not avaliable (409 aa)
•  • •• 0.521

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 1e-144
TIGR03181341 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E 1e-132
COG1071358 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena 1e-131
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 1e-110
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 3e-70
PLN02269362 PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp 5e-44
CHL00149341 CHL00149, odpA, pyruvate dehydrogenase E1 componen 5e-40
PLN02374433 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl 2e-32
cd00568168 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) 6e-13
cd02012255 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami 4e-12
COG3959243 COG3959, COG3959, Transketolase, N-terminal subuni 1e-08
cd02007195 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam 3e-08
PRK05899 586 PRK05899, PRK05899, transketolase; Reviewed 2e-07
cd02002178 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa 5e-07
pfam02775151 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en 5e-04
TIGR00118558 TIGR00118, acolac_lg, acetolactate synthase, large 0.002
COG0021 663 COG0021, TktA, Transketolase [Carbohydrate transpo 0.002
TIGR00204 617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 0.003
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information 
 Score =  414 bits (1066), Expect = e-144
 Identities = 127/294 (43%), Positives = 181/294 (61%), Gaps = 2/294 (0%)

Query: 135 MYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFILPQYREPGV 193
           +Y  MV ++  D  L E  RQG+   FY  +IG+EA+ +G AAAL   D++ P YR+ G 
Sbjct: 1   LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60

Query: 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253
            L RG  L++   ++F  +    KGR   +H G K+ N+   +  +  Q+P A G A +L
Sbjct: 61  ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120

Query: 254 KMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDG 313
           K   +D  AV + GDG T+EGDFH ALNFAA+ + PV+F+C NNG+AIST  S Q     
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180

Query: 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST 373
           I  +  AYGI  IRVDGND LAVY A + A E A +   P L+EA+TYR+G HSTSDD +
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240

