Citrus Sinensis ID: 011939

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
Protein Sequence
MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRTQFCKSTNQ
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHccHHHHcccccEEEccccccccccHHHHHHcccEEEEEEEccccccccccccccEEccccccccHHHHccccccccccccccccccccccHccccccccHHHHHHHHHHHHHccccccccHHHHccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
msrqqnqtqnffpgkirkrgcsssassTSSIVQNYRFKRAILIgkrgggggsatpvptwrlmrttpssvLRAIDsqseyggfvNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEmnempspklretsggggyderRIRREARARERERERVTRslhsgslpphlsdpshspvsermdrsgtgshhrrsssisqrlrltesnggvldsvsnasLMEVetrsraqtpsgstvgvkTRLKDVSNALTTSKELLKIINRmwgqedrpsssmSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRnqkgkrkrtqfckstnq
Flexible Loop (DISEMBL)
msrqqnqtqnffpgkirkrgcsssasstssivqnYRFKRAIligkrgggggsatpvptwrlmrtTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQqhqhsqqpVSARKLAATLWEMnempspklretsggggyderrirreararererervtrslhsgslpphlsdpshspvsermdrsgtgshhrrsssisqrlrltesnggvldsvsnASLMEVetrsraqtpsgstvgvktrlkdvsnalttskELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESiageleverKLRRRFESLNKKLGKELAETKHSLLkavkdldtekraRVVIEQVCDElardinddkseveeLKRESAialeevekereMIQVADVLREERAQIKLSeakyqleeknaAVDKLRSQLEafsrnqkgkrkrtqfckstnq
Low Complexity Region (SEG)
MSRQQNQTQNFFPGKIRKRGCsssasstssIVQNYRFKRAILIGKRgggggSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKqhqlqlqqqhqhsqqPVSARKLAATLWEMNEMPSPKLRETSGGGGYDerrirreararerererVTRslhsgslpphlsdpshspvsERMDrsgtgshhrrsssisqrlrltESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRTQFCKSTNQ
Disordered region (IsUnstruct)
************************************F**AIL*********************************************************************************************************************************************************************************************************LTTSKELLKIINRMW****************************************ISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV*************************LLKAVKDLDTEKRARVVIEQVCDELA*****************************************************************************************
Disordered Region (DISOPRED)
************************************************************************************************************LAATLWEMNE**********************************************************************************************************************************ELLKII**********************ELERA**************************************************************************************************VCDE********************************IQVADVLRE***********************LRS************************
Disordered Region (DISEMBL)
*********NFFPGKI**************IVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNK*********************RKLAATLWEMNEMPSPK**********DERRIRRE******************************************************LRLTESNGGVLDSVSNASLME***************GVKTRLKDVSNALTTSKELLKIINRMWG***********VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS******************
Disordered Region (DISPRO)
*******TQNFFPGKIRK***********SIVQNYRFKRAILIGKRG**GGSATPVPTWR******************************************PVSARKLAATLWEMNEMPSPK*****************************************************************************************************************L*DVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQVADVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQKGKRKRTQFCKSTNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	474	2.2.26 [Sep-21-2011]
Q66GQ2	623	Uncharacterized protein A	no	no	0.689	0.524	0.326	3e-32

>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 59/386 (15%)

Query: 104 VSARKLAATLWEMNEM---------------PSPKL-RETSGGGGYDERRIRREARARER 147
           VS+RKLAA  WE ++                 S K+ R  +G  G   RR        +R
Sbjct: 46  VSSRKLAAAFWEFHQYHYKDEEDCSYSYLSSASAKMHRGPNGFAGASSRR--------QR 97

Query: 148 ERERVTRSLHSGSLPPHLSDPS--HSPVSERMDRSGTG----SHHRRSSSISQRLRLTES 201
             + V    +   L   L DPS  H P S    R   G     HH+   SI +       
Sbjct: 98  HGKAVAVKENGLDLSQFLRDPSPDHQPDSAGSLRRQIGQMLIKHHQ---SIDR------- 147

Query: 202 NGGVLDSVSNASL---MEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMW 258
           N   L  VS AS    +EV T ++A TPS S        ++    L TS ELLK++NR+W
Sbjct: 148 NNHALQPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIW 207

Query: 259 GQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER 318
             E++  S++SL+ AL  E+  +R+++ +L++ Q++D+ E+  ++K  AEEK   KNKE 
Sbjct: 208 SLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEV 267

Query: 319 EVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIE 378
           E + +A++S+   LE ERKLR+R ESL++K+ +EL+E K SL   VK+L+   ++  ++E
Sbjct: 268 ERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMME 327

Query: 379 QVCDELARDINDDKSEVEELKRESAIALEEVEK--------EREMIQVADVLREERAQIK 430
            +CDE A+ I   + E+  LK+++      ++K        ++ ++ +A+   +ER Q++
Sbjct: 328 LLCDEFAKGIKSYEEEIHGLKKKN------LDKDWAGRGGGDQLVLHIAESWLDERMQMR 381

Query: 431 LSEAKYQLEEKNAAV-DKLRSQLEAF 455
           L E    L  KN +V DKL  ++E F
Sbjct: 382 L-EGGDTLNGKNRSVLDKLEVEIETF 406

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
297740164	583	unnamed protein product [Vitis vinifera]	0.913	0.742	0.705	1e-177
359482028	693	PREDICTED: uncharacterized protein At5g4	0.913	0.624	0.705	1e-176
255579349	680	conserved hypothetical protein [Ricinus	0.917	0.639	0.757	1e-174
224091941	667	predicted protein [Populus trichocarpa]	0.924	0.656	0.728	1e-171
356570881	666	PREDICTED: uncharacterized protein At5g4	0.890	0.633	0.692	1e-161
449437432	668	PREDICTED: uncharacterized protein At5g4	0.932	0.661	0.661	1e-158
297829712	621	hypothetical protein ARALYDRAFT_478504 [	0.934	0.713	0.657	1e-155
15724288	622	AT3g11590/F24K9_26 [Arabidopsis thaliana	0.936	0.713	0.655	1e-154
18399293	622	uncharacterized protein [Arabidopsis tha	0.936	0.713	0.655	1e-153
356505402	660	PREDICTED: uncharacterized protein At5g4	0.879	0.631	0.691	1e-152

>gi|297740164|emb|CBI30346.3| unnamed protein product [Vitis vinifera]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 328/465 (70%), Positives = 384/465 (82%), Gaps = 32/465 (6%)

Query: 1   MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           M RQ +  Q   PGKIRKRGCSSS+S++S ++Q YRFKRAIL+GKRGG   S+TPVPTWR
Sbjct: 1   MPRQNHGIQGLIPGKIRKRGCSSSSSTSS-VLQKYRFKRAILVGKRGG---SSTPVPTWR 56

Query: 61  LMRT-TPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEM 119
           LM + +P+S +RA++S    GG   KAKQ              PVSARKLAATLWEMNEM
Sbjct: 57  LMNSRSPASAMRAMESPRSMGG--GKAKQ-------------APVSARKLAATLWEMNEM 101

Query: 120 PSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDR 179
           PSP+          DE+R +RE R RER    V RSLHSGSLPPHLSDPSHSPVSER+DR
Sbjct: 102 PSPR--------ADDEKRSKREVRGRER----VARSLHSGSLPPHLSDPSHSPVSERIDR 149

Query: 180 SGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKD 239
           SGT S+ R++SSISQRLRL + N GV+DS S+ASLME+E RSR QTPSGSTVGV+TRLKD
Sbjct: 150 SGTSSYRRKTSSISQRLRLADHNVGVMDSFSSASLMEIEIRSRGQTPSGSTVGVRTRLKD 209

Query: 240 VSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEI 299
           VSNALTTSKELLKII+R+WG ED+PSSSMSL+SALHAELERARL +NQLIQEQRSDQSEI
Sbjct: 210 VSNALTTSKELLKIISRIWGHEDQPSSSMSLISALHAELERARLHINQLIQEQRSDQSEI 269

Query: 300 SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHS 359
           +YLMKCFAEEKAAWK+KE++V+EAAIESIAGELEVERKLRRRFESLNKKLG+ELAETK S
Sbjct: 270 NYLMKCFAEEKAAWKSKEQQVIEAAIESIAGELEVERKLRRRFESLNKKLGRELAETKTS 329

Query: 360 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVA 419
           L+KAVK+L+ EKRAR ++EQVCDEL +D+ +DK EVEE+KRESA   EE EKERE++Q+A
Sbjct: 330 LIKAVKELECEKRAREIMEQVCDELTQDVGEDKDEVEEIKRESAKVREEAEKEREILQLA 389

Query: 420 DVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           DVLREERAQ K+SEAKYQ EEKNA V+KL+++LE F R++K K K
Sbjct: 390 DVLREERAQSKISEAKYQFEEKNAVVEKLKNELEVFMRSKKAKEK 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482028|ref|XP_002275906.2| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 328/465 (70%), Positives = 384/465 (82%), Gaps = 32/465 (6%)

Query: 1   MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           M RQ +  Q   PGKIRKRGCSSS+S++S ++Q YRFKRAIL+GKRGG   S+TPVPTWR
Sbjct: 1   MPRQNHGIQGLIPGKIRKRGCSSSSSTSS-VLQKYRFKRAILVGKRGG---SSTPVPTWR 56

Query: 61  LMRT-TPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEM 119
           LM + +P+S +RA++S    GG   KAKQ              PVSARKLAATLWEMNEM
Sbjct: 57  LMNSRSPASAMRAMESPRSMGG--GKAKQ-------------APVSARKLAATLWEMNEM 101

Query: 120 PSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDR 179
           PSP+          DE+R +RE R RER    V RSLHSGSLPPHLSDPSHSPVSER+DR
Sbjct: 102 PSPR--------ADDEKRSKREVRGRER----VARSLHSGSLPPHLSDPSHSPVSERIDR 149

Query: 180 SGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKD 239
           SGT S+ R++SSISQRLRL + N GV+DS S+ASLME+E RSR QTPSGSTVGV+TRLKD
Sbjct: 150 SGTSSYRRKTSSISQRLRLADHNVGVMDSFSSASLMEIEIRSRGQTPSGSTVGVRTRLKD 209

Query: 240 VSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEI 299
           VSNALTTSKELLKII+R+WG ED+PSSSMSL+SALHAELERARL +NQLIQEQRSDQSEI
Sbjct: 210 VSNALTTSKELLKIISRIWGHEDQPSSSMSLISALHAELERARLHINQLIQEQRSDQSEI 269

Query: 300 SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHS 359
           +YLMKCFAEEKAAWK+KE++V+EAAIESIAGELEVERKLRRRFESLNKKLG+ELAETK S
Sbjct: 270 NYLMKCFAEEKAAWKSKEQQVIEAAIESIAGELEVERKLRRRFESLNKKLGRELAETKTS 329

Query: 360 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVA 419
           L+KAVK+L+ EKRAR ++EQVCDEL +D+ +DK EVEE+KRESA   EE EKERE++Q+A
Sbjct: 330 LIKAVKELECEKRAREIMEQVCDELTQDVGEDKDEVEEIKRESAKVREEAEKEREILQLA 389

Query: 420 DVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           DVLREERAQ K+SEAKYQ EEKNA V+KL+++LE F R++K K K
Sbjct: 390 DVLREERAQSKISEAKYQFEEKNAVVEKLKNELEVFMRSKKAKEK 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579349|ref|XP_002530519.1| conserved hypothetical protein [Ricinus communis] gi|223529923|gb|EEF31851.1| conserved hypothetical protein [Ricinus communis]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 349/461 (75%), Positives = 389/461 (84%), Gaps = 26/461 (5%)

Query: 5   QNQT----QNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           QNQ+    +   PGKIRKRGCSSSASS+SSI+QNYRFKRAIL+G RGG   S TPVPTWR
Sbjct: 4   QNQSRASVEELLPGKIRKRGCSSSASSSSSIIQNYRFKRAILVGNRGG---STTPVPTWR 60

Query: 61  LMRTT--PSSVLRAIDS----QSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           LM TT  PSS LRA DS     S+ GG V    + +L LQQQ      PVSARKLAATLW
Sbjct: 61  LMGTTRTPSSALRARDSPKYAASQNGGIV----KGKLMLQQQQA---APVSARKLAATLW 113

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           E+NEMPSPK++E  G    +ERR+RRE + RER      RS+HSGSLPPHLSDPSHSPVS
Sbjct: 114 ELNEMPSPKMKEVVGS---EERRLRREGKGRERAG--AARSVHSGSLPPHLSDPSHSPVS 168

Query: 175 ERMDRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVK 234
           ERMDRSGT    RRSSSISQRLRLT+ N G  D++SNASL+E+ET SRAQTPSGSTVG K
Sbjct: 169 ERMDRSGT-GSRRRSSSISQRLRLTDYNVGAFDAISNASLLEIETSSRAQTPSGSTVGAK 227

Query: 235 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 294
           TRLKDVSNALTTSKELLKIINR+WG EDRPSSSMSL+SALHAELERARLQVN LIQEQRS
Sbjct: 228 TRLKDVSNALTTSKELLKIINRVWGNEDRPSSSMSLISALHAELERARLQVNHLIQEQRS 287

Query: 295 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 354
           DQ+EI+YL+KCFAEEKA+WKNKE++VVEAAIESIAGELEVE+KLRRRFESLNKKLGKELA
Sbjct: 288 DQNEINYLLKCFAEEKASWKNKEQKVVEAAIESIAGELEVEKKLRRRFESLNKKLGKELA 347

Query: 355 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 414
           ETK SL+KAVK+L+ EKR RVV+EQVCDELARD+++DK+EVEELKRES     EVEKERE
Sbjct: 348 ETKTSLMKAVKELENEKRTRVVMEQVCDELARDVDEDKAEVEELKRESVKLCSEVEKERE 407

Query: 415 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 455
           M+Q+ADVLREER Q+KLSEAKY LEEKNAAVDKLRSQLEAF
Sbjct: 408 MMQLADVLREERVQMKLSEAKYLLEEKNAAVDKLRSQLEAF 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091941|ref|XP_002309409.1| predicted protein [Populus trichocarpa] gi|222855385|gb|EEE92932.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 340/467 (72%), Positives = 386/467 (82%), Gaps = 29/467 (6%)

Query: 1   MSRQQNQT--QNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ+     +   PGKIRKR CSSSASS+SSI+QNYRFKRAIL+GKRGG   S+TPVPT
Sbjct: 1   MPRQKGSATMEELLPGKIRKRVCSSSASSSSSIIQNYRFKRAILVGKRGG---SSTPVPT 57

Query: 59  WRLM-RTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMN 117
           W+LM + TPSS LRA++S  +      KAKQ Q            PVSARKLAATLWEMN
Sbjct: 58  WKLMGKRTPSSTLRALESSPK--SLNGKAKQQQ-----------APVSARKLAATLWEMN 104

Query: 118 EMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERM 177
           EMPSP+++E           I  E R R+  R R  R +HSGSLPPHLSDPSHSPVSER+
Sbjct: 105 EMPSPQMKE----------EIVEERRLRKEGRGRERRPVHSGSLPPHLSDPSHSPVSERI 154

Query: 178 DRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRL 237
           DRSGTGS HRR+SSISQ+LRL + + G  DSVSNASLME+ETRS+AQTPSGSTVGVK RL
Sbjct: 155 DRSGTGSCHRRTSSISQKLRLMDQSIGAFDSVSNASLMEIETRSQAQTPSGSTVGVKPRL 214

Query: 238 KDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQS 297
           KDVSNALTTSKELLKIINR+WG EDRPSSS+SL+SALHAELERARLQVN  IQEQ SDQ+
Sbjct: 215 KDVSNALTTSKELLKIINRVWGNEDRPSSSLSLISALHAELERARLQVNHFIQEQCSDQN 274

Query: 298 EISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK 357
           EI+YLMKCFAEEKAAWKNKE++VVEAAIESIAGEL+VE+KLRRRFESLNKKLGKELAETK
Sbjct: 275 EINYLMKCFAEEKAAWKNKEQKVVEAAIESIAGELDVEKKLRRRFESLNKKLGKELAETK 334

Query: 358 HSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQ 417
            SLLKAVK+L++EKRARVV+++VCDELARDI DDK+EVEELKRESA   EEVEKEREM+Q
Sbjct: 335 ASLLKAVKELESEKRARVVMQKVCDELARDIGDDKAEVEELKRESAKLCEEVEKEREMMQ 394

Query: 418 VADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           +ADVLREER  +KLSEAKYQLEEKNAAVDKL++QLEAF   ++ K K
Sbjct: 395 LADVLREERVHMKLSEAKYQLEEKNAAVDKLQNQLEAFLGTKRTKEK 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570881|ref|XP_003553612.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 315/455 (69%), Positives = 361/455 (79%), Gaps = 33/455 (7%)

Query: 1   MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           M  Q   T +  PGKIRKRGCSSSASS+SS++ NYRFKR IL+GKRGG   S+TPVPTW+
Sbjct: 1   MLSQNRSTMDMIPGKIRKRGCSSSASSSSSVLHNYRFKRTILVGKRGG---SSTPVPTWK 57

Query: 61  LMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMP 120
           LM +   S LRA+            A       Q  ++  Q PVSARKLAATLWEMNE+P
Sbjct: 58  LMSSR--SPLRAL------------ASPKYPPSQTANKSLQAPVSARKLAATLWEMNEIP 103

Query: 121 SPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDRS 180
           SP +R                ++   R RERV RS+ SGSLPPHLSDPSHSPVSERMDRS
Sbjct: 104 SPSVR----------------SKKELRTRERVPRSMRSGSLPPHLSDPSHSPVSERMDRS 147

Query: 181 GTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDV 240
           GTGS  +R+ SIS R R+TE + G LDS+SNASLME+ETRSRAQTP+ S VGVK RLKDV
Sbjct: 148 GTGSRQKRTPSISHRARITEHHVGPLDSLSNASLMEIETRSRAQTPASSAVGVKGRLKDV 207

Query: 241 SNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEIS 300
           SNALTTSKELLKIINRMWG EDRPSSSMSL+SALH ELERARLQVNQLIQEQRSDQ+EI+
Sbjct: 208 SNALTTSKELLKIINRMWGHEDRPSSSMSLISALHTELERARLQVNQLIQEQRSDQNEIN 267

Query: 301 YLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSL 360
           YLMKCFAEEKAAWKNKE+E+VE AIESIAGEL+VERKLRR+ ESLNKKLG+ELA+TK SL
Sbjct: 268 YLMKCFAEEKAAWKNKEQEIVEVAIESIAGELDVERKLRRQLESLNKKLGRELADTKASL 327

Query: 361 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD 420
           LK VK+L++EKRAR +IEQVCDELARD ++DKSE+E+ KR S    EEVEKE+E++Q+ D
Sbjct: 328 LKVVKELESEKRAREIIEQVCDELARDADEDKSEIEKQKRVSTKVCEEVEKEKEIMQLTD 387

Query: 421 VLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 455
            LREERAQ KLS+AKYQLEEKNAAVDKLR+QLE F
Sbjct: 388 RLREERAQKKLSDAKYQLEEKNAAVDKLRNQLEVF 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437432|ref|XP_004136496.1| PREDICTED: uncharacterized protein At5g41620-like [Cucumis sativus]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 305/461 (66%), Positives = 364/461 (78%), Gaps = 19/461 (4%)

Query: 4   QQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMR 63
           +QN      PGKIRKRGCSSSASS+SSI+ NYRFKRAIL+GKR G   S+TP+P+WRLM 
Sbjct: 3   RQNLAAELIPGKIRKRGCSSSASSSSSILHNYRFKRAILVGKRAG---SSTPLPSWRLMS 59

Query: 64  TTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPK 123
           +   S   A  S         ++  ++L      +  Q PVSARKLAATLWEMNE+PS +
Sbjct: 60  SRSRSPASAFRS--------TESPNYELYQCGSGRSKQAPVSARKLAATLWEMNELPSTR 111

Query: 124 LRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDRSGTG 183
           ++E+      DER+ R+E +ARE+     TRS+HSGSLPPHLSDPSHSPVSER DRSGTG
Sbjct: 112 VKESLA---LDERKSRKEMKAREK----TTRSVHSGSLPPHLSDPSHSPVSERGDRSGTG 164

Query: 184 SHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDVSNA 243
           S  RR+ S+SQRL+L +   GVLDSVSNASLME+E+RSRA TPS S VGVKTRLKDVSNA
Sbjct: 165 SRCRRTPSMSQRLKLADHGVGVLDSVSNASLMEIESRSRAPTPSASIVGVKTRLKDVSNA 224

Query: 244 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 303
           LTTSKELLKIINR+WG EDRPS+SMSL+SALHAE+ERARLQ+NQLIQEQR +QS+ISYLM
Sbjct: 225 LTTSKELLKIINRVWGHEDRPSTSMSLISALHAEMERARLQINQLIQEQRYEQSDISYLM 284

Query: 304 KCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKA 363
           +CFAEEK AWK+KE+EVVEAAIES+AGELEVERKLRRRFESLNKKLG+ELAETK SLLK 
Sbjct: 285 RCFAEEKEAWKSKEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGRELAETKSSLLKV 344

Query: 364 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLR 423
           VK+L++EKRAR ++EQVCD+LA D+ DDK E+ E +RESA   + V+KEREM ++A  L 
Sbjct: 345 VKELESEKRAREIMEQVCDDLANDVGDDKLELGERQRESAKLCDNVKKEREMKRLAAALH 404

Query: 424 EERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           EER     S+ KY LE+KN AVDKLR+QLEAF   ++ K K
Sbjct: 405 EERTHTDASD-KYDLEDKNVAVDKLRNQLEAFLGIKRAKEK 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829712|ref|XP_002882738.1| hypothetical protein ARALYDRAFT_478504 [Arabidopsis lyrata subsp. lyrata] gi|297328578|gb|EFH58997.1| hypothetical protein ARALYDRAFT_478504 [Arabidopsis lyrata subsp. lyrata]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 309/470 (65%), Positives = 361/470 (76%), Gaps = 27/470 (5%)

Query: 1   MSRQQNQTQNFFP-GKIRKRGCSSSASSTSSIV-QNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ    +N    GKIRKRGCSS  SSTSSI+ + YRFKRAI++GKRGG   S TPVPT
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGG---STTPVPT 57

Query: 59  WRLMRTTPS----SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           WRLM  +PS      L A    S  G    K              +  PVSARKLAATLW
Sbjct: 58  WRLMGRSPSPRASGALHAASPSSHCGSKTGKVS------------APAPVSARKLAATLW 105

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           EMNEMPSP++ E +         IR+  + R         S+HSGSLPPHLSDPSHSPVS
Sbjct: 106 EMNEMPSPRVVEAA------VPMIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVS 159

Query: 175 ERMDRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVK 234
           ERM+RSGTGS  RR+SS  Q+LRL + N G  D +SN S M++ETRSR +TP+GSTVGVK
Sbjct: 160 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPISNGSFMDIETRSRVETPTGSTVGVK 219

Query: 235 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 294
           TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct: 220 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 279

Query: 295 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 354
           + ++ISYLMK FAEEKAAWK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct: 280 ENNDISYLMKRFAEEKAAWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 339

Query: 355 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 414
           ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct: 340 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 399

Query: 415 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           M+Q+AD LREER Q+KLSEAK+QLEEKNA VDKLR+QL+ + + ++ K K
Sbjct: 400 MLQLADALREERVQMKLSEAKHQLEEKNATVDKLRNQLQTYLKAKRCKEK 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15724288|gb|AAL06537.1|AF412084_1 AT3g11590/F24K9_26 [Arabidopsis thaliana]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 308/470 (65%), Positives = 366/470 (77%), Gaps = 26/470 (5%)

Query: 1   MSRQQNQTQNFFP-GKIRKRGCSSSASSTSSIV-QNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ    +N    GKIRKRGCSS  SSTSSI+ + YRFKRAI++GKRGG   S TPVPT
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGG---STTPVPT 57

Query: 59  WRLMRTTPS----SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           WRLM  +PS      L A  S S + G    +K  ++        +  PVSARKLAATLW
Sbjct: 58  WRLMGRSPSPRASGALHAAASPSSHCG----SKTGKVS-------APAPVSARKLAATLW 106

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           EMNEMPSP++ E +         IR+  + R         S+HSGSLPPHLSDPSHSPVS
Sbjct: 107 EMNEMPSPRVVEEAAP------MIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVS 160

Query: 175 ERMDRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVK 234
           ERM+RSGTGS  RR+SS  Q+LRL + N G  D +++ S M++ETRSR +TP+GSTVGVK
Sbjct: 161 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVK 220

Query: 235 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 294
           TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct: 221 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 280

Query: 295 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 354
           + ++ISYLMK FAEEKA WK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct: 281 ENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 340

Query: 355 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 414
           ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct: 341 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 400

Query: 415 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           M+Q+AD LREER Q+KLSEAK+QLEEKNAAVDKLR+QL+ + + ++ K K
Sbjct: 401 MLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKTKRCKEK 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399293|ref|NP_566392.1| uncharacterized protein [Arabidopsis thaliana] gi|12322915|gb|AAG51453.1|AC008153_26 unknown protein; 103163-106072 [Arabidopsis thaliana] gi|25090217|gb|AAN72254.1| At3g11590/F24K9_26 [Arabidopsis thaliana] gi|332641549|gb|AEE75070.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 308/470 (65%), Positives = 366/470 (77%), Gaps = 26/470 (5%)

Query: 1   MSRQQNQTQNFFP-GKIRKRGCSSSASSTSSIV-QNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ    +N    GKIRKRGCSS  SSTSSI+ + YRFKRAI++GKRGG   S TPVPT
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGG---STTPVPT 57

Query: 59  WRLMRTTPS----SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           WRLM  +PS      L A  S S + G    +K  ++        +  PVSARKLAATLW
Sbjct: 58  WRLMGRSPSPRASGALHAAASPSSHCG----SKTGKVS-------APAPVSARKLAATLW 106

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           EMNEMPSP++ E +         IR+  + R         S+HSGSLPPHLSDPSHSPVS
Sbjct: 107 EMNEMPSPRVVEEAAP------MIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVS 160

Query: 175 ERMDRSGTGSHHRRSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVK 234
           ERM+RSGTGS  RR+SS  Q+LRL + N G  D +++ S M++ETRSR +TP+GSTVGVK
Sbjct: 161 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVK 220

Query: 235 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 294
           TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct: 221 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 280

Query: 295 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 354
           + ++ISYLMK FAEEKA WK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct: 281 ENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 340

Query: 355 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 414
           ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct: 341 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 400

Query: 415 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
           M+Q+AD LREER Q+KLSEAK+QLEEKNAAVDKLR+QL+ + + ++ K K
Sbjct: 401 MLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEK 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505402|ref|XP_003521480.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 310/448 (69%), Positives = 356/448 (79%), Gaps = 31/448 (6%)

Query: 8   TQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPS 67
           T +  PGKIRKRGCSSSASS+SS++ NYRFKR IL+GKRGG   S+TPVPTW+LM +   
Sbjct: 10  TMDMIPGKIRKRGCSSSASSSSSVLHNYRFKRTILVGKRGG---SSTPVPTWKLMSSR-- 64

Query: 68  SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRET 127
           S LRA+            A       Q  ++  Q PVSARKLAATLWEMNE+PSP     
Sbjct: 65  SPLRAL------------ASPKYPPSQTGNKPRQAPVSARKLAATLWEMNEIPSPS---- 108

Query: 128 SGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDRSGTGSHHR 187
                    R ++E R RER    V RS+ SGSLPPHLSDPSHSPVSER+DRSGTGS  +
Sbjct: 109 ------PSVRSKKELRTRER----VPRSMRSGSLPPHLSDPSHSPVSERLDRSGTGSRQK 158

Query: 188 RSSSISQRLRLTESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDVSNALTTS 247
           R+ SISQ  R+TE + G LDS+SN SLME+ETRSRAQTP+ S V VK RLKDVSNAL TS
Sbjct: 159 RTPSISQGARITEHHVGPLDSLSNVSLMEIETRSRAQTPASSAVAVKARLKDVSNALMTS 218

Query: 248 KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 307
           KELL+IINRMWG EDRPSSSMSL+SALH ELERARLQVNQLIQEQRSDQ+EI+YLMKCFA
Sbjct: 219 KELLRIINRMWGHEDRPSSSMSLISALHTELERARLQVNQLIQEQRSDQNEINYLMKCFA 278

Query: 308 EEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDL 367
           EEKAAWK KE E+VEAAIES+AGEL+VERKLRRR ESLNKKLG+ELA+TK SLLK VK+L
Sbjct: 279 EEKAAWKKKEEEIVEAAIESVAGELDVERKLRRRLESLNKKLGRELADTKTSLLKVVKEL 338

Query: 368 DTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERA 427
           ++EKRAR +IEQVCDELARD ++DKS++E+ KR S    EEVEKE+E++Q+ D LREERA
Sbjct: 339 ESEKRAREIIEQVCDELARDADEDKSDIEKQKRVSTKVCEEVEKEKEIMQLTDRLREERA 398

Query: 428 QIKLSEAKYQLEEKNAAVDKLRSQLEAF 455
           Q KLSEAKYQLEEKNAAVDKLR+QLEAF
Sbjct: 399 QKKLSEAKYQLEEKNAAVDKLRNQLEAF 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
TAIR|locus:2080792	622	AT3G11590 [Arabidopsis thalian	0.611	0.466	0.693	4.5e-124
TAIR|locus:2007996	725	AT1G50660 [Arabidopsis thalian	0.453	0.296	0.421	1.4e-44
TAIR|locus:2092319	673	AT3G20350 [Arabidopsis thalian	0.462	0.325	0.401	1.2e-40
TAIR|locus:2160477	623	AT5G41620 "AT5G41620" [Arabido	0.561	0.426	0.341	7.4e-39
TAIR|locus:2062877	468	AT2G46250 "AT2G46250" [Arabido	0.502	0.508	0.324	1.8e-36
TAIR|locus:2176387	481	AT5G22310 "AT5G22310" [Arabido	0.329	0.324	0.421	4.4e-35
TAIR|locus:2024568	593	AT1G64180 "AT1G64180" [Arabido	0.476	0.381	0.316	1.3e-30
TAIR|locus:2027402	247	AT1G11690 "AT1G11690" [Arabido	0.265	0.510	0.278	6.8e-10
TAIR|locus:2010876	273	BLT "AT1G64690" [Arabidopsis t	0.278	0.483	0.317	2.1e-08
UNIPROTKB|G4MS84	625	MGG_04501 "Uncharacterized pro	0.525	0.398	0.235	1e-07

TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
 Identities = 201/290 (69%), Positives = 240/290 (82%)

Query:   175 ERMDXXXXXXXXXXXXXXXXXXXXXESNGGVLDSVSNASLMEVETRSRAQTPSGSTVGVK 234
             ERM+                     + N G  D +++ S M++ETRSR +TP+GSTVGVK
Sbjct:   161 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVK 220

Query:   235 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 294
             TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct:   221 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 280

Query:   295 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 354
             + ++ISYLMK FAEEKA WK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct:   281 ENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 340

Query:   355 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 414
             ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct:   341 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 400

Query:   415 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
             M+Q+AD LREER Q+KLSEAK+QLEEKNAAVDKLR+QL+ + + ++ K K
Sbjct:   401 MLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEK 450

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 91/216 (42%), Positives = 151/216 (69%)

Query:   244 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 303
             L T +E+ +I + M  + D+  +++SLVS+L AELE A  ++  L  E+RS + ++   +
Sbjct:   213 LDTMEEVHQIYSNM-KRIDQQVNAVSLVSSLEAELEEAHARIEDLESEKRSHKKKLEQFL 271

Query:   304 KCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKA 363
             +  +EE+AAW+++E E V A I+ +  ++  E+K R+R E +N KL  ELA++K ++ + 
Sbjct:   272 RKVSEERAAWRSREHEKVRAIIDDMKTDMNREKKTRQRLEIVNHKLVNELADSKLAVKRY 331

Query:   364 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLR 423
             ++D + E++AR +IE+VCDELA++I +DK+E+E LKRES    EEV+ ER M+Q+A+V R
Sbjct:   332 MQDYEKERKARELIEEVCDELAKEIGEDKAEIEALKRESMSLREEVDDERRMLQMAEVWR 391

Query:   424 EERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ 459
             EER Q+KL +AK  LEE+ + ++KL   LE+F R++
Sbjct:   392 EERVQMKLIDAKVALEERYSQMNKLVGDLESFLRSR 427

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
 Identities = 90/224 (40%), Positives = 145/224 (64%)

Query:   244 LTTSKELLKII-NRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYL 302
             L T  ++ +I  N  W  +    + +SL S++  +L+ AR  +  L  E+RS + ++   
Sbjct:   190 LDTRDDVHQIYTNVKWNNQQ--VNDVSLASSIELKLQEARACIKDLESEKRSQKKKLEQF 247

Query:   303 MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 362
             +K  +EE+AAW+++E E V A I+ +  ++  E+K R+R E +N KL  ELA++K ++ +
Sbjct:   248 LKKVSEERAAWRSREHEKVRAIIDDMKADMNQEKKTRQRLEIVNSKLVNELADSKLAVKR 307

Query:   363 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVL 422
              + D   E++AR +IE+VCDELA++I +DK+E+E LK ES    EEV+ ER M+Q+A+V 
Sbjct:   308 YMHDYQQERKARELIEEVCDELAKEIEEDKAEIEALKSESMNLREEVDDERRMLQMAEVW 367

Query:   423 REERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF--SRNQKGKRK 464
             REER Q+KL +AK  LEEK + ++KL   +EAF  SRN  G ++
Sbjct:   368 REERVQMKLIDAKVTLEEKYSQMNKLVGDMEAFLSSRNTTGVKE 411

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 7.4e-39, Sum P(2) = 7.4e-39
 Identities = 94/275 (34%), Positives = 166/275 (60%)

Query:   200 ESNGGVLDSVSNASL---MEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINR 256
             + N   L  VS AS    +EV T ++A TPS S        ++    L TS ELLK++NR
Sbjct:   146 DRNNHALQPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNR 205

Query:   257 MWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK 316
             +W  E++  S++SL+ AL  E+  +R+++ +L++ Q++D+ E+  ++K  AEEK   KNK
Sbjct:   206 IWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNK 265

Query:   317 EREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVV 376
             E E + +A++S+   LE ERKLR+R ESL++K+ +EL+E K SL   VK+L+   ++  +
Sbjct:   266 EVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKM 325

Query:   377 IEQVCDELARDINDDKSEVEELKRESAIALEEVEK---EREMIQVADVLREERAQIKLSE 433
             +E +CDE A+ I   + E+  LK+++ +  +   +   ++ ++ +A+   +ER Q++L E
Sbjct:   326 MELLCDEFAKGIKSYEEEIHGLKKKN-LDKDWAGRGGGDQLVLHIAESWLDERMQMRL-E 383

Query:   434 AKYQLEEKNAAV-DKLRSQLEAFSRNQKGKRKRTQ 467
                 L  KN +V DKL  ++E F + ++ +  R +
Sbjct:   384 GGDTLNGKNRSVLDKLEVEIETFLQEKRNEIPRNR 418

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
 Identities = 87/268 (32%), Positives = 153/268 (57%)

Query:   202 NGGVLDSVSNASLMEVETRSRA--QTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWG 259
             NG +L  +S AS     +  +   + P+ S  G  + +K  S  L +S +LLK++NR+W 
Sbjct:   116 NGDLLQPISPASCSSSSSSLQVVVRKPAFSQTG-SSAVKSASYGLGSSTKLLKVLNRIWS 174

Query:   260 QEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE 319
              E++ +++MSLV AL  EL+  R ++ ++  +QR   S+           +   K KE E
Sbjct:   175 LEEQNTANMSLVRALKMELDECRAEIKEV--QQRKKLSD-----------RPLRKKKEEE 221

Query:   320 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 379
              V+    SI  EL+ ERK+R+  E+L++KL +EL E KH L KA+KDL+ E + RVV+E 
Sbjct:   222 EVKDVFRSIKRELDDERKVRKESETLHRKLTRELCEAKHCLSKALKDLEKETQERVVVEN 281

Query:   380 VCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLE 439
             +CDE A+ + D + +V  + ++S ++      ++ ++Q+A+V  ++R Q+KL E     +
Sbjct:   282 LCDEFAKAVKDYEDKVRRIGKKSPVS------DKVIVQIAEVWSDQRLQMKLEE-----D 330

Query:   440 EKNAAVDKLRSQLEAFSRNQKGKRKRTQ 467
             +K      LR++ ++ S++ KG   R +
Sbjct:   331 DKTFL---LRAKEKSRSQSSKGSGLRAK 355

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.4e-35, Sum P(2) = 4.4e-35
 Identities = 75/178 (42%), Positives = 111/178 (62%)

Query:   285 VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFES 344
             ++ L+ E    +S + +LM    EE+   + K R      IES+  E  VERKLRRR E 
Sbjct:   214 ISALLCELDRARSSLKHLMSELDEEE---EEKRR-----LIESLQEEAMVERKLRRRTEK 265

Query:   345 LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404
             +N++LG+EL E K +  K  +++  EKRA+ V+E+VCDEL + I DDK            
Sbjct:   266 MNRRLGRELTEAKETERKMKEEMKREKRAKDVLEEVCDELTKGIGDDK------------ 313

Query:   405 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGK 462
               +E+EKEREM+ +ADVLREER Q+KL+EAK++ E+K AAV++L+ +L      ++GK
Sbjct:   314 --KEMEKEREMMHIADVLREERVQMKLTEAKFEFEDKYAAVERLKKELRRVLDGEEGK 369

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
 Identities = 74/234 (31%), Positives = 139/234 (59%)

Query:   234 KTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 293
             + R  + +N + TS ELLK++NR+W  E++ S+++SL+ +L  EL  +R ++  L++ ++
Sbjct:   175 RRRAGEPNNNIKTSTELLKVLNRIWILEEQHSANISLIKSLKTELAHSRARIKDLLRCKQ 234

Query:   294 SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353
             +D+ ++   +K  AEEK +   KE + + +A++S    LE ERKLR+R ESL +KL +EL
Sbjct:   235 ADKRDMDDFVKQLAEEKLSKGTKEHDRLSSAVQS----LEDERKLRKRSESLYRKLAQEL 290

Query:   354 AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKER 413
             +E K +L   VK+++    ++ ++E++CDE A+ I   + E+  LK++     +  +++ 
Sbjct:   291 SEVKSTLSNCVKEMERGTESKKILERLCDEFAKGIKSYEREIHGLKQKLDKNWKGWDEQD 350

Query:   414 EMIQ-VADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRT 466
              MI  +A+   +ER Q     A  +LE +      L++   A S N+  + +RT
Sbjct:   351 HMILCIAESWLDERIQSGNGSALEKLEFEIETF--LKTNQNADS-NEIARNRRT 401

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2027402 AT1G11690 "AT1G11690" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 39/140 (27%), Positives = 81/140 (57%)

Query:   314 KNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 373
             +N++ E     ++ +  +L  ER+ ++R ++ N +L K++ + + S+ +  ++ DT    
Sbjct:    71 RNEKEETTNPFVDYLKEKLSKEREEKKRVKAENSRLKKKILDMESSVNRLRRERDT---- 126

Query:   374 RVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSE 433
                +E+VC+EL        + ++ELK  +    +E E+ER+M+Q+A++ REER ++K  +
Sbjct:   127 ---MEKVCEELV-------TRIDELKVNTRRVWDETEEERQMLQMAEMWREERVRVKFMD 176

Query:   434 AKYQLEEKNAAVDKLRSQLE 453
             AK  L+EK   ++    +LE
Sbjct:   177 AKLALQEKYEEMNLFVVELE 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010876 BLT "AT1G64690" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 46/145 (31%), Positives = 82/145 (56%)

Query:   321 VEAAIESIAGELEVE-RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 379
             ++  +ES  G+ + E ++L+   +   K   +  AE    + K  KD++ E+ AR   E 
Sbjct:    69 IKVFMESELGKAQDEIKELKAELDYERK--ARRRAELM--IKKLAKDVEEERMAREAEEM 124

Query:   380 VCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLE 439
                 L ++++ +KSE+  +KR+       +E+ER+M ++A+VLREER Q+KL +A+  LE
Sbjct:   125 QNKRLFKELSSEKSEMVRMKRD-------LEEERQMHRLAEVLREERVQMKLMDARLFLE 177

Query:   440 EKNAAVDKLRSQLEAFSRNQKGKRK 464
             EK + +++   Q E   RN+  K K
Sbjct:   178 EKLSELEEANRQGER-ERNRMMKPK 201

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0010090 "trichome morphogenesis" evidence=IMP

UNIPROTKB|G4MS84 MGG_04501 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 65/276 (23%), Positives = 125/276 (45%)

Query:   207 DSVSNASLMEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRP-S 265
             D     S    E RS+    +  +   + +LK  +  +   K  L+ +N +     +  S
Sbjct:    66 DRYDKLSKQHTEARSKLVASTRKSDEQEKKLKAQAREILNLKAELQSLNGVSQDSTKMLS 125

Query:   266 SSMSL---VSALHAELERARLQV---NQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE 319
               ++L   ++ L  ELE  R Q+   ++++ E+ + + +++ L    A EK A    +R 
Sbjct:   126 EKLALTRELANLKPELEHLRSQLANHSEMLAEKLALERQVNTLEVELANEKRA---AQRA 182

Query:   320 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 379
             +     +    E+EVE +LR++ + L KKL  E    K +  +A +D D E      + Q
Sbjct:   183 IQRQETK----EVEVEEELRQQIQDLEKKLANE----KRAAQRAKQDADKETELEDRLRQ 234

Query:   380 VCDELARDINDDKSEVEELKRESAIALEEVEKEREMI-----QVADVLREERAQIKLSEA 434
               DE    +   ++E  + +RE    L E+  + E I     ++   L+E R ++K   A
Sbjct:   235 QADEFEAQLKTQQTEAAKARRELERQLAELTAQNEFIDERFTELKAKLKETRQELKSCRA 294

Query:   435 KYQLEEKNAAVDKLRSQ---LEAFSRNQKGKRKRTQ 467
             + Q E K AA +++       +A  + Q G+++R +
Sbjct:   295 ELQ-EAKQAAANRVAKAPVAAKAKGKAQPGQKRRAE 329

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021553001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (609 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	474
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 19/232 (8%)

Query: 234 KTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 293
           +  L ++   L   +E L+ + +   +  R       +SAL  +L R   +V QL +   
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSR------QISALRKDLARLEAEVEQLEERIA 750

Query: 294 SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353
               E++ L              E E +E  +E    EL          E+  ++L +EL
Sbjct: 751 QLSKELTEL------------EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 354 AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKER 413
              + +L +   +L         + +  + L R I   +  +E+L+ +     E++E   
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 414 EMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 465
             I+  + L EE  + +L     +      A+  LRS+LE  S   +    +
Sbjct: 859 AEIEELEELIEE-LESELEALLNERASLEEALALLRSELEELSEELRELESK 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 8/191 (4%)

Query: 276 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 335
            EL R   ++ +L +E    + EI  L     E +   +  + E++E   E    E E+ 
Sbjct: 246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEIS 305

Query: 336 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 395
             LR R E L  +L +EL E    L + ++ L  E   R  + +   EL + + + +   
Sbjct: 306 L-LRERLEELENEL-EELEERLEELKEKIEALKEELEERETLLE---ELEQLLAELEEAK 360

Query: 396 EELKRESAIALEEVEKEREMIQV-ADVLREERAQI--KLSEAKYQLEEKNAAVDKLRSQL 452
           EEL+ + +  LEE+E+  E ++     L  E A+I  +L E K ++E     +++L  +L
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 453 EAFSRNQKGKR 463
           E      K   
Sbjct: 421 EDLKEELKELE 431

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 273 ALHAELERARLQVNQLIQEQRSDQSEISYL---MKCFAEEKAAWKNKEREVVEAAIESIA 329
            L  ELE A  +++ L +E  S +     L   ++   EE    + K  E+ E  +E + 
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL-EEELEELE 855

Query: 330 GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 389
            ELE  ++     E+  ++L  EL E +    +  ++L   +     +++  ++L   + 
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 390 DDKSEVEELKRESAIALEEVEKEREMIQVADVLRE-ERAQIKLSE-------AKYQLEEK 441
           + ++++E L+ E     EE+E+E E     ++ RE ER + ++         A  + EE 
Sbjct: 916 ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEV 975

Query: 442 NAAVDKLRSQLEAFSR 457
               ++L+SQ E    
Sbjct: 976 EERYEELKSQREDLEE 991

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 20/182 (10%)

Query: 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332
            L  ELE  + ++ +  +E     +E+  L     EEK      E   +E  IE +  EL
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQEL-----EEKLEELRLEVSELEEEIEELQKEL 290

Query: 333 EVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDK 392
                           L  E++  +       + L   +R    +E   +EL   +++  
Sbjct: 291 YA--------------LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336

Query: 393 SEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQL 452
            E+ EL+ +     EE+E     ++  +   EE    +L E + QLE   + V +L  Q+
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELES-RLEELEEQLETLRSKVAQLELQI 395

Query: 453 EA 454
            +
Sbjct: 396 AS 397

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 51/247 (20%), Positives = 111/247 (44%), Gaps = 18/247 (7%)

Query: 235 TRLKDVSNALTTSKELLKIINRMWGQ-EDRPSSSMSLVSALHAELERARLQVNQLIQEQR 293
             LK + N L + ++LL+ + R   + E +       ++AL  ELE+ + ++ +L +E  
Sbjct: 688 EELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747

Query: 294 SDQSEISYLMKC--FAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE---SLNKK 348
             + E+  L +     EE+     +    ++  IE +  + +  ++     E      ++
Sbjct: 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807

Query: 349 LGKELAETKHSLLKAVKDLDTE----KRARVVIEQVCDELARDINDDKSEVEELKRESAI 404
               L     SL +  + L+ E    +     +E+  DEL  ++ + + E+EELK E   
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE--- 864

Query: 405 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 464
            LEE+E E+E  ++ D L+E   + +  E + +L E  + + +L+ ++E      +    
Sbjct: 865 -LEELEAEKE--ELEDELKELEEEKE--ELEEELRELESELAELKEEIEKLRERLEELEA 919

Query: 465 RTQFCKS 471
           + +  + 
Sbjct: 920 KLERLEV 926

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/228 (18%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 249 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 308
           EL + +     + +  ++ +  +     EL     ++ + I+E + +   ++  +    +
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 309 EKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD 368
           +K   + +   +     E  A   E+E KL    E L  +L ++L E K  L     +L+
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELE 361

Query: 369 TEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA---LEEVEKEREMI--------Q 417
             +     +E   +EL   +   +S+V +L+ + A     +E +E   E +        Q
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 418 VADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 465
             + L ++  + +L E + +LEE    +++L+ +LE      +  R+ 
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 277 ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREV------VEAAIESIAG 330
            LE    ++ +  +     ++ +  +     E     + + RE+      +E  IE +  
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEE 295

Query: 331 ELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 390
                 +L    E L   L +EL E    L    + L+  +     +E   +ELA + N+
Sbjct: 296 LEREIEELEEELEGLRALL-EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354

Query: 391 DKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRS 450
               +EE  +E    LEE+EKE E      + R ++ +  + E K +L E +AA+++++ 
Sbjct: 355 LAKLLEERLKELEERLEELEKELE----KALERLKQLEEAIQELKEELAELSAALEEIQE 410

Query: 451 QLEA 454
           +LE 
Sbjct: 411 ELEE 414

Length = 908

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 27/178 (15%)

Query: 276 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-EV 334
           A+++ A  +  ++++E + +   I    +   E K        E  E  +     EL ++
Sbjct: 31  AKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEEIHKLRNEF-EKELRERRNELQKL 87

Query: 335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSE 394
           E++L ++ E+L++KL + L + +  L K  K+L+ +++              ++   + E
Sbjct: 88  EKRLLQKEENLDRKL-ELLEKREEELEKKEKELEQKQQ--------------ELEKKEEE 132

Query: 395 VEELKRESAIALEEV-----EKEREMI--QVADVLREERAQ-IKLSEAKYQLEEKNAA 444
           +EEL  E    LE +     E+ +E++  +V +  R E A  IK  E + + E    A
Sbjct: 133 LEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA 190

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 43/229 (18%)

Query: 260 QEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ----------------------- 296
            E+R       +S    ++     ++ QL QE+   +                       
Sbjct: 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759

Query: 297 -----SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE----SLNK 347
                + I  L +   + + A  + E  +  + I  I  EL    +   R E     + +
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819

Query: 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA---I 404
           KL +   E K  L K +++L  ++     +++    + ++I +   + EEL+ E      
Sbjct: 820 KLNRLTLE-KEYLEKEIQELQEQRID---LKEQIKSIEKEIENLNGKKEELEEELEELEA 875

Query: 405 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLE 453
           AL ++E     ++  +    +  + +L E + ++EE  A ++K R +L 
Sbjct: 876 ALRDLESRLGDLK-KER---DELEAQLRELERKIEELEAQIEKKRKRLS 920

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 29/142 (20%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 276 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 335
            ELE+   ++ +  +E     S +   ++   E   A + +  E+ EA +  I  ELE  
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELE---ELFEALREELAEL-EAELAEIRNELEEL 402

Query: 336 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 395
           ++     E   ++L + L + K  L +   +L+  +     + +  +EL   + + +  +
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462

Query: 396 EELKRESAIALEEVEKEREMIQ 417
           +EL+RE A   EE+++  + + 
Sbjct: 463 KELERELAELQEELQRLEKELS 484

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	474
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.5
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.08
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.03
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.55
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.4
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.39
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.35
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.34
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.33
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.3
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.04
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.02
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.74
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.66
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.12
PRK02224	880	chromosome segregation protein; Provisional	95.1
PHA02562	562	46 endonuclease subunit; Provisional	94.84
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.64
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.53
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.4
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.19
PRK02224	880	chromosome segregation protein; Provisional	93.99
KOG0933	1174	consensus Structural maintenance of chromosome pro	93.87
PRK11637	428	AmiB activator; Provisional	93.13
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.65
PRK03918	880	chromosome segregation protein; Provisional	92.0
PRK09039	343	hypothetical protein; Validated	91.94
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	91.4
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.28
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	91.05
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	91.02
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	90.93
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	90.92
PF05615	139	THOC7: Tho complex subunit 7; InterPro: IPR008501	90.87
PF09727	192	CortBP2: Cortactin-binding protein-2; InterPro: IP	90.43
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	89.76
KOG0996	1293	consensus Structural maintenance of chromosome pro	88.9
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.44
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	88.13
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	87.87
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.74
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	87.42
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	87.21
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.04
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.0
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	86.51
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.23
PHA02562	562	46 endonuclease subunit; Provisional	85.92
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	85.76
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	85.7
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	84.77
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	84.15
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.56
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.26
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.67
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	82.6
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.23
KOG0971	1243	consensus Microtubule-associated protein dynactin	82.08
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	81.69
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	81.22
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	81.22
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	81.19
COG2433	652	Uncharacterized conserved protein [Function unknow	80.96
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	80.63
PF00901	508	Orbi_VP5: Orbivirus outer capsid protein VP5; Inte	80.33

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.50  E-value=0.028  Score=62.88  Aligned_cols=74  Identities=28%  Similarity=0.338  Sum_probs=61.8

Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHh
Q 011939          260 QEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLR  339 (474)
Q Consensus       260 leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~R  339 (474)
                      |....-..=+-|..|+.|-|+.+.++.+|.+.++.++..|..|=|+|+||+..+-            .+-.+|..|||.|
T Consensus       451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r  518 (697)
T PF09726_consen  451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKAR  518 (697)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence            3443334456799999999999999999999999999999999999999986543            3667899999999


Q ss_pred             hhHHHH
Q 011939          340 RRFESL  345 (474)
Q Consensus       340 rr~E~l  345 (474)
                      +..|.-
T Consensus       519 ~~ee~~  524 (697)
T PF09726_consen  519 KEEEEK  524 (697)
T ss_pred             hHHHHh
Confidence            998763

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.08  E-value=0.14  Score=59.12  Aligned_cols=208  Identities=25%  Similarity=0.345  Sum_probs=143.0

Q ss_pred             ccccccccccccchhch-------HHHHHHHHhhcCCCCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 011939          231 VGVKTRLKDVSNALTTS-------KELLKIINRMWGQEDR----PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEI  299 (474)
Q Consensus       231 ~~~k~r~~e~~~~L~TS-------~ELlkVlnriw~leeq----~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~ei  299 (474)
                      .+.+..++|.---|.|-       +.=|+-|.++.-..+|    .+--|.-+.-|+-||.+||...++++.-+..++.+|
T Consensus       227 ~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~em  306 (1243)
T KOG0971|consen  227 EELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEM  306 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666655554       2233445555433332    334456677899999999999999998888887777


Q ss_pred             HHH---------HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHH---------------HhhhHHHHhHHHHHHH--
Q 011939          300 SYL---------MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERK---------------LRRRFESLNKKLGKEL--  353 (474)
Q Consensus       300 e~l---------~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK---------------~Rrr~E~lN~KL~~EL--  353 (474)
                      +++         =|.+||||+.-=--|-+-.+..|++|-.+||-=|-               --+++|.-|.||-.-|  
T Consensus       307 ad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVr  386 (1243)
T KOG0971|consen  307 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVR  386 (1243)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            654         58899999988888888888888888877775433               2478999999998766  


Q ss_pred             -----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhh
Q 011939          354 -----AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQ  428 (474)
Q Consensus       354 -----aE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQ  428 (474)
                           +..|.-..++.+++|+-+-.-.-|+.+-.-|-++|...+..|-.|+..-+...   --|-.+-|           
T Consensus       387 LRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl---GAE~MV~q-----------  452 (1243)
T KOG0971|consen  387 LRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL---GAEEMVEQ-----------  452 (1243)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHH-----------
Confidence                 45566677888889888888888888888888888888888888886644332   22333333           


Q ss_pred             hhhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939          429 IKLSEAKYQLEEKNAAVDKLRSQLEA  454 (474)
Q Consensus       429 MKL~eAk~~lEeK~s~ldkL~~elE~  454 (474)
                        |+|-++.||||.-.|+.-++|||+
T Consensus       453 --LtdknlnlEekVklLeetv~dlEa  476 (1243)
T KOG0971|consen  453 --LTDKNLNLEEKVKLLEETVGDLEA  476 (1243)
T ss_pred             --HHhhccCHHHHHHHHHHHHHHHHH
Confidence              444445555555555555555544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.03  E-value=0.35  Score=53.24  Aligned_cols=116  Identities=19%  Similarity=0.321  Sum_probs=65.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhhcc----cHHHHHHHHHHhHHHHHHH-HHhHHH
Q 011939          342 FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIE-QVCDELARDIND----DKSEVEELKRESAIALEEV-EKEREM  415 (474)
Q Consensus       342 ~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE-~vCDELAkeI~e----dkaEVe~LKres~k~reE~-EeER~M  415 (474)
                      ++.-+-.|++||+++...=.+.+.||-.-|-.-.=|. .+||. +-.+.+    ...|...|.......++++ +-.+++
T Consensus       302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~-~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el  380 (546)
T PF07888_consen  302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA-SLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL  380 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4455667888888888777777777776664222222 22322 223333    3334444444444444444 335556


Q ss_pred             HHHhHhhhHHhhh----------------hhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939          416 IQVADVLREERAQ----------------IKLSEAKYQLEEKNAAVDKLRSQLEAFSRN  458 (474)
Q Consensus       416 LqmAEvWREERVQ----------------MKL~eAk~~lEeK~s~ldkL~~elE~FL~s  458 (474)
                      .++++...|||.+                +.|+|++-.|.|+.+.+-.++-|=|-+...
T Consensus       381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E  439 (546)
T PF07888_consen  381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE  439 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666653                567777777777777666666655555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=96.55  E-value=0.27  Score=58.09  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhHHHHHHhhhHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 011939          322 EAAIESIAGELEVERKLRRRFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL  398 (474)
Q Consensus       322 ~aai~slk~ELe~ERK~Rrr~E~lN~KL---~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~L  398 (474)
                      ...+..+..+++.-.......+.--..|   -.++.+.+..+...++....-...-+-+...+.++...|.+.+.+++.+
T Consensus       835 ~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~  914 (1311)
T TIGR00606       835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL  914 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3334444444444344444444444444   4567777777777776665555555556666777777777777777777


Q ss_pred             HHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939          399 KRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK  460 (474)
Q Consensus       399 Kres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~  460 (474)
                      ..+..++..+.++-+.-...    .++..|.++    ..|......+..|..+|+.|+....
T Consensus       915 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~i~~y~~~~~  968 (1311)
T TIGR00606       915 ETFLEKDQQEKEELISSKET----SNKKAQDKV----NDIKEKVKNIHGYMKDIENKIQDGK  968 (1311)
T ss_pred             hHHHHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77666665554443322222    234555555    3455666788888888998887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.40  E-value=0.39  Score=47.18  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=77.0

Q ss_pred             HhhcCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH--HHHhhhhhHHHHHHHHHHHHHH
Q 011939          255 NRMWGQEDRPSSSMS-LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE--KAAWKNKEREVVEAAIESIAGE  331 (474)
Q Consensus       255 nriw~leeq~~s~~S-lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE--K~awKsKE~eki~aai~slk~E  331 (474)
                      ..|+.+.+.....++ +-..+..||..+|..|..+..|+....-+++.+...+.+=  |.......+..+..-|..++.+
T Consensus        32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~  111 (312)
T PF00038_consen   32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD  111 (312)
T ss_dssp             HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            345555665443334 6677888888888888888877766666666555444442  2222245577778888999999


Q ss_pred             hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011939          332 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK  371 (474)
Q Consensus       332 Le~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ER  371 (474)
                      |+.+-..|-.+|.--.-|-.||.-.+....+-+.+|...-
T Consensus       112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~  151 (312)
T PF00038_consen  112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI  151 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            9999999999998888888888887777766666665433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.39  E-value=0.44  Score=52.46  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh----------------HHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF----------------AEEKAAWKNKEREVVEAAIESIAGELEV  334 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql----------------aEEK~awKsKE~eki~aai~slk~ELe~  334 (474)
                      |..|+.|++.++....+.+++....+.+++..+..+                -||....=.+|-.+|...|..++.+|++
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~  194 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD  194 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            445555555555555555555555555544332222                2333444556889999999999999999


Q ss_pred             HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 011939          335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA---RVVIEQVCDELARDINDDKSEVEELKRESAIAL  406 (474)
Q Consensus       335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa---RellE~vCDELAkeI~edkaEVe~LKres~k~r  406 (474)
                      |.-+|..++.-..=|-.||.-.+...++.+.|+-.-...   -..=+..-+||+.-|.|.+++-+...+...+.+
T Consensus       195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di  269 (546)
T KOG0977|consen  195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI  269 (546)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999888887766554322111   123466778899999988888887766555433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.35  E-value=1.2  Score=43.87  Aligned_cols=76  Identities=28%  Similarity=0.358  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhH
Q 011939          269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRR-FESLNK  347 (474)
Q Consensus       269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr-~E~lN~  347 (474)
                      .-+..|+.|++..+.+..+..+.+.....++..|-+.+.++-++     +..+...|+.+++||++-++.... ++.|-.
T Consensus        75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~heeEi~~L~~  149 (312)
T PF00038_consen   75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNHEEEIEELRE  149 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            44777888888888888888888888888888888888888766     556677789999999887765544 444444


Q ss_pred             HH
Q 011939          348 KL  349 (474)
Q Consensus       348 KL  349 (474)
                      ++
T Consensus       150 ~~  151 (312)
T PF00038_consen  150 QI  151 (312)
T ss_dssp             T-
T ss_pred             cc
Confidence            44

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.34  E-value=1.7  Score=49.07  Aligned_cols=12  Identities=8%  Similarity=0.113  Sum_probs=4.5

Q ss_pred             cccccccchhch
Q 011939          236 RLKDVSNALTTS  247 (474)
Q Consensus       236 r~~e~~~~L~TS  247 (474)
                      ++.++...|.-.
T Consensus       171 ~~~~~~~~l~~~  182 (1164)
T TIGR02169       171 KKEKALEELEEV  182 (1164)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.33  E-value=2.1  Score=48.38  Aligned_cols=10  Identities=20%  Similarity=0.219  Sum_probs=4.2

Q ss_pred             CcccHHHHHH
Q 011939          102 QPVSARKLAA  111 (474)
Q Consensus       102 ~~vSARKLaA  111 (474)
                      .+||.+.+..
T Consensus       115 ~~~~~~~~~~  124 (1164)
T TIGR02169       115 QRVRLSEIHD  124 (1164)
T ss_pred             ccccHHHHHH
Confidence            3445444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.30  E-value=0.74  Score=51.87  Aligned_cols=71  Identities=21%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------hhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 011939          270 LVSALHAELERARLQVNQLIQE--------------QRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE  335 (474)
Q Consensus       270 lvsaLk~EL~~AR~rI~eL~~E--------------~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~E  335 (474)
                      =|+.|++||..+|..=.||-..              -+..+++.|.|-.++.+=.     +.+++=+..++.|-..|.+|
T Consensus       426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            3777888888877665555544              2223344444444444332     22333456788888999999


Q ss_pred             HHHhhhHHHH
Q 011939          336 RKLRRRFESL  345 (474)
Q Consensus       336 RK~Rrr~E~l  345 (474)
                      ++.|..+|.-
T Consensus       501 ~~~R~~lEkQ  510 (697)
T PF09726_consen  501 RRQRASLEKQ  510 (697)
T ss_pred             HHHHHHHHHH
Confidence            9999988853

; GO: 0016021 integral to membrane

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.04  E-value=1.6  Score=51.88  Aligned_cols=178  Identities=16%  Similarity=0.237  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHhHHHHH--Hhhhhh-HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHH
Q 011939          281 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKA--AWKNKE-REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK  357 (474)
Q Consensus       281 AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~--awKsKE-~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~K  357 (474)
                      .++.|-+...+......++...-.++.-+..  +-|... +..|+.....++...+..++-++.+|.-+.++-..|.-+.
T Consensus       332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~  411 (1293)
T KOG0996|consen  332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT  411 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666666665552222  222333 3347777888888899999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHH-HhHhhhHH--hhhhhhhHh
Q 011939          358 HSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQ-VADVLREE--RAQIKLSEA  434 (474)
Q Consensus       358 ss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLq-mAEvWREE--RVQMKL~eA  434 (474)
                      +-++++.+++|+.++...-+|..-...-..|.+...|++.|.....+...++++...-|. =++..++|  ..|-.|+..
T Consensus       412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~  491 (1293)
T KOG0996|consen  412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL  491 (1293)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888888888888887776666666666554442 34444444  345556666


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhh
Q 011939          435 KYQLEEKNAAVDKLRSQLEAFSRN  458 (474)
Q Consensus       435 k~~lEeK~s~ldkL~~elE~FL~s  458 (474)
                      ...+-+.-+.++-...||+-.+..
T Consensus       492 ~~~~n~~~~e~~vaesel~~L~~~  515 (1293)
T KOG0996|consen  492 LKQVNEARSELDVAESELDILLSR  515 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666655543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.02  E-value=1.4  Score=54.79  Aligned_cols=89  Identities=26%  Similarity=0.382  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 011939          272 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL  349 (474)
Q Consensus       272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL  349 (474)
                      +.|..|+..-+.+|..|.+|++.-...+.+|.-.+  .+|++.--+|...++...|+++...|+.|++.|..+|...+||
T Consensus       967 ~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen  967 KNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKL 1046 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444433  4567777788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 011939          350 GKELAETKHSL  360 (474)
Q Consensus       350 ~~ELaE~Kss~  360 (474)
                      .-||...+.+.
T Consensus      1047 e~el~~~~e~~ 1057 (1930)
T KOG0161|consen 1047 EGELKDLQESI 1057 (1930)
T ss_pred             HHHHHHhhhHH
Confidence            98885554443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.74  E-value=3.6  Score=49.27  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939          273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE  352 (474)
Q Consensus       273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E  352 (474)
                      -+-.||+.+..+++-.+.|.+..+..+-.---+..+|+++-...+..++.+-|..+++||++..+-..++-.-+.|+..+
T Consensus       465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~  544 (1317)
T KOG0612|consen  465 EMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSL  544 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            34456776666665555555541111111111233445555556678899999999999999999999998889999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939          353 LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN  389 (474)
Q Consensus       353 LaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~  389 (474)
                      ..++..+..-+.-+.+.+.+-+...++.|..+-.+..
T Consensus       545 rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e  581 (1317)
T KOG0612|consen  545 RKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE  581 (1317)
T ss_pred             HHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence            8888888888888999999999999999998766544

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.66  E-value=1.7  Score=50.99  Aligned_cols=203  Identities=18%  Similarity=0.251  Sum_probs=136.5

Q ss_pred             ccccccchhch-HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh
Q 011939          237 LKDVSNALTTS-KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN  315 (474)
Q Consensus       237 ~~e~~~~L~TS-~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs  315 (474)
                      +.++...|.+. -+|--+..++= ..+ +.-...-+..|..++..++.+|++...-.+....+|.-+=+.+.+.+..+.+
T Consensus       710 f~~l~~ql~l~~~~l~l~~~r~~-~~e-~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~  787 (1174)
T KOG0933|consen  710 FRDLKQQLELKLHELALLEKRLE-QNE-FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER  787 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Confidence            34444444444 34444555552 111 2244566888889999999999998888877777787777777777766555


Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 011939          316 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV  395 (474)
Q Consensus       316 KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEV  395 (474)
                      +-.| ...-|+..+..++..++-=++.|..-.+|.-|..+.+.++...-+.|+       -++.-|+.|..+|++.++.|
T Consensus       788 rlkd-l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv  859 (1174)
T KOG0933|consen  788 RLKD-LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKV  859 (1174)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            4333 345677888888888888888888888998888887776666555554       46777888999999999999


Q ss_pred             HHHHHHhHHHHHHHHHhHHHHHHhH------hhhHHhhhhhhhHhhhhhhhhhHHHHHHH
Q 011939          396 EELKRESAIALEEVEKEREMIQVAD------VLREERAQIKLSEAKYQLEEKNAAVDKLR  449 (474)
Q Consensus       396 e~LKres~k~reE~EeER~MLqmAE------vWREERVQMKL~eAk~~lEeK~s~ldkL~  449 (474)
                      .....+..++..|+.++..++.=-+      +=..|-.+-+..+-++...++.-.++++.
T Consensus       860 ~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~  919 (1174)
T KOG0933|consen  860 DKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLE  919 (1174)
T ss_pred             HhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhh
Confidence            8888888888888877666553222      11233444444455555555555555544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.12  E-value=7  Score=46.14  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=19.3

Q ss_pred             HhHhhhH-HhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939          418 VADVLRE-ERAQIKLSEAKYQLEEKNAAVDKLRSQLE  453 (474)
Q Consensus       418 mAEvWRE-ERVQMKL~eAk~~lEeK~s~ldkL~~elE  453 (474)
                      +.+.|++ ...|.++.++...+.+....++.|....+
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  498 (1163)
T COG1196         462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQR  498 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555554 34555555555555555555555555443

>PRK02224 chromosome segregation protein; Provisional

Probab=95.10  E-value=5.2  Score=44.92  Aligned_cols=32  Identities=9%  Similarity=0.169  Sum_probs=15.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhhcc--CCcccchhhc
Q 011939          440 EKNAAVDKLRSQLEAFSRNQKG--KRKRTQFCKS  471 (474)
Q Consensus       440 eK~s~ldkL~~elE~FL~sk~~--~~~~~~~~~~  471 (474)
                      ++...+......++.+|..-..  .....|.|..
T Consensus       426 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r  459 (880)
T PRK02224        426 EREAELEATLRTARERVEEAEALLEAGKCPECGQ  459 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            4444555555555666655431  1222566653

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.84  E-value=5  Score=42.38  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHhhhcccHHHHHHHHH
Q 011939          353 LAETKHSLLKAVKDLDTEKRARVVIEQ--VCDELARDINDDKSEVEELKR  400 (474)
Q Consensus       353 LaE~Kss~~~alkelE~ERKaRellE~--vCDELAkeI~edkaEVe~LKr  400 (474)
                      |.+++..+..+-.+++.-.+....++.  .|.---+.+.+...++..|..
T Consensus       257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d  306 (562)
T PHA02562        257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKD  306 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHH
Confidence            444555555555555555666666644  555444445444344444443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.64  E-value=11  Score=44.49  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=35.5

Q ss_pred             HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939          249 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA  307 (474)
Q Consensus       249 ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla  307 (474)
                      +|..+..+|-.+..+-.....-+..++.++..+...+.++.......+.+++.+-..++
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444443444444555566677777777777777777666666666666666655

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.53  E-value=8  Score=42.98  Aligned_cols=129  Identities=24%  Similarity=0.314  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhH------HH---HHHHHHHHHHHhHHHHHHhhhHHHH
Q 011939          275 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER------EV---VEAAIESIAGELEVERKLRRRFESL  345 (474)
Q Consensus       275 k~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~------ek---i~aai~slk~ELe~ERK~Rrr~E~l  345 (474)
                      .+||-.||.-|.+-.+++-....+|..|--.+.+=|.-|-.+++      ++   ....+-.+.+|+.-=++..+.+|.-
T Consensus        91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e  170 (546)
T KOG0977|consen   91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE  170 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            45555555555555444444444444444444444444444322      22   3466778888888888889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh----cccHHHHHHHHHHhH
Q 011939          346 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI----NDDKSEVEELKRESA  403 (474)
Q Consensus       346 N~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI----~edkaEVe~LKres~  403 (474)
                      ...|.+|..-....+..+.++++.|.-.|.-.+.=|..|-.+|    ..++.||+++++...
T Consensus       171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~  232 (546)
T KOG0977|consen  171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR  232 (546)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            9999999999999999999999999988888888887776665    456677777766544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.40  E-value=10  Score=42.16  Aligned_cols=46  Identities=33%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011939          245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR  293 (474)
Q Consensus       245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~  293 (474)
                      +--.||++....+   +++-..--.-|..|+.+|.+++....+|..+.+
T Consensus       150 kE~eeL~~~~~~L---e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k  195 (546)
T PF07888_consen  150 KEKEELLKENEQL---EEEVEQLREEVERLEAELEQEEEEMEQLKQQQK  195 (546)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555544433   333333334566666666666666666655543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.19  E-value=16  Score=46.13  Aligned_cols=113  Identities=19%  Similarity=0.296  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHH--HHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939          270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK--AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK  347 (474)
Q Consensus       270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK--~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~  347 (474)
                      .++.|+..++.-..++.+|..-.....+++..|-+++.|..  .+--++....+..-|++++.+|+.|-+.+--++...+
T Consensus      1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555666666666666667777889999999987654  4445666777788899999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939          348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN  389 (474)
Q Consensus       348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~  389 (474)
                      .|-.|+...+       ..||.+-..+..++.---+...++.
T Consensus      1326 ~l~~e~~~l~-------e~leee~e~~~~l~r~lsk~~~e~~ 1360 (1930)
T KOG0161|consen 1326 QLEHELDLLR-------EQLEEEQEAKNELERKLSKANAELA 1360 (1930)
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888755433       3455555555444443333333333

>PRK02224 chromosome segregation protein; Provisional

Probab=93.99  E-value=13  Score=41.81  Aligned_cols=32  Identities=9%  Similarity=0.173  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 011939          269 SLVSALHAELERARLQVNQLIQEQRSDQSEIS  300 (474)
Q Consensus       269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie  300 (474)
                      .++.-+...++.....+.+|+.+....+.+++
T Consensus       468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e  499 (880)
T PRK02224        468 ETIEEDRERVEELEAELEDLEEEVEEVEERLE  499 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666666655554444444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.87  E-value=17  Score=43.30  Aligned_cols=189  Identities=14%  Similarity=0.213  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHH-------HhHHHHHHhh
Q 011939          271 VSALHAELERARLQVNQLIQEQRSD---QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAG-------ELEVERKLRR  340 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~---~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~-------ELe~ERK~Rr  340 (474)
                      +.+.+.||++.-.+|+.|+.-.+-.   +.+++-.+..++=-+---..-+.-++-+.++.+.+       ++....+.=+
T Consensus       686 ~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k  765 (1174)
T KOG0933|consen  686 LRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALK  765 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666666655544332   22333334333333222223334444444444433       3334444433


Q ss_pred             hHHHHhHH------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Q 011939          341 RFESLNKK------------------LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRES  402 (474)
Q Consensus       341 r~E~lN~K------------------L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres  402 (474)
                      ..+.--..                  |.+||..+|.-+...-+++|+-....+.|.--|++|-++|..++...+.+....
T Consensus       766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~  845 (1174)
T KOG0933|consen  766 KCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQI  845 (1174)
T ss_pred             HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332222                  455666666666666677777777788888899999999999988888887776


Q ss_pred             HHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939          403 AIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK  460 (474)
Q Consensus       403 ~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~  460 (474)
                      ..+-.|+..=+-=+-=++.=. .-+|-.|.+-+.-+-+=+..++.+..+.|.|+..+.
T Consensus       846 ~~l~~e~~~l~~kv~~~~~~~-~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~  902 (1174)
T KOG0933|consen  846 SSLKSELGNLEAKVDKVEKDV-KKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS  902 (1174)
T ss_pred             HHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh
Confidence            655444433211111111111 234555555555555556677778888888887765

>PRK11637 AmiB activator; Provisional

Probab=93.13  E-value=7.9  Score=40.50  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=12.5

Q ss_pred             HHHHHhhhcccHHHHHHHHHHhHHH
Q 011939          381 CDELARDINDDKSEVEELKRESAIA  405 (474)
Q Consensus       381 CDELAkeI~edkaEVe~LKres~k~  405 (474)
                      -++|...+.++.+++..|+++..++
T Consensus       221 l~~L~~~~~~~~~~l~~l~~~~~~L  245 (428)
T PRK11637        221 LTGLESSLQKDQQQLSELRANESRL  245 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555544443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.65  E-value=2.4  Score=47.47  Aligned_cols=139  Identities=23%  Similarity=0.322  Sum_probs=83.3

Q ss_pred             hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 011939          245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA  324 (474)
Q Consensus       245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa  324 (474)
                      .|-.+|...-+..   ++.-++-.+.|..+-.||+.|+.+|..|++|.       ++|.-|++...-.-+...-+-|.+ 
T Consensus       214 ~t~~el~~~~s~~---dee~~~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~~-  282 (629)
T KOG0963|consen  214 DTQNELFDLKSKY---DEEVAAKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDIDA-  282 (629)
T ss_pred             hhhhHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchHH-
Confidence            3444444433332   33344556889999999999999999998875       566666665543333221122222 


Q ss_pred             HHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhcccHHHHHHHHHH
Q 011939          325 IESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA---RDINDDKSEVEELKRE  401 (474)
Q Consensus       325 i~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELA---keI~edkaEVe~LKre  401 (474)
                         +..-|..       .+++|.+|..++-..+.|+..             .+|..|.++.   ++...+..++++|+.+
T Consensus       283 ---~~~~L~~-------kd~~i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~k  339 (629)
T KOG0963|consen  283 ---LGSVLNQ-------KDSEIAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEK  339 (629)
T ss_pred             ---HHHHHhH-------HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2223333       788899998888777777654             3444444433   3344455566666655


Q ss_pred             --hHHHHHHHHHhHHHHH
Q 011939          402 --SAIALEEVEKEREMIQ  417 (474)
Q Consensus       402 --s~k~reE~EeER~MLq  417 (474)
                        +..+++|+..|-.+|+
T Consensus       340 L~~~sDYeeIK~ELsiLk  357 (629)
T KOG0963|consen  340 LNSRSDYEEIKKELSILK  357 (629)
T ss_pred             HhhhccHHHHHHHHHHHH
Confidence              3356667777777775

>PRK03918 chromosome segregation protein; Provisional

Probab=92.00  E-value=25  Score=39.51  Aligned_cols=19  Identities=21%  Similarity=0.487  Sum_probs=13.3

Q ss_pred             hhchHHHHHHHHhhcCCCC
Q 011939          244 LTTSKELLKIINRMWGQED  262 (474)
Q Consensus       244 L~TS~ELlkVlnriw~lee  262 (474)
                      +++.++..++|.+|-+++.
T Consensus       141 ~~~~~~r~~~~~~~~~~~~  159 (880)
T PRK03918        141 LESDESREKVVRQILGLDD  159 (880)
T ss_pred             hcCcHHHHHHHHHHhCCHH
Confidence            4566788888888866544

>PRK09039 hypothetical protein; Validated

Probab=91.94  E-value=17  Score=37.65  Aligned_cols=154  Identities=18%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG  350 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~  350 (474)
                      |+.+..||+...++|.+|-.--..++.                   ....+...|..++.+|+.=+..|.++|.....+.
T Consensus        48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~  108 (343)
T PRK09039         48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA  108 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            788899999999999874432222221                   2344455555666666655556666666555444


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 011939          351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK  430 (474)
Q Consensus       351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMK  430 (474)
                      ....+++..+...-.+|..++       .+-.|--..|.-.+++|++||.....+..+++.=....      .+-++|+.
T Consensus       109 ~~~~~~~~~~~~l~~~L~~~k-------~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~------~~~~~~i~  175 (343)
T PRK09039        109 GAGAAAEGRAGELAQELDSEK-------QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD------RESQAKIA  175 (343)
T ss_pred             hhcchHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            433344433333322332222       22334444455556666666666555544433211111      22222222


Q ss_pred             hhHhh--hhhhhhhHHHHHHHHHHHHHH
Q 011939          431 LSEAK--YQLEEKNAAVDKLRSQLEAFS  456 (474)
Q Consensus       431 L~eAk--~~lEeK~s~ldkL~~elE~FL  456 (474)
                      -...+  .++.+|...|.+++.++..=|
T Consensus       176 ~L~~~L~~a~~~~~~~l~~~~~~~~~~l  203 (343)
T PRK09039        176 DLGRRLNVALAQRVQELNRYRSEFFGRL  203 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            22222  234456667777777774333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=91.40  E-value=25  Score=38.37  Aligned_cols=70  Identities=27%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             HHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 011939          382 DELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ  459 (474)
Q Consensus       382 DELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk  459 (474)
                      +++..+..+-+.+.+.++.+..+++.|++.=+-.+.-+|        +||..|.-.++.-.+.-.....+|.+.-.+.
T Consensus       375 qql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~  444 (522)
T PF05701_consen  375 QQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSESE  444 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            344444555566666666666677777777777776665        5565666555555566666677777654443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.28  E-value=26  Score=41.76  Aligned_cols=182  Identities=21%  Similarity=0.262  Sum_probs=111.0

Q ss_pred             HHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHH------H
Q 011939          252 KIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA------I  325 (474)
Q Consensus       252 kVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa------i  325 (474)
                      .+.+.+--|+++-.++.--=.-+..+|+.++..+..|..+..    +|++.++-+-+||..-+..+.+-++.-      |
T Consensus       234 E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~----ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  234 EINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIK----ELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            333333333444333222233455678888888888877764    678888888888877777666555544      8


Q ss_pred             HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHH-HHHHhhhccc------
Q 011939          326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDT-------EKRARVVIEQVC-DELARDINDD------  391 (474)
Q Consensus       326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~-------ERKaRellE~vC-DELAkeI~ed------  391 (474)
                      .++.++++.++.-|......+.++..++.+-+--+++....|..       .++.=..+++-- |=+||. |.+      
T Consensus       310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq-gr~sqFssk  388 (1200)
T KOG0964|consen  310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ-GRYSQFSSK  388 (1200)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-ccccccCcH
Confidence            89999999999999999999999988777777766665544432       222222222211 122222 111      


Q ss_pred             -------HHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939          392 -------KSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLE  453 (474)
Q Consensus       392 -------kaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE  453 (474)
                             +.|++.|++-             +.-.  -=+++=.||-+.+++..+++|+..+..|...|.
T Consensus       389 ~eRDkwir~ei~~l~~~-------------i~~~--ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~  442 (1200)
T KOG0964|consen  389 EERDKWIRSEIEKLKRG-------------INDT--KEQENILQKEIEDLESELKEKLEEIKELESSIN  442 (1200)
T ss_pred             HHHHHHHHHHHHHHHHH-------------Hhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence                   1222222221             1111  114566788899999999888888877766654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=91.05  E-value=38  Score=39.93  Aligned_cols=80  Identities=26%  Similarity=0.362  Sum_probs=60.2

Q ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHHhH---H
Q 011939          339 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-----------RVVIEQVCDELARDINDDKSEVEELKRESA---I  404 (474)
Q Consensus       339 Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa-----------RellE~vCDELAkeI~edkaEVe~LKres~---k  404 (474)
                      .+.++.-|..|++||++-..-++-.-.+|+.++++           +..++.---+|.++|.+...++-+-|++.+   .
T Consensus       272 m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfdd  351 (1265)
T KOG0976|consen  272 MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDD  351 (1265)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            35678889999999998776666666667777654           456777788888888888888877777744   4


Q ss_pred             HHHHHHHhHHHHHH
Q 011939          405 ALEEVEKEREMIQV  418 (474)
Q Consensus       405 ~reE~EeER~MLqm  418 (474)
                      .+.|+|++|-|+-|
T Consensus       352 k~~eLEKkrd~al~  365 (1265)
T KOG0976|consen  352 KLNELEKKRDMALM  365 (1265)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55688888888755

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=91.02  E-value=14  Score=43.23  Aligned_cols=100  Identities=20%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             ccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh
Q 011939          237 LKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK  316 (474)
Q Consensus       237 ~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK  316 (474)
                      ++-+.--|+.|.+..+||+++.  + ...--+|-+..+--+||.+=..|+--.--+.....+++.+++...+=-..--+|
T Consensus       839 ~~K~~~l~kns~k~~ei~s~lk--e-~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk  915 (1259)
T KOG0163|consen  839 IRKINALLKNSLKTIEILSRLK--E-GREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSK  915 (1259)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHh--c-chHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3455566888999999999986  3 444555678888888888888887433333444556666666654433333345


Q ss_pred             hHHHHHH--HHHHHHHHhHHHHHHh
Q 011939          317 EREVVEA--AIESIAGELEVERKLR  339 (474)
Q Consensus       317 E~eki~a--ai~slk~ELe~ERK~R  339 (474)
                      |+.-|..  .++.+.+.+|.||+-|
T Consensus       916 ~~q~~~e~er~rk~qE~~E~ER~rr  940 (1259)
T KOG0163|consen  916 EQQQIEELERLRKIQELAEAERKRR  940 (1259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5544443  3566777888888754

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=90.93  E-value=17  Score=35.55  Aligned_cols=69  Identities=22%  Similarity=0.389  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011939          315 NKEREVVEAAIESIAGELEVERKLRRR-FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA  385 (474)
Q Consensus       315 sKE~eki~aai~slk~ELe~ERK~Rrr-~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELA  385 (474)
                      +.--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-..  .++.+...++..++|.+.
T Consensus        91 ~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~  160 (247)
T PF06705_consen   91 QSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEEN  160 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            334455556677788888888887766 788888888888887776655221  122223345555555443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=90.92  E-value=42  Score=40.14  Aligned_cols=56  Identities=20%  Similarity=0.192  Sum_probs=43.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHH
Q 011939          267 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE  322 (474)
Q Consensus       267 ~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~  322 (474)
                      .-.-|..++.++.+++..++......+..+.+.+.+-.++.+++...+.+-...+.
T Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  688 (1201)
T PF12128_consen  633 INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLN  688 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568889999999999998888888888888888877777777776665555444

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []

Probab=90.87  E-value=6.1  Score=35.30  Aligned_cols=55  Identities=20%  Similarity=0.115  Sum_probs=33.8

Q ss_pred             HHHHHHHHhhcCCCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 011939          248 KELLKIINRMWGQEDRP------SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYL  302 (474)
Q Consensus       248 ~ELlkVlnriw~leeq~------~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l  302 (474)
                      +-|+|.+..+-.+.+..      ...-.+.-.+..+|+.+...+..+..=..+++.++++.
T Consensus        19 ~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y   79 (139)
T PF05615_consen   19 KRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENY   79 (139)
T ss_pred             HHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666655554432      24445677777888888887777766666655544443

This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.

>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1)

Probab=90.43  E-value=3.5  Score=40.24  Aligned_cols=151  Identities=21%  Similarity=0.330  Sum_probs=78.1

Q ss_pred             hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhh-hhhHHHHHHHH
Q 011939          247 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVEAAI  325 (474)
Q Consensus       247 S~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~aai  325 (474)
                      -+|||+.|+=+=  +|-++-+ -+|.+|++|-      ++.++.|.+=-...+.+-+.-|--|-.+-. ..+.+   ++.
T Consensus        12 k~dLL~LLsilE--GELqARD-~vI~~Lkaer------~~~~~~e~~Yg~~~~~dp~~ALqRD~~~~~~~~~~~---~v~   79 (192)
T PF09727_consen   12 KDDLLKLLSILE--GELQARD-VVIAMLKAER------KKVFLLEARYGFYNPNDPFLALQRDSEAAGGEKEEE---DVY   79 (192)
T ss_pred             HHHHHHHHHHHH--HHHHHHH-HHHHHHHHhh------hhHHHHHHHHcCCCcCcHHHHHHhHHHhcCCCCccC---cch
Confidence            368998888763  5556544 4578887762      233333331111112222222222211111 11111   112


Q ss_pred             HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHhhhcccHHH
Q 011939          326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVV-----------IEQVCDELARDINDDKSE  394 (474)
Q Consensus       326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRel-----------lE~vCDELAkeI~edkaE  394 (474)
                      ..=-.+|+   ++--+--..+.|+..-|+.+...-.+.+.|||.|++...-           ||.-.+-|-+.|.-.++.
T Consensus        80 ~~pl~~Le---~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~  156 (192)
T PF09727_consen   80 ENPLAELE---KLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQ  156 (192)
T ss_pred             hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222232   2333444567889999999999999999999999998764           444444444444444444


Q ss_pred             HHHHHHHhHHHHHHHHHh
Q 011939          395 VEELKRESAIALEEVEKE  412 (474)
Q Consensus       395 Ve~LKres~k~reE~EeE  412 (474)
                      +..+-++..|....+++|
T Consensus       157 ~~~~EkE~~K~~~~l~eE  174 (192)
T PF09727_consen  157 QKKLEKEHKKLVSQLEEE  174 (192)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444443333333

In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=89.76  E-value=49  Score=39.11  Aligned_cols=120  Identities=19%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHhHHHH
Q 011939          282 RLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR-----------RFESLNKKLG  350 (474)
Q Consensus       282 R~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rr-----------r~E~lN~KL~  350 (474)
                      ...|.|+--..+..-++|+.-|+++.--.. -=.+|.--....|..++.||+.+++.|-           =++..|.||.
T Consensus       251 ~s~i~E~d~~lq~sak~ieE~m~qlk~kns-~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmklt  329 (1265)
T KOG0976|consen  251 CSMIEEQDMDLQASAKEIEEKMRQLKAKNS-VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLT  329 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            344444444444444445444444322111 1123444445678889999999998664           4688999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHHh
Q 011939          351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL---ARDINDDKSEVEELKRES  402 (474)
Q Consensus       351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL---AkeI~edkaEVe~LKres  402 (474)
                      ++.+++..++..+...+|-=-.-+.=||+--|++   |+-|.+.+.-|+++++..
T Consensus       330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL  384 (1265)
T KOG0976|consen  330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL  384 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9999998887766544433333333333333322   344555555555555543

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.90  E-value=36  Score=41.23  Aligned_cols=62  Identities=19%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 011939          349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE  410 (474)
Q Consensus       349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~E  410 (474)
                      .--||...+.....+++.+|.-+.+=.-+..--+|-.-+|.+.+.++..+|.|...+..+++
T Consensus       505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~  566 (1293)
T KOG0996|consen  505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP  566 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence            34566677777777888888888887777888888888899999999998888776655543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.44  E-value=20  Score=32.95  Aligned_cols=93  Identities=28%  Similarity=0.369  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 011939          271 VSALHAELERARLQ-------VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE  343 (474)
Q Consensus       271 vsaLk~EL~~AR~r-------I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E  343 (474)
                      +.+|+.|.+-|..+       |++|+++.-.-.++|..|-+++.-=     -.+-|++...|..++..|+.--+....+|
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E   76 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE   76 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence            45677777666555       5555555555566777775544311     12478999999999999999999999999


Q ss_pred             HHhHHHH---HHHHHHHHHHHHHHhHHH
Q 011939          344 SLNKKLG---KELAETKHSLLKAVKDLD  368 (474)
Q Consensus       344 ~lN~KL~---~ELaE~Kss~~~alkelE  368 (474)
                      .||+|+.   .||..+...+.-+...|.
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999964   566666665555555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=88.13  E-value=43  Score=36.34  Aligned_cols=48  Identities=17%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             hchHHHHHHHHhhcCCC-CCCC---cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011939          245 TTSKELLKIINRMWGQE-DRPS---SSMSLVSALHAELERARLQVNQLIQEQ  292 (474)
Q Consensus       245 ~TS~ELlkVlnriw~le-eq~~---s~~SlvsaLk~EL~~AR~rI~eL~~E~  292 (474)
                      ..-.+|..++|.++... +...   ...++|...+.+++....+|.+|..+.
T Consensus       223 ~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~  274 (582)
T PF09731_consen  223 PEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEE  274 (582)
T ss_pred             hhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33388999999986322 2222   345666666666666666666555543

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=87.87  E-value=24  Score=33.08  Aligned_cols=66  Identities=20%  Similarity=0.431  Sum_probs=46.6

Q ss_pred             HHhhhHHHHhHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939          337 KLRRRFESLNKKLGKELAETKHSLLK-------AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI  404 (474)
Q Consensus       337 K~Rrr~E~lN~KL~~ELaE~Kss~~~-------alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k  404 (474)
                      ++++.++.++.+|..|+..++..++-       -+++.......+  +.++-.++..+|++.+.++|.+|-+..+
T Consensus        84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr  156 (177)
T PF07798_consen   84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR  156 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777788888888888777775543       223333332222  7888889999999999999988877554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.74  E-value=71  Score=39.05  Aligned_cols=40  Identities=33%  Similarity=0.386  Sum_probs=33.9

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHH
Q 011939          315 NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA  354 (474)
Q Consensus       315 sKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELa  354 (474)
                      .+.+..+.++.++++.|.+++.|+|.+.+.+++.|-.++.
T Consensus       542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e  581 (1317)
T KOG0612|consen  542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE  581 (1317)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence            3455667788889999999999999999999998887776

>TIGR00606 rad50 rad50

Probab=87.42  E-value=75  Score=38.35  Aligned_cols=62  Identities=6%  Similarity=0.070  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE  333 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe  333 (474)
                      +..|..++...+..|.++..+......+++.+...+.+-+..-..++ +.+...++.++..+.
T Consensus       890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  951 (1311)
T TIGR00606       890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN-KKAQDKVNDIKEKVK  951 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            33444445555555555555555544555554444444332222222 333444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=87.21  E-value=23  Score=42.34  Aligned_cols=149  Identities=20%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG  350 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~  350 (474)
                      +..+.--|---.++|.++..|.-....|++.+.+-|- .+..-.+...+.++.+-.+++.-=..=+.+++.++.++.-+-
T Consensus       311 ~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~-~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~  389 (1074)
T KOG0250|consen  311 IEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD-DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN  389 (1074)
T ss_pred             HHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444433344455555555555555555555444332 222333444455555544444444444445555555544443


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH-hHHHHHHhHhhhHHhhhh
Q 011939          351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK-EREMIQVADVLREERAQI  429 (474)
Q Consensus       351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee-ER~MLqmAEvWREERVQM  429 (474)
                      +++-.-   ..+.-.+++.-.+..+-+|.+-..|       ++|.+.++.+.....+|.+. ++.++|+.-.-..--.++
T Consensus       390 ~~~~~~---~~e~e~k~~~L~~evek~e~~~~~L-------~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l  459 (1074)
T KOG0250|consen  390 NELGSE---LEERENKLEQLKKEVEKLEEQINSL-------REELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL  459 (1074)
T ss_pred             hhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322221   1122223333333344444433333       33444444444444444432 355566655554444444


Q ss_pred             h
Q 011939          430 K  430 (474)
Q Consensus       430 K  430 (474)
                      +
T Consensus       460 ~  460 (1074)
T KOG0250|consen  460 K  460 (1074)
T ss_pred             H
Confidence            4

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.04  E-value=5.5  Score=40.78  Aligned_cols=49  Identities=22%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 011939          360 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE  408 (474)
Q Consensus       360 ~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE  408 (474)
                      +...-++-+...+.=+-+|+-+++|.++|.+.+.|...|..+-.+.|.+
T Consensus        52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~  100 (314)
T PF04111_consen   52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE  100 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444445577778888888888888888887765555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.00  E-value=19  Score=38.88  Aligned_cols=163  Identities=26%  Similarity=0.375  Sum_probs=82.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhchh---HHHHHHHHhHHHHHH------hhhhhHHHHHHHHHHHHHHhHHHHHH
Q 011939          268 MSLVSALHAELERARLQVNQLIQEQRSDQS---EISYLMKCFAEEKAA------WKNKEREVVEAAIESIAGELEVERKL  338 (474)
Q Consensus       268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~---eie~l~KqlaEEK~a------wKsKE~eki~aai~slk~ELe~ERK~  338 (474)
                      .|++.|+..   +-|--|+.|+.+++..-.   +=|+|.-+|.-|+-.      +..-|..|..-+-+-|--.|+.||+ 
T Consensus       106 ~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~-  181 (561)
T KOG1103|consen  106 ASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK-  181 (561)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            355544432   345557777777654321   223333333332211      1111222333333445566787765 


Q ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HhhhcccHHHHHHHHHHhHH
Q 011939          339 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL--------------ARDINDDKSEVEELKRESAI  404 (474)
Q Consensus       339 Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL--------------AkeI~edkaEVe~LKres~k  404 (474)
                        |-|.+..-|.-|   -|.++.+   --|.-.|+-+||=++-.+=              -+|+ ..++.||       |
T Consensus       182 --RHeqis~mLilE---cKka~~K---aaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqve-------k  245 (561)
T KOG1103|consen  182 --RHEQISLMLILE---CKKALLK---AAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQVE-------K  245 (561)
T ss_pred             --HHHHHHHHHHHH---HHHHHHH---HHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHHH-------H
Confidence              344455555544   3333333   3455556666654443322              1121 1233443       5


Q ss_pred             HHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939          405 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN  458 (474)
Q Consensus       405 ~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~s  458 (474)
                      ..+|++.||..|+ |+.=|||.-|--       |-+-+.-|.+...++|+-+..
T Consensus       246 ~i~EfdiEre~LR-Ael~ree~r~K~-------lKeEmeSLkeiVkdlEA~hQh  291 (561)
T KOG1103|consen  246 LIEEFDIEREFLR-AELEREEKRQKM-------LKEEMESLKEIVKDLEADHQH  291 (561)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhh
Confidence            6678888998886 788888877733       333455566666777776654

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=86.51  E-value=71  Score=37.16  Aligned_cols=64  Identities=20%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 011939          340 RRFESLNKKLGKELAETKHSLL-------KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA  403 (474)
Q Consensus       340 rr~E~lN~KL~~ELaE~Kss~~-------~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~  403 (474)
                      ..+|..+++|-.|+.-.++-+.       .-.+++|-.+-....|-.=||.+..+++.-++|+.+|..+..
T Consensus       241 ~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~  311 (775)
T PF10174_consen  241 ASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLE  311 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666667777666655322       223567777777777777799999999999988888776644

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.23  E-value=75  Score=37.55  Aligned_cols=66  Identities=20%  Similarity=0.361  Sum_probs=48.5

Q ss_pred             HhhhHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 011939          338 LRRRFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA  403 (474)
Q Consensus       338 ~Rrr~E~lN~KL---~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~  403 (474)
                      +-.++|.||-|+   ---|.|+..-+-++..++|.-++.|+++-.--|+|-..|.|+.+.+-.|-.|..
T Consensus       442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq  510 (1118)
T KOG1029|consen  442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ  510 (1118)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            445677888775   335667777777888888888888888888888888888887777666655544

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.92  E-value=51  Score=34.97  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH---HHHHhHHHHHHhHhh-hH
Q 011939          349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE---EVEKEREMIQVADVL-RE  424 (474)
Q Consensus       349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~re---E~EeER~MLqmAEvW-RE  424 (474)
                      +..++.+.+..+.....+++.-.+.+.-++.--.+|-..+.+...++..+..+...+..   +++.|+.+..+..-+ .+
T Consensus       335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~  414 (562)
T PHA02562        335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD  414 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555554555555555555555555555555555555444433   345555554332222 44


Q ss_pred             Hhhh
Q 011939          425 ERAQ  428 (474)
Q Consensus       425 ERVQ  428 (474)
                      .++.
T Consensus       415 ~g~~  418 (562)
T PHA02562        415 SGIK  418 (562)
T ss_pred             hhHH
Confidence            4443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=85.76  E-value=47  Score=37.85  Aligned_cols=139  Identities=23%  Similarity=0.266  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 011939          316 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV  395 (474)
Q Consensus       316 KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEV  395 (474)
                      |+.++...-+-.+..+|+..+...-+.+..   |-. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus       175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~---l~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l  250 (670)
T KOG0239|consen  175 KESLKLESDLGDLVTELEHVTNSISELESV---LKS-AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL  250 (670)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---hhh-hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            344455555555556665555444332222   111 2222333333333455555666677888888888899999999


Q ss_pred             HHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhh-hhhhhHhhhhhhhhh---HHHHHHHHHHHHHHhhhc
Q 011939          396 EELKRESAIALEEVEKEREMIQVADVLREERA-QIKLSEAKYQLEEKN---AAVDKLRSQLEAFSRNQK  460 (474)
Q Consensus       396 e~LKres~k~reE~EeER~MLqmAEvWREERV-QMKL~eAk~~lEeK~---s~ldkL~~elE~FL~sk~  460 (474)
                      ..|+.+...+.+++.+-..+  +.+.|.+-+. |-.|.++...|-+++   .+--+|.++|..+...-+
T Consensus       251 ~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR  317 (670)
T KOG0239|consen  251 EELKAELKELNDQVSLLTRE--VQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR  317 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence            99998887776654443333  5577888777 456778888888888   788889999887766533

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.70  E-value=59  Score=37.51  Aligned_cols=218  Identities=15%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             ccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH---------
Q 011939          237 LKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA---------  307 (474)
Q Consensus       237 ~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla---------  307 (474)
                      +++--+++..+..++.-+++.|..+.+++   +-|--+..-|-+-...++.+.+.+.....++.++++.+-         
T Consensus       348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~---~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl  424 (716)
T KOG4593|consen  348 LKNKNSTVTSPARGLERARQLLKEELKQV---AGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRL  424 (716)
T ss_pred             hccccccccCcccchHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHH----------HHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011939          308 EEKAAWKNKEREVVEAAIESIA----------GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVI  377 (474)
Q Consensus       308 EEK~awKsKE~eki~aai~slk----------~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRell  377 (474)
                      .+..---.++.|.+++.|+.+.          +++..+=..+++.   +.+|..++.+..+.+...-+++..-|+.++++
T Consensus       425 ~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~---~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~  501 (716)
T KOG4593|consen  425 AEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKR---LEKLEHELKDLQSQLSSREQSLLFQREESELL  501 (716)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh


Q ss_pred             HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHh
Q 011939          378 EQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSR  457 (474)
Q Consensus       378 E~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~  457 (474)
                      -+--+.+.+++...+.|-..|+-..+.-.-+.+.+-..-.+        |||..-=+=-+-..|-..+..|++|+++...
T Consensus       502 ~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rV--------l~~~~npt~~~~~~~k~~~e~LqaE~~~lk~  573 (716)
T KOG4593|consen  502 REKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRV--------LHMSTNPTSKARQIKKNRLEELQAELERLKE  573 (716)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccce--------eeecCCchHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hhccCCcc-cch
Q 011939          458 NQKGKRKR-TQF  468 (474)
Q Consensus       458 sk~~~~~~-~~~  468 (474)
                      --.+-..+ +++
T Consensus       574 ~l~~le~~~~~~  585 (716)
T KOG4593|consen  574 RLTALEGDKMQF  585 (716)
T ss_pred             HHHHHhccCCcc

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=84.77  E-value=34  Score=32.08  Aligned_cols=86  Identities=23%  Similarity=0.320  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH--------HHHHh
Q 011939          269 SLVSALHAELERAR-LQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV--------ERKLR  339 (474)
Q Consensus       269 SlvsaLk~EL~~AR-~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~--------ERK~R  339 (474)
                      +-++.|+.|+...+ ..+..|..+...-+.+++.|-.+|.+|-        .++++   +++-+++.        .....
T Consensus        58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei--------~~l~a---~~klD~n~eK~~~r~e~~~~~  126 (177)
T PF07798_consen   58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEI--------NKLRA---EVKLDLNLEKGRIREEQAKQE  126 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---HHHHHHHHhHHHHHHHHHHHH
Confidence            34556666665443 5566666666666667777666666652        22222   23333332        23455


Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHHh
Q 011939          340 RRFESLNKKLGKELAETKHSLLKAVK  365 (474)
Q Consensus       340 rr~E~lN~KL~~ELaE~Kss~~~alk  365 (474)
                      .++..+|.|+..|++.++..+....-
T Consensus       127 ~ki~e~~~ki~~ei~~lr~~iE~~K~  152 (177)
T PF07798_consen  127 LKIQELNNKIDTEIANLRTEIESLKW  152 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999988887665433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=84.15  E-value=91  Score=36.33  Aligned_cols=41  Identities=29%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHh
Q 011939          381 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADV  421 (474)
Q Consensus       381 CDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEv  421 (474)
                      |-++...|...+.+|...+.++.+.+.|||.=..||+-+|.
T Consensus       543 ~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~  583 (775)
T PF10174_consen  543 NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN  583 (775)
T ss_pred             CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667778888889999999999999888888888887774

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.56  E-value=44  Score=32.18  Aligned_cols=71  Identities=24%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             HHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHH
Q 011939          380 VCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQ  451 (474)
Q Consensus       380 vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~e  451 (474)
                      =|+.|-..|...+.+++..+.+....++.++.-+..|. +-.=..+..+..+.+....+.+....+..+...
T Consensus        71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  141 (302)
T PF10186_consen   71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQ  141 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444445555555555 222222334444444444444444444443333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.26  E-value=45  Score=32.10  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHhHHHH
Q 011939          319 EVVEAAIESIAGELEVER  336 (474)
Q Consensus       319 eki~aai~slk~ELe~ER  336 (474)
                      +.++..|+.++.+++..|
T Consensus        73 ~~l~~~i~~~~~~i~~~r   90 (302)
T PF10186_consen   73 ERLRERIERLRKRIEQKR   90 (302)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444555544443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.67  E-value=57  Score=32.84  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=15.5

Q ss_pred             hhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939          430 KLSEAKYQLEEKNAAVDKLRSQLEA  454 (474)
Q Consensus       430 KL~eAk~~lEeK~s~ldkL~~elE~  454 (474)
                      ++.+++..+.+-...++.+..+++.
T Consensus       247 ~l~~~~~~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       247 ELTEAQARLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556666666666666666666654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=82.60  E-value=47  Score=31.92  Aligned_cols=92  Identities=18%  Similarity=0.278  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc----------------hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 011939          268 MSLVSALHAELERARLQVNQLIQEQRSD----------------QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE  331 (474)
Q Consensus       268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~----------------~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~E  331 (474)
                      .-||..|++.+.+-+.++.+|++-..+.                -.+|+.++.+|.||+.  ++   +.+...-.-+++.
T Consensus        15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~---~~L~qvN~lLReQ   89 (182)
T PF15035_consen   15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RS---EELAQVNALLREQ   89 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hH---HHHHHHHHHHHHH
Confidence            3689999999999999999998866322                2578889999999974  33   3334444556777


Q ss_pred             hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011939          332 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK  371 (474)
Q Consensus       332 Le~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ER  371 (474)
                      ||..+       ..|..|..||.-+...+..+..+|+...
T Consensus        90 LEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke  122 (182)
T PF15035_consen   90 LEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE  122 (182)
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655       4678888888888888887777776543

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=82.23  E-value=63  Score=33.29  Aligned_cols=67  Identities=25%  Similarity=0.354  Sum_probs=41.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhH
Q 011939          364 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNA  443 (474)
Q Consensus       364 lkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s  443 (474)
                      ..|+-+---++.-||.+|.||-+.....+.|...+-++-...|.|       +       .+..|.-|.|-...+++...
T Consensus        63 ~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~e-------l-------~~kFq~~L~dIq~~~ee~~~  128 (309)
T PF09728_consen   63 QSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKE-------L-------SEKFQATLKDIQAQMEEQSE  128 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHhccc
Confidence            334445556788999999999999877766655544443333333       2       24556666666665555543


Q ss_pred             H
Q 011939          444 A  444 (474)
Q Consensus       444 ~  444 (474)
                      .
T Consensus       129 ~  129 (309)
T PF09728_consen  129 R  129 (309)
T ss_pred             h
Confidence            3

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.08  E-value=1.2e+02  Score=36.38  Aligned_cols=90  Identities=21%  Similarity=0.330  Sum_probs=66.0

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939          311 AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND  390 (474)
Q Consensus       311 ~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~e  390 (474)
                      ..||+|    |-+.+-+|..||-++|+.-+.+-..-.++..||+|.--++.=+.       =.+++.|+=.|-|-.++.-
T Consensus       268 qEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaT-------ldKEmAEERaesLQ~eve~  336 (1243)
T KOG0971|consen  268 QEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMAT-------LDKEMAEERAESLQQEVEA  336 (1243)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHH
Confidence            346664    55566789999999999999999999999999999877654433       2345666667777777777


Q ss_pred             cHHHHHHHHHHhHHHHHHHHH
Q 011939          391 DKSEVEELKRESAIALEEVEK  411 (474)
Q Consensus       391 dkaEVe~LKres~k~reE~Ee  411 (474)
                      .+..|++|--+.+-+..|+++
T Consensus       337 lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  337 LKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            777777776666666666653

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=81.69  E-value=1.3e+02  Score=36.25  Aligned_cols=65  Identities=17%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH---HHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLM---KCFAEEKAAWKNKEREVVEAAIESIAGELEVE  335 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~---KqlaEEK~awKsKE~eki~aai~slk~ELe~E  335 (474)
                      +++...+++.++..+.++..+.+..+.++..+.   .++..+...++....+.+...+..+..+|..-
T Consensus       630 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~  697 (1201)
T PF12128_consen  630 LKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQL  697 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555554443   22333344455555555666666665555443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=81.22  E-value=0.37  Score=55.09  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=0.0

Q ss_pred             HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHH-HHHHhhh--hhHHHHHHHH
Q 011939          249 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE-EKAAWKN--KEREVVEAAI  325 (474)
Q Consensus       249 ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaE-EK~awKs--KE~eki~aai  325 (474)
                      +|=-..+..-.++|..--.+.-+..|..||..-|.++.+|+..+......|..|--+|.+ |-.+.++  +.--++.+-|
T Consensus       673 eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri  752 (859)
T PF01576_consen  673 ELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARI  752 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHH
Confidence            344445555566777777888899999999999999999999999999999999888876 3334444  5666788889


Q ss_pred             HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 011939          326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL  398 (474)
Q Consensus       326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~L  398 (474)
                      ..|-.+|+.|.+-+..+...++|+-+=|.|+-.       .+|.+++.-.-+-++||.|-.-|..||..+++.
T Consensus       753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~-------q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea  818 (859)
T PF01576_consen  753 RELEEELESEQRRRAEAQKQLRKLERRVKELQF-------QVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA  818 (859)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            999999999999999999999999887666433       578899999999999999999999998888754

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=81.22  E-value=1.4e+02  Score=37.97  Aligned_cols=129  Identities=26%  Similarity=0.389  Sum_probs=66.8

Q ss_pred             HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939          303 MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD  382 (474)
Q Consensus       303 ~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCD  382 (474)
                      ++.+.+|---||.+-++-+...=+.=..++       +++.+.+.+|-.||.+.+..+.-+-+++..=+   +-+-.--|
T Consensus      1280 l~~l~~e~~~wK~R~q~L~~k~k~~d~~~~-------~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld 1349 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEKYKDSDKNDY-------EKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLD 1349 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            456667777777766665444222111122       12233555555555554444444444444333   33334445


Q ss_pred             HHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhh-hhhhHhhhhhhhhh-----------------HH
Q 011939          383 ELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQ-IKLSEAKYQLEEKN-----------------AA  444 (474)
Q Consensus       383 ELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQ-MKL~eAk~~lEeK~-----------------s~  444 (474)
                      +|-..|.+...+|..++.-             --.+|..|.|.+-| |.|.+++-+.+...                 ++
T Consensus      1350 ~l~~e~~~lt~~~~ql~~~-------------~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e 1416 (1822)
T KOG4674|consen 1350 ELNNEKANLTKELEQLEDL-------------KTRLAAALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEE 1416 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5555555555555544422             12377888888888 77776664433222                 56


Q ss_pred             HHHHHHHHHH
Q 011939          445 VDKLRSQLEA  454 (474)
Q Consensus       445 ldkL~~elE~  454 (474)
                      +..|.-+|+.
T Consensus      1417 ~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1417 LESLKEELEE 1426 (1822)
T ss_pred             HHHHHHHHHH
Confidence            6666666655

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=81.19  E-value=92  Score=36.07  Aligned_cols=160  Identities=18%  Similarity=0.253  Sum_probs=88.0

Q ss_pred             ccccccccccccchhchH----HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 011939          231 VGVKTRLKDVSNALTTSK----ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF  306 (474)
Q Consensus       231 ~~~k~r~~e~~~~L~TS~----ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql  306 (474)
                      .|++...-.+++.+.|..    .|..++++--.+.-|+++..++......+.+-.+.+|=.|..=--.-+       .||
T Consensus       534 ~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKR-------EQI  606 (717)
T PF09730_consen  534 SDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKR-------EQI  606 (717)
T ss_pred             chhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHH-------HHH
Confidence            367777777777777764    455555544333344444333333333333333333333322222212       244


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 011939          307 AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELAR  386 (474)
Q Consensus       307 aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk  386 (474)
                      |-=|.+-|+--+ ...-||-.||...|.|+.+  -.|.+ .||-+||.-.|--              .-..--+|-=||.
T Consensus       607 aTLRTVLKANKq-TAEvALanLKsKYE~EK~~--v~etm-~kLRnELK~LKED--------------AATFsSlRamFa~  668 (717)
T PF09730_consen  607 ATLRTVLKANKQ-TAEVALANLKSKYENEKAM--VSETM-MKLRNELKALKED--------------AATFSSLRAMFAA  668 (717)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh--HHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence            444555555444 6678899999999999876  34444 4677776543322              2223334555666


Q ss_pred             hhcccHHHHHHHHHHhHHHHHHHHHhHH----HHHHh
Q 011939          387 DINDDKSEVEELKRESAIALEEVEKERE----MIQVA  419 (474)
Q Consensus       387 eI~edkaEVe~LKres~k~reE~EeER~----MLqmA  419 (474)
                      .-.+|-.+|++|.|+...    .|+|++    .|+||
T Consensus       669 RCdEYvtQldemqrqL~a----AEdEKKTLNsLLRmA  701 (717)
T PF09730_consen  669 RCDEYVTQLDEMQRQLAA----AEDEKKTLNSLLRMA  701 (717)
T ss_pred             HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence            666677788888887664    455655    45665

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.96  E-value=61  Score=36.98  Aligned_cols=43  Identities=14%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             ccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 011939          233 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHA  276 (474)
Q Consensus       233 ~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~  276 (474)
                      |...+=.+.-.|++...---..+.=|+..+.|.-+ +|..|+++
T Consensus       311 f~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RD-ALAAA~kA  353 (652)
T COG2433         311 FNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERD-ALAAAYKA  353 (652)
T ss_pred             cCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHH-HHHHHHHH
Confidence            66677777777887765554456678889988754 55666655

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=80.63  E-value=32  Score=31.02  Aligned_cols=48  Identities=17%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011939          246 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR  293 (474)
Q Consensus       246 TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~  293 (474)
                      +......|+|=||+|.-++-.++..-..|...+..-++.+..|.....
T Consensus        29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~   76 (151)
T PF11559_consen   29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVE   76 (151)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            446677888888866666555555555555555544444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid

Probab=80.33  E-value=25  Score=38.89  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHhhhc
Q 011939          279 ERARLQVNQLIQEQRSD  295 (474)
Q Consensus       279 ~~AR~rI~eL~~E~~s~  295 (474)
                      ..-+..|+||+.|++.+
T Consensus        87 ~~l~~Kl~eLE~e~k~d  103 (508)
T PF00901_consen   87 QGLQRKLKELEDEQKED  103 (508)
T ss_pred             HHHHHHHHHHHHHHhhH
Confidence            45788888888888754

Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	474
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 82/485 (16%), Positives = 138/485 (28%), Gaps = 127/485 (26%)

Query: 1   MSRQQNQTQN----FFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPV 56
               Q Q ++    F    +    C        SI+        I+         S T  
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV----SGTLR 66

Query: 57  PTWRLMRTTPSSVLRAIDS--QSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
             W L+      V + ++   +  Y  F+      + + +Q    ++  +  R     L+
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYK-FL--MSPIKTEQRQPSMMTRMYIEQRD---RLY 120

Query: 115 EMNEMPSP----------KLRET------------SGGGGY-----------DERRIRRE 141
             N++ +           KLR+              G  G              +   + 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 142 AR-------ARERERERVTRSLHSGSLPPHLSDPSHSPVSERMDRSGTGSHHRRSSSISQ 194
                          E V   L    L   + DP+ +    R D S       R  SI  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQK--LLYQI-DPNWT---SRSDHSSNIKL--RIHSIQA 232

Query: 195 RLR-LTESNGG-----VLDSVSNASLME---------VETRSRAQTPS-GSTVGVKTRLK 238
            LR L +S        VL +V NA             + TR +  T    +       L 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 239 DVSNALTT--SKELL-KIINRMWGQEDRPSSSMS---LVSALHAELER---ARLQ-VNQL 288
             S  LT    K LL K ++     +D P   ++      ++ AE  R   A       +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 289 IQEQRSDQSEISY-------LMKCFAE----EKAA----------WKNKEREVVEAAIES 327
             ++ +   E S          K F        +A          W +  +  V      
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----- 405

Query: 328 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA--RVVIEQVCDELA 385
                 V  KL +   SL +K  KE   +  S+   +K     + A  R +++       
Sbjct: 406 -----VVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 386 RDIND 390
            D +D
Sbjct: 459 FDSDD 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 60/437 (13%), Positives = 120/437 (27%), Gaps = 121/437 (27%)

Query: 88  QHQLQLQ-QQHQHSQQ---PVSARKLAATL--WEMNEMPSPKL--RETSG--GGGYDERR 137
            H +  +  +HQ+  +    V            ++ +MP   L   E             
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 138 IRREARARERERERVTRSLHSGSLPPH---LSDPSHSPVSERMDRSGTGSHHRRSSSISQ 194
             R       ++E + +      L  +   L  P  +   E+   S           I Q
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT---EQRQPSM-----MTRMYIEQ 115

Query: 195 RLRLTESNGGVL---DSVSNASLMEVETRSRAQTPSGSTVGV-------KTRLKDVSNAL 244
           R RL   N   +    +VS         ++  +      V +       KT +    +  
Sbjct: 116 RDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVC 171

Query: 245 TTSKELLKIINRM-W---GQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEIS 300
            + K   K+  ++ W      + P + + ++  L  +++             RSD S   
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--------WTSRSDHSS-- 221

Query: 301 YLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKH-- 358
                                                ++ R  S+  +L + L    +  
Sbjct: 222 ------------------------------------NIKLRIHSIQAELRRLLKSKPYEN 245

Query: 359 SLL--------KAVKDLDTEKRARVVI----EQVCDELARDINDDKSEVEELKRESAIAL 406
            LL        KA    +     ++++    +QV D L+       S            L
Sbjct: 246 CLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSM-----TL 298

Query: 407 EEVEKEREMIQVADV----LREERAQI----------KLSEAKYQLEE-KNAAVDKLRSQ 451
              E +  +++  D     L  E               + +     +  K+   DKL + 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 452 LEAFSRNQKGKRKRTQF 468
           +E+     +    R  F
Sbjct: 359 IESSLNVLEPAEYRKMF 375

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 13/196 (6%)

Query: 271  VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA--EEKAAWKNKEREVVEAAIESI 328
            +  +  ++     Q N+L +E++  +  +S L    A  EEKA    K +   E+ I  +
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

Query: 329  AGELEVERKLRRRFESLNKKLGKELAETKH---SLLKAVKDLDTEKRARV----VIEQVC 381
               L+ E K R+  E + +KL  E ++       L   + +L  +   +           
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104

Query: 382  DELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEK 441
            ++     N+   ++ EL+   +   E++E E+     A+  + + ++ +L   K +LE+ 
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE-ELEALKTELEDT 1163

Query: 442  ---NAAVDKLRSQLEA 454
                A   +LR     
Sbjct: 1164 LDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 32/186 (17%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 270  LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVV--EAAIES 327
            ++  + A +E    +  QL  E++  Q ++  L +   EE+AA +  + E V  +  I+ 
Sbjct: 928  ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987

Query: 328  IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARD 387
            +  ++ +      +     K L + +++   +L +  +      + +   E +  EL   
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

Query: 388  INDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDK 447
            +  ++   +EL++       ++E E   +      +    Q +++E K QL +K   +  
Sbjct: 1048 LKKEEKSRQELEK----IKRKLEGESSDLHE----QIAELQAQIAELKAQLAKKEEELQA 1099

Query: 448  LRSQLE 453
              ++LE
Sbjct: 1100 ALARLE 1105

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 29/193 (15%), Positives = 76/193 (39%), Gaps = 6/193 (3%)

Query: 277  ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVER 336
            +      +   L+QE+   ++E+       AEE       +++ +E  +  +   +E E 
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELY----AEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940

Query: 337  KLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 396
            +  ++ ++  KK+ +++ + +  L +        +  +V  +    ++  DI   + +  
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000

Query: 397  ELKRESAIALEEVEKEREMIQVADVLREE--RAQIKLSEAKYQLEEKNAAVDKLRSQLEA 454
            +L +E  +  E V      +   +   +   + + K      +LE +    +K R +LE 
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 455  FSRNQKGKRKRTQ 467
              R  +G+     
Sbjct: 1061 IKRKLEGESSDLH 1073

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 2/114 (1%)

Query: 272  SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN--KEREVVEAAIESIA 329
            S LH ++   + Q+ +L  +    + E+   +    +E +   N  K+   +E+ I  + 
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 330  GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE 383
             +LE E+  R + E   + L +EL   K  L   +    T++  R    +  D+
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 4/233 (1%)

Query: 233  VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQ 292
            V+ R + + +A    + LL+        +       S++   H     AR+  ++ ++  
Sbjct: 831  VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890

Query: 293  RSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 352
               Q     +M   A+ +      E   VE   +   G      +L+R+ +  NK+  K 
Sbjct: 891  VYLQCCYRRMM---AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY-KS 946

Query: 353  LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKE 412
            L E  ++L         + R+ V   ++ +E A++  +    ++E   +    L + + E
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 413  REMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 465
            ++ I+      +   +  +SE K Q        ++L  ++   ++      ++
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 29/242 (11%)

Query: 232  GVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELER--ARLQVNQLI 289
            G   R K           +++   R W        ++  +  L     R  A+ ++ +L 
Sbjct: 851  GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910

Query: 290  QEQRSDQSEISYLMKCFAEEKAAWKNKEREV---VEAAIESIAGELEVERKLRRRFESLN 346
             E RS +           +     +NK  ++   ++   +     LE    L   + +  
Sbjct: 911  IEARSVERYK--------KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 347  KKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 406
            +KL  ++   +           +E+ A+    +V   L  +I   + E+ + + E     
Sbjct: 963  EKLRSDVERLRM----------SEEEAKNATNRV-LSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 407  EEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQL-EAFSRNQKGKRKR 465
            E  +K +   +   ++ E + Q  L + +   EE N  +     ++ E   +    + K+
Sbjct: 1012 EWADKYKH--ETEQLVSELKEQNTLLKTE--KEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 466  TQ 467
             +
Sbjct: 1068 LE 1069

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	474
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.57
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	96.21
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.37
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.81
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.75
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	93.5
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.37
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.96
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	92.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.61
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.33
2hg7_A	110	Phage-like element PBSX protein XKDW; dimer, GFT s	90.03
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.82
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.83
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	82.86
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	81.85
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	80.98

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.14  E-value=0.013  Score=53.62  Aligned_cols=131  Identities=15%  Similarity=0.258  Sum_probs=100.8

Q ss_pred             hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q 011939          247 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIE  326 (474)
Q Consensus       247 S~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~  326 (474)
                      |+.|+..+|+.=.|+|.       +..++.+|..++.+|+.|+..+.    +++.+.    .+        ..-+.+-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~----~~--------~~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLK----RE--------LSDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHH----TH--------HHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HH--------HhhhhHHHH
Confidence            67899999998766664       67788999999999999998764    333332    22        223566777


Q ss_pred             HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 011939          327 SIAGELEVERKLRRRFESLNKKLGKELAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR  400 (474)
Q Consensus       327 slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss-~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKr  400 (474)
                      .+.++|..|+..|..+|.-..++-.||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..++|-+.-++.|-.
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999997655 45555555678999999988888888888776666655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.57  E-value=0.031  Score=56.93  Aligned_cols=126  Identities=13%  Similarity=0.127  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939          273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE  352 (474)
Q Consensus       273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E  352 (474)
                      .|..|+.+-+..|+.|+.+.......+..+-..+.+.+..+.....+. .    ..++.|+   +..++++..+..+..+
T Consensus       453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-~----~~~~~l~---~~~~~~~~~~~~~~~~  524 (597)
T 3oja_B          453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL-A----RSSDNLN---KVFTHLKERQAFKLRE  524 (597)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-S----CHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc-C----CHHHHHH---HHHHHHHhhhhhhHHH
Confidence            345566666666666666655544444444444444333332100000 0    0001111   1122333355555666


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 011939          353 LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL  406 (474)
Q Consensus       353 LaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~r  406 (474)
                      +...+.++..-.++|+..++.++.||..+++.-+.+.+.+.|+..++.+.....
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666777777777777777777776666666666666665544443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.21  E-value=0.062  Score=45.99  Aligned_cols=91  Identities=19%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939          274 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL  353 (474)
Q Consensus       274 Lk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL  353 (474)
                      |..+|+.+|.+|++|+.+...                          +.+-+..|.++|..|+..|..+|.-..++-.||
T Consensus         3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El   56 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV   56 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788888888888866543                          334445588889999999999999999999999


Q ss_pred             HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939          354 AETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDIND  390 (474)
Q Consensus       354 aE~Kss-~~~alkelE~ERKaRellE~vCDELAkeI~e  390 (474)
                      .+.-.| |..|=+=.-.+|+.+..+|.--+.|...|+|
T Consensus        57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            886655 4455555556677777777766666665544

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.37  E-value=1.3  Score=38.63  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 011939          272 SALHAELERARLQVNQLIQEQRSDQSEISYLM  303 (474)
Q Consensus       272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~  303 (474)
                      .+|+.+++.+...+.+|..+......+++.+-
T Consensus         9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~   40 (284)
T 1c1g_A            9 QMLKLDKENALDRADEAEADKKAAEDRSKQLE   40 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444444444444443333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.81  E-value=0.011  Score=66.83  Aligned_cols=16  Identities=6%  Similarity=0.187  Sum_probs=9.0

Q ss_pred             ccHHHHHHHHhhhcCC
Q 011939          104 VSARKLAATLWEMNEM  119 (474)
Q Consensus       104 vSARKLaAtLWE~n~~  119 (474)
                      +..++.|..|-.-..+
T Consensus       746 ~d~k~~~~~lL~~l~l  761 (1184)
T 1i84_S          746 MDGKQACILMIKALEL  761 (1184)
T ss_dssp             CCHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHcCC
Confidence            4567776666554333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.75  E-value=0.14  Score=57.91  Aligned_cols=11  Identities=36%  Similarity=0.755  Sum_probs=6.3

Q ss_pred             HHHHHHHHhhh
Q 011939          106 ARKLAATLWEM  116 (474)
Q Consensus       106 ARKLaAtLWE~  116 (474)
                      --.+.+.||.-
T Consensus       616 ~~~~~~~lf~~  626 (1184)
T 1i84_S          616 SDKFVADLWKD  626 (1184)
T ss_dssp             SCHHHHHHHSC
T ss_pred             chHHHHHHhcc
Confidence            34566667653

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=93.50  E-value=3.5  Score=35.81  Aligned_cols=12  Identities=8%  Similarity=0.141  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHH
Q 011939          445 VDKLRSQLEAFS  456 (474)
Q Consensus       445 ldkL~~elE~FL  456 (474)
                      +.++..+++.++
T Consensus       267 ~~~~~~~~~~~~  278 (284)
T 1c1g_A          267 YKAISEELDHAL  278 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.37  E-value=1.5  Score=49.76  Aligned_cols=128  Identities=17%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             HHHhhhchhHHHHHHHHhHHHHHHhh------hhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939          289 IQEQRSDQSEISYLMKCFAEEKAAWK------NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK  362 (474)
Q Consensus       289 ~~E~~s~~~eie~l~KqlaEEK~awK------sKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~  362 (474)
                      .........+|..|-.++.++...++      ....++...-+..|+.++++..+.-...+.+.    .++.+...-+..
T Consensus       920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~----~~v~~L~~e~~~  995 (1080)
T 2dfs_A          920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT----NRVLSLQEEIAK  995 (1080)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            33344444555555555554333222      11223445556666666666555433333222    222222223333


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH-hHHHHHHhHhhh
Q 011939          363 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK-EREMIQVADVLR  423 (474)
Q Consensus       363 alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee-ER~MLqmAEvWR  423 (474)
                      .-++|++..+..+.+|+-++++-.   +.+..|..|+.+-.+++.++++ |..++..++-|.
T Consensus       996 l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A          996 LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555666655542   4445555566655555554433 335555555554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.96  E-value=1.9  Score=49.03  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHH----HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Q 011939          319 EVVEAAIESIAGELEVERKLRRRFES----LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSE  394 (474)
Q Consensus       319 eki~aai~slk~ELe~ERK~Rrr~E~----lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaE  394 (474)
                      .+....|..|...|+++.+....+..    +..++..|.++.    .+.+.++|...+...-+++...+|-.+|.+.+.+
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L----~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~  999 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL----RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE  999 (1080)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666554443333322    233444444433    2233334443333333344444444444444444


Q ss_pred             HHHHHHHh
Q 011939          395 VEELKRES  402 (474)
Q Consensus       395 Ve~LKres  402 (474)
                      +..+..+.
T Consensus      1000 ~~~~~ke~ 1007 (1080)
T 2dfs_A         1000 LHQTQTEK 1007 (1080)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.71  E-value=0.5  Score=42.50  Aligned_cols=108  Identities=14%  Similarity=0.215  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939          273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE  352 (474)
Q Consensus       273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E  352 (474)
                      .++.+|.-.+++|++|+..+.    +++.+.+.+            ..+..-+..+..+|..|+..|..+|.-..++-.|
T Consensus        12 ~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E   75 (135)
T 2e7s_A           12 KSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKE   75 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677778888888887664    333333333            2334446669999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 011939          353 LAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE  396 (474)
Q Consensus       353 LaE~Kss-~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe  396 (474)
                      |.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..++|-+.-++
T Consensus        76 lE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~  120 (135)
T 2e7s_A           76 VEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLD  120 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997655 4555555666788888888887777777766544333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.61  E-value=2.7  Score=42.81  Aligned_cols=65  Identities=9%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhh----hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939          318 REVVEAAIESIAGELEVERKLRR----RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD  382 (474)
Q Consensus       318 ~eki~aai~slk~ELe~ERK~Rr----r~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCD  382 (474)
                      .+...+.++.++.+++..+..-+    .++....+|.+++..++.-......++.+.+++-.-..+.++
T Consensus       472 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (597)
T 3oja_B          472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE  540 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence            34456677777777776655433    222333556666555555555555555544444433333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.33  E-value=4.6  Score=33.63  Aligned_cols=75  Identities=21%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh------hHHHHHHHHHHHHHHhHHHHHHhh----
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK------EREVVEAAIESIAGELEVERKLRR----  340 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERK~Rr----  340 (474)
                      |.+|+.|.+.|..++.+++.......    .-..++.+|-.+.+.|      +.|++...+......|+...+.+-    
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e----~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~   86 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAE----DRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999988877754332    2222333333222222      356777777778888888887777    


Q ss_pred             hHHHHhHHH
Q 011939          341 RFESLNKKL  349 (474)
Q Consensus       341 r~E~lN~KL  349 (474)
                      .+.+||+|+
T Consensus        87 evasLnRri   95 (101)
T 3u59_A           87 EVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            445566665

>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1

Probab=90.03  E-value=0.057  Score=46.66  Aligned_cols=39  Identities=46%  Similarity=0.663  Sum_probs=0.0

Q ss_pred             HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939          324 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK  362 (474)
Q Consensus       324 ai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~  362 (474)
                      -|+.+..||..|+=+|+++|.+|.-|++||+.+|..+..
T Consensus        64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~  102 (110)
T 2hg7_A           64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS  102 (110)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788889999999999999999999999999987643

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.82  E-value=6.9  Score=32.80  Aligned_cols=75  Identities=15%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh------hHHHHHHHHHHHHHHhHHHHHHhh----
Q 011939          271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK------EREVVEAAIESIAGELEVERKLRR----  340 (474)
Q Consensus       271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERK~Rr----  340 (474)
                      |.+|+.|.+.|..++.+++...+...    .-..++.+|-.+...|      +-|++...+......|+...+..-    
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e----~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~   86 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAE----ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999988888876654322    2222223332222211      356777777778888888887777    


Q ss_pred             hHHHHhHHH
Q 011939          341 RFESLNKKL  349 (474)
Q Consensus       341 r~E~lN~KL  349 (474)
                      .+.+||+|+
T Consensus        87 ev~~L~Rri   95 (101)
T 3u1c_A           87 EVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555666665

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.83  E-value=26  Score=32.90  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 011939          269 SLVSALHAELERARLQVNQLIQEQRSDQSEISY  301 (474)
Q Consensus       269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~  301 (474)
                      -|=..|..||+++..++++|.......+.+++.
T Consensus        42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~   74 (189)
T 2v71_A           42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEA   74 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555544443333333

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=82.86  E-value=3.6  Score=32.20  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             HHHHhHHHHHHhhhHHHHhHHHHH
Q 011939          328 IAGELEVERKLRRRFESLNKKLGK  351 (474)
Q Consensus       328 lk~ELe~ERK~Rrr~E~lN~KL~~  351 (474)
                      |+.-||.|.++|+++|.+=+|+.+
T Consensus        29 m~k~lEeEqkARk~LE~~vrk~~k   52 (56)
T 2w6b_A           29 MKKSLEEEQRARKDLEKLVRKVLK   52 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555688899999999999888843

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.71  E-value=31  Score=43.95  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939          352 ELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI  404 (474)
Q Consensus       352 ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k  404 (474)
                      +|.+....+.+.|++++.+...-+--.+++.+....+..-.+|+.+.|.++++
T Consensus      1949 ~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~ 2001 (3245)
T 3vkg_A         1949 ELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555554444444444444444444444555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.85  E-value=13  Score=37.11  Aligned_cols=67  Identities=9%  Similarity=0.078  Sum_probs=51.7

Q ss_pred             HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939          335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE  401 (474)
Q Consensus       335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKre  401 (474)
                      ..+..++.|.+-.++-.|...++.-....-.+.++.++..+.++.+-+|+-..|.+.++.+-.+.+.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (487)
T 3oja_A          412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR  478 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence            5566666777777777777777777777777788888888888888889988888888887776654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=80.98  E-value=37  Score=31.91  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=24.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 011939          361 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE  407 (474)
Q Consensus       361 ~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~re  407 (474)
                      ....++++.-.+....+|+-=.++...|.+.+++++.++.+......
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~  139 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK  139 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555566665555555555555555555544443333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00