Citrus Sinensis ID: 011986

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MATTAPVSLTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSVSRPRKWIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQNGFSSSPAAVTSREDVPNLLKK
Secondary Structure (PSIPRED)
cccccccEEEEccHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccHEccccccccccccccccEEEEEEEcEEccccccEHHHccccccccEEEccccccccccccccccccccccEEEEEcccccEEEEEccccccccHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccEEccHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccHHcccccccccEcccHHHHHHHHcc
Coil and Loop (DISEMBL)
MATTAPVSLTLSRWstkiasdcstadlctvpsnssificcqchyvnrphftasalhdsdfssvtctksvsrprkwidsdtacsskpntvaycnskndvtsvsnskdgvrARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVyasnipvikeveaitdpsaFTVVRFALsaipfipfvlrarddvhtrnagFELGLWVSLGYLMQALgletsdagrASFISMFTVIVVPLldgmlgaivPARTWFGAVMSILGVALlessgsppsvgDLLNFLSAVFFGIHMLRTehisrstnkkdflpllGYEVCVIALLSAVWYFIGgslggtqgsdpsswtwTMFWDWmvafpwipalyTGIFSTGLCLWIEMAAMRDVSATETAIIYglepvwgagFAWFILGERWGATGWLGAALVLVGSLTVQifgssspsncnedekrSKKADQKLElnkqngfssspaavtsredvpnllkk
Flexible Loop (DISEMBL)
mattapvsltlsrwsTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTasalhdsdfssvtctksvsrprkwidsdtacsskpntvaycnskndvtsvsnskdgvrarsfkslfgkrsvwrRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGssspsncnedekRSKKADQKLelnkqngfssspaavtsredvpnllkk
Low Complexity Region (SEG)
MATTAPVSLTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSVSRPRKWIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQNGFSSSPAAVTSREDVPNLLKK
Disordered region (IsUnstruct)
********LTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSV****KWI************VAYC******************RSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESS***PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG************************************************
Disordered Region (DISOPRED)
****APV*LTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNR*********DSDFSSVTCTKSV************************************************************SKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV**********************************************PN****
Disordered Region (DISEMBL)
MATTAPVSLTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSVSRPRKWIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG*****************DQKLELNKQ**********************
Disordered Region (DISPRO)
*****PVSLTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSVS****WIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS*******************LELNKQNGFSSSPAAVTSREDVPNLLKK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTAPVSLTLSRWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSVSRPRKWIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQNGFSSSPAAVTSREDVPNLLKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
O29470	308	Uncharacterized transport	yes	no	0.564	0.866	0.251	5e-11

>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 27/294 (9%)

Query: 131 KKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHT 190
           K++ + + L  + +++ S  PV+K       P AF  VRF ++ + F+PF L+  D    
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPF-LKGWD---- 93

Query: 191 RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGA-IVPARTWFG 249
              GF++G+   LGY  Q +GL+ + A  A FI+   V++ P++  ++   +   R   G
Sbjct: 94  FKDGFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVSG 153

Query: 250 AVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVC 309
            +++ +G   L S  S  ++GD+L    A+FFG  +    H SR +N      L  ++  
Sbjct: 154 VLLAFVGFYFL-SGYSGFNIGDILMLFCALFFGAEIAMISHYSRLSNPT---MLAFWQSF 209

Query: 310 VIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEM 369
            I +LSA +               + +T T F         +  L T  F+T +   ++ 
Sbjct: 210 AIFILSAPF---------------AVFTTTKFEINTTVI--LCLLITAFFATFVAKMLQN 252

Query: 370 AAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423
                  +++ A+I  LE V+   F+  +L E      + GA L+L+  + V +
Sbjct: 253 WLQSYTKSSDAAVILSLEGVFAHLFSVAVLAEILTPVQYFGAFLILLAVIIVSL 306

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
255570144	458	conserved hypothetical protein [Ricinus	0.841	0.868	0.723	1e-167
225424254	460	PREDICTED: uncharacterized transporter A	0.797	0.819	0.738	1e-160
225456145	461	PREDICTED: uncharacterized protein LOC10	0.788	0.809	0.683	1e-144
449520623	452	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.816	0.853	0.615	1e-136
449449134	464	PREDICTED: uncharacterized protein LOC10	0.932	0.950	0.548	1e-136
224111492	315	predicted protein [Populus trichocarpa]	0.661	0.993	0.767	1e-134
411113259	440	integral membrane protein [Triticum aest	0.803	0.863	0.581	1e-123
326490417	430	predicted protein [Hordeum vulgare subsp	0.799	0.879	0.581	1e-123
411113263	440	integral membrane protein [Triticum urar	0.803	0.863	0.581	1e-122
411113253	440	integral membrane protein [Triticum aest	0.803	0.863	0.578	1e-122

>gi|255570144|ref|XP_002526034.1| conserved hypothetical protein [Ricinus communis] gi|223534681|gb|EEF36374.1| conserved hypothetical protein [Ricinus communis]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/401 (72%), Positives = 334/401 (83%), Gaps = 3/401 (0%)

Query: 73  RKWIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKK 132
           RK  +   + S K ++    ++KND+   S  +   R  S K+LFG++S+W+RI+FAS K
Sbjct: 61  RKSTNLHISPSEKRSSRIGIDAKNDIVFGSQKR---RIPSLKALFGRKSLWKRIVFASTK 117

Query: 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRN 192
           VRSIILLN ITVVYASNIPV+KEVEAI DP+ FTVVRFA+SAIPFIPFV +AR DV TRN
Sbjct: 118 VRSIILLNVITVVYASNIPVVKEVEAIMDPATFTVVRFAVSAIPFIPFVFQARGDVKTRN 177

Query: 193 AGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVM 252
           AG ELG WVSLGYL QALGL TSDAGRASFISMFTVI+VPLLDGMLGA+VPARTWFGA+M
Sbjct: 178 AGIELGFWVSLGYLTQALGLMTSDAGRASFISMFTVILVPLLDGMLGAVVPARTWFGALM 237

Query: 253 SILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIA 312
           SI+GVA+LE SGSPP++GDLLNFLSAVFFGIHMLRTEH+SRSTN+K+FLPLLGYEVCV+A
Sbjct: 238 SIIGVAMLEFSGSPPNIGDLLNFLSAVFFGIHMLRTEHVSRSTNEKNFLPLLGYEVCVVA 297

Query: 313 LLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAM 372
             S +WYFI G   G Q  DPSSWTWTM W W+V FPWIPALYTG+FSTGLCLWIEM AM
Sbjct: 298 CFSTLWYFIEGGFDGIQACDPSSWTWTMVWHWIVTFPWIPALYTGVFSTGLCLWIEMTAM 357

Query: 373 RDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNC 432
            DVSATETAIIYGLEPVWGA FAWF+LGERWG  GW+GA LVLVGSLTVQIFGSSSP   
Sbjct: 358 CDVSATETAIIYGLEPVWGAAFAWFLLGERWGTAGWIGATLVLVGSLTVQIFGSSSPGGS 417

Query: 433 NEDEKRSKKADQKLELNKQNGFSSSPAAVTSREDVPNLLKK 473
            E+E +S+K D+ L  +KQNGFS+SP  V+ R+DV ++LKK
Sbjct: 418 VENEGKSEKVDRLLVPDKQNGFSTSPVPVSYRKDVTDMLKK 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424254|ref|XP_002280818.1| PREDICTED: uncharacterized transporter AF_0788 [Vitis vinifera] gi|297737689|emb|CBI26890.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/378 (73%), Positives = 318/378 (84%), Gaps = 1/378 (0%)

Query: 93  NSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIPV 152
           ++K   T   N    V   S KSLFG+RS+WRRILFAS+KVR IILLN +TVVYASNIPV
Sbjct: 84  DNKKPTTFGHNGATKVPTLSLKSLFGRRSLWRRILFASRKVRGIILLNVLTVVYASNIPV 143

Query: 153 IKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGL 212
           +KEVEAI DP+ F  VRF +SAIPFIPFV+RAR DV TRNAG ELG WVSLGYLMQ+LGL
Sbjct: 144 VKEVEAIMDPATFAAVRFVVSAIPFIPFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGL 203

Query: 213 ETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDL 272
            TSDAGRASF+SMFTVIVVPLLDGMLGA VPA TWFGA+MSILGVA+LESSGSPPSVGDL
Sbjct: 204 LTSDAGRASFLSMFTVIVVPLLDGMLGATVPAHTWFGALMSILGVAMLESSGSPPSVGDL 263

Query: 273 LNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSD 332
           LNFLSAVFFG+HMLRTEHISRST++++FLPLLGYEVC++AL S +WYF+GGS G  Q  D
Sbjct: 264 LNFLSAVFFGVHMLRTEHISRSTSRENFLPLLGYEVCIVALFSTIWYFVGGSFGAIQECD 323

Query: 333 PSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGA 392
            SS  WTM WDWMVAFPWIPA YTGI STGLCLWIEM AMRDVSATETAIIYGLEPVWGA
Sbjct: 324 LSSGMWTMLWDWMVAFPWIPAFYTGIISTGLCLWIEMDAMRDVSATETAIIYGLEPVWGA 383

Query: 393 GFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQN 452
           GFAWF+LGERW + GW+GAALVL GSLTVQIFGSSSP N + +E+R++K D  L  +K++
Sbjct: 384 GFAWFLLGERWSSLGWIGAALVLGGSLTVQIFGSSSP-NKSREEERNEKDDHLLVPDKES 442

Query: 453 GFSSSPAAVTSREDVPNL 470
           G+S+SP     R+D  ++
Sbjct: 443 GYSTSPVVAKFRKDASDI 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456145|ref|XP_002278448.1| PREDICTED: uncharacterized protein LOC100247357 [Vitis vinifera] gi|297734319|emb|CBI15566.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/389 (68%), Positives = 312/389 (80%), Gaps = 16/389 (4%)

Query: 92  CNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIP 151
           C SK  V +  + K  ++ +  KS    R +WRR+LFASKK++SIILLN +T+VYASNI 
Sbjct: 82  CISKAKVKAKFDWKKSIQ-KGAKS----RPLWRRVLFASKKMKSIILLNVVTIVYASNIA 136

Query: 152 VIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG 211
           V+KEVE I DP+AF+ VRFA+SAIPF+PFV RAR DV TRNAG ELGLW+SLGYL +ALG
Sbjct: 137 VVKEVETIMDPAAFSAVRFAVSAIPFLPFVFRARGDVQTRNAGLELGLWISLGYLAEALG 196

Query: 212 LETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGD 271
           L TS+AGRASF S  TVIVVPLLD MLGAIVPARTWFG +MS+LGVA+LE SGSPP+VGD
Sbjct: 197 LLTSEAGRASFFSFITVIVVPLLDSMLGAIVPARTWFGVLMSVLGVAMLECSGSPPNVGD 256

Query: 272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGS 331
           LLNFLSA+FFGIH+LRTE +SRST K++FLPLLGYEVCV+ALLS  WY IGG   G Q S
Sbjct: 257 LLNFLSAIFFGIHILRTEQLSRSTKKENFLPLLGYEVCVVALLSTFWYVIGGWFDGIQDS 316

Query: 332 DPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWG 391
           D +SWTW + WD MVAFPWIPALYTG+FSTGLCLW+E+ AMRDVSATETAIIYGLEP+WG
Sbjct: 317 DQASWTWAVLWDSMVAFPWIPALYTGVFSTGLCLWLEIGAMRDVSATETAIIYGLEPLWG 376

Query: 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKAD------QK 445
           AGFAWF+LGERWG TGW+GAAL+L GSLTVQ+FGSSS S     E   K+ D      QK
Sbjct: 377 AGFAWFLLGERWGTTGWIGAALLLGGSLTVQMFGSSSSSESIGVEDGDKEVDILVSEKQK 436

Query: 446 LELNKQNGFSSSPAA-VTSREDVPNLLKK 473
           L    Q G S+SP   ++SR+DV ++LKK
Sbjct: 437 L----QTGLSASPVVIISSRKDVIDMLKK 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520623|ref|XP_004167333.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229323 [Cucumis sativus]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/395 (61%), Positives = 296/395 (74%), Gaps = 9/395 (2%)

Query: 83  SSKPNTVAYCNSKNDVTSVSNSKDGVRAR-----SFKSLFGKRSVWRRILFASKKVRSII 137
           +SK   +  C     V   SN    +R R     S  SLF KRS+W RI FASKKVRSII
Sbjct: 62  NSKSVVLGDCQGHELVRVSSNP---IRPRNSVILSLVSLFDKRSLWXRIFFASKKVRSII 118

Query: 138 LLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFEL 197
           LLN +T+VYASNIP +KEVE + DP+ F VVRFA++AIPF+P VL   DDV  R+ G EL
Sbjct: 119 LLNVVTIVYASNIPFVKEVEELVDPATFNVVRFAMTAIPFVPLVLDKWDDVEIRDTGIEL 178

Query: 198 GLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGV 257
           G WVSLGYLMQA GL TSDAGRASFISM TV+VVPLLDG+LGAIVPARTWFGA+MS++GV
Sbjct: 179 GFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPLLDGLLGAIVPARTWFGALMSVVGV 238

Query: 258 ALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAV 317
           A+L SSGSPP VGDLLNF+SA+FFG+HMLRTEHISR  +K  FLPLL YEVCV+++LS +
Sbjct: 239 AMLASSGSPPCVGDLLNFMSAIFFGVHMLRTEHISRRIDKDKFLPLLAYEVCVVSILSIL 298

Query: 318 WYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSA 377
           WYFI   + GT+ +   SW W  + DW+  FPW+PALYTG+ STG CLW+EMAAM DVSA
Sbjct: 299 WYFIWRWINGTE-TISGSWNWKTYLDWVFMFPWVPALYTGLLSTGFCLWLEMAAMCDVSA 357

Query: 378 TETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEK 437
           TETAIIY LEPVWG  FAW +LGERWG TGW+GAALVL GSLTVQI  SSS  +C ++  
Sbjct: 358 TETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAALVLGGSLTVQILASSSTKSCKDETS 417

Query: 438 RSKKADQKLELNKQNGFSSSPAAVTSREDVPNLLK 472
           ++K+    L  + ++  ++SP  +T  +++ + LK
Sbjct: 418 KNKEVHGLLSSSDEHSLTTSPIVITRVKNIADHLK 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449134|ref|XP_004142320.1| PREDICTED: uncharacterized protein LOC101219169 [Cucumis sativus]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/478 (54%), Positives = 325/478 (67%), Gaps = 37/478 (7%)

Query: 13  RWSTKIASDCSTADLCTVPSNSSIFICCQCHYVNRPHFTASALHDSDFSSVTCTKSVS-R 71
           +WS+ + +          PS++S FI    +Y  R     SA       +V    S S R
Sbjct: 6   QWSSSLHTASINLKFPIFPSSTSNFIF---YYCKRSPVIDSATRRC---AVYAQNSNSPR 59

Query: 72  PRKWIDSDTACSSKPNTVAYCNSKNDVTSVSNSKDGVRAR-----SFKSLFGKRSVWRRI 126
           P+         +SK   +  C     V   SN    +R R     S  SLF KRS+WRRI
Sbjct: 60  PK---------NSKSVVLGDCQGHELVRVSSNP---IRPRNSVILSLVSLFDKRSLWRRI 107

Query: 127 LFASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD 186
            FASKKVRSIILLN +T+VYAS+IPV+KEVE + DP+ F VVRFA++AIPF+P VL   D
Sbjct: 108 FFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMTAIPFVPLVLDKWD 167

Query: 187 DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPART 246
           DV  R+AG ELG WVSLGYLMQA GL TSDAGRASFISM TV+VVPLLDG+LGAIVPART
Sbjct: 168 DVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPLLDGLLGAIVPART 227

Query: 247 WFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGY 306
           WFGA+MS++GVA+LESSGSPP VGDLLNF+SA+FFG+HMLRTEHISR  +K  FLPLL Y
Sbjct: 228 WFGALMSVVGVAMLESSGSPPCVGDLLNFMSAIFFGVHMLRTEHISRRIDKDKFLPLLAY 287

Query: 307 EVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLW 366
           EVCV+++LS +WYFI   + GT+ +   SW W  + DW+  FPW+PALYTG+ STG CLW
Sbjct: 288 EVCVVSILSILWYFIWRWINGTE-TISESWNWKTYLDWVFMFPWVPALYTGLLSTGFCLW 346

Query: 367 IEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVL----------- 415
           +EMAAM DVSATETAIIY LEPVWG  FAW +LGERWG TGW+GAALVL           
Sbjct: 347 LEMAAMCDVSATETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAALVLGKLSSKIKKAV 406

Query: 416 -VGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQNGFSSSPAAVTSREDVPNLLK 472
             GSLTVQI  SSS  +C ++  ++K+    L  + ++  ++SP  +T  +++ + LK
Sbjct: 407 ICGSLTVQILASSSTKSCKDETSKNKEFHGLLSSSDEHSLTTSPIVITRVKNIADHLK 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111492|ref|XP_002315877.1| predicted protein [Populus trichocarpa] gi|222864917|gb|EEF02048.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/314 (76%), Positives = 268/314 (85%), Gaps = 1/314 (0%)

Query: 161 DPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRA 220
           DP+ FT VRF +SAIPF+PF L++ DD   RNAG ELG WVSLGYL QALGL TSDAGRA
Sbjct: 2   DPATFTAVRFVVSAIPFLPFALQSWDDARIRNAGIELGFWVSLGYLTQALGLLTSDAGRA 61

Query: 221 SFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVF 280
           SFISMFTVIVVPLLDGMLGAIVPA TWFGA+MSI+GVA+LESSGSPPS+GDLLNFLSAVF
Sbjct: 62  SFISMFTVIVVPLLDGMLGAIVPAHTWFGALMSIVGVAMLESSGSPPSIGDLLNFLSAVF 121

Query: 281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTM 340
           FG+HMLRTEHISRST+KK+FLP+LG+EVCVIA+ S +WYF+G   G  Q  DPSSWTW M
Sbjct: 122 FGVHMLRTEHISRSTDKKNFLPILGFEVCVIAISSTIWYFLGSWFGDVQTCDPSSWTWEM 181

Query: 341 FWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILG 400
            W W+  FPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWF+LG
Sbjct: 182 VWHWLAVFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFLLG 241

Query: 401 ERWGATGWLGAALVLVGSLTVQIFG-SSSPSNCNEDEKRSKKADQKLELNKQNGFSSSPA 459
           ERWGATGW+GAALVL GSL VQI G SSS S   +DE RS+K D  L  +KQN FS+SP 
Sbjct: 242 ERWGATGWIGAALVLGGSLMVQICGLSSSSSVSGKDEVRSEKVDHLLVSDKQNDFSTSPV 301

Query: 460 AVTSREDVPNLLKK 473
            V S++DVP +LKK
Sbjct: 302 RVISKKDVPKILKK 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113259|gb|AFW04249.1| integral membrane protein [Triticum aestivum]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/382 (58%), Positives = 277/382 (72%), Gaps = 2/382 (0%)

Query: 92  CNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIP 151
           C+   D  +    + G            R +WRRILFASKK RSI++LNA+TV+YAS+IP
Sbjct: 56  CSPLEDPGATGREEGGKEKGGVSKRVHGRPMWRRILFASKKTRSIMILNALTVIYASDIP 115

Query: 152 VIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG 211
           V+KEVEA+T+P+ F +VRF ++AIPFIPFV+RA  D  TRN G ELG+WVSL YL QA+G
Sbjct: 116 VLKEVEALTEPAVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIG 175

Query: 212 LETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGD 271
           L TS+AGRASFI+ FTVIVVPL+DG+ GA +P  TWFGA++S++GV LLE  GSPP VGD
Sbjct: 176 LITSEAGRASFIAAFTVIVVPLIDGIFGASIPMLTWFGAIVSVIGVGLLECGGSPPCVGD 235

Query: 272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGS 331
           +LNFLSAVFFGIHMLRTE ISRST+KK F+ LL +EV V+AL S +W+ +  +      S
Sbjct: 236 VLNFLSAVFFGIHMLRTEQISRSTDKKKFMALLSFEVLVVALTSIIWFLLKDAFVEVHDS 295

Query: 332 DPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWG 391
              SWT+   WD   +FPWIPALYTG+FSTGLC+W EM AM  VSATETAI+YGLEPVWG
Sbjct: 296 SFESWTFGTLWDSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWG 355

Query: 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQ 451
           A FAWF+LGERW    W+GAALVL GSLTVQ+FG S+P    + E RS    +   L +Q
Sbjct: 356 ATFAWFLLGERWDNAAWIGAALVLCGSLTVQLFG-SAPEKSQKVESRSGNTFES-PLKRQ 413

Query: 452 NGFSSSPAAVTSREDVPNLLKK 473
              S S   V SR+++ + L++
Sbjct: 414 ERLSLSAIPVDSRKNIGSQLER 435

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326490417|dbj|BAJ84872.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/382 (58%), Positives = 277/382 (72%), Gaps = 4/382 (1%)

Query: 92  CNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIP 151
           C+   D       K+  + R        R +WRRILFASKK RSI++LNA+TV+YAS+IP
Sbjct: 53  CSPLEDPGREEGRKE--KGRDVGKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIP 110

Query: 152 VIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG 211
           V+KEVEA+T+P+ F +VRF ++AIPF+PFV+RA  D  TRN G ELGLWVSL YL QA+G
Sbjct: 111 VLKEVEALTEPAVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIG 170

Query: 212 LETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGD 271
           L TS+AGRASFI+ FTVIVVPL+DG  GA +P  TWFGA++SI+GV LLE  GSPP VGD
Sbjct: 171 LTTSEAGRASFIAAFTVIVVPLIDGFFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGD 230

Query: 272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGS 331
           +LNFLSAVFFGIHMLRTE ISRST+KK F+ LL  EV V+A  S +W+ +  +    Q S
Sbjct: 231 VLNFLSAVFFGIHMLRTEQISRSTDKKKFMALLSLEVLVVAFTSILWFLLKDAFVEVQDS 290

Query: 332 DPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWG 391
              +WT+   WD   +FPWIPALYTG+FSTGLC+W EM AM  VSATETAI+YGLEPVWG
Sbjct: 291 GFEAWTFGTLWDSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWG 350

Query: 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQ 451
           AGFAWF+LGERW    W+GAALVL GSLTVQ+FG ++P    + E  S+   +   L +Q
Sbjct: 351 AGFAWFLLGERWDNAAWIGAALVLCGSLTVQLFG-TAPEKSQKVESHSRNTFES-PLKRQ 408

Query: 452 NGFSSSPAAVTSREDVPNLLKK 473
              S S   V SR+++ + L++
Sbjct: 409 ERLSLSAIPVDSRKNIGSQLER 430

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113263|gb|AFW04252.1| integral membrane protein [Triticum urartu]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/382 (58%), Positives = 275/382 (71%), Gaps = 2/382 (0%)

Query: 92  CNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIP 151
           C+   D  +    + G            R +WRRILFASKK RSI++LNA+TV+YAS+IP
Sbjct: 56  CSPLEDPGATGRDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIP 115

Query: 152 VIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG 211
           V+KEVEA+T+P+ F +VRF ++AIPF+PFV+RA  D  TRN G ELG+WVSL YL QA+G
Sbjct: 116 VLKEVEALTEPAVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIG 175

Query: 212 LETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGD 271
           L TS+AGRASFI+ FTVIVVPL+DG+ GA +P  TWFGA++SI+GV LLE  GSPP +GD
Sbjct: 176 LITSEAGRASFIAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGD 235

Query: 272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGS 331
           LLNFLSAVFFGIHMLRTE ISRST+KK F+ LL +EV V+A  S VW+ +         S
Sbjct: 236 LLNFLSAVFFGIHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSIVWFLLKDVFTEVHDS 295

Query: 332 DPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWG 391
              S T+   WD   +FPWIPALYTG+FSTGLC+W EM AM  VSATETAI+YGLEPVWG
Sbjct: 296 SFESLTFGTLWDSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWG 355

Query: 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQ 451
           A FAWF+LGERW    W+GAALVL GSLTVQ+FG S+P    + E RS    +   L +Q
Sbjct: 356 AAFAWFLLGERWDNAAWIGAALVLCGSLTVQLFG-SAPEKSQKVESRSGNTFES-PLERQ 413

Query: 452 NGFSSSPAAVTSREDVPNLLKK 473
           N  S S   V SR+++ + L++
Sbjct: 414 NRLSLSAIPVDSRKNIGSQLER 435

Source: Triticum urartu

Species: Triticum urartu

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113253|gb|AFW04245.1| integral membrane protein [Triticum aestivum]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/382 (57%), Positives = 275/382 (71%), Gaps = 2/382 (0%)

Query: 92  CNSKNDVTSVSNSKDGVRARSFKSLFGKRSVWRRILFASKKVRSIILLNAITVVYASNIP 151
           C+   D  +    + G            R +WRRILFASKK RSI++LNA+TV+YAS+IP
Sbjct: 56  CSPLEDPGATGRDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIP 115

Query: 152 VIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG 211
           V+KEVEA+T+P+ F +VRF ++AIPF+PFV+RA  D  TRN G ELG+WVSL YL QA+G
Sbjct: 116 VLKEVEALTEPAVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIG 175

Query: 212 LETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPPSVGD 271
           L TS+AGRASFI+ FTVIVVPL+DG+ GA +P  TWFGA++SI+GV LLE  GSPP +GD
Sbjct: 176 LITSEAGRASFIAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGD 235

Query: 272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGS 331
           +LNFLSAVFFGIHMLRTE ISRST+KK F+ LL +EV V+A  S VW+ +         S
Sbjct: 236 VLNFLSAVFFGIHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSIVWFLLKDVFAEVHDS 295

Query: 332 DPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWG 391
              S T+   WD   +FPWIPALYTG+FSTGLC+W EM AM  VSATETAI+YGLEPVWG
Sbjct: 296 SFESLTFGTLWDSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWG 355

Query: 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSPSNCNEDEKRSKKADQKLELNKQ 451
           A FAWF+LGERW    W+GAALVL GSLTVQ+FG S+P    + E RS    +   L +Q
Sbjct: 356 AAFAWFLLGERWDNAAWIGAALVLCGSLTVQLFG-SAPEKSQKVESRSGNTFES-PLERQ 413

Query: 452 NGFSSSPAAVTSREDVPNLLKK 473
           N  S S   V SR+++ + L++
Sbjct: 414 NRLSLSAIPVDSRKNIGSQLER 435

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
UNIPROTKB|Q48AQ1	322	CPS_0094 "Membrane protein" [C	0.604	0.888	0.257	9.6e-22
TIGR_CMR|CPS_0094	322	CPS_0094 "membrane protein" [C	0.604	0.888	0.257	9.6e-22
UNIPROTKB|Q83C01	305	CBU_1336 "Transporter, drug/me	0.621	0.963	0.238	2.6e-19
TIGR_CMR|CBU_1336	305	CBU_1336 "membrane protein, pu	0.621	0.963	0.238	2.6e-19
UNIPROTKB|Q4KHB5	301	PFL_1237 "Putative membrane pr	0.395	0.621	0.291	1.1e-17
TIGR_CMR|BA_1622	303	BA_1622 "transporter, EamA fam	0.562	0.877	0.225	5.1e-13
UNIPROTKB|Q74FR1	308	GSU0545 "Membrane protein, put	0.338	0.519	0.277	4.3e-12
TIGR_CMR|GSU_0545	308	GSU_0545 "membrane protein, pu	0.338	0.519	0.277	4.3e-12
UNIPROTKB|Q87ZF9	312	PSPTO_3470 "Membrane protein,	0.496	0.753	0.250	3.5e-09
UNIPROTKB|Q48GZ9	307	PSPPH_3171 "Membrane protein,	0.498	0.768	0.248	2.1e-08

UNIPROTKB|Q48AQ1 CPS_0094 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 259 (96.2 bits), Expect = 9.6e-22, P = 9.6e-22
 Identities = 79/307 (25%), Positives = 140/307 (45%)

Query:   130 SKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFA---LSAIPFIPFVLRAR- 185
             S ++ +I+LL    +     +P+   +E +   + F  +RFA   LS +P + FV +   
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPIDLAIE-VMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   186 ------DDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLG 239
                   D V    +G  LG ++ +G+  Q  G+  +    A FI+   V +VP+L  ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   240 A-IVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISRSTNK 297
               +VP   W G V +  G+ +L        + GD+L  + A  F  H++ T+   R  + 
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTD---RFVDN 180

Query:   298 KDFLPLLGYEVCVIALLSAVWYFIGGS-LGGTQGSDPSSWTWTMFWDWMVAFPWIPALYT 356
                +PL   ++  +++ S +  FIG   +   Q ++P SW   +F   M+       L +
Sbjct:   181 LPIIPLSIVQIFAVSIYSTIAIFIGPDPVFYYQDAEPVSWYQQLFTPLMI----FAILVS 236

Query:   357 GIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLV 416
             GI  T    W +  +   +   + A+I+  EPV+    AW  L E  G  G +GA L+L 
Sbjct:   237 GILGTAYAFWAQSVSQTLLKPHKVALIFAAEPVFACIAAWVFLDEVLGEKGMIGAGLILA 296

Query:   417 GSLTVQI 423
             G L  ++
Sbjct:   297 GMLVSEL 303

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0094 CPS_0094 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 259 (96.2 bits), Expect = 9.6e-22, P = 9.6e-22
 Identities = 79/307 (25%), Positives = 140/307 (45%)

Query:   130 SKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFA---LSAIPFIPFVLRAR- 185
             S ++ +I+LL    +     +P+   +E +   + F  +RFA   LS +P + FV +   
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPIDLAIE-VMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   186 ------DDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLG 239
                   D V    +G  LG ++ +G+  Q  G+  +    A FI+   V +VP+L  ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   240 A-IVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISRSTNK 297
               +VP   W G V +  G+ +L        + GD+L  + A  F  H++ T+   R  + 
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTD---RFVDN 180

Query:   298 KDFLPLLGYEVCVIALLSAVWYFIGGS-LGGTQGSDPSSWTWTMFWDWMVAFPWIPALYT 356
                +PL   ++  +++ S +  FIG   +   Q ++P SW   +F   M+       L +
Sbjct:   181 LPIIPLSIVQIFAVSIYSTIAIFIGPDPVFYYQDAEPVSWYQQLFTPLMI----FAILVS 236

Query:   357 GIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLV 416
             GI  T    W +  +   +   + A+I+  EPV+    AW  L E  G  G +GA L+L 
Sbjct:   237 GILGTAYAFWAQSVSQTLLKPHKVALIFAAEPVFACIAAWVFLDEVLGEKGMIGAGLILA 296

Query:   417 GSLTVQI 423
             G L  ++
Sbjct:   297 GMLVSEL 303

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q83C01 CBU_1336 "Transporter, drug/metabolite exporter family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 237 (88.5 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 76/319 (23%), Positives = 148/319 (46%)

Query:   133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFV-LRARDDVHTR 191
             VR+ + L  IT+++    P+IK+      PS F V+R +++++  +P + L+ +    T 
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRKKTTFTM 64

Query:   192 -NAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGA 250
                   LG + S  Y+ Q++GLE+  +  ++FI+  +V+VVP L  +     P   WF  
Sbjct:    65 IKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WFDF 122

Query:   251 VMSIL---GVALLESSGS-PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGY 306
             V ++L   G+ +L  +       GD      AV + ++++  +  S+    +D +  L Y
Sbjct:   123 VTALLCLGGIFILTGANIFNMKGGDFWTLGCAVAYALYIVTLQAFSKKLKPEDTILALSY 182

Query:   307 EVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLW 366
             ++    L S ++  +      T     S ++W +          I  L+  IF+TGL  +
Sbjct:   183 QI----LFSLIFPLLTAFYKTTA----SIFSWPVI---------IAVLFCAIFATGLVFY 225

Query:   367 IEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426
             +++   R +  +   +IY  EP++ A F + + GE       +G  L+LV  +  ++F S
Sbjct:   226 LQLRYQRYIPVSRAVLIYAFEPIFAALFGYLLNGEAIYLNTVIGGFLILVSFVLSELFPS 285

Query:   427 SSPSNCNEDEKRSKKADQK 445
                S  N     +  ++ K
Sbjct:   286 KKSSQDNNPLSETYASESK 304

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1336 CBU_1336 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 237 (88.5 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 76/319 (23%), Positives = 148/319 (46%)

Query:   133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFV-LRARDDVHTR 191
             VR+ + L  IT+++    P+IK+      PS F V+R +++++  +P + L+ +    T 
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRKKTTFTM 64

Query:   192 -NAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGA 250
                   LG + S  Y+ Q++GLE+  +  ++FI+  +V+VVP L  +     P   WF  
Sbjct:    65 IKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WFDF 122

Query:   251 VMSIL---GVALLESSGS-PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGY 306
             V ++L   G+ +L  +       GD      AV + ++++  +  S+    +D +  L Y
Sbjct:   123 VTALLCLGGIFILTGANIFNMKGGDFWTLGCAVAYALYIVTLQAFSKKLKPEDTILALSY 182

Query:   307 EVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLW 366
             ++    L S ++  +      T     S ++W +          I  L+  IF+TGL  +
Sbjct:   183 QI----LFSLIFPLLTAFYKTTA----SIFSWPVI---------IAVLFCAIFATGLVFY 225

Query:   367 IEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426
             +++   R +  +   +IY  EP++ A F + + GE       +G  L+LV  +  ++F S
Sbjct:   226 LQLRYQRYIPVSRAVLIYAFEPIFAALFGYLLNGEAIYLNTVIGGFLILVSFVLSELFPS 285

Query:   427 SSPSNCNEDEKRSKKADQK 445
                S  N     +  ++ K
Sbjct:   286 KKSSQDNNPLSETYASESK 304

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q4KHB5 PFL_1237 "Putative membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 166 (63.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 58/199 (29%), Positives = 96/199 (48%)

Query:   130 SKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA----R 185
             S+ +R+ +L+    V++ S             P  ++ +RFAL ++  +P VLR     R
Sbjct:     3 SQALRADVLMLITAVIWGSAFVAQTSGMNHIGPFLYSGLRFALGSLCLLPLVLRKTPTDR 62

Query:   186 DDVHTRNAGFELG-----LWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGA 240
                   N G  LG     L ++LG  +Q +GL  +    A FI+   VIVVPLL  ++G 
Sbjct:    63 QPEPLLNRGLLLGGVLMGLALALGINLQQVGLMFTTVTNAGFITGLYVIVVPLLGLLIGH 122

Query:   241 IVPARTWFGAVMSILGVALLESSGS-PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKD 299
                  TW GAV++++G+ LL  S S   + GD L  + A  +G H++    +    +   
Sbjct:   123 KTGLGTWLGAVLAVVGMFLLSVSDSFHVASGDWLQLIGAFVWGGHVILVG-VFAGRHDPI 181

Query:   300 FLPLLGYEVC-VIALLSAV 317
              L  L +  C V++L+ A+
Sbjct:   182 RLAFLQFATCAVVSLILAL 200

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1622 BA_1622 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 194 (73.4 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 66/293 (22%), Positives = 137/293 (46%)

Query:   142 ITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIP--FIPFVLRAR-DDVHTRN---AGF 195
             ++ ++ +   V++   +   P  F  +RF  + I   F+  +   +    H +    AG 
Sbjct:    16 VSFIWGATFVVVQNAMSFVGPFTFNGIRFLFAGIILLFVQILFSKKASKQHIKQSSLAGL 75

Query:   196 ELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWF---GAVM 252
              +G ++ +GY++Q  GL  + + +A F++  ++++VP+L  +   +    T F   G  +
Sbjct:    76 IVGFFLCIGYVLQTFGLLYTTSSKAGFLTGLSIVMVPILSFIF--LKQKATIFIVIGIAV 133

Query:   253 SILGVALLESSGS-PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVI 311
             +  G+ LL +  S   ++GD+L    AV F  H+L     S+  +    L L   +V  +
Sbjct:   134 ATAGLYLLTAGDSFQLNIGDILVLGCAVAFAAHILVNGFFSKKISP---LLLSTSQVLAV 190

Query:   312 ALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALY-TGIFSTGLCLWIEMA 370
              L S++  F+       +    + WT + F         + AL+ T +F+T +  +I+ +
Sbjct:   191 GLFSSICAFLFEDW--EKLFSVALWTNSSF---------LFALFLTSLFATSIAFFIQTS 239

Query:   371 AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423
             A +  S T  AII+ +EPV+ A     +  E+   +  +G   + +G + V++
Sbjct:   240 AQKHTSPTRVAIIFAMEPVFAALTGVLVANEQLSISAIIGCLCIFLGMVFVEL 292

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|Q74FR1 GSU0545 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 123 (48.4 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 46/166 (27%), Positives = 79/166 (47%)

Query:   132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLR--ARDDVH 189
             KV +I+L    T+++  +    K       P  F   RFAL+A+      L   AR + H
Sbjct:    13 KVTAILLFT--TLMWGGSFLFNKIGMREVPPVHFFFFRFALAALLMGGVCLPRLARLNRH 70

Query:   190 TRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFG 249
                 G  +GL ++   L   LG+  +   RA +++   V+ +PLL   L      R  FG
Sbjct:    71 IAVRGAVVGLALAAVNLTFVLGVSGTTISRAGYLNNLFVLFIPLLTFALWRERVDRVTFG 130

Query:   250 AV-MSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISR 293
              + ++++G+  L S G+   + GDLL+ + A+F  IH++    + R
Sbjct:   131 GIALAVVGLWALASGGAEGFNQGDLLSTVCALFIAIHIIAVSRVLR 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0545 GSU_0545 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 123 (48.4 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 46/166 (27%), Positives = 79/166 (47%)

Query:   132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLR--ARDDVH 189
             KV +I+L    T+++  +    K       P  F   RFAL+A+      L   AR + H
Sbjct:    13 KVTAILLFT--TLMWGGSFLFNKIGMREVPPVHFFFFRFALAALLMGGVCLPRLARLNRH 70

Query:   190 TRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFG 249
                 G  +GL ++   L   LG+  +   RA +++   V+ +PLL   L      R  FG
Sbjct:    71 IAVRGAVVGLALAAVNLTFVLGVSGTTISRAGYLNNLFVLFIPLLTFALWRERVDRVTFG 130

Query:   250 AV-MSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISR 293
              + ++++G+  L S G+   + GDLL+ + A+F  IH++    + R
Sbjct:   131 GIALAVVGLWALASGGAEGFNQGDLLSTVCALFIAIHIIAVSRVLR 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87ZF9 PSPTO_3470 "Membrane protein, putative" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 162 (62.1 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 67/267 (25%), Positives = 125/267 (46%)

Query:   132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPF---VLRARDDV 188
             K  ++++L  IT+++     +++    ++ P  F  +RFA +A+    F   VLR    +
Sbjct:    12 KAEAVLIL--ITMLWGGTFLLVQHALTVSGPMFFVGLRFAAAALIVALFSLKVLRGLTFL 69

Query:   189 HTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGM-LGAIVPARTW 247
               + AG  +G  + LGY +Q +GL+T  + +++FI+   V  VPLL  + LG        
Sbjct:    70 ELK-AGVFIGTAIMLGYGLQTVGLQTIPSSQSAFITALYVPCVPLLQWLVLGRRPGLMPT 128

Query:   248 FGAVMSILGVALLES-SGSPPSV--GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLL 304
              G +++  G+ L+    G+  ++  G+++  +SAV     ++    IS    K D     
Sbjct:   129 LGIILAFTGLMLVSGPQGATLNLSSGEIVTLISAVAIAAEIIM---ISAYAGKVDVR--- 182

Query:   305 GYEVCVIALLSA-VWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGL 363
                V V+ L +A +  F+   +  TQ   P        + W++    + A+  G+ S  +
Sbjct:   183 --RVTVVQLATASILAFL--MIVPTQERLPD-------FSWLLV---VSAVGLGLMSAAI 228

Query:   364 CLWIEMAAMRDVSATETAIIYGLEPVW 390
              + +  A  + VS T   +IY  EPVW
Sbjct:   229 QIAMNWA-QKSVSPTRATVIYAGEPVW 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48GZ9 PSPPH_3171 "Membrane protein, putative" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 66/266 (24%), Positives = 123/266 (46%)

Query:   132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPF---VLRARDDV 188
             K  ++++L  IT+++     +++    ++ P  F  +RFA +A+    F   VLR    +
Sbjct:    12 KAEAVLIL--ITMLWGGTFLLVQHALTVSGPMLFVGLRFAAAALIVALFSMKVLRGLTFL 69

Query:   189 HTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGM-LGAIVPARTW 247
               + AG  +G  + LGY +Q +GL+T  + +++FI+   V  VPLL  + LG        
Sbjct:    70 ELK-AGVFIGTAIMLGYGLQTIGLQTIPSSQSAFITALYVPCVPLLQWLVLGRRPGLMPT 128

Query:   248 FGAVMSILGVALLES-SGSPPSV--GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLL 304
              G +++  G+ L+    G+   +  G+++  +SAV     ++    IS    K D   + 
Sbjct:   129 LGILLAFTGLMLISGPQGASLQLNSGEIVTLISAVAIAAEIIM---ISAYAGKVDVRRVT 185

Query:   305 GYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC 364
                V  +A  SA+ + +   +  TQ   P        + W++    + A+  G  S  + 
Sbjct:   186 ---VVQLATASALAFLM---IVPTQERLPD-------FSWLLV---LSAVGLGAMSAIIQ 229

Query:   365 LWIEMAAMRDVSATETAIIYGLEPVW 390
             + +  A  + VS T   +IY  EPVW
Sbjct:   230 IAMNWA-QKSVSPTRATVIYAGEPVW 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-19
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	3e-10
pfam00892	126	pfam00892, EamA, EamA-like transporter family	2e-09
COG5006	292	COG5006, rhtA, Threonine/homoserine efflux transpo	2e-05
pfam00892	126	pfam00892, EamA, EamA-like transporter family	5e-05

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 88.4 bits (219), Expect = 1e-19
 Identities = 68/304 (22%), Positives = 124/304 (40%), Gaps = 33/304 (10%)

Query: 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTV-VRFALSAIPFIPFVLRARDDVHTR 191
           +  ++ L    +++  +   +K      DP  F   +RF ++A+  +P +L     +   
Sbjct: 6   LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPA 65

Query: 192 NAGFELGLWVSL-----GYLMQALGLETSDAGRASFISMFTVIVVPLLDGML--GAIVPA 244
              + L L ++L      +L+  L L+ + A  AS I     +   LL  +L  G  +  
Sbjct: 66  LRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSL 125

Query: 245 RTWFGAVMSILGVALL----ESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDF 300
               G ++++ GV L+       G    +G LL   +A+ + ++    + +SR       
Sbjct: 126 LQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGP---- 181

Query: 301 LPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFS 360
              L   + ++  L  +  F       +    P                W+  LY G+FS
Sbjct: 182 -VTLALLLQLLLALLLLLLFFL-----SGFGAPILSRA-----------WLLLLYLGVFS 224

Query: 361 TGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT 420
           TGL   +   A+R + A+  A++  LEPV+ A     +LGE       LGAALV++G L 
Sbjct: 225 TGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLL 284

Query: 421 VQIF 424
             + 
Sbjct: 285 ASLR 288

Length = 292

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 55/275 (20%), Positives = 91/275 (33%), Gaps = 28/275 (10%)

Query: 152 VIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQAL- 210
           VI +      P  F V R  + A+  +  +LR R  +  +     L L      +   L 
Sbjct: 7   VIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRRPPL--KRLLRLLLLGALQIGVFYVLY 64

Query: 211 ---GLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSGSPP 267
                       A  + +  + V  L D M            AV+ + G  LL S G+  
Sbjct: 65  FVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS 124

Query: 268 --SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSL 325
               G LL   S + F +  +    + +   KK+   LL          +     +G  L
Sbjct: 125 INPAGLLLGLGSGISFALGTV----LYKRLVKKEGPELL--------QFTGWVLLLGALL 172

Query: 326 GGTQGSDPSSWTWTMFWDWMVA-FPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIY 384
                     + W +  +       W   LY G+  T L  ++    +  V  +  +I+ 
Sbjct: 173 -------LLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA 225

Query: 385 GLEPVWGAGFAWFILGERWGATGWLGAALVLVGSL 419
             EP+        ILGE       +G AL++   L
Sbjct: 226 LAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWL 409
            +  LY G+F T L   +   A++ VSA+  ++I  L PV+    +  +LGE+      L
Sbjct: 53  ILALLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLL 112

Query: 410 GAALVLVGSL 419
           G  L+L+G L
Sbjct: 113 GIVLILLGVL 122

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|227339 COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 26/174 (14%)

Query: 250 AVMSILGVALL----ESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLG 305
             +++LG+ LL    +S  S   VG  L   +   + ++++  +   R+ +         
Sbjct: 125 VALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-------T 177

Query: 306 YEVCVIALLSAVWYF-IGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC 364
             V V  L++A+    IG +  G              +   +      AL   + S+ L 
Sbjct: 178 AGVAVGMLVAALIVLPIGAAQAGPA-----------LFSPSLL---PLALGVAVLSSALP 223

Query: 365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGS 418
             +EM A+R + A     +  LEP   A      LGE      WL  A V+  S
Sbjct: 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAAS 277

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 144 VVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFEL------ 197
           + +A      K++     P  FT  RF ++ I  I  +   R      +    L      
Sbjct: 1   LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLG 60

Query: 198 GLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGM-LGAIVPARTWFGAVMSILG 256
               +LGYL+    L+   A  AS I+  + +   +L  + LG  +  +   G V+ +LG
Sbjct: 61  LFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLG 120

Query: 257 VALL 260
           V L+
Sbjct: 121 VLLI 124

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	99.98
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.97
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.96
COG2962	293	RarD Predicted permeases [General function predict	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.94
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.92
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.89
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.87
KOG2765	416	consensus Predicted membrane protein [Function unk	99.86
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.74
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.69
COG2510	140	Predicted membrane protein [Function unknown]	99.56
COG2510	140	Predicted membrane protein [Function unknown]	99.45
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.42
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.41
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.4
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.4
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.38
KOG2766	336	consensus Predicted membrane protein [Function unk	99.37
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.31
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.29
KOG1580	337	consensus UDP-galactose transporter related protei	99.26
KOG1581	327	consensus UDP-galactose transporter related protei	99.19
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.12
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.05
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.03
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.03
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.01
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.98
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.98
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.94
PRK13499	345	rhamnose-proton symporter; Provisional	98.89
PRK15430	296	putative chloramphenical resistance permease RarD;	98.89
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.86
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.85
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.83
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.8
PLN00411	358	nodulin MtN21 family protein; Provisional	98.76
PRK11689	295	aromatic amino acid exporter; Provisional	98.74
PRK11272	292	putative DMT superfamily transporter inner membran	98.68
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.6
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.59
KOG1582	367	consensus UDP-galactose transporter related protei	98.53
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.5
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.49
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.44
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.39
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.33
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.32
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.31
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.31
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.3
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.27
COG2962	293	RarD Predicted permeases [General function predict	98.22
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.07
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.03
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.96
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.82
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.75
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.68
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.64
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.6
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.57
COG2076	106	EmrE Membrane transporters of cations and cationic	97.55
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.53
PRK11431	105	multidrug efflux system protein; Provisional	97.48
COG2076	106	EmrE Membrane transporters of cations and cationic	97.44
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.43
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.43
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.42
PRK11431	105	multidrug efflux system protein; Provisional	97.42
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.42
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.39
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.36
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.26
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.07
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.01
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.76
PRK13499	345	rhamnose-proton symporter; Provisional	96.72
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.69
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.57
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.51
KOG1581	327	consensus UDP-galactose transporter related protei	96.34
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.52
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.49
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.44
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.09
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.92
KOG1580	337	consensus UDP-galactose transporter related protei	94.26
KOG2765	416	consensus Predicted membrane protein [Function unk	94.12
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.01
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	91.96
KOG4831	125	consensus Unnamed protein [Function unknown]	91.11
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	90.45
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	89.91
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	89.14
PRK02237	109	hypothetical protein; Provisional	86.83
KOG1582	367	consensus UDP-galactose transporter related protei	86.77
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	85.91
KOG3912	372	consensus Predicted integral membrane protein [Gen	84.48
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	83.99
PF03348	429	Serinc: Serine incorporator (Serinc); InterPro: IP	83.91
PRK02237	109	hypothetical protein; Provisional	83.0
KOG1443	349	consensus Predicted integral membrane protein [Fun	81.93

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=6.4e-31  Score=264.24  Aligned_cols=281  Identities=14%  Similarity=0.151  Sum_probs=219.2

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhh-ccCChHHHHHHHHHHHHHHHHHHHHhhcC--cc-----cchhHHHHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVE-AITDPSAFTVVRFALSAIPFIPFVLRARD--DV-----HTRNAGFELGLWVSL  203 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~l~~~~~~~~~~~--~~-----~~~~~~ll~g~~~~~  203 (473)
                      +.+.++.++...+.++...++.|.+. .+++|+.++++|+.++.++++++.+++++  ++     +.+....+.|++++.
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999885 48999999999999999999888765432  11     122344556666655


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-H------hcCcCchHHHHHHHHHHHHhheeecCCC-----------
Q 011986          204 GYLMQALGLETSDAGRASFISMFTVIVVPLLDG-M------LGAIVPARTWFGAVMSILGVALLESSGS-----------  265 (473)
Q Consensus       204 ~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~------l~er~s~~~~~g~~lal~GV~li~~~~~-----------  265 (473)
                      .+.++++|+++++++.++++.+++|+++.++++ +      +|||+++++++|++++++|++++...++           
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            667899999999999999999999999999999 6      4999999999999999999998764211           


Q ss_pred             -------------CC--CHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 011986          266 -------------PP--SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQG  330 (473)
Q Consensus       266 -------------~~--~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  330 (473)
                                   ..  ..|++++++++++|++|.++.|+..++.+.  .....+++..++++...+.....+...... 
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~-  247 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKNNPSV-  247 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccCCccc-
Confidence                         01  238899999999999999999998876553  234555666666655555444432211100 


Q ss_pred             CCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHH
Q 011986          331 SDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLG  410 (473)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G  410 (473)
                             |...|+    ..+..+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|
T Consensus       248 -------~~~~~~----~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG  315 (358)
T PLN00411        248 -------WIIHFD----ITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG  315 (358)
T ss_pred             -------ceeccc----hHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence                   000011    013346777765 56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 011986          411 AALVLVGSLTVQIFGSS  427 (473)
Q Consensus       411 ~~lIl~g~~l~~~~~~~  427 (473)
                      +++|++|+++..+.+++
T Consensus       316 ~~LIl~Gv~l~~~~~~~  332 (358)
T PLN00411        316 GILITLGFYAVMWGKAN  332 (358)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999998865443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=7.8e-31  Score=259.02  Aligned_cols=270  Identities=17%  Similarity=0.147  Sum_probs=207.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHh
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGL  212 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al  212 (473)
                      .++++++++++++||.+++..|...++++|+.+.++|+.++.++++++..+++.++..++..+..++.++.++.+++.++
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~   82 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSL   82 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999998887643222222223333333444445556677777


Q ss_pred             hc----cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC------------CCCHHHHHHH
Q 011986          213 ET----SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS------------PPSVGDLLNF  275 (473)
Q Consensus       213 ~~----~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~------------~~~~G~~laL  275 (473)
                      ++    +++++++++.++.|+++.++++ ++|||+++++++|++++++|++++..++.            ....|+++++
T Consensus        83 ~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l  162 (295)
T PRK11689         83 GYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAF  162 (295)
T ss_pred             HHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHH
Confidence            54    5778899999999999999999 78999999999999999999999876532            1235999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHH
Q 011986          276 LSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALY  355 (473)
Q Consensus       276 ~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  355 (473)
                      +++++||.|.++.||..++.+   +.....   ....+...+.....+..   . .   .+.+         ..|..+++
T Consensus       163 ~aa~~~A~~~v~~k~~~~~~~---~~~~~~---~~~~~~l~~~~~~~~~~---~-~---~~~~---------~~~~~l~~  220 (295)
T PRK11689        163 IGAFIWAAYCNVTRKYARGKN---GITLFF---ILTALALWIKYFLSPQP---A-M---VFSL---------PAIIKLLL  220 (295)
T ss_pred             HHHHHHHHHHHHHhhccCCCC---chhHHH---HHHHHHHHHHHHHhcCc---c-c---cCCH---------HHHHHHHH
Confidence            999999999999999876544   443322   22223333322222110   0 0   1111         24666777


Q ss_pred             HHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          356 TGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       356 lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      .+ +.++++|.+|++++|+.++++++.+.|++|+++++++++++||++++.+++|+++|++|+++..+.+
T Consensus       221 ~~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        221 AA-AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HH-HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            77 5678999999999999999999999999999999999999999999999999999999998887643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=5.5e-30  Score=253.50  Aligned_cols=278  Identities=20%  Similarity=0.192  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHH-HHHHHHHHhhc
Q 011986          136 IILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSL-GYLMQALGLET  214 (473)
Q Consensus       136 ~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~-~~~l~~~al~~  214 (473)
                      .++.++++++||.++++.|...++++|..+.++|+.++.+.++++..+++   ..++..+..|+.... .+.+++.++++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~   82 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPK---VPLNLLLGYGLTISFGQFAFLFCAINF   82 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46688999999999999999999999999999999998777666543222   223333444554433 34567888988


Q ss_pred             -cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC---C-CCHHHHHHHHHHHHHHHHHHHH
Q 011986          215 -SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS---P-PSVGDLLNFLSAVFFGIHMLRT  288 (473)
Q Consensus       215 -~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~---~-~~~G~~laL~aal~~a~~~i~~  288 (473)
                       .+++.++++.++.|+++.++++ ++|||+++++++|++++++|+.++..++.   . ...|++++++++++|+.|.++.
T Consensus        83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~  162 (299)
T PRK11453         83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN  162 (299)
T ss_pred             cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence             5889999999999999999999 78999999999999999999998875421   1 2369999999999999999999


Q ss_pred             hhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 011986          289 EHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIE  368 (473)
Q Consensus       289 k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~  368 (473)
                      ||..++.+.........+...++.+.........+...... .         .+...+...|..++++|+++++++|.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-H---------SLVTIDMTTILSLMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-h---------hhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876544333344444444444433333322222211000 0         0011122358889999999999999999


Q ss_pred             HHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986          369 MAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS  426 (473)
Q Consensus       369 ~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~  426 (473)
                      ++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus       233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            9999999999999999999999999999999999999999999999999988876543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=3.7e-30  Score=253.88  Aligned_cols=273  Identities=16%  Similarity=0.224  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcc---cchhHHHHHHHHH-HHHHHHHHH
Q 011986          135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDV---HTRNAGFELGLWV-SLGYLMQAL  210 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~---~~~~~~ll~g~~~-~~~~~l~~~  210 (473)
                      -++..++..++||.++++.|...++++|.+++++|+.++.++++++...++++.   +.+......|.+. ..++.++++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456688889999999999999989999999999999999999888876655332   2233444556654 456778889


Q ss_pred             Hh-hccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecCC--CCCCHHHHHHHHHHHHHHHHHHH
Q 011986          211 GL-ETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSG--SPPSVGDLLNFLSAVFFGIHMLR  287 (473)
Q Consensus       211 al-~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~~--~~~~~G~~laL~aal~~a~~~i~  287 (473)
                      +. ++++++.++++.++.|+++.++++++|||+++++++|++++++|+.++..++  +....|++++++++++||.|.+.
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            98 9999999999999999999999997799999999999999999999886542  23357999999999999999999


Q ss_pred             HhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 011986          288 TEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWI  367 (473)
Q Consensus       288 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l  367 (473)
                      .||..++ +   +.....+++.+++++..++....+...  . ..+            +...|..+++++++++++++.+
T Consensus       169 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~------------~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        169 SSRLPLP-V---GMMAGAAEMLAAGVVLLIASLLSGERL--T-ALP------------TLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHhcCCC-c---chHHHHHHHHHHHHHHHHHHHHcCCcc--c-ccC------------CHHHHHHHHHHHHHHHHHHHHH
Confidence            9987543 2   234556777777777666654432211  0 000            1124788999999999999999


Q ss_pred             HHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986          368 EMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS  426 (473)
Q Consensus       368 ~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~  426 (473)
                      |++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..+.++
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998876544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.98  E-value=6.6e-30  Score=252.52  Aligned_cols=275  Identities=15%  Similarity=0.091  Sum_probs=204.4

Q ss_pred             hccchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc------ccchhH---HHHHHH
Q 011986          129 ASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD------VHTRNA---GFELGL  199 (473)
Q Consensus       129 ~~~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~------~~~~~~---~ll~g~  199 (473)
                      |+++.+|.+++++++++||.++++.|.. ++++|.+++++|+.++.+++++++..+++.      .+.++.   .+..++
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            3456789999999999999999999986 679999999999999998877776543221      111222   223345


Q ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHH
Q 011986          200 WVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSA  278 (473)
Q Consensus       200 ~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aa  278 (473)
                      ..+.++.++++|++++++++++++.++.|+++.++++ ++|||+++++++|++++++|++++..+++..   .+++++++
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa  158 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLA  158 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHH
Confidence            5677899999999999999999999999999999999 8899999999999999999999987543222   25789999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986          279 VFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI  358 (473)
Q Consensus       279 l~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~  358 (473)
                      ++||.|.+..|+..++.. .+......+...++.+.    .+....... .......  +          .+..+++.++
T Consensus       159 ~~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~--~----------~~~~~~~~~g  220 (296)
T PRK15430        159 FSFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIY----LFAIADSST-SHMGQNP--M----------SLNLLLIAAG  220 (296)
T ss_pred             HHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHH----HHHHccCCc-ccccCCc--H----------HHHHHHHHHH
Confidence            999999999988753211 12222222222222222    111111100 0000000  0          1223344444


Q ss_pred             HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      +.+.++|.+|++++++.++++++.+.|++|+++.+++++++||++++.+++|+++|++|+.+.....
T Consensus       221 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        221 IVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4677999999999999999999999999999999999999999999999999999999988776544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.97  E-value=3.7e-29  Score=246.86  Aligned_cols=271  Identities=18%  Similarity=0.204  Sum_probs=218.3

Q ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC--cccchhHHHHHHHHHHHHHHHH
Q 011986          131 KKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD--DVHTRNAGFELGLWVSLGYLMQ  208 (473)
Q Consensus       131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~--~~~~~~~~ll~g~~~~~~~~l~  208 (473)
                      ++.+++.+++++.++|+.++.+.|.+.++++|.++.++|++++.++++++...++.  +++.++..+..|++.+..+.++
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLF   88 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999988877654332  2344555667788888888899


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecCC----CCCCHHHHHHHHHHHHHHHH
Q 011986          209 ALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSG----SPPSVGDLLNFLSAVFFGIH  284 (473)
Q Consensus       209 ~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~~----~~~~~G~~laL~aal~~a~~  284 (473)
                      ++++++++++.++++.++.|+++.+++.   ||..+  +.++.++++|+.++..++    +....|++++++++++|+.|
T Consensus        89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~~---~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~  163 (293)
T PRK10532         89 YLSIQTVPLGIAVALEFTGPLAVALFSS---RRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIY  163 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHhc---CChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988763   65544  455678899999876432    22346999999999999999


Q ss_pred             HHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHH
Q 011986          285 MLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC  364 (473)
Q Consensus       285 ~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~  364 (473)
                      .+..||..++.+   +... .+..++++++..++....+.    .  .  .+.+         ..|..++++|+++++++
T Consensus       164 ~v~~r~~~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~----~--~--~~~~---------~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        164 ILSGQRAGAEHG---PATV-AIGSLIAALIFVPIGALQAG----E--A--LWHW---------SILPLGLAVAILSTALP  222 (293)
T ss_pred             HHHHHHHhccCC---chHH-HHHHHHHHHHHHHHHHHccC----c--c--cCCH---------HHHHHHHHHHHHHHHHH
Confidence            999999876544   4444 34455666666555443221    0  0  0111         13556789999999999


Q ss_pred             HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      |.+|++++++.++++++.+.+++|+++.+++++++||.+++.+++|+++|++|+++..+..++
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999876544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.97  E-value=5.6e-28  Score=234.19  Aligned_cols=254  Identities=20%  Similarity=0.287  Sum_probs=209.8

Q ss_pred             HhhHHHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHH-HHHHHHHHHHHhhccchhHHHHH
Q 011986          146 YASNIPVIKEVEA-ITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLW-VSLGYLMQALGLETSDAGRASFI  223 (473)
Q Consensus       146 wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~-~~~~~~l~~~al~~~~~~~asvi  223 (473)
                      ||.+++..|...+ ..++.++.+.|+..+.+++.++..++ ++++.+.+.+..|.+ ...++.++++|++++++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            8999999999865 68899999999999988888776555 344444455555544 57778999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC--CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 011986          224 SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG--SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDF  300 (473)
Q Consensus       224 ~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~--~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~  300 (473)
                      .++.|+++.++++ ++|||+++++++|++++++|++++..++  +....|++++++++++|+.+.+..|+..++.+ .+.
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~  158 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PEL  158 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chH
Confidence            9999999999999 7899999999999999999999887543  34457999999999999999999999876543 223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHH
Q 011986          301 LPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATET  380 (473)
Q Consensus       301 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~  380 (473)
                      .....+.+.++.++..+.....+....   .     .         ...|..++++++++++++|.+|++++++.+++++
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  221 (260)
T TIGR00950       159 LQFTGWVLLLGALLLLPFAWFLGPNPQ---A-----L---------SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA  221 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCC---c-----c---------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            344446677777777777655432110   0     0         1247778999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHH
Q 011986          381 AIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGS  418 (473)
Q Consensus       381 s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~  418 (473)
                      +.+.+++|+++.+++++++||++++.+++|+++++.|+
T Consensus       222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999985

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.96  E-value=9.4e-31  Score=240.07  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=225.9

Q ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhc----CcccchhHHHHHHHHHHHHHH
Q 011986          131 KKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRAR----DDVHTRNAGFELGLWVSLGYL  206 (473)
Q Consensus       131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~----~~~~~~~~~ll~g~~~~~~~~  206 (473)
                      ++.+|.++..++.++-..+.+..|.+  ..+|.+..-.|++.-.+...+....++    .+...|++++++|++++.+.+
T Consensus        35 ~p~~gl~l~~vs~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVSYFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhHHHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            56778888888855555555554543  478999998887766666665555443    345568888999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC---------------CCCHH
Q 011986          207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS---------------PPSVG  270 (473)
Q Consensus       207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~---------------~~~~G  270 (473)
                      +.|||++|++.++|++|.+++|+|+.+++| +|||++++.+.++.++.+.||+++..+..               ....|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            999999999999999999999999999999 99999999999999999999999987532               23578


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986          271 DLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPW  350 (473)
Q Consensus       271 ~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (473)
                      ...++.++++.|..+++.|+++|+.|   .+....|..++..+..++.....+....+.                ...+|
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h---~~msvsyf~~i~lV~s~I~~~~ig~~~lP~----------------cgkdr  253 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAH---AIMSVSYFSLITLVVSLIGCASIGAVQLPH----------------CGKDR  253 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhcccc---EEEEehHHHHHHHHHHHHHHhhccceecCc----------------cccce
Confidence            99999999999999999999999877   454555666666666666654444221111                12247


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986          351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS  428 (473)
Q Consensus       351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~  428 (473)
                      .+++.+|+++. ++|++.++++|++.|..++++.|++.++++++++++|||.|+++.|.|+++|+.+.+++...|...
T Consensus       254 ~l~~~lGvfgf-igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~  330 (346)
T KOG4510|consen  254 WLFVNLGVFGF-IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG  330 (346)
T ss_pred             EEEEEehhhhh-HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence            77889999988 999999999999999999999999999999999999999999999999999999999988765543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.96  E-value=3.7e-27  Score=221.39  Aligned_cols=271  Identities=18%  Similarity=0.182  Sum_probs=228.7

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC---------cccchhHHHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD---------DVHTRNAGFELGLWVS  202 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~---------~~~~~~~~ll~g~~~~  202 (473)
                      .++|+++.+.+.++||..+.+.|.+ ++.++.++..+|..++.++++.++...|+         +++......+.+++++
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~   83 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG   83 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3579999999999999999999997 78999999999999999998877765432         2223334456688899


Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC-CCCCCHHHHHHHHHHHH
Q 011986          203 LGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS-GSPPSVGDLLNFLSAVF  280 (473)
Q Consensus       203 ~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~-~~~~~~G~~laL~aal~  280 (473)
                      .++..|.||..+..+-++++.++++|++.++++. ++|||+++.|+++++++.+||...... |+.+    +.++.-+++
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp----wval~la~s  159 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP----WVALALALS  159 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc----HHHHHHHHH
Confidence            9999999999999999999999999999999999 899999999999999999999987764 5555    678888899


Q ss_pred             HHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHH
Q 011986          281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIF  359 (473)
Q Consensus       281 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~  359 (473)
                      |+.|..+-|++     +++..+....+++...+.++.+.+..+..+. .......              .|.+ +..++.
T Consensus       160 f~~Ygl~RK~~-----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~--------------~~~L-Lv~aG~  219 (293)
T COG2962         160 FGLYGLLRKKL-----KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANS--------------LWLL-LVLAGL  219 (293)
T ss_pred             HHHHHHHHHhc-----CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCch--------------HHHH-HHHhhH
Confidence            99999885444     5678889999999999999998887776553 1111111              2444 445555


Q ss_pred             HHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          360 STGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       360 ~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      .++++..++..|.++++-+..+.++|++|....+++++++||+++..++.+.+.|+.|.+++.....+
T Consensus       220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~  287 (293)
T COG2962         220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY  287 (293)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56699999999999999999999999999999999999999999999999999999999998876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=1.5e-25  Score=225.94  Aligned_cols=283  Identities=12%  Similarity=0.102  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcC---cc----cchhHHHHHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEAITD-PSAFTVVRFALSAIPFIPFVLRARD---DV----HTRNAGFELGLWVSLGY  205 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~~~~~~~~~~~---~~----~~~~~~ll~g~~~~~~~  205 (473)
                      +-.++.+.-..+-.......|.+++.++ |+.++.+|++++.+++.+++..+.+   +.    ..++..+..|++....+
T Consensus        49 ~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~  128 (350)
T PTZ00343         49 KLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVH  128 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445667799999999 9999999999998876655432211   11    13445678899888888


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCC-HHHHHHHHHHHHHHH
Q 011986          206 LMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPS-VGDLLNFLSAVFFGI  283 (473)
Q Consensus       206 ~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~-~G~~laL~aal~~a~  283 (473)
                      ...+.|+++++++.++++..+.|++++++++ ++|||++++++++++++++||++....+..++ .|+++++++++++++
T Consensus       129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~  208 (350)
T PTZ00343        129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSL  208 (350)
T ss_pred             HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999 89999999999999999999999887654444 599999999999999


Q ss_pred             HHHHHhhhhhcCC----CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHH
Q 011986          284 HMLRTEHISRSTN----KKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIF  359 (473)
Q Consensus       284 ~~i~~k~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~  359 (473)
                      |.+..|+..++.+    +.++.....+..++++++.+|+....+.......       |...........+..+++ .++
T Consensus       209 ~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~-------~~~~~~~~~~~~~~~~l~-~i~  280 (350)
T PTZ00343        209 RSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPV-------WTNYTANMTNYTKGIIIF-KIF  280 (350)
T ss_pred             HHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHhhhcccccchHHHHH-HHH
Confidence            9999999876543    3456666677788888888888764432110000       000000000001223344 455


Q ss_pred             HHHHHHHHHHH----HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          360 STGLCLWIEMA----AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       360 ~~~~~~~l~~~----al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      .+++.+.+|+.    +++++++.+.++..+++|+++++++++++||++++.+++|++++++|++++++.
T Consensus       281 ~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        281 FSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            56788999985    999999999999999999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.95  E-value=2.8e-26  Score=227.47  Aligned_cols=273  Identities=12%  Similarity=0.083  Sum_probs=207.6

Q ss_pred             hHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHh--hcC---cccchhHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 011986          148 SNIPVIKEVEAI-TDPSAFTVVRFALSAIPFIPFVLR--ARD---DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRAS  221 (473)
Q Consensus       148 ~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~~~~~~~~--~~~---~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~as  221 (473)
                      ...+++|.+.++ ..|..+++.|+.++.+.+.+....  +++   +++.++..+..|++++.++.+.++++++++++.++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~   95 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH   95 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            334678999887 569999999999998777665221  111   33456667788999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 011986          222 FISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKD  299 (473)
Q Consensus       222 vi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~-~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~  299 (473)
                      ++..+.|++++++++ ++|||+++++++|++++++|+++....+..+ ..|++++++++++|++|.+..||..++ .+.+
T Consensus        96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~  174 (302)
T TIGR00817        96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSLD  174 (302)
T ss_pred             HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC
Confidence            999999999999999 8899999999999999999998766544333 459999999999999999999988662 2356


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChh
Q 011986          300 FLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMF-WDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSAT  378 (473)
Q Consensus       300 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~  378 (473)
                      +.....++...+++.+.|+....+.......      .+... +.+.....+...++.+.....+.+.++++++++.+++
T Consensus       175 ~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~  248 (302)
T TIGR00817       175 KTNLYAYISIMSLFLLSPPAFITEGPPFLPH------GFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL  248 (302)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHcchHHHHH------HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            7888999998998888888765543211100      00000 0000000122122333323333345666899999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          379 ETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       379 ~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      ++++..+++|+++++++++++||++++.+++|++++++|+++++..|.+
T Consensus       249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999876543

specificities overlap.

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=2.1e-25  Score=215.85  Aligned_cols=241  Identities=12%  Similarity=0.109  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC------ccc--chh----HHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD------DVH--TRN----AGFELGLWV  201 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~------~~~--~~~----~~ll~g~~~  201 (473)
                      +|++++++++++||.++++.|.+ ++++|.+++++|++++.++++++...+++      +.+  .++    ...+.|+++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            47899999999999999999984 57999999999999999887776533221      111  111    234567778


Q ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHH
Q 011986          202 SLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVF  280 (473)
Q Consensus       202 ~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~  280 (473)
                      +.++.++++|++++++++++++.++.|+++.++++ ++|||++++++++++++++|++++..+++..   .+++++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~  157 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS  157 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence            88899999999999999999999999999999999 8999999999999999999999876543222   1568999999


Q ss_pred             HHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHH
Q 011986          281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFS  360 (473)
Q Consensus       281 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~  360 (473)
                      |++|.+..|+..++ +   ...... ..+.......+.....+... ......             ...|..++++|++ 
T Consensus       158 ~a~~~i~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~l~~~g~~-  217 (256)
T TIGR00688       158 FTAYGLIRKALKNT-D---LAGFCL-ETLSLMPVAIYYLLQTDFAT-VQQTNP-------------FPIWLLLVLAGLI-  217 (256)
T ss_pred             HHHHHHHHhhcCCC-C---cchHHH-HHHHHHHHHHHHHHHhccCc-ccccCc-------------hhHHHHHHHHHHH-
Confidence            99999999987543 2   111111 11111222222211111110 000000             0136777788876 


Q ss_pred             HHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHH
Q 011986          361 TGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFI  398 (473)
Q Consensus       361 ~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il  398 (473)
                      +.++|.+|++++++.++++++++.|++|+++.+++.++
T Consensus       218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            77999999999999999999999999999999999865

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.94  E-value=1e-24  Score=214.02  Aligned_cols=267  Identities=15%  Similarity=0.126  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh--cCcc-----cchhHHHHHHHHHHHHHHHH
Q 011986          136 IILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA--RDDV-----HTRNAGFELGLWVSLGYLMQ  208 (473)
Q Consensus       136 ~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~--~~~~-----~~~~~~ll~g~~~~~~~~l~  208 (473)
                      +++.++++++|+..++..|...+.-++.  .+++...+.+.+.++..++  +...     +.+...+..++....++.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999665544443  4667777777777766553  1111     11223344566677888999


Q ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC--CCCHHHHHHHHHHHHHHHHH
Q 011986          209 ALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS--PPSVGDLLNFLSAVFFGIHM  285 (473)
Q Consensus       209 ~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~--~~~~G~~laL~aal~~a~~~  285 (473)
                      ++|+++.+++.++++.++.|+++.++++ ++|||+++++++|++++++|++++..++.  ....|+.++++++++|++|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999 89999999999999999999998775432  23467889999999999999


Q ss_pred             HHHhhhhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHH
Q 011986          286 LRTEHISRSTNKK-DFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC  364 (473)
Q Consensus       286 i~~k~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~  364 (473)
                      ++.|+..++.++. +......+.....++...+.....+.. ..   ...            ...+..+++.+++.++++
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~------------~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SM---FPY------------ARQILPSATLGGLMIGGA  224 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-ch---hhh------------HHHHHHHHHHHHHHHHHH
Confidence            9988765433321 112222222222212211211111110 00   000            012556788888999999


Q ss_pred             HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHH
Q 011986          365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT  420 (473)
Q Consensus       365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l  420 (473)
                      |.+|++++++.++++++.+.|++|+++.+++++++||+++..+++|+++|++|+++
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=4e-22  Score=195.46  Aligned_cols=271  Identities=24%  Similarity=0.323  Sum_probs=211.6

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHhhc--Ccccch---hHHHHHHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAI-TDPSAFTVVRFALSAIPFIPFVLRAR--DDVHTR---NAGFELGLWVSLGY  205 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~~~~~~~~~~--~~~~~~---~~~ll~g~~~~~~~  205 (473)
                      ...+....++..+.|+.+....|...++ .++....+.|...+.+...+...+++  .....+   ...+..++....++
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            4567788888889999999999998776 67777778899999888544444332  112122   23344455567778


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHH-H-hcCcCchHHHHHHHHHHHHhheeecCCCCC----CHHHHHHHHHHH
Q 011986          206 LMQALGLETSDAGRASFISMFTVIVVPLLDG-M-LGAIVPARTWFGAVMSILGVALLESSGSPP----SVGDLLNFLSAV  279 (473)
Q Consensus       206 ~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~-l~er~s~~~~~g~~lal~GV~li~~~~~~~----~~G~~laL~aal  279 (473)
                      .+++.++++++++.++++.++.|+++.++++ + +|||++++++++++++++|++++..++...    ..|+++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996 4 499999999999999999999999876543    479999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCCchhHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986          280 FFGIHMLRTEHISRSTNKKDFLPLLG-YEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI  358 (473)
Q Consensus       280 ~~a~~~i~~k~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~  358 (473)
                      +++++.+..|+.. +.+   +..... +...  ...............     .+  .         ....|..+.+.|+
T Consensus       165 ~~a~~~~~~~~~~-~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~--~---------~~~~~~~~~~~g~  222 (292)
T COG0697         165 LWALYTALVKRLS-RLG---PVTLALLLQLL--LALLLLLLFFLSGFG-----AP--I---------LSRAWLLLLYLGV  222 (292)
T ss_pred             HHHHHHHHHHHhc-CCC---hHHHHHHHHHH--HHHHHHHHHHhcccc-----cc--C---------CHHHHHHHHHHHH
Confidence            9999999999886 322   333333 3332  111111111111111     00  0         1124788899999


Q ss_pred             HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      +++++++.+|++++++.++..++.+.+++|+++.+++++++||.++..+++|+++|++|+++....
T Consensus       223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999899999999999999999999999999999999999999999999999999999999988765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=8.4e-23  Score=201.50  Aligned_cols=280  Identities=18%  Similarity=0.179  Sum_probs=216.4

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhc-cCC-hHHHHHHHHHHHHHHHHHHHHhhcCc-------ccchhHHHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEA-ITD-PSAFTVVRFALSAIPFIPFVLRARDD-------VHTRNAGFELGLWVS  202 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~-~~~-p~~~~~~R~~~a~l~~~~~~~~~~~~-------~~~~~~~ll~g~~~~  202 (473)
                      ..+.+++.-+.+++-..+......+.+ +.+ |..-.++-++.-.++..++..+|+..       ++.+++.++.+++-.
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv   90 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV   90 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence            345677777778888888888877743 233 55555666655555555555544322       234555678899999


Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC----------CCCCHHH
Q 011986          203 LGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG----------SPPSVGD  271 (473)
Q Consensus       203 ~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~----------~~~~~G~  271 (473)
                      .++++.+.|++|++++.++++....-.+++++++ ++|+|+++.+++|++++++|++++...|          .....|+
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GD  170 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGD  170 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhH
Confidence            9999999999999999999999999999999999 8999999999999999999999877542          2346899


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHH
Q 011986          272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWI  351 (473)
Q Consensus       272 ~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (473)
                      ++++++++.||+++++.++..++.+   ...+.++..+++.++..+.....+......    ..|.+.          ..
T Consensus       171 ll~l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~----~~w~~~----------~~  233 (334)
T PF06027_consen  171 LLALLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIES----IHWTSQ----------VI  233 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhc----cCCChh----------hH
Confidence            9999999999999999999888655   566777778888888877766554322111    112211          22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986          352 PALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS  428 (473)
Q Consensus       352 ~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~  428 (473)
                      .++....++..+-|.+....++..+|+..++-..+..+++++++++++|+.+++..++|.++|++|.+++....++.
T Consensus       234 ~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  234 GLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            23333334455667788889999999999999999999999999999999999999999999999999988765543

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.89  E-value=6.8e-21  Score=174.46  Aligned_cols=268  Identities=21%  Similarity=0.201  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHh
Q 011986          135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGL  212 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al  212 (473)
                      .+++++.+.+.--....+.|.+...++|..++.+|..++.++++++++..  +..++++++.+..|......+++||.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666666666677889988999999999999999999998887643  3456778888889999999999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecC----CCCCCHHHHHHHHHHHHHHHHHHHH
Q 011986          213 ETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESS----GSPPSVGDLLNFLSAVFFGIHMLRT  288 (473)
Q Consensus       213 ~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~----~~~~~~G~~laL~aal~~a~~~i~~  288 (473)
                      +..|.+.+..|-|+-|+...++..   +|.  +..+-+.+++.|+.++...    +..+..|..+++.++.||+.|.+..
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~~s---Rr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G  167 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALLSS---RRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG  167 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHHhc---cch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence            999999999999999998877543   333  3445566678888776653    3456799999999999999999999


Q ss_pred             hhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 011986          289 EHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIE  368 (473)
Q Consensus       289 k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~  368 (473)
                      +|..+..+   .-....+.+.+.+++.+|+........        .+.+         .-...-+.+|++++.+.|.+-
T Consensus       168 ~r~g~~~~---g~~g~a~gm~vAaviv~Pig~~~ag~~--------l~~p---------~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         168 QRAGRAEH---GTAGVAVGMLVAALIVLPIGAAQAGPA--------LFSP---------SLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             chhcccCC---CchHHHHHHHHHHHHHhhhhhhhcchh--------hcCh---------HHHHHHHHHHHHhcccchHHH
Confidence            99987555   344666677778888777755332211        1111         125566889999999999999


Q ss_pred             HHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          369 MAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       369 ~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      +.++++.+....+.+..++|.++.+.|++++||.+++.||+|++.|+++..-..+.-+|
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999999999999999999999999999999999999999999998766654433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.87  E-value=1.2e-19  Score=178.60  Aligned_cols=264  Identities=14%  Similarity=0.141  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc----ccchhHHHHHHHHHHHHHHHHHH
Q 011986          135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD----VHTRNAGFELGLWVSLGYLMQAL  210 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~----~~~~~~~ll~g~~~~~~~~l~~~  210 (473)
                      ++++.++++++||.+.+..|... +.++.++.  |..++.+++..+....+.+    ++.+...++.|++...++++++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            57899999999999999999875 78887775  7777777766554443322    22233455667778888899999


Q ss_pred             HhhccchhHHHHHHH-HHHHHHHHHHH-HhcCcCchHH----HHHHHHHHHHhheeecCC---------CCCCHHHHHHH
Q 011986          211 GLETSDAGRASFISM-FTVIVVPLLDG-MLGAIVPART----WFGAVMSILGVALLESSG---------SPPSVGDLLNF  275 (473)
Q Consensus       211 al~~~~~~~asvi~~-l~Pl~~~ll~~-~l~er~s~~~----~~g~~lal~GV~li~~~~---------~~~~~G~~laL  275 (473)
                      ++++++++.+..+.+ +.+++..+.+. ++||+.++++    .+|++++++|++++...+         .....|.++++
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l  158 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL  158 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence            999999999999988 88888888898 8999999999    999999999999987532         11258999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHH
Q 011986          276 LSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALY  355 (473)
Q Consensus       276 ~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  355 (473)
                      +++++|+.|.+..|+..  .++.+......+..++++++..+.. .  . .     .+  +.         .+.+...+.
T Consensus       159 ~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~-~--~-~-----~~--~~---------~~~~~~~~~  216 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGH-I--L-A-----KP--LK---------KYAILLNIL  216 (290)
T ss_pred             HHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHH-h--c-c-----cc--hH---------HHHHHHHHH
Confidence            99999999999998762  3333322224444444444333322 0  0 0     00  00         012333444


Q ss_pred             HHHHHHHHHHHHHHHHhc-ccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhH----HHHHHHHHHHHHHhhc
Q 011986          356 TGIFSTGLCLWIEMAAMR-DVSATETAIIYGLEPVWGAGFAWFILGERWGATGW----LGAALVLVGSLTVQIF  424 (473)
Q Consensus       356 lg~~~~~~~~~l~~~al~-~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~----~G~~lIl~g~~l~~~~  424 (473)
                      .|++ .++++.+|..+.+ +.+++.++.+.+++|+.+.+++++++||..++.++    +|+++|+.|+++....
T Consensus       217 ~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       217 PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            7777 6899999999999 99999999999999999999999999999999999    9999999999887653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.86  E-value=2.8e-20  Score=179.37  Aligned_cols=286  Identities=17%  Similarity=0.179  Sum_probs=233.1

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHH----Hhh----c---------C-----
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAIT---DPSAFTVVRFALSAIPFIPFV----LRA----R---------D-----  186 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~---~p~~~~~~R~~~a~l~~~~~~----~~~----~---------~-----  186 (473)
                      ...|+.++++..++|-.+.-+.+.+.+.-   .|+.+++.....-.+.+.++.    .++    |         .     
T Consensus        12 ~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d~e   91 (416)
T KOG2765|consen   12 WTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEADAE   91 (416)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhhhh
Confidence            45899999999999999999999886533   488888877665555554433    111    0         0     


Q ss_pred             ------------------------------c------------------ccch---------------hHHHHHHHHHHH
Q 011986          187 ------------------------------D------------------VHTR---------------NAGFELGLWVSL  203 (473)
Q Consensus       187 ------------------------------~------------------~~~~---------------~~~ll~g~~~~~  203 (473)
                                                    +                  .+.+               +..+..+.+.+.
T Consensus        92 ~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~lWF~  171 (416)
T KOG2765|consen   92 GYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPLWFL  171 (416)
T ss_pred             ccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                                          0                  0011               123455777889


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC---------CCCHHHHH
Q 011986          204 GYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS---------PPSVGDLL  273 (473)
Q Consensus       204 ~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~---------~~~~G~~l  273 (473)
                      +++.++.|+.+++++..+++..++-+|+.+++. +.+||+++.+.++++++++||+++..+++         ....|+++
T Consensus       172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ll  251 (416)
T KOG2765|consen  172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLL  251 (416)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHH
Confidence            999999999999999999999999999999999 66899999999999999999999986532         34689999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHH
Q 011986          274 NFLSAVFFGIHMLRTEHISRST-NKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIP  352 (473)
Q Consensus       274 aL~aal~~a~~~i~~k~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (473)
                      ++++|+.||.|.++.||-..+. .+++.-.++++..++..++++|.+++........+..|...            ....
T Consensus       252 aL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~------------q~~~  319 (416)
T KOG2765|consen  252 ALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSST------------QFSL  319 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCc------------eeEe
Confidence            9999999999999999877666 57888888888889999999988777665544444443332            3456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986          353 ALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP  429 (473)
Q Consensus       353 ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~  429 (473)
                      ++..+.++++++-++|.+|+-..++..+++.+.+++..+++.+.++-|..+++.+++|.+.|++|.+++++......
T Consensus       320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~  396 (416)
T KOG2765|consen  320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK  396 (416)
T ss_pred             eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence            78888999999999999999999999999999999999999999988999999999999999999999988665443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.74  E-value=3.3e-15  Score=148.19  Aligned_cols=254  Identities=17%  Similarity=0.180  Sum_probs=202.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhc---CcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-
Q 011986          161 DPSAFTVVRFALSAIPFIPFVLRAR---DDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-  236 (473)
Q Consensus       161 ~p~~~~~~R~~~a~l~~~~~~~~~~---~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-  236 (473)
                      .|..+++..+....++..++....+   .++..++..+..+++..++..+.+.|++|++...-.++....|+++++++. 
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            3889999999988888777766554   233446667888999999999999999999999999999999999999999 


Q ss_pred             HhcCcCchHHHHHHHHHHHHhheeecCCC-----C------CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHH
Q 011986          237 MLGAIVPARTWFGAVMSILGVALLESSGS-----P------PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLG  305 (473)
Q Consensus       237 ~l~er~s~~~~~g~~lal~GV~li~~~~~-----~------~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~  305 (473)
                      ++|+|.++++++++++..+|+++....+.     .      ...|+++.+++.++.|...+..+|+.++. +.++....+
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mf  189 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMF  189 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHH
Confidence            89999999999999999999999875431     1      12399999999999999999999997765 456677888


Q ss_pred             HHHHHHHHHHHHHHHH--hccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHH
Q 011986          306 YEVCVIALLSAVWYFI--GGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAI  382 (473)
Q Consensus       306 ~~~l~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~  382 (473)
                      +..+++.++.++....  .+.... ....          .+  ....+..++...+.+. +++.+.++..++.++...++
T Consensus       190 y~n~~~~~~~~~~~~~l~~~~~~~~~~f~----------~~--~p~~~~~l~~~s~~~~-~g~~~i~~~~~~~~al~~t~  256 (303)
T PF08449_consen  190 YTNLFSLPFLLILLFLLPTGEFRSAIRFI----------SA--HPSVLLYLLLFSLTGA-LGQFFIFYLIKKFSALTTTI  256 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHH----------HH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhhhh
Confidence            8888888887777666  222110 0000          00  0112444455555444 77777778899999999999


Q ss_pred             HhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986          383 IYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS  428 (473)
Q Consensus       383 l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~  428 (473)
                      +..+.-+++++++++++|+++++.+|+|++++++|..+....++++
T Consensus       257 v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  257 VTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999998876553

; GO: 0055085 transmembrane transport

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.69  E-value=2.2e-16  Score=154.12  Aligned_cols=268  Identities=14%  Similarity=0.139  Sum_probs=213.4

Q ss_pred             HHHHHHhhc--cCC-hHHHHHHHHHHHHHHHHHHHHhhcCc------ccchhHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011986          150 IPVIKEVEA--ITD-PSAFTVVRFALSAIPFIPFVLRARDD------VHTRNAGFELGLWVSLGYLMQALGLETSDAGRA  220 (473)
Q Consensus       150 ~~~~k~~~~--~~~-p~~~~~~R~~~a~l~~~~~~~~~~~~------~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~a  220 (473)
                      ....|.+++  +++ |..++.++.+.+.+.++.....+..+      ...++..+.+|++.+++..+-+.|+.+.+++..
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~  112 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY  112 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence            445588877  555 88888887777777776665544221      134667788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhh-cCCC
Q 011986          221 SFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISR-STNK  297 (473)
Q Consensus       221 svi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~-~~G~~laL~aal~~a~~~i~~k~~~~-~~~~  297 (473)
                      ..+..++|.+++++++ +.+|+.++..++.++....||.+....+..+ ..|...++.+.+.++..+++.+++.+ +...
T Consensus       113 q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~  192 (316)
T KOG1441|consen  113 QTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGES  192 (316)
T ss_pred             HHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999 7899999999999999999999999877654 57999999999999999999999885 3456


Q ss_pred             CCchhHHHHHHHHHHHHHH-HHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 011986          298 KDFLPLLGYEVCVIALLSA-VWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVS  376 (473)
Q Consensus       298 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~  376 (473)
                      .|+++...++.-...+.++ |+....+.... .......|.+.          ....++..++.... +..-+..+++.+
T Consensus       193 ~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~sv~~f~~-Nls~f~~ig~tS  260 (316)
T KOG1441|consen  193 LNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT----------FLILLLNSVLAFLL-NLSAFLVIGRTS  260 (316)
T ss_pred             cCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh----------hHHHHHHHHHHHHH-HHHHHHHHcccC
Confidence            8899999999988888888 77665544322 11111112111          23344444555533 344445999999


Q ss_pred             hhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986          377 ATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP  429 (473)
Q Consensus       377 a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~  429 (473)
                      |.+.++...+.-++.++.++++|+++.++.+..|+++.++|++++...|.++.
T Consensus       261 alT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~  313 (316)
T KOG1441|consen  261 ALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK  313 (316)
T ss_pred             chhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999998766543

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.56  E-value=4.3e-14  Score=116.77  Aligned_cols=129  Identities=21%  Similarity=0.209  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC-------cccchhHHHHHHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD-------DVHTRNAGFELGLWVSLGYL  206 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~-------~~~~~~~~ll~g~~~~~~~~  206 (473)
                      ...+++++++++||+..++.|...++++|..-+++|..+..++++.++...++       ..+.+....+.|+....++.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999988887653       34556666778999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      +||.|++...++.+..+..++|++++++++ ++|||++..+|+|+++..+|++++..
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999 99999999999999999999998763

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.45  E-value=7.5e-13  Score=109.51  Aligned_cols=136  Identities=20%  Similarity=0.300  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986          270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP  349 (473)
Q Consensus       270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (473)
                      ..++++++|+++++..++.|--.+   ++||......+.++...++..+....+........++..              
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~---~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~--------------   66 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE---GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKS--------------   66 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc---ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcce--------------
Confidence            468999999999999999885544   456888888999998888888888777655543333332              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                      |.. +.++++.++++..+|++|++..+++++.++.-++|+++++++++++||+++..+|+|+++|++|++++.+
T Consensus        67 ~lf-lilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          67 WLF-LILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             ehh-hhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            444 4455578889999999999999999999999999999999999999999999999999999999887653

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=4.8e-11  Score=114.49  Aligned_cols=284  Identities=12%  Similarity=0.080  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHH--HHHHHHHHHHHHHHHhh-----cCcccchhHHHHHHHHHHHHHH
Q 011986          135 SIILLNAITVVYASNIPVIKEVEAITD-PSAFTV--VRFALSAIPFIPFVLRA-----RDDVHTRNAGFELGLWVSLGYL  206 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~--~R~~~a~l~~~~~~~~~-----~~~~~~~~~~ll~g~~~~~~~~  206 (473)
                      .+..++.-++.=-++.+..|.++...+ |..+..  .+++...+.+...-..+     .-+++..+.++...++.....+
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~   92 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLF   92 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHH
Confidence            345555555555566777798876544 444444  77776655554443222     1234556677888888888888


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCCH-HHHHHHHHHHHHHHH
Q 011986          207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPSV-GDLLNFLSAVFFGIH  284 (473)
Q Consensus       207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~-G~~laL~aal~~a~~  284 (473)
                      .-..+++|.++...+++....|+++++... ++|.|+++..|.++....+|......++..++. |+.+++...+.-+.+
T Consensus        93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~  172 (314)
T KOG1444|consen   93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAF  172 (314)
T ss_pred             HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999 899999999999999999999998888776655 899999999999999


Q ss_pred             HHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHH
Q 011986          285 MLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC  364 (473)
Q Consensus       285 ~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~  364 (473)
                      .+..|+-.+.. +.+-..+..|..++..+.+.....+.+....... ..+.        |.....|..++.-++++.++.
T Consensus       173 ~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~-~~~~--------~~~~~~~~~~~lScv~gf~is  242 (314)
T KOG1444|consen  173 VVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELDALSL-NFDN--------WSDSSVLVVMLLSCVMGFGIS  242 (314)
T ss_pred             HHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchHHHHh-hccc--------ccchhHHHHHHHHHHHHHHHH
Confidence            99999775543 3455667788888888888887777665331111 1100        112224677788888888888


Q ss_pred             HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986          365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP  429 (473)
Q Consensus       365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~  429 (473)
                      |..+. ..+..++.+.++.....-..+.+.+.+++|++.++...+|..+=++|.++++..+.+++
T Consensus       243 y~s~~-ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k  306 (314)
T KOG1444|consen  243 YTSFL-CTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK  306 (314)
T ss_pred             HHHHH-HHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence            77764 88999999999999778888888888888899999999999999999999988765443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.41  E-value=5.4e-10  Score=108.89  Aligned_cols=276  Identities=12%  Similarity=0.101  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhc-c---CChHHHHHHHHHHHHHHHHHHHHhhcCc-----cc--------ch---hH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEA-I---TDPSAFTVVRFALSAIPFIPFVLRARDD-----VH--------TR---NA  193 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~-~---~~p~~~~~~R~~~a~l~~~~~~~~~~~~-----~~--------~~---~~  193 (473)
                      ..++.++...+.++......|+... +   +-|...++.-=.+-.+++..++++..+.     .+        .+   ..
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            3466777778888888889888732 2   5577777777666777776666655211     11        01   11


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC---------
Q 011986          194 GFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS---------  263 (473)
Q Consensus       194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~---------  263 (473)
                      ...-+++..+.+.++|.++.+.+++...+.+.+-.+.|+++.. +|++|++++||.++++.++|+.++-.+         
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            1223566777778999999999999999999999999999999 899999999999999999999987621         


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhh
Q 011986          264 ---GSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTM  340 (473)
Q Consensus       264 ---~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (473)
                         +..+..|....+.+++.-++..+..+|+.|+.. .+.....--..+++.++.....+..+........-...|.   
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s---  250 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYS---  250 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc---
Confidence               123457999999999999999999999987644 2222222222333333333333333322221011111111   


Q ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHH
Q 011986          341 FWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT  420 (473)
Q Consensus       341 ~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l  420 (473)
                            ...|..++..++-+-     +-..-+++.+-..=+....+..+++.+.++.+++-.++....+|+.+++.++.+
T Consensus       251 ------~~vw~vVl~~a~gGL-----lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l  319 (345)
T KOG2234|consen  251 ------SIVWLVVLLNAVGGL-----LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL  319 (345)
T ss_pred             ------HHHHHHHHHHhccch-----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence                  113444444444333     333456777777777778888999999999999999999999999999999999


Q ss_pred             Hhhc
Q 011986          421 VQIF  424 (473)
Q Consensus       421 ~~~~  424 (473)
                      +...
T Consensus       320 Y~~~  323 (345)
T KOG2234|consen  320 YSLY  323 (345)
T ss_pred             hhcC
Confidence            8843

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.40  E-value=9.4e-11  Score=109.51  Aligned_cols=282  Identities=17%  Similarity=0.154  Sum_probs=197.2

Q ss_pred             HHHHHHHHHhhHHHHHHHhh----ccCC----hHHHHHHHHHHHHHHHHHHHHhhcCc-----------------ccchh
Q 011986          138 LLNAITVVYASNIPVIKEVE----AITD----PSAFTVVRFALSAIPFIPFVLRARDD-----------------VHTRN  192 (473)
Q Consensus       138 l~l~a~~~wg~~~~~~k~~~----~~~~----p~~~~~~R~~~a~l~~~~~~~~~~~~-----------------~~~~~  192 (473)
                      +.++....-+.+-+..|++.    ++-|    |+.....-++-=++++..+.+.+.+.                 .+.+.
T Consensus         7 ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p   86 (372)
T KOG3912|consen    7 LSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP   86 (372)
T ss_pred             hhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc
Confidence            33444444456677788873    2322    54444444444445555555444210                 01111


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC------
Q 011986          193 -AGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG------  264 (473)
Q Consensus       193 -~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~------  264 (473)
                       ..+.-+++-..+..++|.++.+++++.-.++....-+|+.+++. +|+++++.++|+|+....+|++.+...+      
T Consensus        87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~  166 (372)
T KOG3912|consen   87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD  166 (372)
T ss_pred             ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence             22334777788889999999999999999999999999999999 9999999999999999999999876532      


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCCC---
Q 011986          265 -----SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGT-QGSDPSS---  335 (473)
Q Consensus       265 -----~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~---  335 (473)
                           +....|+++.+.+-+.-|+.+++-+|..++. .++|+...+|+.+++.++...+.+.....+.. .+.....   
T Consensus       167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~  245 (372)
T KOG3912|consen  167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL  245 (372)
T ss_pred             CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence                 2345799999999999999999999987765 58899999999999876665555443332222 1111111   


Q ss_pred             cchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH----HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHH
Q 011986          336 WTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMA----AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGA  411 (473)
Q Consensus       336 ~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~----al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~  411 (473)
                      ..|...|...+..   ..++++..++.+.-.++|.    --+..++++-.++..+...+..+++..+..|.+...|+.|.
T Consensus       246 eD~~~~~~~~~e~---p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGF  322 (372)
T KOG3912|consen  246 EDWGDAFAALQES---PSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGF  322 (372)
T ss_pred             hhHHHHHHHhcCC---chhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            1222222222222   2344444455455555553    35667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 011986          412 ALVLVGSLTVQI  423 (473)
Q Consensus       412 ~lIl~g~~l~~~  423 (473)
                      ++.+.|++++.-
T Consensus       323 liLi~Gi~lY~~  334 (372)
T KOG3912|consen  323 LILIMGIILYNQ  334 (372)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988653

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.40  E-value=6.9e-11  Score=111.92  Aligned_cols=258  Identities=13%  Similarity=0.023  Sum_probs=186.1

Q ss_pred             cCC-hHHHHHHHHHHHHHHHHHHHHhhcC---c---ccc----hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011986          159 ITD-PSAFTVVRFALSAIPFIPFVLRARD---D---VHT----RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFT  227 (473)
Q Consensus       159 ~~~-p~~~~~~R~~~a~l~~~~~~~~~~~---~---~~~----~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~  227 (473)
                      .++ |..++...+++-+++........+.   +   .-.    .++....|+..+....+-+++++|++++.-++.....
T Consensus        41 ~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSs  120 (349)
T KOG1443|consen   41 NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSS  120 (349)
T ss_pred             CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccH
Confidence            455 8888888888777776655543321   1   112    2344467777777788999999999999999999999


Q ss_pred             HHHHHHHHHHhc-CcCchHHHHHHHHHHHHhheeecCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CCCchhH
Q 011986          228 VIVVPLLDGMLG-AIVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISRSTN--KKDFLPL  303 (473)
Q Consensus       228 Pl~~~ll~~~l~-er~s~~~~~g~~lal~GV~li~~~~~~~-~~G~~laL~aal~~a~~~i~~k~~~~~~~--~~~~~~~  303 (473)
                      ++|+.+++.++| ||+++.-.+-+++..+|+++.......+ ..|..+.+++.++-++.....+++.++.+  .-+|+..
T Consensus       121 i~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~t  200 (349)
T KOG1443|consen  121 ILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDT  200 (349)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeee
Confidence            999999999776 9999999999999999999998865544 57999999999999999888888877654  2356667


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHH
Q 011986          304 LGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAII  383 (473)
Q Consensus       304 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l  383 (473)
                      .....-...+.++|..+.+++.........  +...+...  -......+...|.+++......+ .-+.+.+..+.++.
T Consensus       201 i~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~--f~~~d~~~--~~rv~g~i~l~g~laF~l~~sEf-lLl~~Ts~ltlSIa  275 (349)
T KOG1443|consen  201 IFHLQPWMSIGLLPLSLLFEGLHLITSSSI--FRFQDTGL--ILRVIGLISLGGLLAFLLEFSEF-LLLSRTSSLTLSIA  275 (349)
T ss_pred             HHHhhhHHHHHHHHHHHHHcccccchhhhH--HHhcCccH--HHHHHHHHHHHHHHHHHHHHHHH-heeeeccceeeeHH
Confidence            777667777777777776665433211110  00000000  00012222223333333333333 36788888899999


Q ss_pred             hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986          384 YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV  421 (473)
Q Consensus       384 ~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~  421 (473)
                      .-..-+.+.+++.++.++.++...|.|.++.+.|+.+.
T Consensus       276 GI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  276 GIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998877

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.38  E-value=7.6e-11  Score=112.70  Aligned_cols=208  Identities=16%  Similarity=0.149  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC-----
Q 011986          192 NAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS-----  265 (473)
Q Consensus       192 ~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~-----  265 (473)
                      .+..+-+++..+.+.+.|+++++++++.-.++..+-.++++++++ +||+|++++||+++++.++|++++-.++.     
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            344455788999999999999999999999999999999999999 89999999999999999999999764311     


Q ss_pred             -------------CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011986          266 -------------PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSD  332 (473)
Q Consensus       266 -------------~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (473)
                                   ....|.++.++++++-++..+..+|+.|+.+ .+.........+.+.++.++.....+........-
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~  176 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF  176 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Confidence                         1247899999999999999999999988754 44343333334444444444433332211111111


Q ss_pred             CCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHH
Q 011986          333 PSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAA  412 (473)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~  412 (473)
                      ...      |+   ...|..++     ...++=++....+|+.+...=+....++.+++.+.++++||.+++....+|++
T Consensus       177 f~G------~~---~~~~~~i~-----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  177 FHG------YS---WWVWIVIF-----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             hhh------cc---hHHHHHHH-----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            111      11   01233333     33333344455789999999999999999999999999999999999999987


Q ss_pred             HH
Q 011986          413 LV  414 (473)
Q Consensus       413 lI  414 (473)
                      ++
T Consensus       243 ~V  244 (244)
T PF04142_consen  243 LV  244 (244)
T ss_pred             cC
Confidence            64

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.37  E-value=2.4e-13  Score=125.09  Aligned_cols=269  Identities=17%  Similarity=0.190  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhc-cC-ChHHHHHHHHHHHHHHHHHHHHhhcCccc-chhHHHHHHHHHHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEA-IT-DPSAFTVVRFALSAIPFIPFVLRARDDVH-TRNAGFELGLWVSLGYLMQAL  210 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~-~~-~p~~~~~~R~~~a~l~~~~~~~~~~~~~~-~~~~~ll~g~~~~~~~~l~~~  210 (473)
                      .|+.+.-.-.++-.........+.+ ++ .|..-.|..+..-+++..+++.+|++..+ .|+..+++++.-.-++++...
T Consensus        18 i~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~   97 (336)
T KOG2766|consen   18 IGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVK   97 (336)
T ss_pred             heeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEee
Confidence            3444444444444444444444433 23 48888999999888888888888875443 345567777777777888899


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC---------CCCCCHHHHHHHHHHHH
Q 011986          211 GLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS---------GSPPSVGDLLNFLSAVF  280 (473)
Q Consensus       211 al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~---------~~~~~~G~~laL~aal~  280 (473)
                      |.||++...+.++-.-....+.+++| ++|.|..+.++.|++++++||+++...         ++++..|+.+.+++|-+
T Consensus        98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATl  177 (336)
T KOG2766|consen   98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATL  177 (336)
T ss_pred             ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEeccee
Confidence            99999999999998877778888899 899999999999999999999998753         34667999999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHH-HH
Q 011986          281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTG-IF  359 (473)
Q Consensus       281 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg-~~  359 (473)
                      ||..++.-+.+.|+.+   .....+...++++++..+-.+.... +.    ....|.            |....+++ .+
T Consensus       178 YaVSNv~EEflvkn~d---~~elm~~lgLfGaIIsaIQ~i~~~~-~~----~tl~w~------------~~i~~yl~f~L  237 (336)
T KOG2766|consen  178 YAVSNVSEEFLVKNAD---RVELMGFLGLFGAIISAIQFIFERH-HV----STLHWD------------SAIFLYLRFAL  237 (336)
T ss_pred             eeeccccHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhhhcc-ce----eeEeeh------------HHHHHHHHHHH
Confidence            9999999999988766   5556677778888887776333221 11    111121            22233333 33


Q ss_pred             HHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          360 STGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       360 ~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      ...+-|.+.-.-+|..+++..++-..++-.+++++  ..||-...|...+..+.+..|.+++..+
T Consensus       238 ~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r  300 (336)
T KOG2766|consen  238 TMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR  300 (336)
T ss_pred             HHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence            34344555556788889999999899999999988  5678779999999999999998887543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.31  E-value=1.5e-11  Score=104.66  Aligned_cols=125  Identities=20%  Similarity=0.357  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986          279 VFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI  358 (473)
Q Consensus       279 l~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~  358 (473)
                      ++||.+.+..|+..++   .++.....++...+++ ..+........+ ....              +...+...++.++
T Consensus         1 ~~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~   61 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP-FKNL--------------SPRQWLWLLFLGL   61 (126)
T ss_pred             ceeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC--------------ChhhhhhhhHhhc
Confidence            4688999999988876   4588899999888887 555555544322 1111              1123667888899


Q ss_pred             HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986          359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ  422 (473)
Q Consensus       359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~  422 (473)
                      +++++++.++++++++.+++.++.+.+++|+++.++++++++|++++.+++|++++++|+++..
T Consensus        62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9888999999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.29  E-value=2e-11  Score=103.93  Aligned_cols=117  Identities=22%  Similarity=0.298  Sum_probs=97.6

Q ss_pred             HHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC------cccchhHHHHHHHH-HHHHHHHHHHHhhccc
Q 011986          144 VVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD------DVHTRNAGFELGLW-VSLGYLMQALGLETSD  216 (473)
Q Consensus       144 ~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~------~~~~~~~~ll~g~~-~~~~~~l~~~al~~~~  216 (473)
                      ++||...++.|...++++|.+++++|+..+.+ ++++....++      +.+.+...+..+.+ ..+++.++++++++.+
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            47999999999999999999999999999997 4444433322      12223344555666 5888999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheee
Q 011986          217 AGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLE  261 (473)
Q Consensus       217 ~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~  261 (473)
                      ++.++++.++.|+++.++++ ++||++++.+++|+++++.|++++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 8899999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.26  E-value=5.2e-11  Score=108.50  Aligned_cols=254  Identities=15%  Similarity=0.129  Sum_probs=183.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCccc--c-hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-H
Q 011986          162 PSAFTVVRFALSAIPFIPFVLRARDDVH--T-RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-M  237 (473)
Q Consensus       162 p~~~~~~R~~~a~l~~~~~~~~~~~~~~--~-~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~  237 (473)
                      ...++|+....-.++.=+++..+++...  . -+.....++....++..-+.|++++|--...+-...-|+=+++++. +
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~  132 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF  132 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence            4556666666666665444433332211  1 2223445555677778889999999999999999999999999999 7


Q ss_pred             hcCcCchHHHHHHHHHHHHhheeecC--------CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHH
Q 011986          238 LGAIVPARTWFGAVMSILGVALLESS--------GSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVC  309 (473)
Q Consensus       238 l~er~s~~~~~g~~lal~GV~li~~~--------~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l  309 (473)
                      .++..+|++...++.+++||++....        +..+..|.++.+++-..-++...+..++.....+. ...++.+..+
T Consensus       133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~-g~~MM~~~Nl  211 (337)
T KOG1580|consen  133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRT-GTSMMFYTNL  211 (337)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccC-chhhHHHHHH
Confidence            89999999999999999999997753        34578999999998888888888887776543322 3345556666


Q ss_pred             HHHHHHHHHHHHhccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHH
Q 011986          310 VIALLSAVWYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEP  388 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~p  388 (473)
                      -+++.+...+++.+.... ..+..-..            ..|.-+..+|+.+. ++|++.++-+...+|...+++..+.-
T Consensus       212 wStL~Lg~g~lfTGElweF~yF~~RhP------------~~~~~l~l~ai~s~-LGQ~fIF~tv~~FgPLtCSivTTTRK  278 (337)
T KOG1580|consen  212 WSTLYLGAGLLFTGELWEFFYFVQRHP------------YVFWDLTLLAIASC-LGQWFIFKTVEEFGPLTCSIVTTTRK  278 (337)
T ss_pred             HHHHHhhhhheehhhHHHHHHHHHhcc------------HHHHHHHHHHHHHH-hhhHHHHHHHHHhCCeeEEEEeehHH
Confidence            666665555444432111 10000000            01333555666555 88999889999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986          389 VWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP  429 (473)
Q Consensus       389 v~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~  429 (473)
                      .|+++.++++|+.+++.+||+|.+++..|...=...+++.+
T Consensus       279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~  319 (337)
T KOG1580|consen  279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAP  319 (337)
T ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCc
Confidence            99999999999999999999999999999877666555443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.19  E-value=3.5e-09  Score=100.59  Aligned_cols=253  Identities=12%  Similarity=0.099  Sum_probs=194.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhcC---cccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-
Q 011986          161 DPSAFTVVRFALSAIPFIPFVLRARD---DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-  236 (473)
Q Consensus       161 ~p~~~~~~R~~~a~l~~~~~~~~~~~---~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-  236 (473)
                      ++..+.+..-+.+.++-..++.+++.   ....++.....++...++-.+.|.|++|++--...+-...--+-+++++. 
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L  129 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL  129 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence            47777888888887777666654432   23456667788888999999999999999988888887777777778888 


Q ss_pred             HhcCcCchHHHHHHHHHHHHhheeecC---C-------CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHH
Q 011986          237 MLGAIVPARTWFGAVMSILGVALLESS---G-------SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGY  306 (473)
Q Consensus       237 ~l~er~s~~~~~g~~lal~GV~li~~~---~-------~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~  306 (473)
                      +.|.|++..+.+...+.-+||.+....   +       .+..+|+.+....-++=++-+....++-+ ..+++...++.+
T Consensus       130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~-~~k~s~~~mM~~  208 (327)
T KOG1581|consen  130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK-KYKVSSLHMMFG  208 (327)
T ss_pred             HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc-cCCccHhHHHHH
Confidence            789999999999999999999876532   1       12357888888888888888888888766 456788888888


Q ss_pred             HHHHHHHHHHHHHHHhccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhh
Q 011986          307 EVCVIALLSAVWYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYG  385 (473)
Q Consensus       307 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~  385 (473)
                      ..+..++......+..+.... ..+...+            ...+.=++....++. ++|.+-++-+++-++...+.++.
T Consensus       209 vNLf~~i~~~~~li~qg~~~~av~F~~~h------------p~~~~Di~l~s~~ga-vGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  209 VNLFSAILNGTYLILQGHLLPAVSFIKEH------------PDVAFDILLYSTCGA-VGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             HHHHHHHHHHHhhhcCCCCchHHHHHHcC------------hhHHHHHHHHHHhhh-hhhheehhhHhhcccHHHHHHHH
Confidence            888888887777444332211 1111111            012334566666666 88888888999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          386 LEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       386 l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      +.=+++++++.+.+|++++..||+|..++..|+.+-.+.+++
T Consensus       276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999887776655

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.12  E-value=7.4e-10  Score=93.32  Aligned_cols=98  Identities=18%  Similarity=0.229  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCc--------ccchhHHHHHHHHHH-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-
Q 011986          167 VVRFALSAIPFIPFVLRARDD--------VHTRNAGFELGLWVS-LGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-  236 (473)
Q Consensus       167 ~~R~~~a~l~~~~~~~~~~~~--------~~~~~~~ll~g~~~~-~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-  236 (473)
                      .+|+.++.+++..+...+++.        .+.+.+.+..|+++. .++.++++|+++.+ +.++++.+++|+++.++++ 
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            579999999888877765432        122344455577765 88999999999999 5999999999999999999 


Q ss_pred             HhcCcCchHHHHHHHHHHHHhheeecCCC
Q 011986          237 MLGAIVPARTWFGAVMSILGVALLESSGS  265 (473)
Q Consensus       237 ~l~er~s~~~~~g~~lal~GV~li~~~~~  265 (473)
                      ++|||++++++++++++++|++++..++.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            89999999999999999999999987653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.05  E-value=6.5e-09  Score=100.53  Aligned_cols=127  Identities=23%  Similarity=0.304  Sum_probs=104.2

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccCChH--HHHHHHHHHHHHHHHHHHHhhcCccc----chhHHHHHHHH-HHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAITDPS--AFTVVRFALSAIPFIPFVLRARDDVH----TRNAGFELGLW-VSLG  204 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~--~~~~~R~~~a~l~~~~~~~~~~~~~~----~~~~~ll~g~~-~~~~  204 (473)
                      ...|.+++++++++|+...+..|...++.++.  .+..+++.++.+++.++.+..++...    .+...+..+++ ..++
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999987777754  45557789998888888766543222    12223445555 4678


Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhh
Q 011986          205 YLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVA  258 (473)
Q Consensus       205 ~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~  258 (473)
                      +.++++++++.+++.++++.++.|+++.++++ ++||+++..+++|+++.+.|+.
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999 8999999999999999999974

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.03  E-value=5.1e-09  Score=92.85  Aligned_cols=147  Identities=14%  Similarity=0.104  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcC----CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986          270 GDLLNFLSAVFFGIHMLRTEHISRST----NKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM  345 (473)
Q Consensus       270 G~~laL~aal~~a~~~i~~k~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (473)
                      |.++++++.++.+++.++.|++.++.    ...++..+..+....+.+++.+.....+.............     -+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~-----~~~~   75 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFG-----EELS   75 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-----hhhc
Confidence            67899999999999999999988874    67889999999999999999998887765442221110000     0000


Q ss_pred             -chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986          346 -VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ  422 (473)
Q Consensus       346 -~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~  422 (473)
                       ....+..++..|+++. +-....+..+++.+|...++...+..++..+++++++||++++.+++|+++.++|.++++
T Consensus        76 ~~~~~~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   76 SDPNFIFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence             1123555566666666 555556669999999999999999999999999999999999999999999999998765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.03  E-value=1.4e-08  Score=92.16  Aligned_cols=266  Identities=11%  Similarity=0.070  Sum_probs=188.9

Q ss_pred             HHHHHHhhcc--CC-hHHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011986          150 IPVIKEVEAI--TD-PSAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFIS  224 (473)
Q Consensus       150 ~~~~k~~~~~--~~-p~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~  224 (473)
                      -+..|++++.  +. -+.+++++.+...+.++.+-+.+  +.+....+.++...++.....+.--.+++|.++..-++..
T Consensus        22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFK  101 (309)
T COG5070          22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFK  101 (309)
T ss_pred             HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence            3445666542  22 44555566555444444333222  1223334455666777777767777899999999999999


Q ss_pred             HHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 011986          225 MFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS--------PPSVGDLLNFLSAVFFGIHMLRTEHISRST  295 (473)
Q Consensus       225 ~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~--------~~~~G~~laL~aal~~a~~~i~~k~~~~~~  295 (473)
                      ++..+.++.... ++|.|++..+....++.++.-+...++|.        ..+.|+++.....+.-+.|.+..|+-.+-.
T Consensus       102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt  181 (309)
T COG5070         102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT  181 (309)
T ss_pred             cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc
Confidence            999999999998 89999999999999888888777777664        578899999999999999998888654433


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011986          296 NKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDV  375 (473)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~  375 (473)
                      +.-+ .-.++|..+++..+++.+.++.+++.......           .+......++...|+.+.+..| +-.+.++..
T Consensus       182 Nf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~an-----------nl~~d~l~am~ISgl~svgiSy-~saWcvrVt  248 (309)
T COG5070         182 NFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLAN-----------NLSVDSLMAMFISGLCSVGISY-CSAWCVRVT  248 (309)
T ss_pred             ccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhc-----------CCChHHHHHHHHHHHHHhhhhh-ccceeEeeh
Confidence            3223 33566777777777777776666543221111           1122234455666666665544 455789999


Q ss_pred             ChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986          376 SATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS  428 (473)
Q Consensus       376 ~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~  428 (473)
                      +.+..+++..++-.-..+-|.++|+|+.+...+....+=.++.+++...+.++
T Consensus       249 SSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k  301 (309)
T COG5070         249 SSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK  301 (309)
T ss_pred             hhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888777777777665443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.01  E-value=8.6e-08  Score=91.70  Aligned_cols=235  Identities=14%  Similarity=0.114  Sum_probs=162.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhcCcc----cchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHH
Q 011986          161 DPSAFTVVRFALSAIPFIPFVLRARDDV----HTRNAGFELGLWVSLGYLMQALGLETSDAGRASFIS-MFTVIVVPLLD  235 (473)
Q Consensus       161 ~p~~~~~~R~~~a~l~~~~~~~~~~~~~----~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~-~l~Pl~~~ll~  235 (473)
                      +|.+-.+.-..-+.++.+......+...    ..+...++.|++..+++...+.|+++..++.+..+. .+.-+.+.+++
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g   90 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG   90 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence            3555444444444444444444454433    345566778999999999999999999999999996 56666788888


Q ss_pred             H-HhcCcCchHHH----HHHHHHHHHhheeecCCC---------CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCch
Q 011986          236 G-MLGAIVPARTW----FGAVMSILGVALLESSGS---------PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFL  301 (473)
Q Consensus       236 ~-~l~er~s~~~~----~g~~lal~GV~li~~~~~---------~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~  301 (473)
                      . +|+|.-+..++    +|+++.++|+++-...+.         ....|....+++.+.|..|.++.|..     .+++.
T Consensus        91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-----~~~~~  165 (269)
T PF06800_consen   91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF-----HVSGW  165 (269)
T ss_pred             HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCChh
Confidence            8 89998876543    478888899998775421         23468999999999999999986643     23444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHH
Q 011986          302 PLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETA  381 (473)
Q Consensus       302 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s  381 (473)
                      ....-+.+...+....+.....   ... .....              |  .-.++++...++..++..+.++.+.+..=
T Consensus       166 ~~~lPqaiGm~i~a~i~~~~~~---~~~-~~k~~--------------~--~nil~G~~w~ignl~~~is~~~~G~a~af  225 (269)
T PF06800_consen  166 SAFLPQAIGMLIGAFIFNLFSK---KPF-FEKKS--------------W--KNILTGLIWGIGNLFYLISAQKNGVATAF  225 (269)
T ss_pred             HhHHHHHHHHHHHHHHHhhccc---ccc-cccch--------------H--HhhHHHHHHHHHHHHHHHhHHhccchhhh
Confidence            4444443333333333322221   000 01111              1  22344455558888888999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhcCcccHhh----HHHHHHHHHHHHH
Q 011986          382 IIYGLEPVWGAGFAWFILGERWGATG----WLGAALVLVGSLT  420 (473)
Q Consensus       382 ~l~~l~pv~a~l~~~il~gE~~~~~~----~~G~~lIl~g~~l  420 (473)
                      .+.-+.++++.+.+.+++||.=+..+    ++|.++|++|.++
T Consensus       226 ~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  226 TLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999887654    4688888888654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.98  E-value=1.7e-08  Score=99.04  Aligned_cols=134  Identities=15%  Similarity=0.089  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986          271 DLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPW  350 (473)
Q Consensus       271 ~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (473)
                      .++.++++++++...+..|+..++.+   +  ...+.....+++..|+...........  ...             ..+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~---~--~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~-------------~~~   62 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP---D--FLWWALLAHSVLLTPYGLWYLAQVGWS--RLP-------------ATF   62 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh---H--HHHHHHHHHHHHHHHHHHHhcccCCCC--Ccc-------------hhh
Confidence            47889999999999999997776533   2  234444555566666554421111111  000             013


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      ...+..+++.....+.++++++++.+++.++++.+++|+++.+++++++||+++..+|+|++++++|+++....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            34555666677788999999999999999999999999999999999999999999999999999999887643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=2e-10  Score=107.06  Aligned_cols=264  Identities=16%  Similarity=0.127  Sum_probs=198.2

Q ss_pred             HHHHhhcc----C-ChHHHHHHHHHHHHHHHHHHHHhhcC------------cccchhHHHHHHHHHHHHHHHHHHHhhc
Q 011986          152 VIKEVEAI----T-DPSAFTVVRFALSAIPFIPFVLRARD------------DVHTRNAGFELGLWVSLGYLMQALGLET  214 (473)
Q Consensus       152 ~~k~~~~~----~-~p~~~~~~R~~~a~l~~~~~~~~~~~------------~~~~~~~~ll~g~~~~~~~~l~~~al~~  214 (473)
                      ..|++++.    + .|..+++...++...++..+-...++            +.+.-+..+.+.+....+..+-+++++|
T Consensus        46 ~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~y  125 (347)
T KOG1442|consen   46 LNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKY  125 (347)
T ss_pred             hHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhh
Confidence            44666543    2 48899999999888887776543321            1112233344555556666778899999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC----CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 011986          215 SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS----GSPPSVGDLLNFLSAVFFGIHMLRTE  289 (473)
Q Consensus       215 ~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~----~~~~~~G~~laL~aal~~a~~~i~~k  289 (473)
                      ++++.-.+-..+.-+|++++.+ ++|+|-+..-..++++.++|-.+=.-.    +.....|.++++.+.++-|+..+..|
T Consensus       126 VgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytk  205 (347)
T KOG1442|consen  126 VGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTK  205 (347)
T ss_pred             cceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999 899999999888888888887664332    22346899999999999999999999


Q ss_pred             hhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 011986          290 HISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEM  369 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~  369 (473)
                      |......+ -...+.+|..+...++.+|.+++.+..+.....+ ..+.         ...|+.+..-|++++.++|.-. 
T Consensus       206 k~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~-~l~a---------~~Fw~~mtLsglfgF~mgyvTg-  273 (347)
T KOG1442|consen  206 KVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP-HLPA---------IKFWILMTLSGLFGFAMGYVTG-  273 (347)
T ss_pred             eecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc-cchH---------HHHHHHHHHHHHHHHHhhheee-
Confidence            66544332 2455778888888888899888877654432211 1111         2248888888888887776533 


Q ss_pred             HHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          370 AAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       370 ~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      +=+|-.+|.+..+-....-....+++..+++|.-+..-|-|-++|++|...+.+.|+.
T Consensus       274 ~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~  331 (347)
T KOG1442|consen  274 WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEH  331 (347)
T ss_pred             EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHH
Confidence            3578889988888888888899999999999999999999999999999999886544

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.94  E-value=1.9e-08  Score=89.56  Aligned_cols=214  Identities=13%  Similarity=0.050  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCC---CCHHHH
Q 011986          197 LGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSP---PSVGDL  272 (473)
Q Consensus       197 ~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~---~~~G~~  272 (473)
                      ..++....+++|..+++..++++++.+....-.|+.++++ .+|+|+...++++.++++.|++++...|+.   ...|+.
T Consensus        59 F~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~  138 (290)
T KOG4314|consen   59 FSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIA  138 (290)
T ss_pred             eEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHH
Confidence            3455677789999999999999999999999999999999 899999999999999999999999976543   468999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCc-hhHHHHHHHHHHHHHHHHHH-HhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986          273 LNFLSAVFFGIHMLRTEHISRSTNKKDF-LPLLGYEVCVIALLSAVWYF-IGGSLGGTQGSDPSSWTWTMFWDWMVAFPW  350 (473)
Q Consensus       273 laL~aal~~a~~~i~~k~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (473)
                      +++.++...|+|-++-|+.....+--+. ..+....++=......|..+ .+...              ..|+.+....|
T Consensus       139 ~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V--------------E~~qsFA~~PW  204 (290)
T KOG4314|consen  139 CAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV--------------EHLQSFAAAPW  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch--------------HHHHHHhhCCc
Confidence            9999999999999999987654331111 11111111111112222211 11111              11222333357


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      ..+...+++...+. .+.+.++....|...++.+......-..++.++-+-..+.....|..+|+.|.+++....
T Consensus       205 G~l~G~A~L~lAFN-~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  205 GCLCGAAGLSLAFN-FLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             hhhhhHHHHHHHHh-hheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            77777777776443 445568888899999999888888888999876666788999999999999988887643

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.89  E-value=2.1e-06  Score=85.39  Aligned_cols=281  Identities=15%  Similarity=0.028  Sum_probs=171.5

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHH-HHHHHHH---HHHHh-------hcCcccchhHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFA-LSAIPFI---PFVLR-------ARDDVHTRNAGFELGLW  200 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~-~a~l~~~---~~~~~-------~~~~~~~~~~~ll~g~~  200 (473)
                      ...|++..+++.++||+.++..|.. .. -.+|..+.-.. ++.+++.   ..+..       +..+...+...++.|++
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~   82 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL   82 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence            4569999999999999999999984 32 34443332111 1111111   11111       12344556677788999


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHH-HhcCcC---c----hHHHHHHHHHHHHhheeec----CC---
Q 011986          201 VSLGYLMQALGLETSDAGRASFIS-MFTVIVVPLLDG-MLGAIV---P----ARTWFGAVMSILGVALLES----SG---  264 (473)
Q Consensus       201 ~~~~~~l~~~al~~~~~~~asvi~-~l~Pl~~~ll~~-~l~er~---s----~~~~~g~~lal~GV~li~~----~~---  264 (473)
                      ..+++..++.++++..++.+..|. .+.-++..++.. +++|--   +    ..-.+|+++.++|+++...    .+   
T Consensus        83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~  162 (345)
T PRK13499         83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKM  162 (345)
T ss_pred             HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence            999999999999999999998885 788888888888 566533   2    3467899999999999765    11   


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHH-------HHhhhhhcCCCCCchhHHHHHH---HHHHHHHHHHHHHh--ccC
Q 011986          265 -------SPPSVGDLLNFLSAVFFGIHML-------RTEHISRSTNKKDFLPLLGYEV---CVIALLSAVWYFIG--GSL  325 (473)
Q Consensus       265 -------~~~~~G~~laL~aal~~a~~~i-------~~k~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~--~~~  325 (473)
                             ..+..|.++++++.+.++.|+.       ..+... . .+.++.....-+.   +++.++.-..+-..  ...
T Consensus       163 ~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~  240 (345)
T PRK13499        163 GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-A-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKN  240 (345)
T ss_pred             ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-h-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                   2346899999999999999993       322211 1 1233332222222   23333322211111  010


Q ss_pred             CCCC-CCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHH----HHhhhHHHHHHHHHHHHhc
Q 011986          326 GGTQ-GSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETA----IIYGLEPVWGAGFAWFILG  400 (473)
Q Consensus       326 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s----~l~~l~pv~a~l~~~il~g  400 (473)
                      .... ..+..... ...+     . -.++-.++++.-.+++.++..+.++.+.....    +.+.+..+++.+.|+ ++|
T Consensus       241 ~~~~~~~~~~~~~-~~~~-----~-n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk  312 (345)
T PRK13499        241 KDLSLKADFSLAK-PLLI-----T-NVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK  312 (345)
T ss_pred             CCcccchhccccc-hhHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence            1100 00100000 0000     0 12233445555567888888888877544333    444788899999998 499


Q ss_pred             Cccc------HhhHHHHHHHHHHHHHHhhc
Q 011986          401 ERWG------ATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       401 E~~~------~~~~~G~~lIl~g~~l~~~~  424 (473)
                      |.=+      ..-++|.+++++|.+++.+.
T Consensus       313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        313 EWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            9766      66689999999999888764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.89  E-value=2.9e-08  Score=98.19  Aligned_cols=141  Identities=18%  Similarity=0.116  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986          266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM  345 (473)
Q Consensus       266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (473)
                      ....|.++++++++.|+...+..|.. .   ++++....+++.+++.++..+............. ....  +       
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~--~-------   70 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQT--P-------   70 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcC--H-------
Confidence            44579999999999999999999754 3   3668899999999988777666544321100000 0000  0       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                        ..+ .....+++..++.+.++++++++.+++.++++.++.|++..++++++++|+++..+++|+++.++|++++..
T Consensus        71 --~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         71 --QKI-FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             --HHH-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence              112 234467777778899999999999999999999999999999999999999999999999999999988754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.86  E-value=1.1e-07  Score=81.71  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986          269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF  348 (473)
Q Consensus       269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (473)
                      .|+++.+++.++-+...++.|+-.++..+.+..   ..  .   . ..... ...                         
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~~--~---~-~~~~~-~~~-------------------------   46 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---WD--F---I-AALLA-FGL-------------------------   46 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---hH--H---H-HHHHH-Hhc-------------------------
Confidence            467889999999999999999777665433311   10  0   0 00000 000                         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHH--HhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWF--ILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~i--l~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                       -...+++|++..++++.+|++++++.+++.+..+..+.+++..+.++.  +|||++++.+++|+++|++|++++...
T Consensus        47 -p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         47 -ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence             122578899999999999999999999999999999998888888875  799999999999999999999998754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.85  E-value=3.3e-08  Score=97.37  Aligned_cols=260  Identities=14%  Similarity=0.149  Sum_probs=150.6

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHH-HHHHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGL-WVSLGYLMQAL  210 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~-~~~~~~~l~~~  210 (473)
                      ...|+++++.++++.+....+.|......+.-   -.|-.            .+.....++..+..|+ ++.++..+.+.
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~---~~~~~------------~~~~~~l~~~~W~~G~~~~~~g~~~~~~   69 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG---SLRAG------------SGGRSYLRRPLWWIGLLLMVLGEILNFV   69 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccc------------chhhHHHhhHHHHHHHHHHhcchHHHHH
Confidence            45799999999999999999998864321110   00000            0000001122233333 35677788899


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC--CCC--CC----------HHH--HH
Q 011986          211 GLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS--GSP--PS----------VGD--LL  273 (473)
Q Consensus       211 al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~--~~~--~~----------~G~--~l  273 (473)
                      |+.+.|++..+.+..+.-++.++++. ++|||+++.++.|++++++|+.++...  ...  ..          .+.  .+
T Consensus        70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~  149 (300)
T PF05653_consen   70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYF  149 (300)
T ss_pred             HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhH
Confidence            99999999999999999999999999 899999999999999999999876532  111  11          111  11


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHH----HHHHhccCCC-CCCCCCCCcchhhhhcccchh
Q 011986          274 NFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAV----WYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAF  348 (473)
Q Consensus       274 aL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  348 (473)
                      .+...+...+.....+|.+++    +.+.+.....++++.-.+.    ...+.....+ .....+              .
T Consensus       150 ~~~~~~~~~L~~~~~~r~g~~----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~--------------~  211 (300)
T PF05653_consen  150 ILVLVLILILIFFIKPRYGRR----NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYP--------------L  211 (300)
T ss_pred             HHHHHHHHHHHHhhcchhccc----ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhh--------------H
Confidence            122222222333333333222    1221111111111111110    0111111110 111111              1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhH-HHHHHHHHHHHhcCcc--cH----hhHHHHHHHHHHHHHH
Q 011986          349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLE-PVWGAGFAWFILGERW--GA----TGWLGAALVLVGSLTV  421 (473)
Q Consensus       349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~-pv~a~l~~~il~gE~~--~~----~~~~G~~lIl~g~~l~  421 (473)
                      .|..++.+ +.....+....|+|+++.+++.+.++.|.- ...+++-+.++|+|.-  ++    ....|+.+++.|+++.
T Consensus       212 ~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL  290 (300)
T PF05653_consen  212 TYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL  290 (300)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence            24443333 444557788889999999999888887774 4466677788888753  34    3457888899998887


Q ss_pred             hhcC
Q 011986          422 QIFG  425 (473)
Q Consensus       422 ~~~~  425 (473)
                      ...+
T Consensus       291 ~~~~  294 (300)
T PF05653_consen  291 SSSK  294 (300)
T ss_pred             eccC
Confidence            6543

>TIGR00688 rarD rarD protein

Probab=98.83  E-value=9.2e-08  Score=92.51  Aligned_cols=140  Identities=14%  Similarity=0.233  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986          269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF  348 (473)
Q Consensus       269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (473)
                      .|.++.++++++|+...+..|.+ .   ++++....+++.++++++..++............ .         ++.....
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~-~---------~~~~~~~   67 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIE-R---------LKRIQKR   67 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH-H---------HhCcccc
Confidence            47899999999999999999863 2   3678999999999988777665544321100000 0         0000000


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          349 P-WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       349 ~-~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                      . +..+...|++ .++.+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|++++..
T Consensus        68 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        68 PLILSLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            1 2333444444 558899999999999999999999999999999999999999999999999999999887653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.80  E-value=1.3e-07  Score=93.30  Aligned_cols=128  Identities=13%  Similarity=0.156  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc-ccc---hhHHHHHHHH-HHHHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD-VHT---RNAGFELGLW-VSLGYLM  207 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~-~~~---~~~~ll~g~~-~~~~~~l  207 (473)
                      ..|.++.+.++++|+...+..|...++.++..+.+. ..++.+++.++....... ...   +...+..|++ ..+++.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999998777888777554 455556666655544321 111   2123345555 3567889


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheee
Q 011986          208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLE  261 (473)
Q Consensus       208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~  261 (473)
                      +++++++.+++.++++.++.|+++.++++ ++||+++..+++|.++.++|+++..
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 8999999999999999999998764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.76  E-value=2.3e-07  Score=93.89  Aligned_cols=140  Identities=15%  Similarity=0.124  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986          269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF  348 (473)
Q Consensus       269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (473)
                      ..++.+++.-++|+.+.++.|...+.  ++++....++++.+++++++++..........+     ...|.         
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~--G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~-----~~~~~---------   76 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSK--GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLP-----PLSVS---------   76 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cchHH---------
Confidence            45577788889999999999987754  678999999999999999888876543211111     00111         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHH------hcCcccHhhHHHHHHHHHHHHHHh
Q 011986          349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFI------LGERWGATGWLGAALVLVGSLTVQ  422 (473)
Q Consensus       349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il------~gE~~~~~~~~G~~lIl~g~~l~~  422 (473)
                      .|..+..+|+++ .+.+.+++.++++.+++.++++.++.|++++++++++      ++|+++..+++|.++-++|++++.
T Consensus        77 ~~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~  155 (358)
T PLN00411         77 ILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI  155 (358)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            356677777777 3566788899999999999999999999999999999      699999999999999999998877


Q ss_pred             hcC
Q 011986          423 IFG  425 (473)
Q Consensus       423 ~~~  425 (473)
                      ..+
T Consensus       156 ~~~  158 (358)
T PLN00411        156 FYH  158 (358)
T ss_pred             Hcc
Confidence            543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.74  E-value=1.9e-07  Score=92.38  Aligned_cols=127  Identities=15%  Similarity=0.110  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc-----ccchhHHHHHHHHHHHHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD-----VHTRNAGFELGLWVSLGYLM  207 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~-----~~~~~~~ll~g~~~~~~~~l  207 (473)
                      ..|.++++.++++|+...++.|...++.++....+   ..+.+.+.+........     ...+...+..++...+++.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999877778776533   22223333222222211     11222334445556678999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      +++++++.+++.++++.++.|++.+++++ ++||+++..+++|.++.+.|+++...
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999 89999999999999999999987654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.68  E-value=4.8e-07  Score=89.29  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcc------cchhHHHHHHHH-HHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDV------HTRNAGFELGLW-VSLGY  205 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~------~~~~~~ll~g~~-~~~~~  205 (473)
                      ..|.++.++++++|+......|..... ++....++.+.++.+.+.++........      ..+...+..+++ ..+++
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999986433 3456677888888887777665433211      122233444554 45778


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          206 LMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       206 ~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      .++++++++.+++.++++.++.|++++++++ ++||+++..+++|.++.+.|++++..
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 89999999999999999999988754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.60  E-value=3.8e-07  Score=76.70  Aligned_cols=77  Identities=23%  Similarity=0.553  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986          349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS  426 (473)
Q Consensus       349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~  426 (473)
                      .|...+..|+++..+++.++.+++++.+ +.+..+..++|+++.++++++++|+++..+++|.+++++|++++.+.+.
T Consensus        33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            3555677788777799999999999999 4888999999999999999999999999999999999999999987543

>TIGR00803 nst UDP-galactose transporter

Probab=98.59  E-value=1e-06  Score=83.35  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHH
Q 011986          361 TGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT  420 (473)
Q Consensus       361 ~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l  420 (473)
                      ..+++.+..+.+++.++...+....++++++.++++++|||+++..+++|+.+++.|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            446666777899999999999999999999999999999999999999999999998654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.53  E-value=7e-06  Score=77.00  Aligned_cols=259  Identities=10%  Similarity=-0.011  Sum_probs=167.5

Q ss_pred             ccCCh--HHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 011986          158 AITDP--SAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPL  233 (473)
Q Consensus       158 ~~~~p--~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~l  233 (473)
                      +++.|  |.++++++++=..+.++.+...  ++..-.|+....++.+......+-+-++.|++--.-.+...+--+=+.+
T Consensus        69 ~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmi  148 (367)
T KOG1582|consen   69 EGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMI  148 (367)
T ss_pred             ccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhh
Confidence            46665  4566666655444444333211  2222345555566555555556666677777655444554444444445


Q ss_pred             HHH-HhcCcCchHHHHHHHHHHHHhheeecCCC----C-CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHH
Q 011986          234 LDG-MLGAIVPARTWFGAVMSILGVALLESSGS----P-PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYE  307 (473)
Q Consensus       234 l~~-~l~er~s~~~~~g~~lal~GV~li~~~~~----~-~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~  307 (473)
                      .+. +-|.|.++.+.++..+..+|+++....|+    + ...|+.+.-.+-++=|.-.-+.++..+..++. ...+.++.
T Consensus       149 ggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~s-s~EmvfyS  227 (367)
T KOG1582|consen  149 GGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPAS-SSEMVFYS  227 (367)
T ss_pred             eeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCC-cceEEEee
Confidence            555 45899999999999999999999887553    2 34677666666666666667777777765543 35567777


Q ss_pred             HHHHHHHHHHHHHHhccCC-CCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhh
Q 011986          308 VCVIALLSAVWYFIGGSLG-GTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGL  386 (473)
Q Consensus       308 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l  386 (473)
                      ..++.+.++..+...+... .+.+...+.+.           .+...++.+..+. +++..-..-++..+|..++.+...
T Consensus       228 y~iG~vflf~~mvlTge~f~a~~fcaehp~~-----------tyGy~~~~s~~gy-lG~~~VLalI~~fGA~~aatvTTa  295 (367)
T KOG1582|consen  228 YGIGFVFLFAPMVLTGELFSAWTFCAEHPVR-----------TYGYAFLFSLAGY-LGIVFVLALIKLFGALIAATVTTA  295 (367)
T ss_pred             ecccHHHHHHHHHhcccchhhhHHHHhCcHh-----------HHHHHHHHHHHhH-hhHHHHHHHHHHhchhHHHHHHHh
Confidence            7788887777766655421 22221111110           1333344444333 554444446777899999999999


Q ss_pred             HHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986          387 EPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP  429 (473)
Q Consensus       387 ~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~  429 (473)
                      .--+++++++++|..+++....-|..+|+.|+++-.+.++.+.
T Consensus       296 RKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~  338 (367)
T KOG1582|consen  296 RKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKI  338 (367)
T ss_pred             HhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCC
Confidence            9999999999999999999999999999999998877664443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.50  E-value=3.4e-06  Score=83.59  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986          271 DLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPW  350 (473)
Q Consensus       271 ~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (473)
                      .++++++++.|+...+..|....   ++++....+++..++++...++..  .  .      ...              +
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~---~~~p~~~~~~R~~~a~~~l~~~~~--~--~------~~~--------------~   58 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH---NMPPLMLAGLRFMLVAFPAIFFVA--R--P------KVP--------------L   58 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHhc--C--C------CCc--------------h
Confidence            46788999999999999986654   466999999998887765544321  0  0      000              2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-cChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          351 IPALYTGIFSTGLCLWIEMAAMRD-VSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       351 ~~ll~lg~~~~~~~~~l~~~al~~-~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                      ..++..|++.....+.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+++...
T Consensus        59 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         59 NLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            233444555554555666778887 6889999999999999999999999999999999999999999888764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.49  E-value=1.2e-06  Score=86.75  Aligned_cols=130  Identities=12%  Similarity=0.096  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCcc--c----------chhHHH---
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRARDDV--H----------TRNAGF---  195 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~--~----------~~~~~l---  195 (473)
                      ..|.++.++++++|+...+..|...+  ++++.++.++.+.++.++++++........  .          ......   
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            46999999999999999999998877  789999999999999988888866432111  0          000011   


Q ss_pred             -HHHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          196 -ELGL-WVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       196 -l~g~-~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                       ..+. .....+.+++++++++++..++++..+.|++++++++ ++||+++..+++|.+++++|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence             1111 1122235667899999999999999999999999999 89999999999999999999987653

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.44  E-value=3.5e-06  Score=70.48  Aligned_cols=64  Identities=23%  Similarity=0.315  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          199 LWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       199 ~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      +....++.++.+++++.|.+.+..+.++.++++.++++ ++|||+++++++|+.++++|++++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34567789999999999999999999999999999999 89999999999999999999988753

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.40  E-value=2.7e-06  Score=71.16  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          354 LYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       354 l~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                      ..++++..++++.++.+++++.+.+.+-.+.++.++++.++++++|||++++.+++|.++|++|++++..
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3445577778999999999999999999999999999999999999999999999999999999987653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.39  E-value=2.9e-06  Score=83.59  Aligned_cols=126  Identities=18%  Similarity=0.171  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHH----HHHHHHHHHHHhhcC-cccchhHHHHHHHHHHHHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFA----LSAIPFIPFVLRARD-DVHTRNAGFELGLWVSLGYLM  207 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~----~a~l~~~~~~~~~~~-~~~~~~~~ll~g~~~~~~~~l  207 (473)
                      .+|+++.+++.+.++......|..  +.+|+..++....    .+.+++.++ .+.+. ..+.....++.|++..+++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999976  4788888555544    333333333 11111 111222344578888888999


Q ss_pred             HHHHhh-ccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHH----HHHHHHHHHhheee
Q 011986          208 QALGLE-TSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTW----FGAVMSILGVALLE  261 (473)
Q Consensus       208 ~~~al~-~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~----~g~~lal~GV~li~  261 (473)
                      |+.+++ +.+++.++++.+..|+...+.+. ++||+.+++++    +|.++.+.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            999999 99999999999999999999999 89999999999    99999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.33  E-value=2.2e-05  Score=69.37  Aligned_cols=125  Identities=21%  Similarity=0.183  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhh-------ccCChHHHHHHHHHHHHHHHHHHHHhhcCcc-----------------cc
Q 011986          135 SIILLNAITVVYASNIPVIKEVE-------AITDPSAFTVVRFALSAIPFIPFVLRARDDV-----------------HT  190 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~-------~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~-----------------~~  190 (473)
                      |.++++.+.++.+...++.|...       ...++.++.++-...+.+++.+.....++..                 ..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            56788999999999999998874       2678999999999999999888876543211                 11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986          191 RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL  259 (473)
Q Consensus       191 ~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l  259 (473)
                      ....+..|++.++.+...+..++++++...+++..+--+++.++++ +++|+++..+++|++++++|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            2223345666777788999999999999999999999999999999 88999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.32  E-value=1.7e-05  Score=77.37  Aligned_cols=130  Identities=20%  Similarity=0.337  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHH-HHHHHHHHHHHHHHHhhcC---cccchhHHHHHHHHHH-HHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTV-VRFALSAIPFIPFVLRARD---DVHTRNAGFELGLWVS-LGYLM  207 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~-~R~~~a~l~~~~~~~~~~~---~~~~~~~~ll~g~~~~-~~~~l  207 (473)
                      ..|.++.+.++++|+...+..|... ..++....+ +.+........+.......   ....+......|++.. +++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999876 667777766 4443222222222222221   2223444455666665 58999


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986          208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS  263 (473)
Q Consensus       208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~  263 (473)
                      +++++++.+++.++.+.++.|++..++++ +++|+++..+++|+++.+.|+.+....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999 889999999999999999999886543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.31  E-value=1.5e-05  Score=68.43  Aligned_cols=120  Identities=14%  Similarity=-0.032  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLE  213 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~  213 (473)
                      +++++.++..++-+..-++.|...++.+..+.....  ...+..  .       .....+.++.-++...++.++.++++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~~--~-------~~p~~~i~lgl~~~~la~~~w~~aL~   70 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALLA--F-------GLALRAVLLGLAGYALSMLCWLKALR   70 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHHH--H-------hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888999999887666554432211  000000  0       01111223333446788899999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHH---HhcCcCchHHHHHHHHHHHHhheeecCC
Q 011986          214 TSDAGRASFISMFTVIVVPLLDG---MLGAIVPARTWFGAVMSILGVALLESSG  264 (473)
Q Consensus       214 ~~~~~~asvi~~l~Pl~~~ll~~---~l~er~s~~~~~g~~lal~GV~li~~~~  264 (473)
                      +.+++.+..+..+.+.++.++++   ++||++++.+++|+++.++||+++..++
T Consensus        71 ~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         71 YLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999888888887   5899999999999999999999987643

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.31  E-value=1.8e-05  Score=80.17  Aligned_cols=128  Identities=11%  Similarity=0.079  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhcc-------CChHHHHHHHHHHHHHHHHHHHHhhcCc------------ccc--h
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAI-------TDPSAFTVVRFALSAIPFIPFVLRARDD------------VHT--R  191 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~-------~~p~~~~~~R~~~a~l~~~~~~~~~~~~------------~~~--~  191 (473)
                      ..|.++++++.++|+...++.|...++       +++.++..+-..++.++++++.......            ...  .
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            469999999999999999999988653       5677777777788888888776532110            001  1


Q ss_pred             hHHHHHHHHHHHHHHH----HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986          192 NAGFELGLWVSLGYLM----QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL  260 (473)
Q Consensus       192 ~~~ll~g~~~~~~~~l----~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li  260 (473)
                      ...+...+..++.+++    .+++++++++..+++...+-|+++.++++ +++|+++..+++|.+++++|+++.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            1111122223333344    44699999999999999999999999999 899999999999999999999764

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2.8e-06  Score=81.87  Aligned_cols=265  Identities=14%  Similarity=0.114  Sum_probs=162.0

Q ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCccc-chhHHHHHH-HHHHHHHHH
Q 011986          130 SKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVH-TRNAGFELG-LWVSLGYLM  207 (473)
Q Consensus       130 ~~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~-~~~~~ll~g-~~~~~~~~l  207 (473)
                      .+...|.++++.+.++.|.+..+-|..+.....   ...|.             .....+ ...+.+..| +.+.+|-.+
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra-------------~~gg~~yl~~~~Ww~G~ltm~vGei~   80 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRA-------------GEGGYGYLKEPLWWAGMLTMIVGEIA   80 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccc-------------cCCCcchhhhHHHHHHHHHHHHHhHh
Confidence            455679999999999999999999876532211   11110             111111 111222333 347788888


Q ss_pred             HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC--CC------------CCHHHH
Q 011986          208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG--SP------------PSVGDL  272 (473)
Q Consensus       208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~--~~------------~~~G~~  272 (473)
                      .|.|+.+.|++..+.+..+..++.++++. +++|+++....+|++++++|-.++....  ..            ...+.+
T Consensus        81 NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fl  160 (335)
T KOG2922|consen   81 NFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFL  160 (335)
T ss_pred             hHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHH
Confidence            88999999999999999999999999999 9999999999999999999998876421  11            012221


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHH-----HHHHHhccCCCCCCCCCCCcchhhhhcccch
Q 011986          273 LNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSA-----VWYFIGGSLGGTQGSDPSSWTWTMFWDWMVA  347 (473)
Q Consensus       273 laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (473)
                      .-..  +.-....++.-.+..++...+.+.+.....+++++-..     -.++-.......+...+              
T Consensus       161 iy~~--~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~--------------  224 (335)
T KOG2922|consen  161 VYVI--IIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYP--------------  224 (335)
T ss_pred             HHHH--HHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccH--------------
Confidence            1111  11111111222222333333555555544444321111     11111111111111111              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhh-HHHHHHHHHHHHhcCccc------HhhHHHHHHHHHHHHH
Q 011986          348 FPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGL-EPVWGAGFAWFILGERWG------ATGWLGAALVLVGSLT  420 (473)
Q Consensus       348 ~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l-~pv~a~l~~~il~gE~~~------~~~~~G~~lIl~g~~l  420 (473)
                      ..|..++.++.... .+....++|++..+++.+.++.|. -..++++-+.++|+|.-.      .....|+..|+.|+++
T Consensus       225 ~ty~~~l~~~~~~~-~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl  303 (335)
T KOG2922|consen  225 LTWIFLLVVATCVS-TQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL  303 (335)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence            13665555555444 777888999999999999999887 455777788888987543      3456799999999988


Q ss_pred             HhhcCCC
Q 011986          421 VQIFGSS  427 (473)
Q Consensus       421 ~~~~~~~  427 (473)
                      ....|..
T Consensus       304 L~~~kd~  310 (335)
T KOG2922|consen  304 LHRTKDM  310 (335)
T ss_pred             eeeeccc
Confidence            8554433

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.27  E-value=1.7e-07  Score=86.55  Aligned_cols=264  Identities=13%  Similarity=0.095  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC--cccchhHHHHHHHHHHHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD--DVHTRNAGFELGLWVSLGYLMQALG  211 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~--~~~~~~~~ll~g~~~~~~~~l~~~a  211 (473)
                      ..++.+++-++.||+.+.+....  +-.|.+-+..-.+-+.++.+.+++...+  +...+...++.|.+..++....+.|
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka   79 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA   79 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence            35789999999999998776443  2367776665555555555555544322  2333445567788899999999999


Q ss_pred             hhccchhHHHHHHH-HHHHHHHHHHH-HhcCcCchHH----HHHHHHHHHHhheeecCCC---------CCCHHHHHHHH
Q 011986          212 LETSDAGRASFISM-FTVIVVPLLDG-MLGAIVPART----WFGAVMSILGVALLESSGS---------PPSVGDLLNFL  276 (473)
Q Consensus       212 l~~~~~~~asvi~~-l~Pl~~~ll~~-~l~er~s~~~----~~g~~lal~GV~li~~~~~---------~~~~G~~laL~  276 (473)
                      +++..++.+..+.. +.-+-+-+++. .++|.-+..+    .+++++.+.|+.+-...+.         +...|....+.
T Consensus        80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i  159 (288)
T COG4975          80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI  159 (288)
T ss_pred             eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence            99999999999964 55556667777 6899877654    4677888899988776432         23468888888


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHH
Q 011986          277 SAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYT  356 (473)
Q Consensus       277 aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l  356 (473)
                      +.++|-.|.++.+...  .+..+.+--.+..+    ++....+-....   ....+.               ....-+.-
T Consensus       160 St~GYv~yvvl~~~f~--v~g~saiLPqAiGM----v~~ali~~~~~~---~~~~~K---------------~t~~nii~  215 (288)
T COG4975         160 STLGYVGYVVLFQLFD--VDGLSAILPQAIGM----VIGALILGFFKM---EKRFNK---------------YTWLNIIP  215 (288)
T ss_pred             eccceeeeEeeecccc--ccchhhhhHHHHHH----HHHHHHHhhccc---ccchHH---------------HHHHHHhh
Confidence            9999999999877654  23333332222222    222222222211   010010               11122333


Q ss_pred             HHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhH----HHHHHHHHHHHHHhhc
Q 011986          357 GIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGW----LGAALVLVGSLTVQIF  424 (473)
Q Consensus       357 g~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~----~G~~lIl~g~~l~~~~  424 (473)
                      |++ -+++...+..+.++.+.++.=.+.-+..+.+.+-|.++++|+=+..++    +|.+++++|..+....
T Consensus       216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~  286 (288)
T COG4975         216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIA  286 (288)
T ss_pred             HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhee
Confidence            433 347777777888888887777778888899999999999999887765    6888999888776554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.22  E-value=1.9e-05  Score=75.36  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=112.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccc
Q 011986          267 PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMV  346 (473)
Q Consensus       267 ~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (473)
                      ...|+++++.+-+.|+.-....|-+ +   +++...+..++.+-+.++.................            .-+
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~------------~~~   68 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQL------------LKQ   68 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------------HhC
Confidence            3578999999999999999888755 3   34467788898888887777776665443222110            112


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986          347 AFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS  426 (473)
Q Consensus       347 ~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~  426 (473)
                      .+.+..++..+++.+ ....+|.+|........++...|++|++.++.|.++++|+++..||+..++..+|+....+...
T Consensus        69 p~~~~~~~l~a~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          69 PKTLLMLALTALLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            234555566666555 8999999999999999999999999999999999999999999999999999999988766554


Q ss_pred             C
Q 011986          427 S  427 (473)
Q Consensus       427 ~  427 (473)
                      .
T Consensus       148 ~  148 (293)
T COG2962         148 S  148 (293)
T ss_pred             C
Confidence            4

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00011  Score=68.69  Aligned_cols=127  Identities=13%  Similarity=0.142  Sum_probs=104.4

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhH----HHHHHHHH-HHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNA----GFELGLWV-SLGYL  206 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~----~ll~g~~~-~~~~~  206 (473)
                      ...|..+++.+..+|+...+.-|.+.+..+.-+-+.+-+.++.++.+++-......--....    .+..+++. .+-|.
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs  225 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS  225 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence            35799999999999999999999887677888888999999999999987655443322222    23334443 34578


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhh
Q 011986          207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVA  258 (473)
Q Consensus       207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~  258 (473)
                      +-..++.+.|...-+++..+.|.+.++.++ +++|+++..||+++...+++.+
T Consensus       226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999 8999999999999998887765

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.03  E-value=1.5e-05  Score=75.07  Aligned_cols=245  Identities=14%  Similarity=0.125  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHH-Hh
Q 011986          163 SAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGLETS-DAGRASFISMFTVIVVPLLDG-ML  238 (473)
Q Consensus       163 ~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~-~~~~asvi~~l~Pl~~~ll~~-~l  238 (473)
                      ..++|.++++-..--+++.-..  .+++-.++.....-.+.+..+.+.++++++- +...=.++..-.++.++++++ ++
T Consensus        34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~  113 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILL  113 (330)
T ss_pred             eehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhc
Confidence            4566666666555444443111  1122234444555455666677788888773 443334455778889999999 78


Q ss_pred             cCcCchHHHHHHHHHHHHhheeecC---CC---------C--------CCHHHHHHHHHHHHHHHHH----HHHhhhhhc
Q 011986          239 GAIVPARTWFGAVMSILGVALLESS---GS---------P--------PSVGDLLNFLSAVFFGIHM----LRTEHISRS  294 (473)
Q Consensus       239 ~er~s~~~~~g~~lal~GV~li~~~---~~---------~--------~~~G~~laL~aal~~a~~~----i~~k~~~~~  294 (473)
                      |+|.+.+|..++++..+|+++....   +.         +        +..|+.+...+-+.-|.-.    ...||.+|.
T Consensus       114 ~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh  193 (330)
T KOG1583|consen  114 GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH  193 (330)
T ss_pred             cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999987632   10         0        1234443333333222222    333444432


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011986          295 TNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQ----GSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMA  370 (473)
Q Consensus       295 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~  370 (473)
                           +-...+|.    -.+.+|..++.+..--..    ..........  ..-.-+..|..++.     ..+.|.+-.+
T Consensus       194 -----~~EalFyt----H~LsLP~Flf~~~div~~~~~~~~se~~~~p~--~g~~vP~~~~yLl~-----n~L~Qy~Cik  257 (330)
T KOG1583|consen  194 -----WKEALFYT----HFLSLPLFLFMGDDIVSHWRLAFKSESYLIPL--LGFKVPSMWVYLLF-----NVLTQYFCIK  257 (330)
T ss_pred             -----hHHHHHHH----HHhccchHHHhcchHHHHHHHHhcCcceeccc--cCccccHHHHHHHH-----HHHHHHHHHH
Confidence                 33333332    233344443332210000    0000000000  00001112333333     2233333333


Q ss_pred             H----hcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          371 A----MRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       371 a----l~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                      +    -.+.++.++++...+.-.++++++++.|+.+++++.|+|++++..|.++..-
T Consensus       258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~  314 (330)
T KOG1583|consen  258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN  314 (330)
T ss_pred             hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3    3445677888889999999999999999999999999999999999988664

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.96  E-value=7.9e-05  Score=62.88  Aligned_cols=70  Identities=10%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccChhHHH-HHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          356 TGIFSTGLCLWIEMAAMRDVSATETA-IIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       356 lg~~~~~~~~~l~~~al~~~~a~~~s-~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      +.++..+++++++.+++++++.+.+= +...+..+.+.+.++++|||++++.+++|.++|++|++......
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            45566678999999999999977654 44578999999999999999999999999999999998886544

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.82  E-value=0.00065  Score=67.79  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986          350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS  426 (473)
Q Consensus       350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~  426 (473)
                      |...+.+|++-. .+.++.+.|+++.+.+.+.++.....+++++++++++++++++.+++|+++.++|+.++.....
T Consensus        79 ~w~y~lla~~Dv-~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   79 WWKYFLLALLDV-EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            444566677776 8888899999999999999999999999999999999999999999999999999988877653

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.75  E-value=0.00028  Score=58.78  Aligned_cols=70  Identities=19%  Similarity=0.354  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHhcccChhHH-HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          356 TGIFSTGLCLWIEMAAMRDVSATET-AIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       356 lg~~~~~~~~~l~~~al~~~~a~~~-s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      ..++..++++.++..++++++.+.+ ++...+..+.+.+.++++|||++++.+++|+++|++|++.....+
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4456667889999999999997665 555778899999999999999999999999999999999886543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.68  E-value=0.00091  Score=64.31  Aligned_cols=125  Identities=15%  Similarity=0.085  Sum_probs=92.8

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhc--CcccchhHHHHHHHHHHHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRAR--DDVHTRNAGFELGLWVSLGYLMQA  209 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~--~~~~~~~~~ll~g~~~~~~~~l~~  209 (473)
                      .+++++.++++.+.+....++.|.  .+++++...+-...-.++..+++....+  ...+.-...++.|++..+++++++
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~  213 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYL  213 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHH
Confidence            457899999999999888888886  4578887777554433333333333222  222334455788999999999999


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHH----HHHHHHHHhh
Q 011986          210 LGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWF----GAVMSILGVA  258 (473)
Q Consensus       210 ~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~----g~~lal~GV~  258 (473)
                      ++.+....+.+-.+..+..++..+.+. ++||+-+++|+.    |+++.++|.+
T Consensus       214 is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  214 ISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999998 889999888654    5555555554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.64  E-value=0.0017  Score=64.50  Aligned_cols=131  Identities=18%  Similarity=0.091  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhhhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986          280 FFGIHMLRTEHISRSTNKK-DFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI  358 (473)
Q Consensus       280 ~~a~~~i~~k~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~  358 (473)
                      ++..+.+..+++.++.... .+..+.+.+.....+...+.......  ...  ...              .+...+..++
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~--~~~--~~~--------------~~~~~~~~~~   72 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF--PKS--RKI--------------PLKKYAILSF   72 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc--cCC--CcC--------------hHHHHHHHHH
Confidence            3445667777777765544 46777777777777777666554440  000  100              1333445555


Q ss_pred             HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986          359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP  429 (473)
Q Consensus       359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~  429 (473)
                      +.. ++..+-+.++++++.....+.....|+..++++++++|++.+..++++.+++.+|+++....+.+..
T Consensus        73 ~~~-~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   73 LFF-LASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             HHH-HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            444 7778888999999999999999999999999999999999999999999999999999887665444

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.60  E-value=0.0018  Score=53.65  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986          193 AGFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL  260 (473)
Q Consensus       193 ~~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li  260 (473)
                      +.+........+++++..++++.|.+.+-.+ ..+.-+.+.+++. ++||++++.+++++.+.+.||+.+
T Consensus        37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3444555677888999999999999998555 6788888999998 899999999999999999999875

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.57  E-value=1.1e-05  Score=75.65  Aligned_cols=137  Identities=20%  Similarity=0.273  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986          266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM  345 (473)
Q Consensus       266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (473)
                      ..+.|..+.-++ .++-...++.++....    ++........++-.++..|..+..-... ...... .          
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~-R----------   97 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN----DPMELASFRLLVRMLITYPCLIYYMQPV-IGPEGK-R----------   97 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc----ChhHhhhhhhhhehhhhheEEEEEeeee-ecCCCc-E----------
Confidence            457888888888 8888888888776543    3444555554554455544443332211 000000 0          


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                         -|  ++.=|+.++ .+.++.+|++++.+.+.+.++....|+++++++|++++|+.+....+|..+-+.|++++.+..
T Consensus        98 ---~~--LiLRg~mG~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen   98 ---KW--LILRGFMGF-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             ---EE--EEeehhhhh-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence               01  334455555 777788889999999999999999999999999999999999999999999999999887643

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00077  Score=55.10  Aligned_cols=68  Identities=25%  Similarity=0.345  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHhcccChh-HHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          357 GIFSTGLCLWIEMAAMRDVSAT-ETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       357 g~~~~~~~~~l~~~al~~~~a~-~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      .+++.+++|.++..++|+++.+ -.++..-+-.+.+.+.++++|||+.++.+++|.+++++|++.....
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            3445568899999999999865 5688889999999999999999999999999999999999887653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.53  E-value=0.0034  Score=52.10  Aligned_cols=65  Identities=18%  Similarity=0.394  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHhcccChhH-HHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986          358 IFSTGLCLWIEMAAMRDVSATE-TAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ  422 (473)
Q Consensus       358 ~~~~~~~~~l~~~al~~~~a~~-~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~  422 (473)
                      ++..++++.++..++|+++.+. .++...+..+.+.+.++++|||++++.+++|+++|++|++...
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4556688999999999999654 5777788999999999999999999999999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.48  E-value=0.00099  Score=54.91  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHhcccChh-HHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986          358 IFSTGLCLWIEMAAMRDVSAT-ETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       358 ~~~~~~~~~l~~~al~~~~a~-~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                      +++.++++.++..++|+++.+ ..++..-+..+.+.+.++++|||++++.+++|+.+|++|++....
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            556668899999999999865 457778899999999999999999999999999999999988754

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.0028  Score=51.81  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          191 RNAGFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       191 ~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      ..+.++.-+....++.++..++++.|.+.+-.+ ...--+.+++.++ ++||+++..+++++.+.++|++.+-.
T Consensus        30 ~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          30 LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            334455556678888999999999999998544 7888889999999 89999999999999999999987654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.43  E-value=0.0072  Score=52.57  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcC-cc----cchhHHHHHHHHHHHHHHHHH
Q 011986          136 IILLNAITVVYASNIPVIKEVEAITD-PSAFTVVRFALSAIPFIPFVLRARD-DV----HTRNAGFELGLWVSLGYLMQA  209 (473)
Q Consensus       136 ~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~~~~~~~~~~~-~~----~~~~~~ll~g~~~~~~~~l~~  209 (473)
                      +++++++..+.+....++-.+.+..+ |+.-.++.+..+++.+..+....++ +.    +..+|.++-|+++.....+..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~   82 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI   82 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence            56777778888888888877767776 9999999999999999888776654 21    234455567888888888999


Q ss_pred             HHhhccchhHHHHHHHHHHHHH-HHHHH--Hh---cCcCchHHHHHHHHHHHHhhe
Q 011986          210 LGLETSDAGRASFISMFTVIVV-PLLDG--ML---GAIVPARTWFGAVMSILGVAL  259 (473)
Q Consensus       210 ~al~~~~~~~asvi~~l~Pl~~-~ll~~--~l---~er~s~~~~~g~~lal~GV~l  259 (473)
                      +.+....++.+..+....=++. .++..  ++   ++++++.+.+|+++.++|+++
T Consensus        83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999888876555544 44555  33   689999999999999999875

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.43  E-value=0.11  Score=51.47  Aligned_cols=282  Identities=12%  Similarity=0.039  Sum_probs=163.4

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh-----------cCcccchhHHHHHHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA-----------RDDVHTRNAGFELGLWV  201 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~-----------~~~~~~~~~~ll~g~~~  201 (473)
                      ..|+++..++.++-|+..+-.|.. ++. .+|..+.-..+..-+.+|++.-.           ..+.....+..+.|++.
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkv-k~W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lW   83 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKV-KGW-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLW   83 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhc-CCc-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHH
Confidence            468999999999999999988886 333 44444444444444444443321           12334556667789999


Q ss_pred             HHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHh--------cCcCchHHHHHHHHHHHHhheeecCC--------
Q 011986          202 SLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDGML--------GAIVPARTWFGAVMSILGVALLESSG--------  264 (473)
Q Consensus       202 ~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~~l--------~er~s~~~~~g~~lal~GV~li~~~~--------  264 (473)
                      +++-..|=.+++|+..+...-| ..+.-++-.++-.++        ..+-....++|++++++|++++...+        
T Consensus        84 GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~  163 (344)
T PF06379_consen   84 GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELG  163 (344)
T ss_pred             hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhc
Confidence            9999999999999988776433 456555555554432        22333467899999999999986432        


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHHhhhh---h--cCCCCCchh----HHHHHHHHHHHHHHHHHHHhccC-CCCC
Q 011986          265 -----SPPSVGDLLNFLSAVFFGIHMLRTEHIS---R--STNKKDFLP----LLGYEVCVIALLSAVWYFIGGSL-GGTQ  329 (473)
Q Consensus       265 -----~~~~~G~~laL~aal~~a~~~i~~k~~~---~--~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~-~~~~  329 (473)
                           .++..|.++++++.+.-|..++-...-.   +  ...+.+++.    .....+..+.+.-+.+.+..... ....
T Consensus       164 ~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s  243 (344)
T PF06379_consen  164 EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWS  243 (344)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCc
Confidence                 2345899999999998888887654211   1  111122211    11111222223333333322111 1110


Q ss_pred             CCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC----hhHHHHHhhhHHHHHHHHHHHHhcCc---
Q 011986          330 GSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVS----ATETAIIYGLEPVWGAGFAWFILGER---  402 (473)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~----a~~~s~l~~l~pv~a~l~~~il~gE~---  402 (473)
                      .......     -..+....+...+..|++=. .++.+|.++-.+++    ..--.+.+.+..+++-+++++ ++|.   
T Consensus       244 ~~~d~~~-----~~~~~~~N~~~~aLaG~lWy-~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~  316 (344)
T PF06379_consen  244 WKGDYSV-----AKPPLLKNYLFCALAGVLWY-SQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGA  316 (344)
T ss_pred             ccccccc-----ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccC
Confidence            0000000     00011122333344444333 66777777766665    456677788889999999975 5663   


Q ss_pred             ---ccHhhHHHHHHHHHHHHHHhh
Q 011986          403 ---WGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       403 ---~~~~~~~G~~lIl~g~~l~~~  423 (473)
                         .-..-++|++++++++.++-+
T Consensus       317 s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  317 SKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhc
Confidence               334557899999998887654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.42  E-value=0.0072  Score=52.60  Aligned_cols=132  Identities=15%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986          270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP  349 (473)
Q Consensus       270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (473)
                      ..++++++++.-++...+..++.++..  ++..........+.+....+.+..+.. .........              
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p--------------   64 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP--------------   64 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC--------------
Confidence            357889999999999999999987654  467677777777777777776666543 111111111              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhh-HHHHHHHHHHH----HhcCcccHhhHHHHHHHHHHHHH
Q 011986          350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGL-EPVWGAGFAWF----ILGERWGATGWLGAALVLVGSLT  420 (473)
Q Consensus       350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l-~pv~a~l~~~i----l~gE~~~~~~~~G~~lIl~g~~l  420 (473)
                      |.  .++|++...+...+..+.+++++++....+... |.+.+.++|.+    .-++++++.+++|.+++++|+++
T Consensus        65 ~w--~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   65 WW--AYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hH--HhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            22  234555554666677778999998777666555 88889999986    23578999999999999999763

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.42  E-value=0.0022  Score=52.84  Aligned_cols=71  Identities=10%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          192 NAGFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       192 ~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      .+.+..-+....+++++..++++.|.+.+-.+ ..+.-+.+.+++. ++||++++.+++++.+.++||+.+..
T Consensus        30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            33344556677888999999999999998555 6788888999999 89999999999999999999998743

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.42  E-value=0.0032  Score=53.17  Aligned_cols=70  Identities=14%  Similarity=0.258  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986          194 GFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS  263 (473)
Q Consensus       194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~  263 (473)
                      .++..++..++++++..++++.|.+.+-.+ ..+.-+.+.+++. ++||++++.+++|+.+.++||+++-..
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            345556677889999999999999999777 5788889999999 899999999999999999999887543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.39  E-value=0.0012  Score=65.28  Aligned_cols=122  Identities=22%  Similarity=0.317  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986          266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM  345 (473)
Q Consensus       266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (473)
                      .+..|.+++++++++.+....+.|+-..+.++.. ..-..  .      ....  .            ..          
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-~~~~~--~------~~~~--l------------~~----------   50 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-LRAGS--G------GRSY--L------------RR----------   50 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccc--h------hhHH--H------------hh----------
Confidence            3457999999999999999999998665544211 00000  0      0000  0            00          


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                            ..-+.|.+..+++..+-..|+...+++.++++..+..++..+++.+++||+++...++|++++++|..++....
T Consensus        51 ------~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   51 ------PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             ------HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence                  01122333344555666678999999999999999999999999999999999999999999999998877654


Q ss_pred             C
Q 011986          426 S  426 (473)
Q Consensus       426 ~  426 (473)
                      .
T Consensus       125 ~  125 (300)
T PF05653_consen  125 P  125 (300)
T ss_pred             C
Confidence            3

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.36  E-value=0.0043  Score=51.66  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          195 FELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       195 ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      +..-+....+++++..++++.|.+.+-.+ ..+.-+.+.++++ ++||++++.+++|+.+.++||+++..
T Consensus        34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34445567778889999999999999666 6788888999999 89999999999999999999998754

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.26  E-value=0.0011  Score=55.00  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             HHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhccchhH
Q 011986          140 NAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGR  219 (473)
Q Consensus       140 l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~  219 (473)
                      ++..++||...+++|....+.++..-.. +..-....          -...++..+.. +++-.+-..|++.+...+.+.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~----------Ll~n~~y~ipf-~lNq~GSv~f~~~L~~~dlSl   69 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF----------LLLNPKYIIPF-LLNQSGSVLFFLLLGSADLSL   69 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH----------HHHhHHHHHHH-HHHHHHHHHHHHHHhcCCcee
Confidence            3467899999999998866554333321 21111111          01112222222 336677788999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHhcCcC-chHHHHHHHHHHHHhhee
Q 011986          220 ASFIS-MFTVIVVPLLDGMLGAIV-PARTWFGAVMSILGVALL  260 (473)
Q Consensus       220 asvi~-~l~Pl~~~ll~~~l~er~-s~~~~~g~~lal~GV~li  260 (473)
                      +..+. .+.=+||++.+++++|+. +++.++|+++.+.|+.+.
T Consensus        70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99995 888899999999776655 677899999999999875

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.07  E-value=0.002  Score=51.99  Aligned_cols=58  Identities=24%  Similarity=0.426  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHhcccChhHH-HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHH
Q 011986          357 GIFSTGLCLWIEMAAMRDVSATET-AIIYGLEPVWGAGFAWFILGERWGATGWLGAALV  414 (473)
Q Consensus       357 g~~~~~~~~~l~~~al~~~~a~~~-s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lI  414 (473)
                      .+...++++.++.+++|+++.+.+ ++...+..+...+.++++|||++++.+++|..+|
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            444667889999999999998887 6667799999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.01  E-value=0.0035  Score=60.01  Aligned_cols=133  Identities=17%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986          270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP  349 (473)
Q Consensus       270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (473)
                      |++.+++++++|+...+=.||...    -|.+.+..+......+..+.+.+..+.+..                      
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~----gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f----------------------   54 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT----GDGFFFQWVMCSGIFLVGLVVNLILGFPPF----------------------   54 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC----CCcHHHHHHHHHHHHHHHHHHHHhcCCCcc----------------------
Confidence            567899999999999998886643    346655555555555555555554432111                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChhHHH-HHhhhHHHHHHHHHHH-HhcCcc-----cHhhHHHHHHHHHHHHHHh
Q 011986          350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETA-IIYGLEPVWGAGFAWF-ILGERW-----GATGWLGAALVLVGSLTVQ  422 (473)
Q Consensus       350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s-~l~~l~pv~a~l~~~i-l~gE~~-----~~~~~~G~~lIl~g~~l~~  422 (473)
                       ..+..+|+..-..+..+-.-.++.++.+..- +....+.+.+...+.+ +||+.+     .+..++|++++++|..+..
T Consensus        55 -~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~  133 (254)
T PF07857_consen   55 -YPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS  133 (254)
T ss_pred             -eeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence             1122233322223333333455555544332 3344466677776654 565432     4788899999999999888


Q ss_pred             hcCCCCC
Q 011986          423 IFGSSSP  429 (473)
Q Consensus       423 ~~~~~~~  429 (473)
                      .-|...+
T Consensus       134 fik~~~~  140 (254)
T PF07857_consen  134 FIKSEEK  140 (254)
T ss_pred             eecCCCC
Confidence            7766553

The region concerned is approximately 280 residues long.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.76  E-value=0.0075  Score=57.82  Aligned_cols=77  Identities=17%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986          351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS  428 (473)
Q Consensus       351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~  428 (473)
                      ..+.+-+++ ..++..+.+.++++++++...++..+..+++.++.+++++.+++..||++..++++|+.+........
T Consensus        18 ~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   18 LKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            334444444 34777888899999999999999999999999999999999999999999999999999988765543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.72  E-value=0.015  Score=58.20  Aligned_cols=145  Identities=12%  Similarity=0.060  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHH-HHHHHHHHHHHH-HHhccCCCCCCCCCCCcchhhhhcc
Q 011986          267 PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYE-VCVIALLSAVWY-FIGGSLGGTQGSDPSSWTWTMFWDW  344 (473)
Q Consensus       267 ~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  344 (473)
                      ...|+++.+++++|++.+++-.||. +.-+   .. .+ |. ..+..-+..|+. ........           ......
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~---wE-~~-W~v~gi~~wl~~~~~~g~~~~~~f-----------~~~~~~   67 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KKWS---WE-TM-WSVGGIFSWLILPWLIAALLLPDF-----------WAYYSS   67 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CCCc---hh-HH-HHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHh
Confidence            4579999999999999999999874 3222   11 22 21 111111112211 11110000           000111


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcc---c----HhhHHHHHHHHH
Q 011986          345 MVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERW---G----ATGWLGAALVLV  416 (473)
Q Consensus       345 ~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~---~----~~~~~G~~lIl~  416 (473)
                      .+...+. ..+++++.-.+++..+..++++.+.+...++ .-++-+++.+++.+++||-.   +    ..-++|.+++++
T Consensus        68 ~~~~~~~-~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili  146 (345)
T PRK13499         68 FSGSTLL-PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI  146 (345)
T ss_pred             cCHHHHH-HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence            1112233 4445555556999999999999998776655 45688899999999999765   2    346789999999


Q ss_pred             HHHHHhhcCCCCC
Q 011986          417 GSLTVQIFGSSSP  429 (473)
Q Consensus       417 g~~l~~~~~~~~~  429 (473)
                      |+++..+...++.
T Consensus       147 Gi~l~s~Ag~~k~  159 (345)
T PRK13499        147 GVAIVGRAGQLKE  159 (345)
T ss_pred             HHHHHHHhhhhcc
Confidence            9999998655444

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.69  E-value=0.08  Score=46.30  Aligned_cols=137  Identities=16%  Similarity=0.142  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986          269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF  348 (473)
Q Consensus       269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (473)
                      +..+.+++++++-.+..-+..++.+..+  +|+.......+.+++++..+.+............... .           
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p-w-----------   70 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP-W-----------   70 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc-h-----------
Confidence            4567888888888888888888877654  4666666767777777776666644333222111111 1           


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccC-hhHHHHHhhhHHHHHHHHHHHHhc----CcccHhhHHHHHHHHHHHHHHhh
Q 011986          349 PWIPALYTGIFSTGLCLWIEMAAMRDVS-ATETAIIYGLEPVWGAGFAWFILG----ERWGATGWLGAALVLVGSLTVQI  423 (473)
Q Consensus       349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~-a~~~s~l~~l~pv~a~l~~~il~g----E~~~~~~~~G~~lIl~g~~l~~~  423 (473)
                       |.   +.|++...+-...-.....+++ +........-|.+.++++|.+=+.    .+++...++|++++++|+++...
T Consensus        71 -W~---~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          71 -WA---WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             -HH---HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence             22   2222222111122223556665 456666777799999999987654    68899999999999999665544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.57  E-value=0.028  Score=45.32  Aligned_cols=56  Identities=16%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHH
Q 011986          197 LGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVM  252 (473)
Q Consensus       197 ~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~l  252 (473)
                      .......+++++..++++.|.+.+-.+ ..+..+.+.+++. ++||+++..+++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            334567888999999999999999665 5789999999999 8999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.51  E-value=0.048  Score=52.26  Aligned_cols=159  Identities=14%  Similarity=0.113  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 011986          135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLET  214 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~  214 (473)
                      |++..+++++++|++++-.|... .-+++.+-++-....++.-+++... +...+...+.++-|.+...++.+-+-.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~gDg~~fQw~~~~~i~~~g~~v~~~-~~~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TGDGFFFQWVMCSGIFLVGLVVNLI-LGFPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CCCcHHHHHHHHHHHHHHHHHHHHh-cCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            46778999999999999999863 4477666666655554444444443 344556777788899999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHH-H--Hhc---CcC--chHHHHHHHHHHHHhheeec--CCC-------------------
Q 011986          215 SDAGRASFISMFTVIVVPLLD-G--MLG---AIV--PARTWFGAVMSILGVALLES--SGS-------------------  265 (473)
Q Consensus       215 ~~~~~asvi~~l~Pl~~~ll~-~--~l~---er~--s~~~~~g~~lal~GV~li~~--~~~-------------------  265 (473)
                      ...+...+|-...-+++.-.. .  +++   |.+  ++..++|++++++|.++...  ++.                   
T Consensus        79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~  158 (254)
T PF07857_consen   79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE  158 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence            999999888766555444433 3  343   322  34578899999998876542  100                   


Q ss_pred             ---C------------------CCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 011986          266 ---P------------------PSVGDLLNFLSAVFFGIHMLRTEHISRST  295 (473)
Q Consensus       266 ---~------------------~~~G~~laL~aal~~a~~~i~~k~~~~~~  295 (473)
                         .                  ...|..+++++++.|+...+=..++..+.
T Consensus       159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence               0                  12689999999999999887777665543

The region concerned is approximately 280 residues long.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.34  E-value=0.031  Score=54.00  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhc----------CcccchhHHHHHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRAR----------DDVHTRNAGFELGL  199 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~~----------~~~~~~~~~ll~g~  199 (473)
                      ...|+.++...-++=|......+.+..  .++++++.+.-.++.++....++...+          +.++.++..++.+.
T Consensus       170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~  249 (327)
T KOG1581|consen  170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST  249 (327)
T ss_pred             chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence            346888888888888888777766644  578999999999999988888866443          34456777889999


Q ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986          200 WVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL  259 (473)
Q Consensus       200 ~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l  259 (473)
                      ++.+|+.+.|+-++.-..-.-+.|+-+==++..+++. .+++++++.||+|+.+.+.|+.+
T Consensus       250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            9999999999999988777778888888889999998 79999999999999999998865

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.00  E-value=0.0028  Score=59.17  Aligned_cols=132  Identities=16%  Similarity=0.057  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986          270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP  349 (473)
Q Consensus       270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (473)
                      .++++|+=++.|+..-++..|...+     |..-.-- +.+++++.....++...    +.     ..++          
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~-----p~qQ~lG-tT~GALifaiiv~~~~~----p~-----~T~~----------   57 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGK-----PYQQTLG-TTLGALIFAIIVFLFVS----PE-----LTLT----------   57 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCC-----hhHhhhh-ccHHHHHHHHHHheeec----Cc-----cchh----------
Confidence            5688999999999998887766543     2222222 22333333222222211    00     1111          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhh-hHHHHHHHHHHHHhcCcccHhhH----HHHHHHHHHHHHHhhc
Q 011986          350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYG-LEPVWGAGFAWFILGERWGATGW----LGAALVLVGSLTVQIF  424 (473)
Q Consensus       350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~-l~pv~a~l~~~il~gE~~~~~~~----~G~~lIl~g~~l~~~~  424 (473)
                      ...+-+++++.=.++|....++++..+.+++.++.. ++-+-+.++++++|||..++.++    ++.++++.|+++..++
T Consensus        58 ~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~  137 (288)
T COG4975          58 IFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ  137 (288)
T ss_pred             hHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence            223344444444589999999999999999988765 58888999999999999997765    4667788887777654


Q ss_pred             CC
Q 011986          425 GS  426 (473)
Q Consensus       425 ~~  426 (473)
                      ++
T Consensus       138 ~~  139 (288)
T COG4975         138 DR  139 (288)
T ss_pred             cc
Confidence            43

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.52  E-value=0.035  Score=54.94  Aligned_cols=129  Identities=18%  Similarity=0.116  Sum_probs=100.0

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhc----cCChHHHHHHHHHHHHHHHH-HHHHhhcCccc------chh----HHHH
Q 011986          132 KVRSIILLNAITVVYASNIPVIKEVEA----ITDPSAFTVVRFALSAIPFI-PFVLRARDDVH------TRN----AGFE  196 (473)
Q Consensus       132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~~~-~~~~~~~~~~~------~~~----~~ll  196 (473)
                      +..|.+.++.+.+..++..++.|.++.    .+++.++..+---++.+.++ |+.........      .+.    ..++
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence            467999999999999999999998863    58899999998888888888 87665433222      111    1223


Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986          197 LGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL  260 (473)
Q Consensus       197 ~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li  260 (473)
                      ..++.+..+...|..+.++++-.-++....==.++...++ ++++++++.+.+|.+++++|+++=
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y  305 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY  305 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence            3455566677788888888888888877766667777787 789999999999999999999863

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.49  E-value=0.026  Score=47.03  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986          361 TGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV  421 (473)
Q Consensus       361 ~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~  421 (473)
                      ...+-.+|++.+++.+.+.+.++ +.+.-+++++.++++.+|..+...++|+++|++|+.++
T Consensus        51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            33566777789999999998888 49999999999998888888999999999999998754

Many members are annotated as potential transmembrane proteins.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.44  E-value=0.66  Score=40.65  Aligned_cols=128  Identities=10%  Similarity=0.083  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCcc------cchhHHHHHHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEAITD-PSAFTVVRFALSAIPFIPFVLRARDDV------HTRNAGFELGLWVSLGYL  206 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~~~~~~~~~~~~~------~~~~~~ll~g~~~~~~~~  206 (473)
                      ..++..+.+..+-.....++-.+.+..+ |+.-.+..+..+.+.+..+.+.+.+..      +..+|.+.-|+++.+..+
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt   84 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVT   84 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhh
Confidence            4566677777777777777766655555 999999999998888877776643221      224455555666666656


Q ss_pred             HHHHHhhccchhHHHHH-HHHHHHHHHHHHH--Hh---cCcCchHHHHHHHHHHHHhheee
Q 011986          207 MQALGLETSDAGRASFI-SMFTVIVVPLLDG--ML---GAIVPARTWFGAVMSILGVALLE  261 (473)
Q Consensus       207 l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~--~l---~er~s~~~~~g~~lal~GV~li~  261 (473)
                      .-........++....+ ..-.-+...++..  ++   ++++++.+++|+++.++|++++-
T Consensus        85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            66666666666555444 3444445555554  34   57889999999999999965543

>TIGR00803 nst UDP-galactose transporter

Probab=95.09  E-value=0.19  Score=47.29  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986          194 GFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL  259 (473)
Q Consensus       194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l  259 (473)
                      .+...+...++..+..+.+++.+....+++..+.++++.+++. +++|+++..+++|+.+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3445566677778888999999999999999999999999999 88999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.92  E-value=1.2  Score=44.18  Aligned_cols=66  Identities=23%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          362 GLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       362 ~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      .+..-+++.++.+.++++..+...+..+.+.++..+++++.++..||...++..+|+.+++.....
T Consensus       103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen  103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence            355568888999999999999999999999999999999999999999999999999999954433

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.26  E-value=0.31  Score=45.51  Aligned_cols=126  Identities=12%  Similarity=0.059  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhh----------cCcccchhHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRA----------RDDVHTRNAGFELGLWV  201 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~----------~~~~~~~~~~ll~g~~~  201 (473)
                      .|-++++++-.+=|.........-.  .-+.-++.+.-.+++.+.+..-++..          .+.+..+..+.++++..
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4677777777777777666544422  22345666666777776665444333          23444566677889999


Q ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986          202 SLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL  259 (473)
Q Consensus       202 ~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l  259 (473)
                      .+|..+.+.-+.+-++-.-+++..+--+|+++.+. +++..++.+||+|..+.+.|...
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            99999999999988888889999999999999999 78999999999999999988765

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.12  E-value=0.59  Score=46.68  Aligned_cols=135  Identities=12%  Similarity=0.077  Sum_probs=92.4

Q ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHhhc----cCChHHHHHHHHHHHHHHHHHHHHhh---cCc---cc---chhHHHHH
Q 011986          131 KKVRSIILLNAITVVYASNIPVIKEVEA----ITDPSAFTVVRFALSAIPFIPFVLRA---RDD---VH---TRNAGFEL  197 (473)
Q Consensus       131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~~~~~~~~~---~~~---~~---~~~~~ll~  197 (473)
                      +...|-++++++++++|...++.|.-.+    .++--.+..+--++.+++++|.++..   +..   .+   +....+..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            3478999999999999999999987643    23433333333344444444333321   111   11   12223344


Q ss_pred             HHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh-cCcCchHHHHHHHHHHHHhheeecCCC
Q 011986          198 GLW-VSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGML-GAIVPARTWFGAVMSILGVALLESSGS  265 (473)
Q Consensus       198 g~~-~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l-~er~s~~~~~g~~lal~GV~li~~~~~  265 (473)
                      ++. .++..++|.+|.-.++.-.+++-..+..-..++...++ +..+++..++|.+..++|.+++.....
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            444 35677999999999999999888877666677777755 788999999999999999999886543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.023  Score=55.33  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986          266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM  345 (473)
Q Consensus       266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (473)
                      .+..|.++++.+.++.+...++.||..++... .                       +..   .........        
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-~-----------------------~~r---a~~gg~~yl--------   62 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-S-----------------------GLR---AGEGGYGYL--------   62 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHhh-h-----------------------ccc---ccCCCcchh--------
Confidence            45678899999999999999888876655321 0                       000   000000000        


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                          -...-+.|.+..++|-.+=+.|....+++.++++..++.+...+++..+++|.++....+|+++.++|..++....
T Consensus        63 ----~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   63 ----KEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             ----hhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence                0012345666677777777778888899999999999999999999999999999999999999999999888765


Q ss_pred             CCCC
Q 011986          426 SSSP  429 (473)
Q Consensus       426 ~~~~  429 (473)
                      +++.
T Consensus       139 P~e~  142 (335)
T KOG2922|consen  139 PKEQ  142 (335)
T ss_pred             Cccc
Confidence            5443

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=91.96  E-value=0.03  Score=54.06  Aligned_cols=120  Identities=9%  Similarity=0.057  Sum_probs=76.5

Q ss_pred             HHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh----cC---c-c-----------cchhHHHHHHHH
Q 011986          140 NAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA----RD---D-V-----------HTRNAGFELGLW  200 (473)
Q Consensus       140 l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~----~~---~-~-----------~~~~~~ll~g~~  200 (473)
                      +++.++||+.....|++.+.---.+..++=+.++.++..+++...    +.   . +           +.....++-|+.
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv   81 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV   81 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence            567899999999999986544444567888888877776666443    11   0 1           111223455777


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhcCcCchHHH--HHHHHHHHHhhe
Q 011986          201 VSLGYLMQALGLETSDAGRASFIS-MFTVIVVPLLDGMLGAIVPARTW--FGAVMSILGVAL  259 (473)
Q Consensus       201 ~~~~~~l~~~al~~~~~~~asvi~-~l~Pl~~~ll~~~l~er~s~~~~--~g~~lal~GV~l  259 (473)
                      ..+++++..+|+.....+.+-++. .+.-++..++-+|+..|.++..+  .|+.+.++.+++
T Consensus        82 fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~l  143 (336)
T PF07168_consen   82 FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIIL  143 (336)
T ss_pred             hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHH
Confidence            888999999999988888776664 44444444555567777765433  244444444433

Transport is dependent on glucose and a proton gradient [].

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=91.11  E-value=0.55  Score=38.08  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhHHHHHHHhhccCC----h--HHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHH
Q 011986          138 LLNAITVVYASNIPVIKEVEAITD----P--SAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG  211 (473)
Q Consensus       138 l~l~a~~~wg~~~~~~k~~~~~~~----p--~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~a  211 (473)
                      -++...++||...++.|....+.+    +  .-..+.|=......             .+.+.+.. ++.-.+-.+||.-
T Consensus         7 ~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l-------------~w~Y~iPF-llNqcgSaly~~t   72 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL-------------NWEYLIPF-LLNQCGSALYYLT   72 (125)
T ss_pred             HHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH-------------hHHHHHHH-HHHHhhHHHHHHH
Confidence            456678899999999987743322    1  11111111111100             12222222 3355666789999


Q ss_pred             hhccchhHHHHHH-HHHHHHHHHHHHHhcCcCchH-HHHHHHHHHHHhheee
Q 011986          212 LETSDAGRASFIS-MFTVIVVPLLDGMLGAIVPAR-TWFGAVMSILGVALLE  261 (473)
Q Consensus       212 l~~~~~~~asvi~-~l~Pl~~~ll~~~l~er~s~~-~~~g~~lal~GV~li~  261 (473)
                      +++.+.+.+..+. .+.-.|+.+.+..+||+...+ .++|..+..+|+.+.+
T Consensus        73 La~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   73 LASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            9999999998885 567779999999999888755 6789999999988754

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=90.45  E-value=1.4  Score=43.81  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccch
Q 011986          268 SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVA  347 (473)
Q Consensus       268 ~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (473)
                      ..|+++..+++++-+.+++=.||+.+- +    .........+.+.+..|+....-..+.          +.......+.
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~W-s----WEs~Wlv~gi~swli~P~~~a~l~ip~----------~~~i~~~~~~   70 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKGW-S----WESYWLVQGIFSWLIVPWLWALLAIPD----------FFSIYSATPA   70 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCCc-c----HHHHHHHHHHHHHHHHHHHHHHHhCCc----------HHHHHHhCCh
Confidence            478999999999999999999887432 2    222222223333334444332211111          0111111111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccChhH-HHHHhhhHHHHHHHHHHHHhc-------CcccHhhHHHHHHHHHHHH
Q 011986          348 FPWIPALYTGIFSTGLCLWIEMAAMRDVSATE-TAIIYGLEPVWGAGFAWFILG-------ERWGATGWLGAALVLVGSL  419 (473)
Q Consensus       348 ~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~-~s~l~~l~pv~a~l~~~il~g-------E~~~~~~~~G~~lIl~g~~  419 (473)
                      ..+....+.|++= +++-..|-.++|+++.+. .++..-+.-+++.++--++.|       ++-....++|.++.++|+.
T Consensus        71 ~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa  149 (344)
T PF06379_consen   71 STLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA  149 (344)
T ss_pred             hHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence            2233334444433 366677778899988654 344445555555555444433       2334678899999999999


Q ss_pred             HHhhcCCCCC
Q 011986          420 TVQIFGSSSP  429 (473)
Q Consensus       420 l~~~~~~~~~  429 (473)
                      ++.+....+.
T Consensus       150 i~g~AG~~Ke  159 (344)
T PF06379_consen  150 ICGKAGSMKE  159 (344)
T ss_pred             HHhHHHHhhh
Confidence            9988765544

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.91  E-value=2  Score=42.18  Aligned_cols=127  Identities=10%  Similarity=-0.043  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCc---------c---cchhHHHHHH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRARDD---------V---HTRNAGFELG  198 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~~~~---------~---~~~~~~ll~g  198 (473)
                      ..|+.+++...+.-+...+..|...+  ++.-+.+.++..+++.+.+.......+..         .   ..+-...+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            45888888888888888888887743  67788999999999988888776544320         1   1123344556


Q ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986          199 LWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL  259 (473)
Q Consensus       199 ~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l  259 (473)
                      ++.++-.++.+++.+..++...++.....-..+.+... +.++++++...+|+.++++|-++
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~  297 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVL  297 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhH
Confidence            66666678888888988888877777555555555555 56789999999999988877654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=89.14  E-value=0.28  Score=44.50  Aligned_cols=63  Identities=19%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          363 LCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       363 ~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      .+.++|..|+++++++.++.+..-+--|..+++++++|+++....++.+++.+.|++++.+..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            456678889999999999999999999999999999999999999999999999998887643

>PRK02237 hypothetical protein; Provisional

Probab=86.83  E-value=5.7  Score=32.60  Aligned_cols=45  Identities=27%  Similarity=0.355  Sum_probs=38.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          380 TAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       380 ~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      .+...-.-.+.++++++.+-|++|+...++|+++.++|+.++.+.
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~  106 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA  106 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence            455566778889999999999999999999999999999887653

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.77  E-value=4.2  Score=39.08  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhcC-----------cccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 011986          160 TDPSAFTVVRFALSAIPFIPFVLRARD-----------DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTV  228 (473)
Q Consensus       160 ~~p~~~~~~R~~~a~l~~~~~~~~~~~-----------~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~P  228 (473)
                      -+..+++++.+.++++++++.+...++           +.+.....++.+..+.+|......=++.-.+..++.+...-=
T Consensus       218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK  297 (367)
T KOG1582|consen  218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK  297 (367)
T ss_pred             CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence            356788888888888888877765542           223333444555555555433222234446777778887778


Q ss_pred             HHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC-CCCCHHHH
Q 011986          229 IVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG-SPPSVGDL  272 (473)
Q Consensus       229 l~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~-~~~~~G~~  272 (473)
                      .+|.++++ ++.++++.....+.++.+.|+.+=..+. +...+..+
T Consensus       298 avTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~~~~~~  343 (367)
T KOG1582|consen  298 AVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKIPLASL  343 (367)
T ss_pred             HHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCCchhhH
Confidence            88999999 8899999999999999999999966654 33333333

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=85.91  E-value=7.6  Score=31.78  Aligned_cols=45  Identities=29%  Similarity=0.401  Sum_probs=38.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          380 TAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       380 ~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      .+...-+-.+.++++++.+-|++|+...++|+.+.++|+.++.+.
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~  104 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA  104 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence            355566778899999999999999999999999999999887654

; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=84.48  E-value=1.8  Score=41.74  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          363 LCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       363 ~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      .+-.+.+.++...+|+..-++.....+|+.+++.-+++..++..+|+|+..+.+|.+++...
T Consensus        98 ~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   98 AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            55566677999999999999999999999999999999999999999999999998876654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=83.99  E-value=4.6  Score=37.65  Aligned_cols=122  Identities=14%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHh--hccCChHHHHHHHHHHHHHHHHHHHHhhcC-c---------ccchhHHHHHHHHH
Q 011986          134 RSIILLNAITVVYASNIPVIKEV--EAITDPSAFTVVRFALSAIPFIPFVLRARD-D---------VHTRNAGFELGLWV  201 (473)
Q Consensus       134 ~g~ll~l~a~~~wg~~~~~~k~~--~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~-~---------~~~~~~~ll~g~~~  201 (473)
                      .|++++..-++.-+.....+|.-  +.++.-++..++..+++.++++.+-..... .         .....+.++.|++.
T Consensus       155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s  234 (309)
T COG5070         155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS  234 (309)
T ss_pred             CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence            35666555555555445555544  346778899999999999988877765431 1         11233445556655


Q ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHH
Q 011986          202 SLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSIL  255 (473)
Q Consensus       202 ~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~  255 (473)
                      +.--++--|.++-++...-+++..+.-+-.++.+. +++|+.++..+++++++++
T Consensus       235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl  289 (309)
T COG5070         235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL  289 (309)
T ss_pred             hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence            54456667778888888888888888888888888 8899999998888876653

>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines

Probab=83.91  E-value=59  Score=33.94  Aligned_cols=61  Identities=16%  Similarity=0.028  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986          354 LYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS  427 (473)
Q Consensus       354 l~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~  427 (473)
                      +=.+++..-..|..|. |+...|...-+..           . .--+..-++..++|.++.++++++...+...
T Consensus       247 Lqssvv~~Y~~yL~~S-Alss~P~~~CNp~-----------~-~~~~~~~~~~~iig~i~~~~~v~yss~ra~~  307 (429)
T PF03348_consen  247 LQSSVVSLYTTYLTWS-ALSSEPDKECNPS-----------G-SRSGSWNTWQSIIGLIFTFVSVLYSSFRASS  307 (429)
T ss_pred             ccHHHHHHHHHHHHHH-HHHcCCCcccCCc-----------c-cccCCcchHHHHHHHHHHHHHHHHhcccccc
Confidence            3455555556677665 8887775444433           0 1123456688899999999998887765543

The function of these proteins is unknown. ; GO: 0016020 membrane

>PRK02237 hypothetical protein; Provisional

Probab=83.00  E-value=14  Score=30.37  Aligned_cols=47  Identities=21%  Similarity=0.200  Sum_probs=32.4

Q ss_pred             chhHHHHHH-HHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986          216 DAGRASFIS-MFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES  262 (473)
Q Consensus       216 ~~~~asvi~-~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~  262 (473)
                      ..+.+-.-+ ....+...+-.+ +-|+|+++..++|..++++|+.++..
T Consensus        57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~  105 (109)
T PRK02237         57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY  105 (109)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence            344443333 344444445555 45899999999999999999988754

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=81.93  E-value=21  Score=35.06  Aligned_cols=128  Identities=15%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHhhcCccc--------------chhH
Q 011986          133 VRSIILLNAITVVYASNIPVIKEVEAIT-----DPSAFTVVRFALSAIPFIPFVLRARDDVH--------------TRNA  193 (473)
Q Consensus       133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~-----~p~~~~~~R~~~a~l~~~~~~~~~~~~~~--------------~~~~  193 (473)
                      ..|..+...+.++=|+-+.+.+.+.++-     +|+...+.-.-+..+.+++..+.-.+...              .++.
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            4699999999999999999998886433     47777766655555555555543321110              1111


Q ss_pred             HHHHHHHHHHHHH---HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986          194 GFELGLWVSLGYL---MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL  260 (473)
Q Consensus       194 ~ll~g~~~~~~~~---l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li  260 (473)
                      .-.+++.+...+.   .=+.=+..++.-..++..---=+.+.+++. +++++++...|+|..+++.|+.+=
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            1112222222222   222223444444444444444566777887 789999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.94
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.61
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.53
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.4

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.94  E-value=1.5e-09  Score=92.82  Aligned_cols=71  Identities=17%  Similarity=0.324  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986          355 YTGIFSTGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG  425 (473)
Q Consensus       355 ~lg~~~~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~  425 (473)
                      .++++++++++++|++++++.+++.+..+ .++.|+++.++++++|||++++.+++|+++|++|++++...+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            46777888999999999999999999888 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.61  E-value=2.1e-07  Score=76.72  Aligned_cols=70  Identities=17%  Similarity=0.327  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986          355 YTGIFSTGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF  424 (473)
Q Consensus       355 ~lg~~~~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~  424 (473)
                      .++++..++++.++.+++|+.+.+.+..+ ..+.|+++.++++++|||++++.+++|.++|++|+++....
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            46677788999999999999999999888 89999999999999999999999999999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.53  E-value=1.2e-06  Score=72.04  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 011986          135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLET  214 (473)
Q Consensus       135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~  214 (473)
                      .+++++++.++-.......|... ++.                           + ..+.+...+....+++++.+++++
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~-~~~---------------------------~-~~~~~~~~~~~~~~~~~~~~al~~   53 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSE-GFT---------------------------R-LWPSVGTIICYCASFWLLAQTLAY   53 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-Ccc---------------------------h-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777777777777778642 211                           0 112234445567888999999999


Q ss_pred             cchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986          215 SDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS  263 (473)
Q Consensus       215 ~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~  263 (473)
                      .|.+.+..+ ..+.|+++.++++ ++||++++.+++|+++.++||+++...
T Consensus        54 ~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           54 IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999888 7999999999999 899999999999999999999988654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.40  E-value=4.7e-07  Score=77.32  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986          196 ELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS  263 (473)
Q Consensus       196 l~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~  263 (473)
                      +..+...++++++++++++.+++.+..+ .++.|+++.++++ ++||++++.+++|+++.++||+++...
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4445577889999999999999999999 8999999999999 899999999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.003

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 1/208 (0%)

Query: 205 YLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSG 264
           +L     +  SD G          ++   L G+L   +  R +   +++ + V       
Sbjct: 33  WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92

Query: 265 SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGS 324
                    N L     G   L     + +   + F+  +          + ++  +G +
Sbjct: 93  FIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA 152

Query: 325 LGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIY 384
           LG +      +     F  W+ +   +       F+          A    +      + 
Sbjct: 153 LGASIVGIMFTINN-QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK 211

Query: 385 GLEPVWGAGFAWFILGERWGATGWLGAA 412
               ++     WF+     G +      
Sbjct: 212 LALELFRQPKLWFLSLYVIGVSCTYDVF 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00