Query: 374 KYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVA 427
           +YRT +E+E WK +R PI R R ++   G  +E+E   + + +K ++ +A++ A
Sbjct: 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed Back     alignment and domain information
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Back     alignment and domain information
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
KOG1182432 consensus Branched chain alpha-keto acid dehydroge 100.0
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 100.0
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 100.0
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 100.0
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 100.0
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 100.0
KOG0225394 consensus Pyruvate dehydrogenase E1, alpha subunit 100.0
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 100.0
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 100.0
PRK09404 924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
TIGR00239 929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PRK12315 581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
COG0567 906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 99.97
KOG0450 1017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 99.97
KOG0451 913 consensus Predicted 2-oxoglutarate dehydrogenase, 99.95
TIGR00232 653 tktlase_bact transketolase, bacterial and yeast. T 99.94
PRK12754 663 transketolase; Reviewed 99.94
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 99.94
PTZ00089 661 transketolase; Provisional 99.93
PRK12753 663 transketolase; Reviewed 99.93
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 99.93
COG3959243 Transketolase, N-terminal subunit [Carbohydrate tr 99.93
PRK05899 624 transketolase; Reviewed 99.93
PLN02790 654 transketolase 99.92
PRK05444 580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.91
PF00456332 Transketolase_N: Transketolase, thiamine diphospha 99.91
cd02017386 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam 99.9
TIGR00204 617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 99.9
cd02011227 TPP_PK Thiamine pyrophosphate (TPP) family, Phosph 99.9
TIGR00759 885 aceE pyruvate dehydrogenase E1 component, homodime 99.88
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 99.87
PRK12571 641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.87
COG0021 663 TktA Transketolase [Carbohydrate transport and met 99.86
PLN02582 677 1-deoxy-D-xylulose-5-phosphate synthase 99.85
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 99.85
PLN02234 641 1-deoxy-D-xylulose-5-phosphate synthase 99.85
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 99.84
KOG0523 632 consensus Transketolase [Carbohydrate transport an 99.82
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 99.8
PRK05261 785 putative phosphoketolase; Provisional 99.74
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 99.73
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 99.73
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 99.71
PF13292270 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn 99.7
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 99.7
COG1154 627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 99.69
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 99.68
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 99.68
PRK06163202 hypothetical protein; Provisional 99.65
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 99.65
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 99.65
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 99.65
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 99.63
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 99.62
PLN02225 701 1-deoxy-D-xylulose-5-phosphate synthase 99.62
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 99.61
cd02005183 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, 99.61
PRK07524535 hypothetical protein; Provisional 99.59
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 99.59
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 99.59
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 99.58
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 99.57
PRK08327569 acetolactate synthase catalytic subunit; Validated 99.57
PRK07092530 benzoylformate decarboxylase; Reviewed 99.56
PRK08266542 hypothetical protein; Provisional 99.54
COG0028550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 99.53
TIGR01504588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 99.53
PRK06154565 hypothetical protein; Provisional 99.53
PRK12474518 hypothetical protein; Provisional 99.52
PRK06546578 pyruvate dehydrogenase; Provisional 99.52
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 99.51
PRK06725570 acetolactate synthase 3 catalytic subunit; Validat 99.51
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 99.51
PRK09124574 pyruvate dehydrogenase; Provisional 99.5
PRK11269591 glyoxylate carboligase; Provisional 99.5
PRK07586514 hypothetical protein; Validated 99.5
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 99.49
PRK08199557 thiamine pyrophosphate protein; Validated 99.49
PRK07064544 hypothetical protein; Provisional 99.49
PRK07418616 acetolactate synthase 3 catalytic subunit; Reviewe 99.49
PRK06112578 acetolactate synthase catalytic subunit; Validated 99.48
PRK05858542 hypothetical protein; Provisional 99.48
TIGR02720575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 99.48
PRK06457549 pyruvate dehydrogenase; Provisional 99.48
PRK06882574 acetolactate synthase 3 catalytic subunit; Validat 99.47
PRK07710571 acetolactate synthase catalytic subunit; Reviewed 99.47
PRK07525588 sulfoacetaldehyde acetyltransferase; Validated 99.47
PRK07979574 acetolactate synthase 3 catalytic subunit; Validat 99.47
TIGR03393539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 99.47
TIGR03457579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 99.47
PRK08322547 acetolactate synthase; Reviewed 99.47
PRK09107595 acetolactate synthase 3 catalytic subunit; Validat 99.46
PLN02573578 pyruvate decarboxylase 99.46
PRK08611576 pyruvate oxidase; Provisional 99.45
PRK06456572 acetolactate synthase catalytic subunit; Reviewed 99.45
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 99.45
PRK06965587 acetolactate synthase 3 catalytic subunit; Validat 99.45
PRK08617552 acetolactate synthase; Reviewed 99.45
PRK08979572 acetolactate synthase 3 catalytic subunit; Validat 99.45
PRK08155564 acetolactate synthase catalytic subunit; Validated 99.44
PRK06466574 acetolactate synthase 3 catalytic subunit; Validat 99.44
PRK05778301 2-oxoglutarate ferredoxin oxidoreductase subunit b 99.44
CHL00099585 ilvB acetohydroxyacid synthase large subunit 99.44
PRK08527563 acetolactate synthase 3 catalytic subunit; Validat 99.44
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 99.43
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 99.43
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 99.43
PRK08273597 thiamine pyrophosphate protein; Provisional 99.43
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 99.43
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 99.43
PLN02470585 acetolactate synthase 99.42
PRK09259569 putative oxalyl-CoA decarboxylase; Validated 99.42
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 99.41
TIGR03394535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 99.4
PRK07789612 acetolactate synthase 1 catalytic subunit; Validat 99.39
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 99.37
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 99.37
PRK07449568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 99.36
PRK07282566 acetolactate synthase catalytic subunit; Reviewed 99.35
COG2609 887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.34
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 99.3
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 99.3
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 99.26
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 99.24
TIGR03336595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.19
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 99.11
KOG1185571 consensus Thiamine pyrophosphate-requiring enzyme 99.06
COG3961557 Pyruvate decarboxylase and related thiamine pyroph 99.02
PF09364379 XFP_N: XFP N-terminal domain; InterPro: IPR018970 98.86
KOG4166675 consensus Thiamine pyrophosphate-requiring enzyme 98.84
COG3960592 Glyoxylate carboligase [General function predictio 98.81
COG3962617 Acetolactate synthase [Amino acid transport and me 98.75
KOG1184561 consensus Thiamine pyrophosphate-requiring enzyme 98.55
COG1013294 PorB Pyruvate:ferredoxin oxidoreductase and relate 98.45
COG3957 793 Phosphoketolase [Carbohydrate transport and metabo 97.98
cd03377365 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), 97.55
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 97.37
COG1165566 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car 97.25
TIGR021761165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 96.88
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 96.75
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 96.74
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 96.66
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 96.11
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 96.11
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.06
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 95.54
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 95.35
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 95.27
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 94.79
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 94.22
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 94.12
PRK08611 576 pyruvate oxidase; Provisional 94.08
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 94.08
PRK06457 549 pyruvate dehydrogenase; Provisional 93.6
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 93.55
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 93.46
PRK07064 544 hypothetical protein; Provisional 93.44
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 93.32
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 93.27
PRK06112 578 acetolactate synthase catalytic subunit; Validated 93.21
PRK07524 535 hypothetical protein; Provisional 93.11
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 93.05
PRK07586 514 hypothetical protein; Validated 93.0
PLN02470 585 acetolactate synthase 92.94
PRK08273 597 thiamine pyrophosphate protein; Provisional 92.93
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 92.9
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 92.85
PRK08322 547 acetolactate synthase; Reviewed 92.79
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 92.75
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 92.75
PRK08155 564 acetolactate synthase catalytic subunit; Validated 92.75
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 92.61
KOG4166 675 consensus Thiamine pyrophosphate-requiring enzyme 92.59
PRK08199 557 thiamine pyrophosphate protein; Validated 92.58
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 92.56
PRK08266 542 hypothetical protein; Provisional 92.55
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 92.38
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 92.37
PRK11269 591 glyoxylate carboligase; Provisional 92.34
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 92.01
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 92.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 91.91
PRK12474 518 hypothetical protein; Provisional 91.87
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 91.87
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 91.8
PRK08366 390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 91.73
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 91.7
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 91.57
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 91.56
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 91.43
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 91.23
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 91.15
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 91.05
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 91.02
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 91.0
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 90.8
PRK05858 542 hypothetical protein; Provisional 90.57
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 90.55
PRK08617 552 acetolactate synthase; Reviewed 90.5
PRK08327 569 acetolactate synthase catalytic subunit; Validated 90.41
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 89.51
PRK06154 565 hypothetical protein; Provisional 89.13
PRK09622 407 porA pyruvate flavodoxin oxidoreductase subunit al 88.81
PLN02573 578 pyruvate decarboxylase 88.65
PRK09124 574 pyruvate dehydrogenase; Provisional 88.52
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 88.16
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 88.14
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 88.02
PRK08367 394 porA pyruvate ferredoxin oxidoreductase subunit al 87.85
PRK06546 578 pyruvate dehydrogenase; Provisional 87.79
PRK07092 530 benzoylformate decarboxylase; Reviewed 87.33
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 86.46
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 85.37
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 85.16
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 84.25
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 84.24
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 82.95
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 82.24
PTZ00089661 transketolase; Provisional 80.53
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 80.05
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-115  Score=853.08  Aligned_cols=393  Identities=64%  Similarity=1.077  Sum_probs=386.8

Q ss_pred             ccccCCCCccCcccccccCCCCCCCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 011937           81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF  160 (474)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f  160 (474)
                      ..+|||+++.||++|+|+.++..+.||||||||.||.+++++++|.++.+..++||++|+++++||.++++.||||||+|
T Consensus        37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF  116 (432)
T KOG1182|consen   37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF  116 (432)
T ss_pred             hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCC
Q 011937          161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA  240 (474)
Q Consensus       161 ~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG  240 (474)
                      |++++|+||+.||+|+||.|+|+||+|||+.|++||||++++++|+|||||..+.++|||||+||+++++|++++++||.
T Consensus       117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla  196 (432)
T KOG1182|consen  117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA  196 (432)
T ss_pred             EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhccCC-ceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937          241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR  319 (474)
Q Consensus       241 ~~lp~AvGaA~A~k~~~~d-~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~  319 (474)
                      +|||+|+|+|||+|+++.+ +++||+||||+++||++|.+||||+++++||||+|.||||+||||+++|+.+++|+.++.
T Consensus       197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~  276 (432)
T KOG1182|consen  197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGP  276 (432)
T ss_pred             hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEecc
Confidence            9999999999999987655 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 011937          320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVE  399 (474)
Q Consensus       320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~  399 (474)
                      +||+.+|+|||||++|||.|+++|+++|....+|+|||++|||++|||||||+++||+.+|++.|.+.++||.|||+|++
T Consensus       277 aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~  356 (432)
T KOG1182|consen  277 AYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIE  356 (432)
T ss_pred             ccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011937          400 RQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVP  473 (474)
Q Consensus       400 ~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~~~p~~~~~~~~  473 (474)
                      .+|||+|+++.++++++|++|.++++.||+.++|++.+||+|||+++|.+|++|+.+|++|+++||++||...|
T Consensus       357 ~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~~  430 (432)
T KOG1182|consen  357 SNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKDF  430 (432)
T ss_pred             hcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996654

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 Back     alignment and domain information
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG3960 Glyoxylate carboligase [General function prediction only] Back     alignment and domain information
>COG3962 Acetolactate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
1dtw_A400 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 1e-115
2bff_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-115
2j9f_A400 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 1e-115
1x7y_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-115
1x7w_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-115
1x80_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-115
1x7z_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-115
1x7x_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-115
1olu_A400 Roles Of His291-Alpha And His146-Beta' In The Reduc 1e-114
1v16_A400 Crosstalk Between Cofactor Binding And The Phosphor 1e-114
2bfc_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-114
1v11_A400 Crosstalk Between Cofactor Binding And The Phosphor 1e-113
2bfe_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-113
2bfb_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-113
1v1m_A400 Crosstalk Between Cofactor Binding And The Phosphor 1e-113
2bfd_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-113
1w85_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1 2e-63
3duf_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 2e-63
1w88_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1( 6e-63
3dva_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-62
1um9_A367 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 3e-62
2bp7_A410 New Crystal Form Of The Pseudomonas Putida Branched 3e-58
1qs0_A407 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 4e-55
3exe_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 6e-31
3exf_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-30
3exi_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-30
2ozl_A365 Human Pyruvate Dehydrogenase S264e Variant Length = 2e-30
3exh_C382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 4e-30
1ni4_A365 Human Pyruvate Dehydrogenase Length = 365 9e-29
1qgd_A 662 Transketolase From Escherichia Coli Length = 662 6e-05
2r5n_A 669 Crystal Structure Of Transketolase From Escherichia 6e-05
3hyl_A 690 Crystal Structure Of Transketolase From Bacillus An 6e-04
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 Back     alignment and structure 
Iteration: 1

 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/388 (48%), Positives = 262/388 (67%)
Query: 84  FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
           FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L 
Sbjct: 9   FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
            MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ 
Sbjct: 69  TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
           F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
            Y G+G  SEGD HA  NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
            SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
           W  +  PI+R R+++  QGWW E++E   R   ++++++A + AE+  KP    LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
              P+ L +Q++ L   +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 Back     alignment and structure
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 Back     alignment and structure
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 Back     alignment and structure
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 Back     alignment and structure
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 Back     alignment and structure
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 Back     alignment and structure
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 Back     alignment and structure
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli Length = 662 Back     alignment and structure
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli In Noncovalent Complex With Acceptor Aldose Ribose 5-Phosphate Length = 669 Back     alignment and structure
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis Length = 690 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 0.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 0.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 0.0
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 0.0
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 5e-80
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 2e-07
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 6e-04
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Back     alignment and structure
 Score =  583 bits (1506), Expect = 0.0
 Identities = 186/389 (47%), Positives = 260/389 (66%)

Query: 83  DFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTL 142
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L
Sbjct: 8   QFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLL 67

Query: 143 QVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202
             MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  Q RE GVL++R Y L+
Sbjct: 68  NTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLE 127

Query: 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262
            F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   
Sbjct: 128 LFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVV 187

Query: 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322
           + Y G+G  SEGD HA  NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YG
Sbjct: 188 ICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYG 247

Query: 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIE 382
           I SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GH STSDDS+ +R++DE+ 
Sbjct: 248 IMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVN 307

Query: 383 YWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDV 442
           YW  +  PI+R R+++  QGWW E++E   R   ++++++A + AE+  KP    LFSDV
Sbjct: 308 YWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDV 367

Query: 443 YDVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
           Y   P+ L +Q++ L   +QTY + YP D
Sbjct: 368 YQEMPAQLRKQQESLARHLQTYGEHYPLD 396
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 100.0
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 100.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 100.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 100.0
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 100.0
2yic_A 868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2jgd_A 933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2o1s_A 621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 99.97
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 99.96
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 99.96
1r9j_A 673 Transketolase; domains, EACH of the alpha/beta typ 99.96
2o1x_A 629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 99.96
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 99.96
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 99.95
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 99.95
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 99.95
3uk1_A 711 Transketolase; structural genomics, seattle struct 99.94
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 99.94
3l84_A 632 Transketolase; TKT, structural genomics, center fo 99.94
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 99.94
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 99.93
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 99.9
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 99.65
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 99.62
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 99.61
2uz1_A563 Benzaldehyde lyase; thiamine diphosphate, thiamine 99.59
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 99.58
2vk8_A563 Pyruvate decarboxylase isozyme 1; asymmetric activ 99.58
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 99.57
2iht_A573 Carboxyethylarginine synthase; thiamin diphosphate 99.57
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 99.56
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 99.55
2pgn_A589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 99.55
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 99.54
2vbi_A566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 99.54
2vbf_A570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 99.53
2wvg_A568 PDC, pyruvate decarboxylase; thiamine diphosphate, 99.52
2nxw_A565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 99.52
1ovm_A552 Indole-3-pyruvate decarboxylase; thiamine diphosph 99.51
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 99.51
2q28_A564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 99.49
3hww_A556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 99.46
2x7j_A604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 99.44
3lq1_A578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 99.4
2c42_A1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 98.7
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 93.6
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 93.28
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 93.23
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 93.02
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 92.88
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 92.19
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 92.06
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 91.97
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 91.78
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 91.7
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 91.34
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 91.24
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 91.18
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 91.08
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 89.82
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 88.94
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 88.87
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 88.75
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 88.51
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 88.45
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 88.24
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 87.1
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 86.96
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 86.62
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 86.39
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 85.31
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 85.16
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 85.03
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 84.96
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 84.46
1gpu_A680 Transketolase; transferase(ketone residues); HET: 84.08
3l84_A632 Transketolase; TKT, structural genomics, center fo 83.71
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 83.3
1ovm_A 552 Indole-3-pyruvate decarboxylase; thiamine diphosph 82.18
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 81.52
3uk1_A711 Transketolase; structural genomics, seattle struct 80.53
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
Probab=100.00  E-value=3.9e-90  Score=720.27  Aligned_cols=394  Identities=47%  Similarity=0.861  Sum_probs=361.4

Q ss_pred             cccccCCCCccCcccccccCCCCCCCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 011937           80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS  159 (474)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~  159 (474)
                      +.++|||+++.||++|+|+++.....+|+|||||+||+++++...+.+++++++++|+.|+++|.||+++.++|+||||+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~   84 (400)
T 2bfd_A            5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS   84 (400)
T ss_dssp             -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            47899999999999999999988889999999999999998766688999999999999999999999999999999999


Q ss_pred             ccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCC
Q 011937          160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI  239 (474)
Q Consensus       160 f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~l  239 (474)
                      ||+++.||||+++|++++|+++|+|+++||+|++++++|++++++|++++|+.+++++|+++++|++.+..++.+.+|+|
T Consensus        85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l  164 (400)
T 2bfd_A           85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL  164 (400)
T ss_dssp             CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred             eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             CCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937          240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR  319 (474)
Q Consensus       240 G~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~  319 (474)
                      |+++|+|+|+|+|.++++.+++|||++|||++++|.+||+||+|+.++|||||||+||+|+|+++...+++..+++++++
T Consensus       165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~  244 (400)
T 2bfd_A          165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP  244 (400)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred             cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888889999999


Q ss_pred             HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 011937          320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVE  399 (474)
Q Consensus       320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~  399 (474)
                      +|||++++|||||+++|++|+++|+++||++++|+|||++|||.+|||++|+++.||+++|++.|++.+|||.+|+++|+
T Consensus       245 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~  324 (400)
T 2bfd_A          245 GYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLL  324 (400)
T ss_dssp             GGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHT
T ss_pred             HcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999864589999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011937          400 RQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVP  473 (474)
Q Consensus       400 ~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~~~p~~~~~~~~  473 (474)
                      +.|||+++++++++++++++|++++++|++.|.|+++++|+|||++.++++.+|+++|+++++++|++|+.++|
T Consensus       325 ~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~  398 (400)
T 2bfd_A          325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF  398 (400)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred             HCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998765
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d2bfda1395 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid 1e-103
d1w85a_365 c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd 7e-83
d1qs0a_407 c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B 2e-80
d1umda_362 c.36.1.11 (A:) Branched-chain alpha-keto acid dehy 4e-74
d2ozla1361 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de 7e-71
d1r9ja2336 c.36.1.10 (A:1-336) Transketolase (TK), PP module 5e-05
d1itza1338 c.36.1.10 (A:10-347) Transketolase (TK), PP module 8e-05
d2ieaa2415 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com 0.001
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  312 bits (800), Expect = e-103
 Identities = 186/388 (47%), Positives = 260/388 (67%)

Query: 84  FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
           FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L 
Sbjct: 4   FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 63

Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
            MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  Q RE GVL++R Y L+ 
Sbjct: 64  TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLEL 123

Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
           F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   +
Sbjct: 124 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 183

Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
            Y G+G  SEGD HA  NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI
Sbjct: 184 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 243

Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
            SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GH STSDDS+ +R++DE+ Y
Sbjct: 244 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNY 303

Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
           W  +  PI+R R+++  QGWW E++E   R   ++++++A + AE+  KP    LFSDVY
Sbjct: 304 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 363

Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
              P+ L +Q++ L   +QTY + YP D
Sbjct: 364 QEMPAQLRKQQESLARHLQTYGEHYPLD 391
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 336 Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Length = 338 Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 100.0
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 100.0
d2ozla1361 E1-beta subunit of pyruvate dehydrogenase (PP modu 100.0
d1r9ja2336 Transketolase (TK), PP module {Leishmania mexicana 99.89
d2r8oa2331 Transketolase (TK), PP module {Escherichia coli [T 99.89
d1gpua1335 Transketolase (TK), PP module {Baker's yeast (Sacc 99.88
d1itza1338 Transketolase (TK), PP module {Maize (Zea mays) [T 99.85
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 99.77
d2ieaa2415 Pyruvate dehydrogenase E1 component, PP module {Es 99.7
d2ez9a3228 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 99.69
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 99.66
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 99.65
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 99.64
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 99.6
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 99.58
d1pvda3196 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 99.58
d1zpda3204 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 99.57
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 99.54
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 99.54
d2c42a2447 Pyruvate-ferredoxin oxidoreductase, PFOR, domains 98.09
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 95.73
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 95.55
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 95.5
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 95.42
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 95.35
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 94.6
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 94.59
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 94.53
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 94.29
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 92.83
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 91.31
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 89.07
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 88.4
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 85.87
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 84.02
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 82.59
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-100  Score=794.09  Aligned_cols=392  Identities=47%  Similarity=0.866  Sum_probs=363.9

Q ss_pred             cccCCCCccCcccccccCCCCCCCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 011937           82 LDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFY  161 (474)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~  161 (474)
                      ..|||+++.|+.+++|..+.....+|+|||||.||+++++...+++|+|+++++||.|+++|.||+++.++|+||+|+||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~   81 (395)
T d2bfda1           2 PQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFY   81 (395)
T ss_dssp             CCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC
T ss_pred             CCCCCCCCccccccccCCCccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            36999999999999999998888999999999999999988889999999999999999999999999999999999999


Q ss_pred             ccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCC
Q 011937          162 LTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIAT  241 (474)
Q Consensus       162 ~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~  241 (474)
                      +++.||||++||++++|+++||||++||+||++|+||++++++|+|++|+.+|+++|++|++|+++++.|+++.++++|+
T Consensus        82 ~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~  161 (395)
T d2bfda1          82 MTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLAT  161 (395)
T ss_dssp             CCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTT
T ss_pred             cCCCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHc
Q 011937          242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY  321 (474)
Q Consensus       242 ~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ay  321 (474)
                      ++|+|+|+|+|.|+++.+++++|++||||+++|.|||+||+|+.|+|||||||+||+|+|+|+...++..+++++++++|
T Consensus       162 ~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~  241 (395)
T d2bfda1         162 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY  241 (395)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred             cccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHc
Q 011937          322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQ  401 (474)
Q Consensus       322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~  401 (474)
                      ||++++|||||+.+|++++++|++++|+++||+|||++|||++||+++||+..||+++|++.|++..|||.+|+++|+++
T Consensus       242 gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~~  321 (395)
T d2bfda1         242 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQ  321 (395)
T ss_dssp             TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTTT
T ss_pred             ccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCcCCcccccCHHHHHHHHhcCCHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999985445999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011937          402 GWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVP  473 (474)
Q Consensus       402 G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~~~p~~~~~~~~  473 (474)
                      |+||++++++|+++++++|++|+++|+++|.|+++++|+|||+++|++|++|+++++++|+++||.||+++|
T Consensus       322 g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~  393 (395)
T d2bfda1         322 GWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF  393 (395)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHhCcccCChhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure