Citrus Sinensis ID: 011942

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MASATAPTTLSLVKTAASSSLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVAV
cccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHccHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHccccEEEEccHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHcEEEEEHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEEccccEEEcccccccccccEEEccccccccccccccHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHccccccccEEcccHHHHHHHHccccccHHHHccccccccc
ccccccHHHHHHHHHHccccccccHHcccccccccccccccccccHHHHHHHHHHHHHHcccccHEEEEEcHcccccccHcccccccEEEEcccccccccccEEcccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHccHHHHHHHHHHHccccEEccccccHHHHHHHHccccccEEEcccHHHcHccHHHHHHHHHHHHccccEEEEEcHHHcccccccccHHHHHHcccEEcHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHccEEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEEEcccccccccEEccccccccccEEEEEcHHHHHHHHHHHccccEEEEEccccccccHHHcHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHcccHHHccEEccccHHHHHHHcccccHHHHcccEcccccc
masataptTLSLVKTAassslssprasflrmptsasrrlgfsaadpllTCHVASRlssiktkgTRAVVSMAKKSVgelsgadlkgkkVFVRadlnvplddnqnitddtriraAVPTIKHLIQNGAKVILSshlgrpkgvtpkfslaplvprlsellgiqvvkaddcigpEVEKLVASLPEGGVLLLENVRFykeeekndPEFAKKLASLADLYvndafgtahrahastegvtkylkpsvagFLLQKELDYLVgavsspkrpfaaivggskvssKIGVIESLLETCDILLLGGGMIFTFYKAQgisvgsslveeDKLDLATTLLAKAKAKgvnlllpsdvviadkfapdanskvvpataipdgwmgldigpdsvKTFNEALDTTKtviwngpmgvfefdkfavGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMShistgggaslellegkelpgvvaldeatpvav
masatapttlSLVKtaassslssprasflRMPTSASRRLGFSAADPLLTCHVAsrlssiktkgtraVVSMAKksvgelsgadlkgkKVFVRADlnvplddnqnitddtRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLvaslpeggvLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRahastegvtkyLKPSVAGFLLQKELDYLVGAVSSPKRpfaaivggskvsSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADkfapdanskvvPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKelpgvvaldeatpvav
MASATAPttlslvktaassslssprasFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEdkldlattllakakakGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSvaavekvgvagvMSHISTGGGASLELLEGKELPGVVALDEATPVAV
****************************************FSAADPLLTCHVASRLSSIKTKGTRAVVS********L*GADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKE******EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVV**********
**********************************************L***HV***************VSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATP***
*******************************PTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVAV
********************************************DPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEAT****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASATAPTTLSLVKTAASSSLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q42961481 Phosphoglycerate kinase, N/A no 0.993 0.979 0.855 0.0
P50318478 Phosphoglycerate kinase 2 yes no 0.970 0.962 0.859 0.0
Q9LD57481 Phosphoglycerate kinase 1 no no 1.0 0.985 0.835 0.0
P29409433 Phosphoglycerate kinase, N/A no 0.900 0.986 0.872 0.0
P12782480 Phosphoglycerate kinase, N/A no 0.987 0.975 0.828 0.0
Q42962401 Phosphoglycerate kinase, N/A no 0.839 0.992 0.856 0.0
P12783401 Phosphoglycerate kinase, N/A no 0.839 0.992 0.839 0.0
Q9SBN4462 Phosphoglycerate kinase, N/A no 0.926 0.950 0.727 1e-176
P41758461 Phosphoglycerate kinase, N/A no 0.850 0.874 0.740 1e-168
Q3MF40400 Phosphoglycerate kinase O yes no 0.843 1.0 0.745 1e-166
>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/484 (85%), Positives = 442/484 (91%), Gaps = 13/484 (2%)

Query: 1   MASATAPTTLSLVKTAASSS----LSSPRASFL-RMPTSASRRLGFS--AADPLLTCHVA 53
           MASATA  TL  +   +SS+    ++   A FL + P    RRLGF+  AAD L T HVA
Sbjct: 1   MASATASHTLCGIPATSSSTTNKAIAPSSARFLAKTPL---RRLGFAGAAADSLFTNHVA 57

Query: 54  SRLSSIKT--KGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIR 111
           ++L S+K+  K  R V SMAKKSVG+L+ A+LKGKKVFVRADLNVPLDDNQNITDDTRIR
Sbjct: 58  TKLRSLKSSSKPIRGVASMAKKSVGDLTAAELKGKKVFVRADLNVPLDDNQNITDDTRIR 117

Query: 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEV 171
           AAVPTIKHL+ NGAKVILSSHLGRPKGVTPK+SLAPLVPRLSELLGIQVVK +DCIGPEV
Sbjct: 118 AAVPTIKHLMANGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKVEDCIGPEV 177

Query: 172 EKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 231
           EKLVASLPEGGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGV
Sbjct: 178 EKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 237

Query: 232 TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLG 291
           TK+LKPSVAGFLLQKELDYLVGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLG
Sbjct: 238 TKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLG 297

Query: 292 GGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANS 351
           GGMIFTFYKAQG+SVGSSLVEEDKL+LAT+LL KAKAKGV+LLLPSDVVIADKFAPDANS
Sbjct: 298 GGMIFTFYKAQGLSVGSSLVEEDKLELATSLLEKAKAKGVSLLLPSDVVIADKFAPDANS 357

Query: 352 KVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKL 411
           K+VPA+AIPDGWMGLDIGPDSVKTFN+ALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKL
Sbjct: 358 KIVPASAIPDGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKL 417

Query: 412 ADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA-T 470
           ADLSGKGVTTIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGK LPGV+ALDEA  
Sbjct: 418 ADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEADA 477

Query: 471 PVAV 474
           PVAV
Sbjct: 478 PVAV 481

Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 3
>sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=3 Back     alignment and function description
>sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PGK1 PE=1 SV=1 Back     alignment and function description
>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2 Back     alignment and function description
>sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P12783|PGKY_WHEAT Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q9SBN4|PGKH_VOLCA Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1 Back     alignment and function description
>sp|P41758|PGKH_CHLRE Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1 Back     alignment and function description
>sp|Q3MF40|PGK_ANAVT Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
224109060481 predicted protein [Populus trichocarpa] 1.0 0.985 0.871 0.0
255544584479 phosphoglycerate kinase, putative [Ricin 0.997 0.987 0.883 0.0
357451629479 Phosphoglycerate kinase [Medicago trunca 0.995 0.985 0.860 0.0
449444282485 PREDICTED: phosphoglycerate kinase, chlo 0.940 0.919 0.890 0.0
224101335481 predicted protein [Populus trichocarpa] 1.0 0.985 0.871 0.0
297847996478 hypothetical protein ARALYDRAFT_474689 [ 0.970 0.962 0.863 0.0
118488917481 unknown [Populus trichocarpa x Populus d 1.0 0.985 0.869 0.0
2499497481 RecName: Full=Phosphoglycerate kinase, c 0.993 0.979 0.855 0.0
15223484478 phosphoglycerate kinase [Arabidopsis tha 0.970 0.962 0.859 0.0
356557028483 PREDICTED: phosphoglycerate kinase, chlo 1.0 0.981 0.865 0.0
>gi|224109060|ref|XP_002315066.1| predicted protein [Populus trichocarpa] gi|222864106|gb|EEF01237.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/481 (87%), Positives = 447/481 (92%), Gaps = 7/481 (1%)

Query: 1   MASATAPTTLSLVKTAASSSLSSPRASFLRMPTSASRR-----LGFSAADPLLTCHVASR 55
           MASATAPTTLSL+KTAASS+ +S RAS L + TS  R      LGFSAAD L + HV S+
Sbjct: 1   MASATAPTTLSLLKTAASSTSTSVRASLLPVSTSGLRTTSLRGLGFSAADTLFSSHVVSK 60

Query: 56  LSSIKTKGT--RAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 113
           + S K+ G   RAVVSMAKKSVG+L+ ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 61  IRSFKSNGKAPRAVVSMAKKSVGDLTAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 120

Query: 114 VPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 173
           +PTIK+LI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK
Sbjct: 121 IPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 180

Query: 174 LVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
           LVASLP+GGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 181 LVASLPDGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 240

Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
           +LKPSV+GFLLQKELDYLVGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLGGG
Sbjct: 241 FLKPSVSGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 300

Query: 294 MIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
           MIFTFYKAQG+ VGSSLVEEDKL LAT+LL KAKAKGV+LLLPSDV+IADKFAPDANSK+
Sbjct: 301 MIFTFYKAQGLPVGSSLVEEDKLGLATSLLEKAKAKGVSLLLPSDVIIADKFAPDANSKI 360

Query: 354 VPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLAD 413
           VPA+AIPDGWMGLDIGP+SVKTF+EAL TT+TVIWNGPMGVFEFDKFAVGTEAIAKKLA+
Sbjct: 361 VPASAIPDGWMGLDIGPESVKTFSEALGTTQTVIWNGPMGVFEFDKFAVGTEAIAKKLAE 420

Query: 414 LSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVA 473
           LSGKGVTTIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGKELPGV+ALDE   VA
Sbjct: 421 LSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEVERVA 480

Query: 474 V 474
           V
Sbjct: 481 V 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544584|ref|XP_002513353.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223547261|gb|EEF48756.1| phosphoglycerate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357451629|ref|XP_003596091.1| Phosphoglycerate kinase [Medicago truncatula] gi|355485139|gb|AES66342.1| Phosphoglycerate kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449444282|ref|XP_004139904.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] gi|449475841|ref|XP_004154567.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101335|ref|XP_002312238.1| predicted protein [Populus trichocarpa] gi|3738261|dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra] gi|222852058|gb|EEE89605.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297847996|ref|XP_002891879.1| hypothetical protein ARALYDRAFT_474689 [Arabidopsis lyrata subsp. lyrata] gi|297337721|gb|EFH68138.1| hypothetical protein ARALYDRAFT_474689 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|118488917|gb|ABK96267.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489457|gb|ABK96531.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|2499497|sp|Q42961.1|PGKH_TOBAC RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor gi|1161600|emb|CAA88841.1| phosphoglycerate kinase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|15223484|ref|NP_176015.1| phosphoglycerate kinase [Arabidopsis thaliana] gi|332278232|sp|P50318.3|PGKH2_ARATH RecName: Full=Phosphoglycerate kinase 2, chloroplastic; Flags: Precursor gi|12321760|gb|AAG50920.1|AC069159_21 phosphoglycerate kinase, putative [Arabidopsis thaliana] gi|15810505|gb|AAL07140.1| putative phosphoglycerate kinase [Arabidopsis thaliana] gi|20466264|gb|AAM20449.1| phosphoglycerate kinase, putative [Arabidopsis thaliana] gi|23198084|gb|AAN15569.1| phosphoglycerate kinase, putative [Arabidopsis thaliana] gi|332195235|gb|AEE33356.1| phosphoglycerate kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356557028|ref|XP_003546820.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2205215478 AT1G56190 [Arabidopsis thalian 0.943 0.935 0.822 4.7e-190
TAIR|locus:2087750481 PGK1 "phosphoglycerate kinase 1.0 0.985 0.771 4.4e-187
TAIR|locus:2206410401 PGK "phosphoglycerate kinase" 0.839 0.992 0.806 1.5e-168
TIGR_CMR|CHY_0281394 CHY_0281 "phosphoglycerate kin 0.827 0.994 0.552 2.3e-110
TIGR_CMR|BA_5367394 BA_5367 "phosphoglycerate kina 0.827 0.994 0.52 1.7e-105
TIGR_CMR|CJE_1589400 CJE_1589 "phosphoglycerate kin 0.805 0.955 0.501 1.5e-97
TIGR_CMR|DET_0744397 DET_0744 "phosphoglycerate kin 0.801 0.957 0.489 3.5e-91
SGD|S000000605416 PGK1 "3-phosphoglycerate kinas 0.827 0.942 0.475 5.7e-91
POMBASE|SPBC14F5.04c414 pgk1 "phosphoglycerate kinase 0.808 0.925 0.491 5.1e-90
CGD|CAL0000415417 PGK1 [Candida albicans (taxid: 0.827 0.940 0.454 1.4e-85
TAIR|locus:2205215 AT1G56190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
 Identities = 370/450 (82%), Positives = 397/450 (88%)

Query:    28 FLRMP-TSAS-RRLGFSAA-DPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLK 84
             F  +P TS S RRLGFSA  D   + HVAS++ S++ KG R V++MAKKSVG+L+  DLK
Sbjct:    29 FGHIPSTSVSARRLGFSAVVDSRFSVHVASKVHSVRGKGARGVITMAKKSVGDLNSVDLK 88

Query:    85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFS 144
             GKKVFVRADLNVPLDDNQNITDDTRIRAA+PTIK LI+NGAKVILS+HLGRPKGVTPKFS
Sbjct:    89 GKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHLGRPKGVTPKFS 148

Query:   145 LAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 204
             LAPLVPRLSELLGI+VVKADDCIGPEVE LVASLPEGGVLLLENVRFYKEEEKN+P+FAK
Sbjct:   149 LAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRFYKEEEKNEPDFAK 208

Query:   205 KLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAA 264
             KLASLADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYLVGAVS+PKRPFAA
Sbjct:   209 KLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAA 268

Query:   265 IVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEXXXXXXXXXXX 324
             IVGGSKVSSKIGVIESLLE CDILLLGGGMIFTFYKAQG+SVGSSLVEE           
Sbjct:   269 IVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATTLLA 328

Query:   325 XXXXXGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTK 384
                  GV+LLLP+DVVIADKFAPDANSK+VPA+AIPDGWMGLDIGPDSVKTFNEALDTT+
Sbjct:   329 KAKARGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQ 388

Query:   385 TVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSXXXXXXXXXXXXMSHI 444
             TVIWNGPMGVFEF+KFA GTEA+A KLA+LS KGVTTIIGGGDS            MSHI
Sbjct:   389 TVIWNGPMGVFEFEKFAKGTEAVANKLAELSKKGVTTIIGGGDSVAAVEKVGVAGVMSHI 448

Query:   445 STGGGASLELLEGKELPGVVALDEATPVAV 474
             STGGGASLELLEGK LPGVVALDEATPV V
Sbjct:   449 STGGGASLELLEGKVLPGVVALDEATPVTV 478
GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009579 "thylakoid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
TAIR|locus:2087750 PGK1 "phosphoglycerate kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206410 PGK "phosphoglycerate kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0281 CHY_0281 "phosphoglycerate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5367 BA_5367 "phosphoglycerate kinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1589 CJE_1589 "phosphoglycerate kinase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0744 DET_0744 "phosphoglycerate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
SGD|S000000605 PGK1 "3-phosphoglycerate kinase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC14F5.04c pgk1 "phosphoglycerate kinase Pgk1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0000415 PGK1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0JT86PGK_MICAN2, ., 7, ., 2, ., 30.69650.84380.9950yesno
A8G2K1PGK_PROM22, ., 7, ., 2, ., 30.69150.84380.9950yesno
Q67SW6PGK_SYMTH2, ., 7, ., 2, ., 30.62170.79740.9642yesno
P12782PGKH_WHEAT2, ., 7, ., 2, ., 30.82800.98730.975N/Ano
P12783PGKY_WHEAT2, ., 7, ., 2, ., 30.83910.83960.9925N/Ano
B2ITU1PGK_NOSP72, ., 7, ., 2, ., 30.73710.81850.97yesno
Q7U3V0PGK_SYNPX2, ., 7, ., 2, ., 30.71320.84380.9950yesno
B8HXQ5PGK_CYAP42, ., 7, ., 2, ., 30.73390.84380.9852yesno
Q9SBN4PGKH_VOLCA2, ., 7, ., 2, ., 30.72740.92610.9502N/Ano
C0Z6L6PGK_BREBN2, ., 7, ., 2, ., 30.60550.82060.9873yesno
Q9LD57PGKH1_ARATH2, ., 7, ., 2, ., 30.83571.00.9854nono
Q8YPR1PGK_NOSS12, ., 7, ., 2, ., 30.740.84381.0yesno
A2BUH2PGK_PROM52, ., 7, ., 2, ., 30.67330.84170.9925yesno
Q5N4Z6PGK_SYNP62, ., 7, ., 2, ., 30.71320.84380.9950yesno
Q8KAE1PGK_CHLTE2, ., 7, ., 2, ., 30.58250.83540.9974yesno
A2CDG7PGK_PROM32, ., 7, ., 2, ., 30.70320.84380.9975yesno
Q10Z46PGK_TRIEI2, ., 7, ., 2, ., 30.70.83540.9949yesno
A2C025PGK_PROM12, ., 7, ., 2, ., 30.67080.84380.9975yesno
A5GW73PGK_SYNR32, ., 7, ., 2, ., 30.71320.84380.9950yesno
B4S6S2PGK_PROA22, ., 7, ., 2, ., 30.56750.83540.9974yesno
Q2JKX6PGK_SYNJB2, ., 7, ., 2, ., 30.67710.84380.9708yesno
B7K9Q5PGK_CYAP72, ., 7, ., 2, ., 30.71570.84380.9975yesno
Q8DGP7PGK_THEEB2, ., 7, ., 2, ., 30.70750.84381.0yesno
Q3AGU1PGK_SYNSC2, ., 7, ., 2, ., 30.71320.84380.9975yesno
Q0I6M5PGK_SYNS32, ., 7, ., 2, ., 30.71570.84380.9950yesno
Q46HH8PGK_PROMT2, ., 7, ., 2, ., 30.66580.84380.9975yesno
Q42961PGKH_TOBAC2, ., 7, ., 2, ., 30.85530.99360.9792N/Ano
Q42962PGKY_TOBAC2, ., 7, ., 2, ., 30.85670.83960.9925N/Ano
B7JVE4PGK_CYAP82, ., 7, ., 2, ., 30.710.83960.995yesno
Q3AVX6PGK_SYNS92, ., 7, ., 2, ., 30.70820.84380.9975yesno
A3PAR3PGK_PROM02, ., 7, ., 2, ., 30.68150.84380.9950yesno
A5GPB2PGK_SYNPW2, ., 7, ., 2, ., 30.71070.84380.9950yesno
Q31CY6PGK_PROM92, ., 7, ., 2, ., 30.69400.84380.9950yesno
Q31P73PGK_SYNE72, ., 7, ., 2, ., 30.71820.84380.9950yesno
P74421PGK_SYNY32, ., 7, ., 2, ., 30.720.83960.9925N/Ano
B0CD95PGK_ACAM12, ., 7, ., 2, ., 30.71070.84380.9975yesno
B1XNQ1PGK_SYNP22, ., 7, ., 2, ., 30.70820.83750.9974yesno
Q2JXF0PGK_SYNJA2, ., 7, ., 2, ., 30.68440.84380.9708yesno
Q7V390PGK_PROMP2, ., 7, ., 2, ., 30.68150.84380.9950yesno
B3QLX7PGK_CHLP82, ., 7, ., 2, ., 30.57750.83540.9974yesno
P41758PGKH_CHLRE2, ., 7, ., 2, ., 30.74070.85020.8741N/Ano
B7GL27PGK_ANOFW2, ., 7, ., 2, ., 30.5950.82700.9949yesno
B3EQD1PGK_CHLPB2, ., 7, ., 2, ., 30.5750.83540.9974yesno
Q7VDZ4PGK_PROMA2, ., 7, ., 2, ., 30.70250.84170.9925yesno
A9BDF8PGK_PROM42, ., 7, ., 2, ., 30.68750.84170.9925yesno
P50318PGKH2_ARATH2, ., 7, ., 2, ., 30.85960.97040.9623yesno
A2BNZ0PGK_PROMS2, ., 7, ., 2, ., 30.69400.84380.9950yesno
Q3MF40PGK_ANAVT2, ., 7, ., 2, ., 30.7450.84381.0yesno
P29409PGKH_SPIOL2, ., 7, ., 2, ., 30.87200.90080.9861N/Ano
Q7V461PGK_PROMM2, ., 7, ., 2, ., 30.70320.84380.9975yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.2.30.994
3rd Layer5.3.1.10.824
3rd Layer5.3.10.766
3rd Layer2.7.20.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_X0655
phosphoglycerate kinase (481 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_I1744
triose-phosphate isomerase (EC-5.3.1.1) (255 aa)
•••• •• 0.965
estExt_Genewise1_v1.C_LG_X2172
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (256 aa)
•••• •• 0.964
grail3.0049021504
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)
•••• •• 0.964
estExt_Genewise1_v1.C_LG_IV0988
hypothetical protein (256 aa)
•••• •• 0.964
eugene3.00091331
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (264 aa)
•••• •• 0.957
G3pdh
hypothetical protein (328 aa)
•  • •• 0.954
estExt_Genewise1_v1.C_LG_IX1362
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (315 aa)
•••  •• 0.947
estExt_Genewise1_v1.C_LG_XII1463
SubName- Full=Putative uncharacterized protein; (338 aa)
•  • •• 0.945
estExt_Genewise1_v1.C_LG_I2848
hypothetical protein (338 aa)
•  • •• 0.945
eugene3.00150702
SubName- Full=Putative uncharacterized protein; (338 aa)
•  • •• 0.944

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
PLN03034481 PLN03034, PLN03034, phosphoglycerate kinase; Provi 0.0
PLN02282401 PLN02282, PLN02282, phosphoglycerate kinase 0.0
PRK00073389 PRK00073, pgk, phosphoglycerate kinase; Provisiona 0.0
pfam00162383 pfam00162, PGK, Phosphoglycerate kinase 0.0
cd00318397 cd00318, Phosphoglycerate_kinase, Phosphoglycerate 0.0
COG0126395 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr 0.0
PRK13962 645 PRK13962, PRK13962, bifunctional phosphoglycerate 0.0
PTZ00005417 PTZ00005, PTZ00005, phosphoglycerate kinase; Provi 1e-164
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional Back     alignment and domain information 
 Score =  831 bits (2148), Expect = 0.0
 Identities = 422/481 (87%), Positives = 453/481 (94%), Gaps = 7/481 (1%)

Query: 1   MASATAPTTLSLVK-TAASSSLSSPRASFL-----RMPTSASRRLGFSAA-DPLLTCHVA 53
           MASA APT LSL+K TAA++S ++ RAS L      +  ++ RRLGFSAA D   + HVA
Sbjct: 1   MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRLGFSAAADSRFSVHVA 60

Query: 54  SRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 113
           S++ S + KG+R VVSMAKKSVG+L+ ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 61  SKVRSFRGKGSRGVVSMAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 120

Query: 114 VPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 173
           +PTIK+LI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK
Sbjct: 121 IPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK 180

Query: 174 LVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
           LVASLPEGGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 181 LVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 240

Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
           +LKPSVAGFLLQKELDYLVGAVS+PKRPFAAIVGGSKVSSKIGVIESLLE CDILLLGGG
Sbjct: 241 FLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 300

Query: 294 MIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV 353
           MIFTFYKAQG+SVGSSLVEEDKL+LAT+LLAKAKAKGV+LLLP+DVVIADKFAPDANSK+
Sbjct: 301 MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKI 360

Query: 354 VPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLAD 413
           VPA+AIPDGWMGLDIGPDSVKTFNEALDTT+TVIWNGPMGVFEF+KFAVGTEA+AKKLA+
Sbjct: 361 VPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAE 420

Query: 414 LSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVA 473
           LSGKGVTTIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGKELPGVVALDEATPVA
Sbjct: 421 LSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPVA 480

Query: 474 V 474
           V
Sbjct: 481 V 481

Length = 481
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase Back     alignment and domain information
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase Back     alignment and domain information
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate Back     alignment and domain information
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
PLN03034481 phosphoglycerate kinase; Provisional 100.0
PLN02282401 phosphoglycerate kinase 100.0
COG0126395 Pgk 3-phosphoglycerate kinase [Carbohydrate transp 100.0
cd00318397 Phosphoglycerate_kinase Phosphoglycerate kinase (P 100.0
PRK00073389 pgk phosphoglycerate kinase; Provisional 100.0
PTZ00005417 phosphoglycerate kinase; Provisional 100.0
KOG1367416 consensus 3-phosphoglycerate kinase [Carbohydrate 100.0
PRK13962 645 bifunctional phosphoglycerate kinase/triosephospha 100.0
PF00162384 PGK: Phosphoglycerate kinase; InterPro: IPR001576 100.0
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 90.48
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 87.88
>PLN03034 phosphoglycerate kinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.2e-156  Score=1218.86  Aligned_cols=473  Identities=87%  Similarity=1.245  Sum_probs=435.0

Q ss_pred             CCCCCCccccccccccccc--------cccCCCcccccCCcccccccccCcCCcchhhhhhhhhhhcccccchhhhhccc
Q 011942            1 MASATAPTTLSLVKTAASS--------SLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAK   72 (474)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (474)
                      |+++++|+.+++...++.+        +..++++.+++..+++.++|. +++++..+.+.+.+++..+.........|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~   79 (481)
T PLN03034          1 MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRLGFS-AAADSRFSVHVASKVRSFRGKGSRGVVSMAK   79 (481)
T ss_pred             CccccccchhhhhhhhhhhhhhccccccccccccccccccCccccchh-cccCccchhhhhhhhccchhcCcchhhhccc
Confidence            7787877777765333211        122234555555666665443 3578888888888877763333333335667


Q ss_pred             ccccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHH
Q 011942           73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRL  152 (474)
Q Consensus        73 ~si~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~L  152 (474)
                      ++++|+++.|++|||||||||||||+|++|+|+||+||++++||||||+++||||||+||||||+++++++||+|||++|
T Consensus        80 ~tl~d~~~~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~L  159 (481)
T PLN03034         80 KSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRL  159 (481)
T ss_pred             CcHhhcchhhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHHH
Confidence            78888887899999999999999999866899999999999999999999999999999999999877799999999999


Q ss_pred             HHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccc
Q 011942          153 SELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVT  232 (474)
Q Consensus       153 s~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~  232 (474)
                      +++||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+|+||+++|||||||||++||+|||++|||
T Consensus       160 s~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~haS~vGi~  239 (481)
T PLN03034        160 SELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVT  239 (481)
T ss_pred             HHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCcHHHHHHHHhhCCEEEecchhhhHhcccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccc
Q 011942          233 KYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVE  312 (474)
Q Consensus       233 ~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE  312 (474)
                      +|++|+|+||||||||++|.+++++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|++|
T Consensus       240 ~~l~ps~aG~LmekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE  319 (481)
T PLN03034        240 KFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVE  319 (481)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcC
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcc
Q 011942          313 EDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPM  392 (474)
Q Consensus       313 ~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPm  392 (474)
                      ++.++.|++|+++++++|++|+||+||+|+++|+.++++++++.++||+|||++||||+|++.|+++|++|+||||||||
T Consensus       320 ~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WNGPm  399 (481)
T PLN03034        320 EDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPM  399 (481)
T ss_pred             hhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCc
Confidence            99999999999999999999999999999999988888888899999999999999999999999999999999999999


Q ss_pred             cccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccccCCC
Q 011942          393 GVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPV  472 (474)
Q Consensus       393 GvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~~~  472 (474)
                      ||||+++|+.||++|+++|++.++++++||||||||++|++++|+.++||||||||||+|||||||+||||++|+++|||
T Consensus       400 GvFE~~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~~~  479 (481)
T PLN03034        400 GVFEFEKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPV  479 (481)
T ss_pred             ccccCCcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCccceeEEeCcHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence            99999999999999999999987778999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 011942          473 AV  474 (474)
Q Consensus       473 ~~  474 (474)
                      +|
T Consensus       480 ~~  481 (481)
T PLN03034        480 AV  481 (481)
T ss_pred             cC
Confidence            86

>PLN02282 phosphoglycerate kinase Back     alignment and domain information
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate Back     alignment and domain information
>PRK00073 pgk phosphoglycerate kinase; Provisional Back     alignment and domain information
>PTZ00005 phosphoglycerate kinase; Provisional Back     alignment and domain information
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2 Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
1php_A394 Structure Of The Adp Complex Of The 3-Phosphoglycer 1e-116
1vpe_A398 Crystallographic Analysis Of Phosphoglycerate Kinas 1e-114
3uwd_A394 Crystal Structure Of Phosphoglycerate Kinase From B 1e-105
3q3v_A403 Crystal Structure Of Phosphoglycerate Kinase From C 1e-100
1vjc_A416 Structure Of Pig Muscle Pgk Complexed With Mgatp Le 6e-98
2zgv_A420 Crystal Structure Of Human Phosphoglycerate Kinase 7e-98
2wzb_A416 The Catalytically Active Fully Closed Conformation 8e-98
2y3i_A416 The Structure Of The Fully Closed Conformation Of H 8e-98
2xe6_A417 The Complete Reaction Cycle Of Human Phosphoglycera 1e-97
2p9q_A416 Crystal Structure Of Phosphoglycerate Kinase-2 Leng 3e-97
2x14_A416 The Catalytically Active Fully Closed Conformation 3e-97
2wzd_A417 The Catalytically Active Fully Closed Conformation 4e-97
1qpg_A415 3-Phosphoglycerate Kinase, Mutation R65q Length = 4 2e-96
1kf0_A416 Crystal Structure Of Pig Muscle Phosphoglycerate Ki 4e-96
3pgk_A416 The Structure Of Yeast Phosphoglycerate Kinase At 0 6e-95
4dg5_A403 Crystal Structure Of Staphylococcal Phosphoglycerat 2e-94
3oz7_A417 Crystal Structure Of 3-Phosphopglycerate Kinase Of 1e-93
1hdi_A413 Pig Muscle 3-Phosphoglycerate Kinase Complexed With 7e-92
1v6s_A390 Crystal Structure Of Phosphoglycerate Kinase From T 5e-91
2ie8_A390 Crystal Structure Of Thermus Caldophilus Phosphogly 7e-91
3oza_A424 Crystal Structure Of Plasmodium Falciparum 3-Phosph 2e-90
1ltk_A425 Crystal Structure Of Phosphoglycerate Kinase From P 2e-90
13pk_A415 Ternary Complex Of Phosphoglycerate Kinase From Try 5e-89
4fey_A395 An X-Ray Structure Of A Putative Phosphogylcerate K 2e-81
1fw8_A416 Circularly Permuted Phosphoglycerate Kinase From Ye 3e-80
4ehj_A392 An X-Ray Structure Of A Putative Phosphogylcerate K 5e-80
1zmr_A387 Crystal Structure Of The E. Coli Phosphoglycerate K 7e-77
2cun_A410 Crystal Structure Of Phosphoglycerate Kinase From P 4e-51
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/400 (55%), Positives = 278/400 (69%), Gaps = 8/400 (2%)
Query: 70  MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
           M KK++ ++   D++GK+VF R D NVP++    ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1   MNKKTIRDV---DVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVIL 56
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
           +SHLGRPKG V  +  L  +  RL ELL   V K ++ +G EV+  V  L EG VLLLEN
Sbjct: 57  ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
           VRFY  EEKNDPE AK  A LADLYVNDAFG AHRAHASTEG+  YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
           + L  A+S+P RPF AI+GG+KV  KIGVI++LLE  D L++GGG+ +TF KA G  VG 
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235
Query: 309 SLVEEXXXXXXXXXXXXXXXXGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDI 368
           SL+EE                GV   +P DVV+AD+FA DAN+KVVP  AIP  W  LDI
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDI 295
Query: 369 GPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS 428
           GP + + + + +  +K V+WNGPMGVFE D FA GT+AIA+ LA        ++IGGGDS
Sbjct: 296 GPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALA--EALDTYSVIGGGDS 353
Query: 429 XXXXXXXXXXXXMSHISTGGGASLELLEGKELPGVVALDE 468
                       M HISTGGGASLE +EGK+LPGVVAL++
Sbjct: 354 AAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393
>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From The Hyperthermophilic Bacterium Thermotoga Maritima Length = 398 Back     alignment and structure
>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus Anthracis Length = 394 Back     alignment and structure
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Campylobacter Jejuni. Length = 403 Back     alignment and structure
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp Length = 416 Back     alignment and structure
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound To D-Adp Length = 420 Back     alignment and structure
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride Length = 416 Back     alignment and structure
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium Tetrafluoride Length = 416 Back     alignment and structure
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate Kinase: The Open Binary Complex With 3pg Length = 417 Back     alignment and structure
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Length = 416 Back     alignment and structure
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Amp-Pcp And 3pg Length = 416 Back     alignment and structure
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Adp, 3pg And Aluminium Trifluoride Length = 417 Back     alignment and structure
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q Length = 415 Back     alignment and structure
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase Ternary Complex With Amp-Pcp And 3pg Length = 416 Back     alignment and structure
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Resolution Length = 416 Back     alignment and structure
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate Kinase Length = 403 Back     alignment and structure
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of Plasmodium Falciparum Length = 417 Back     alignment and structure
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg And Mgadp Length = 413 Back     alignment and structure
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus Thermophilus Hb8 Length = 390 Back     alignment and structure
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate Kinase In The Open Conformation Length = 390 Back     alignment and structure
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum 3-Phosphoglycerate Kinase Length = 424 Back     alignment and structure
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Plasmodium Falciparum, In The Open Conformation Length = 425 Back     alignment and structure
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma Brucei Length = 415 Back     alignment and structure
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase With Bound Adp From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 395 Back     alignment and structure
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast: Pgk P72 Length = 416 Back     alignment and structure
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 392 Back     alignment and structure
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase Length = 387 Back     alignment and structure
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Pyrococcus Horikoshii Ot3 Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3q3v_A403 Phosphoglycerate kinase; structural genomics, cent 0.0
1php_A394 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac 0.0
1vpe_A398 Phosphoglycerate kinase; transferase, hyperthermos 0.0
1v6s_A390 Phosphoglycerate kinase; riken structu genomics/pr 0.0
16pk_A415 PGK, 3-phosphoglycerate kinase; ternary complex, g 0.0
3oz7_A417 Phosphoglycerate kinase; transferase, ATP binding, 0.0
4fey_A395 Phosphoglycerate kinase; structural genomics, niai 0.0
1qpg_A415 PGK, 3-phosphoglycerate kinase; phosphotransferase 0.0
1zmr_A387 Phosphoglycerate kinase; transferase, glycolysis; 0.0
2wzb_A416 Phosphoglycerate kinase 1; hereditary hemolytic an 0.0
2cun_A410 Phosphoglycerate kinase; structural genomics, tanp 0.0
1fw8_A416 PGK P72, phosphoglycerate kinase; phosphotransfera 0.0
1fw8_A416 PGK P72, phosphoglycerate kinase; phosphotransfera 7e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403 Back     alignment and structure
 Score =  719 bits (1858), Expect = 0.0
 Identities = 204/402 (50%), Positives = 268/402 (66%), Gaps = 5/402 (1%)

Query: 69  SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
           S A   +  +   DL  KKVF+R D NVP DD  NITDD RIR+A+PTI++ + NG  VI
Sbjct: 1   SNAMSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60

Query: 129 LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
           L+SHLGRPK ++ K+SL P+  RL+ LL  ++V A D IG + +    +L  G +LLLEN
Sbjct: 61  LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLEN 120

Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL--KPSVAGFLLQK 246
           +RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E +TK+   K   AGFLLQK
Sbjct: 121 LRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180

Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
           E+D+    +  P RPF A+VGGSKVS K+  + +LL   D L++GGGM FTF KA G  +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDI 240

Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGL 366
           G+SL+EE+ L+ A  +L K K  GV + LP DVV A   + D   K VPA  IP+GWMGL
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGL 300

Query: 367 DIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGG 426
           DIGP SV+ F E +   +T+ WNGPMGVFE DKF+ G+  ++  +++      T+++GGG
Sbjct: 301 DIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISE---GHATSVVGGG 357

Query: 427 DSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
           D+   V + G A  M+ ISTGGGASLEL+EGKELPGV AL  
Sbjct: 358 DTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRS 399
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394 Back     alignment and structure
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398 Back     alignment and structure
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390 Back     alignment and structure
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415 Back     alignment and structure
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417 Back     alignment and structure
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395 Back     alignment and structure
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415 Back     alignment and structure
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387 Back     alignment and structure
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416 Back     alignment and structure
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410 Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
1vpe_A398 Phosphoglycerate kinase; transferase, hyperthermos 100.0
1php_A394 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac 100.0
3q3v_A403 Phosphoglycerate kinase; structural genomics, cent 100.0
1v6s_A390 Phosphoglycerate kinase; riken structu genomics/pr 100.0
16pk_A415 PGK, 3-phosphoglycerate kinase; ternary complex, g 100.0
1qpg_A415 PGK, 3-phosphoglycerate kinase; phosphotransferase 100.0
3oz7_A417 Phosphoglycerate kinase; transferase, ATP binding, 100.0
4fey_A395 Phosphoglycerate kinase; structural genomics, niai 100.0
2wzb_A416 Phosphoglycerate kinase 1; hereditary hemolytic an 100.0
1zmr_A387 Phosphoglycerate kinase; transferase, glycolysis; 100.0
2cun_A410 Phosphoglycerate kinase; structural genomics, tanp 100.0
1fw8_A416 PGK P72, phosphoglycerate kinase; phosphotransfera 100.0
1fw8_A416 PGK P72, phosphoglycerate kinase; phosphotransfera 99.83
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Back     alignment and structure
Probab=100.00  E-value=9.5e-154  Score=1180.91  Aligned_cols=391  Identities=58%  Similarity=0.945  Sum_probs=381.3

Q ss_pred             CccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHHHH
Q 011942           77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSEL  155 (474)
Q Consensus        77 ~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg-~~~~~SL~pva~~Ls~l  155 (474)
                      +|+|+|++||||||||||||||++ |+|+||+||++++|||+||+++||||||+||||||+| +++++||+|||++|+++
T Consensus         4 ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~a~lpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~l   82 (398)
T 1vpe_A            4 TIRDVDLKGKRVIMRVDFNVPVKD-GVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSEL   82 (398)
T ss_dssp             BGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHH
T ss_pred             cccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCcCCccCHHHHHHHHHHH
Confidence            455569999999999999999984 8999999999999999999999999999999999998 67899999999999999


Q ss_pred             hCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccccc
Q 011942          156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL  235 (474)
Q Consensus       156 L~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l  235 (474)
                      ||++|+|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||||||||||||||+||||+||++|+
T Consensus        83 Lg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~l  162 (398)
T 1vpe_A           83 LGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI  162 (398)
T ss_dssp             HTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGTS
T ss_pred             HCCCceeCCCCCCHHHHHHHhcCCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc
Q 011942          236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK  315 (474)
Q Consensus       236 ~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~  315 (474)
                       |+||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|++.
T Consensus       163 -ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~  241 (398)
T 1vpe_A          163 -PSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDK  241 (398)
T ss_dssp             -CEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGG
T ss_pred             -hhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhh
Confidence             7899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEe-CCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcccc
Q 011942          316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVP-ATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGV  394 (474)
Q Consensus       316 ~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~-~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGv  394 (474)
                      ++.|++||++|+++|++|+||+|++|+++|+.++++++++ .++||+|||++||||+|++.|+++|++||||||||||||
T Consensus       242 ~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmGv  321 (398)
T 1vpe_A          242 IDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGV  321 (398)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSC
T ss_pred             HHHHHHHHHHHHhcCCEEECCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCCEEEEECCccc
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             cCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccc
Q 011942          395 FEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA  469 (474)
Q Consensus       395 fE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~  469 (474)
                      ||+++|++||++++++++++++.+++||||||||++|++++|+.|+||||||||||||||||||+||||++|+++
T Consensus       322 FE~~~Fa~GT~~va~aia~~t~~~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~  396 (398)
T 1vpe_A          322 FEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIK  396 (398)
T ss_dssp             TTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             ccCchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCcCCccEEeCChHHHHHHHcCCCCcHHHHHHhc
Confidence            999999999999999999986556799999999999999999999999999999999999999999999999864
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Back     alignment and structure
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0 Back     alignment and structure
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Back     alignment and structure
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Back     alignment and structure
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Back     alignment and structure
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A Back     alignment and structure
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Back     alignment and structure
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Back     alignment and structure
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Back     alignment and structure
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Back     alignment and structure
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d1phpa_394 c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st 1e-150
d1qpga_415 c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea 1e-139
d1ltka_417 c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par 1e-139
d1hdia_413 c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc 1e-138
d1vpea_398 c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga 1e-138
d1v6sa_390 c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the 1e-128
d16pka_415 c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma 1e-119
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  432 bits (1111), Expect = e-150
 Identities = 237/400 (59%), Positives = 299/400 (74%), Gaps = 8/400 (2%)

Query: 70  MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
           M KK++ ++   D++GK+VF R D NVP++    ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1   MNKKTIRDV---DVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVIL 56

Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
           +SHLGRPKG V  +  L  +  RL ELL   V K ++ +G EV+  V  L EG VLLLEN
Sbjct: 57  ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116

Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
           VRFY  EEKNDPE AK  A LADLYVNDAFG AHRAHASTEG+  YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175

Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
           + L  A+S+P RPF AI+GG+KV  KIGVI++LLE  D L++GGG+ +TF KA G  VG 
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235

Query: 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDI 368
           SL+EEDK++LA + + KAK KGV   +P DVV+AD+FA DAN+KVVP  AIP  W  LDI
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDI 295

Query: 369 GPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS 428
           GP + + + + +  +K V+WNGPMGVFE D FA GT+AIA+ LA+       ++IGGGDS
Sbjct: 296 GPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALDT--YSVIGGGDS 353

Query: 429 VAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
            AAVEK G+A  M HISTGGGASLE +EGK+LPGVVAL++
Sbjct: 354 AAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415 Back     information, alignment and structure
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417 Back     information, alignment and structure
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398 Back     information, alignment and structure
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390 Back     information, alignment and structure
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1v6sa_390 Phosphoglycerate kinase {Thermus thermophilus [Tax 100.0
d1phpa_394 Phosphoglycerate kinase {Bacillus stearothermophil 100.0
d1vpea_398 Phosphoglycerate kinase {Thermotoga maritima [TaxI 100.0
d1qpga_415 Phosphoglycerate kinase {Baker's yeast (Saccharomy 100.0
d16pka_415 Phosphoglycerate kinase {Trypanosoma brucei [TaxId 100.0
d1ltka_417 Phosphoglycerate kinase {Malaria parasite (Plasmod 100.0
d1hdia_413 Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 100.0
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.4e-140  Score=1085.16  Aligned_cols=389  Identities=51%  Similarity=0.819  Sum_probs=379.9

Q ss_pred             ccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH
Q 011942           75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE  154 (474)
Q Consensus        75 i~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~  154 (474)
                      +++|+|+|++|||||||+|||||++ +|+|+||+||++++|||+||+++||||||+||||||+|.++++||+||+++|++
T Consensus         1 mktl~d~~~~~k~Vl~R~D~NvPi~-~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~   79 (390)
T d1v6sa_           1 MRTLLDLDPKGKRVLVRVDYNVPVQ-DGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRA   79 (390)
T ss_dssp             CCBGGGSCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHH
T ss_pred             CCchhhcCCCCCEEEEEeccCCCcc-CCeECChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCcccHHHHHHHHHh
Confidence            3667778999999999999999997 589999999999999999999999999999999999998889999999999999


Q ss_pred             HhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccccc
Q 011942          155 LLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKY  234 (474)
Q Consensus       155 lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~  234 (474)
                      +|+++|.|++||+|++++++++.|++|||+||||+|||+||++|+++|+++||+++|+|||||||||||+|||++|||+|
T Consensus        80 ~l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~  159 (390)
T d1v6sa_          80 HLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARL  159 (390)
T ss_dssp             HCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGT
T ss_pred             hcccceeeeeccccccccccccccccccEEeehhhhhcccccccchHHHHhhhhcCceEEecchhhhhhhccccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 011942          235 LKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEED  314 (474)
Q Consensus       235 l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~  314 (474)
                      + |+|||+||||||++|.+++++|+||+++|+||+||||||++|++|+++||+|++||+||||||+|+|++||+|++|++
T Consensus       160 l-ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~  238 (390)
T d1v6sa_         160 L-PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED  238 (390)
T ss_dssp             S-CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG
T ss_pred             h-hhhhHHHHHHHHHHHHHHHhhccCceEEEEecccccchHHHHHHHHHhcceeeecccHHHHHHHHcCCccCcchhhhh
Confidence            8 689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcccc
Q 011942          315 KLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGV  394 (474)
Q Consensus       315 ~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGv  394 (474)
                      .++.++++++.+++++++|++|+|++|+.++..+.++.++++++||++|+++||||+|++.|+++|++|||||||||||+
T Consensus       239 ~~~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGv  318 (390)
T d1v6sa_         239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGV  318 (390)
T ss_dssp             GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSC
T ss_pred             hhhhhHhHHHhhhhhccccccccceeecccccCCccccccchhhhhhhhhhhhhhhhhhHHHHHHhcccceEEEEccccc
Confidence            99999999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             cCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccc
Q 011942          395 FEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALD  467 (474)
Q Consensus       395 fE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~  467 (474)
                      ||+++|++||.+|+++|+++  ++++||||||||++|++++|+.++||||||||||+||||||++||||++|+
T Consensus       319 fE~~~F~~GT~~i~~aia~~--~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~  389 (390)
T d1v6sa_         319 FEVPPFDEGTLAVGQAIAAL--EGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE  389 (390)
T ss_dssp             TTSTTTTHHHHHHHHHHHTC--SSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTC
T ss_pred             cccCchhHHHHHHHHHHHhc--CCCEEEEeCHHHHHHHHHcCCcCCCcEEeCCHHHHHHHHCCCCccchhhhc
Confidence            99999999999999999865  368999999999999999999999999999999999999999999999996
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure