Citrus Sinensis ID: 011994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MEKEKTKKNTEEVEEAADSIPNSKSNGNSSKGSNSASGGEDSEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNTNDKKPAEN
Secondary Structure (PSIPRED)
cHHHHccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccccEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcHHHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEccHHHHHHHHHHHHHHccccHcccccHEEHcccccHHHHHHHHcccccccccccccccHHHHccHHHHHHHHEcccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mekektkkNTEEVEEAadsipnsksngnsskgsnsasggedsedkssifSLSHIklncrntvskydFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLvdnslldvsQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQrlnlpnvlqtDMVYELLRtstdaplssspvwarnfsssEELVTEFVRECRIVRKGLAGDLKKAmkdgkpiiiegihldpsiylmdddskapatttektnsesvpsddnpvtqvesnsasvcvsdwengnnspeqpstggkisseQVNKIADSLESIVLAgtssenkgetpkdpgvdrntsvkkeksgpdpiiiPIVLKMADFDHKALLEEWILThtfgdkclvqNKDELVSKLKTIQNYLCSFKSQGVTVVNVsattfpqtLDWLHGYLLQCIEKGIssvsntndkkpaen
Flexible Loop (DISEMBL)
mekektkknteeveeaadsipnsksngnsskgsnsasggedsEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTstdaplssspvWARNFSSSEELVTEFVRECRIVRKGLagdlkkamkdgkPIIIEGIHLDPSIYLMDDDSKAPATttektnsesvpsddnpvtqVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAgtssenkgetpkdpgvdrntsvkkeksgpdpiiIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKgissvsntndkkpaen
Low Complexity Region (SEG)
MekektkknteeveeAADSIPnsksngnsskgsnsasggEDSEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVaikialelkkllVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNTNDKKPAEN
Disordered region (IsUnstruct)
***********************************************IFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTD******PVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLM*********************************************************************************************************PIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGI**************
Disordered Region (DISOPRED)
**************************************************************SKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSK***********************************************************************************************KSGPDPIIIPIVLKMADFDHKALLEE*****************ELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCI******************
Disordered Region (DISEMBL)
**********************************************SIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSK****************************ASVCVSDWEN****************EQVNKIADSLESIVLAGT************************SGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVS**********
Disordered Region (DISPRO)
*************************************************************VSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENG***************************************************SV***KSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVS**********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKEKTKKNTEEVEEAADSIPNSKSNGNSSKGSNSASGGEDSEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNTNDKKPAEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q8TGY9	327	2-phosphoglycerate kinase	yes	no	0.384	0.556	0.300	2e-17
O57882	301	2-phosphoglycerate kinase	yes	no	0.431	0.677	0.302	7e-17
Q8U4K7	302	2-phosphoglycerate kinase	yes	no	0.386	0.605	0.312	1e-16
Q9V2C6	302	2-phosphoglycerate kinase	yes	no	0.376	0.589	0.320	4e-16
Q58877	309	2-phosphoglycerate kinase	yes	no	0.376	0.576	0.283	1e-15
A6UQ76	313	2-phosphoglycerate kinase	yes	no	0.397	0.600	0.305	2e-14
A6VH17	312	2-phosphoglycerate kinase	yes	no	0.369	0.560	0.301	6e-14
A4FW93	313	2-phosphoglycerate kinase	yes	no	0.369	0.559	0.301	2e-13
Q6LXC1	312	2-phosphoglycerate kinase	yes	no	0.376	0.570	0.300	2e-13
A9A9N2	313	2-phosphoglycerate kinase	yes	no	0.369	0.559	0.290	1e-12

>sp|Q8TGY9|PGK2_METKA 2-phosphoglycerate kinase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pgk2 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 11/193 (5%)

Query: 80  HYYV-FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERR 138
           HY + FSR +L+R LT   +  H A +IAL++K+ L D  + ++S  +L   +   +E  
Sbjct: 33  HYEMPFSRGVLARSLTAIGVEPHKAYEIALKIKEELQDEGIEEISTDELADIIRTKLEE- 91

Query: 139 GYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198
              E    RY +  R   +  P+++L+ G + VG STIA+++  RL + NV+ TD + E+
Sbjct: 92  -IDETLAERYELWRRIKKREEPIIVLIGGASGVGTSTIASEVGHRLGITNVIGTDAIREV 150

Query: 199 LRTSTDAPL------SSSPVWAR-NFSSSEE-LVTEFVRECRIVRKGLAGDLKKAMKDGK 250
           +R      L      SS   W R  +  +E+ ++T F+     V  G+ G + +++ +G 
Sbjct: 151 MRRVLAEELYPTLYESSYTAWKRLRYEPAEDPVITGFLDHSEPVVVGIEGVVNRSINEGI 210

Query: 251 PIIIEGIHLDPSI 263
            +I+EG+H+ P +
Sbjct: 211 HVIVEGVHIVPRL 223

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: -

>sp|O57882|PGK2_PYRHO 2-phosphoglycerate kinase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pgk2 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 21/225 (9%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FSR +L+R +T   I   +A  IA+E+++ LV      V++ ++    ++ +  +G+ EE
Sbjct: 15  FSRGILTRSITSVGIDVDLAYSIAIEVQEELVKKGKTIVTKDEIRKLTYQKLIEKGFKEE 74

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
              RY    RF   +VPL+IL+ G   VGKSTIAT+LA RL + +V+ TD + E+LR   
Sbjct: 75  A-KRYIFWRRFRKMKVPLIILLGGPTGVGKSTIATELAFRLGIRSVIGTDSIREVLRKII 133

Query: 204 DAPL------SSSPVW--ARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIE 255
              L      S+   W   +   +   +V  F  +   V  G+   +++A+++G   IIE
Sbjct: 134 TPELLPTIHTSTFLAWKELKGTVTDSPIVAGFESQVSAVTVGINAIIERAVREGLNAIIE 193

Query: 256 GIHLDPS----------IYLMDDDSK--APATTTEKTNSESVPSD 288
           GIH+ P           +Y++   S+    A   E+T     P+D
Sbjct: 194 GIHVVPGFVKVEGEMTFMYMLIARSREDLEARFYERTRYSKRPAD 238

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|Q8U4K7|PGK2_PYRFU 2-phosphoglycerate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pgk2 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 9/192 (4%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FSR +L+R +T   +   +A  IA E+++ L+      V++ ++    ++ +  +G+ EE
Sbjct: 15  FSRGILTRSITSVGVDVDLAYAIATEVQEELIRQGKKVVTKEEIRNITYQKLVEKGFKEE 74

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
              RY    RF   ++PL+IL+ G   VGKSTIAT+LA RL + +V+ TD + E++R   
Sbjct: 75  A-KRYLFWRRFRKLKIPLIILLGGPTGVGKSTIATELAFRLGIRSVIGTDTIREVMRKII 133

Query: 204 DAPL------SSSPVWA--RNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIE 255
              L      S+   W   R   +   ++  F  +   V  G+   +++A+K+G   IIE
Sbjct: 134 TPELLPTIHTSTFLAWKELRGTVTGSPIIAGFESQVNAVAVGVNAVIQRAIKEGLNAIIE 193

Query: 256 GIHLDPSIYLMD 267
           GIHL P    +D
Sbjct: 194 GIHLVPGFIKID 205

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|Q9V2C6|PGK2_PYRAB 2-phosphoglycerate kinase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pgk2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 9/187 (4%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FSR +L+R +T   I   +A  IA+E+++ L       V++ ++    ++ +  +G+ EE
Sbjct: 15  FSRGILTRSITSVGIDVDLAYSIAIEVQEELTRKGKSIVTKDEIRKLTYQKLVEKGFKEE 74

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
              RY    RF   +VPL+IL+ G   VGKSTIAT+LA RL + +V+ TD + E+LR   
Sbjct: 75  A-KRYLFWRRFRKMKVPLLILLGGPTGVGKSTIATELAFRLGIRSVIGTDSIREVLRKVI 133

Query: 204 DAPL------SSSPVW--ARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIE 255
              L      S+   W   +  +S   ++  F  +   V  G+   +++A ++G   IIE
Sbjct: 134 TPELLPTIHTSTFLAWKEIKGTTSGSPIIAGFESQVSAVAVGVNAIIERAKREGLNAIIE 193

Query: 256 GIHLDPS 262
           GIH+ P 
Sbjct: 194 GIHVVPG 200

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|Q58877|PGK2_METJA 2-phosphoglycerate kinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pgk2 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 9/187 (4%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FS+ +L+R LT   +   +A +IA ++ ++L   ++  + ++DL   ++  +  + Y E 
Sbjct: 18  FSKGILARSLTAAGLKPSIAYRIAWDIYEMLKKENIRVIDKADLRRRVYYYLISKNYDE- 76

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
            +++  ++ R    R P+VIL+ G + VG STIA ++A RL +P+V+ TD + E++R   
Sbjct: 77  -VAKKYLLWRMVLGRRPIVILIGGASGVGTSTIAFEIASRLGIPSVIGTDSIREVMRKVI 135

Query: 204 DAPL------SSSPVW-ARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEG 256
              L      SS   W         + +  F R    V  G+ G + + + +G+ +IIEG
Sbjct: 136 SRDLIPTLYESSYTAWKVLRDDEGNKYIKGFERHSEAVLTGVEGVIDRCLVEGQSVIIEG 195

Query: 257 IHLDPSI 263
            HL P++
Sbjct: 196 THLVPTL 202

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|A6UQ76|PGK2_METVS 2-phosphoglycerate kinase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pgk2 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 15/203 (7%)

Query: 74  LGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFK 133
           L  + D+   FS+ LL+R LT   +    +  +A E+++ L D  L  +S+ +L   ++ 
Sbjct: 11  LVKDKDYEMPFSKGLLTRSLTAAGMKPSESYILAREIERDLTDQGLRKISKDELRRRVYY 70

Query: 134 LMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193
            +  R Y  E I+   ++ R   ++  ++ILV G + VG STIA +LA RL +P+V+ TD
Sbjct: 71  ALINRDY--EDIAEKYLLWRRVLKKHSIIILVGGASGVGTSTIAFELASRLGIPSVIGTD 128

Query: 194 MVYELLRTSTDAPL------SSSPVW-ARNFSSSEELVTE------FVRECRIVRKGLAG 240
            + E++R S    L      SS   W A   SS+EE  T+      F R    V  G+  
Sbjct: 129 SIREVMRRSISKDLVPMLYESSYTAWKALRHSSAEEYDTKEMHLLGFERHVEPVLIGIES 188

Query: 241 DLKKAMKDGKPIIIEGIHLDPSI 263
            + +++ +G  +I+EG H+ P +
Sbjct: 189 IIDRSLTEGMSVILEGTHIVPGL 211

Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) (taxid: 406327)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|A6VH17|PGK2_METM7 2-phosphoglycerate kinase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pgk2 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 21/196 (10%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGY--- 140
           FS+ LL+R L+   +    +  +A E+++ L + ++L +S+ +L   ++  +  R Y   
Sbjct: 21  FSKGLLARSLSAAGMKPSESYTLAREIERDLTEQNVLKISKDELRRRVYYTLINRDYEGI 80

Query: 141 GEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200
           GE+Y+   R++     ++  ++ILV G++ VG STIA +LA RL +P+V+ TD + E++R
Sbjct: 81  GEKYLLWRRVL-----KKHSIIILVGGSSGVGTSTIAFELASRLGIPSVIGTDSIREVMR 135

Query: 201 TSTDAPL------SSSPVW-ARNFSSSEELVTE------FVRECRIVRKGLAGDLKKAMK 247
            S    L      SS   W A   S  EE  T+      F R    V  G+   + +++ 
Sbjct: 136 RSISKDLVPMLYESSYTAWTALRRSQWEEQDTKGMHLLGFERHVEPVLLGIESIIDRSLT 195

Query: 248 DGKPIIIEGIHLDPSI 263
           +G  +IIEG H+ P +
Sbjct: 196 EGTSVIIEGTHIVPGL 211

Methanococcus maripaludis (strain C7 / ATCC BAA-1331) (taxid: 426368)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|A4FW93|PGK2_METM5 2-phosphoglycerate kinase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pgk2 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 21/196 (10%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGY--- 140
           FS+ LL+R LT   +    +  +A E+++ L + ++L +S+ +L   ++  +  R Y   
Sbjct: 21  FSKGLLARSLTAAGMKPSESYTLAREIERDLNEQNVLKISKDELRRRVYYTLINRDYEGI 80

Query: 141 GEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200
           GE+Y+   R++ +       ++ILV G++ VG STIA +LA RL +P+V+ TD + E++R
Sbjct: 81  GEKYLLWRRVLKKH-----SIIILVGGSSGVGTSTIAFELASRLGIPSVIGTDSIREVMR 135

Query: 201 TSTDAPL------SSSPVW-ARNFSSSEELVTE------FVRECRIVRKGLAGDLKKAMK 247
            S    L      SS   W A   S  +E  T+      F R    V  G+   + +++ 
Sbjct: 136 RSISKDLVPMLYESSYTAWTALRRSQWDEQDTKEMHLLGFERHVEPVLLGIESIIDRSLT 195

Query: 248 DGKPIIIEGIHLDPSI 263
           +G  +IIEG H+ P +
Sbjct: 196 EGTSVIIEGTHIVPGL 211

Methanococcus maripaludis (strain C5 / ATCC BAA-1333) (taxid: 402880)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|Q6LXC1|PGK2_METMP 2-phosphoglycerate kinase OS=Methanococcus maripaludis (strain S2 / LL) GN=pgk2 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 15/193 (7%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FS+ LL+R LT   +    +  +A ++++ L + ++L +S+ +L   ++  +  R Y  E
Sbjct: 20  FSKGLLARSLTAAGMKPSASYTLARDIERELNEQNVLKISKDELRRRVYYTLINRDY--E 77

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
            I+   ++ R   ++  ++ILV G++ VG STIA +LA RL +P+V+ TD + E++R S 
Sbjct: 78  AIAEKYLLWRRILKKHSIIILVGGSSGVGTSTIAFELASRLGIPSVIGTDSIREVMRRSI 137

Query: 204 DAPL------SSSPVW-ARNFSSSEEL------VTEFVRECRIVRKGLAGDLKKAMKDGK 250
              L      SS   W A   SS EE       +  F R    V  G+   + +++ +G 
Sbjct: 138 SKDLVPMLYESSYTAWTALRKSSWEEQDSKEMHLLGFERHVEPVLLGIESIIDRSLTEGT 197

Query: 251 PIIIEGIHLDPSI 263
            +IIEG H+ P +
Sbjct: 198 SVIIEGTHIVPGL 210

Methanococcus maripaludis (strain S2 / LL) (taxid: 267377)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

>sp|A9A9N2|PGK2_METM6 2-phosphoglycerate kinase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pgk2 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 21/196 (10%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGY--- 140
           FS+ LL+R L+   +    +  +A E+++ L + ++L +S+ +L   ++  +  R Y   
Sbjct: 21  FSKGLLARSLSAAGMKPSESYTLAREIERDLNEQNVLKISKDELRRRVYYTLINRDYEGI 80

Query: 141 GEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200
           GE+Y+   R++ +       ++ILV G++ VG STIA +LA RL +P+V+ TD + E++R
Sbjct: 81  GEKYLLWRRVLKKH-----SIIILVGGSSGVGTSTIAFELASRLGIPSVIGTDSIREVMR 135

Query: 201 TSTDAPL------SSSPVW-ARNFSSSEELVTE------FVRECRIVRKGLAGDLKKAMK 247
            S    L      SS   W A   S  +E  T+      F R    V  G+   + +++ 
Sbjct: 136 RSISKDLVPMLYESSYTAWTALRRSPWDEQDTKEMHLLGFERHVEPVLLGIESIIDRSLT 195

Query: 248 DGKPIIIEGIHLDPSI 263
           +G  +I+EG H+ P +
Sbjct: 196 EGTSVILEGTHIVPGL 211

Methanococcus maripaludis (strain C6 / ATCC BAA-1332) (taxid: 444158)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
225455062	483	PREDICTED: uncharacterized protein LOC10	0.866	0.848	0.772	0.0
297745079	659	unnamed protein product [Vitis vinifera]	0.866	0.622	0.772	0.0
224138484	465	predicted protein [Populus trichocarpa]	0.875	0.890	0.763	1e-180
255539809	448	conserved hypothetical protein [Ricinus	0.898	0.948	0.718	1e-179
449461235	469	PREDICTED: uncharacterized protein LOC10	0.972	0.980	0.675	1e-176
356529869	448	PREDICTED: uncharacterized protein LOC10	0.885	0.935	0.707	1e-173
356542495	446	PREDICTED: uncharacterized protein LOC10	0.885	0.939	0.700	1e-171
224071515	398	predicted protein [Populus trichocarpa]	0.811	0.964	0.751	1e-168
357121048	462	PREDICTED: uncharacterized protein LOC10	0.875	0.896	0.666	1e-159
15240256	447	2-phosphoglycerate kinase-related protei	0.915	0.968	0.626	1e-158

>gi|225455062|ref|XP_002263933.1| PREDICTED: uncharacterized protein LOC100257148 [Vitis vinifera]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/413 (77%), Positives = 353/413 (85%), Gaps = 3/413 (0%)

Query: 50  SLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALE 109
           SL  ++ + RN  SKYDFVKVKVWLGDNADHYYV SRFLLSRMLTVTKIPNHVAIKIALE
Sbjct: 58  SLPPVRFSTRNASSKYDFVKVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAIKIALE 117

Query: 110 LKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTA 169
           LKKLL+DNSLLDVSQSDLEANLFKLMERRGYG+EYI+RYRMMTRFHHQRVPLVILVCGTA
Sbjct: 118 LKKLLIDNSLLDVSQSDLEANLFKLMERRGYGQEYINRYRMMTRFHHQRVPLVILVCGTA 177

Query: 170 CVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVR 229
           CVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL+S+PVWAR FSSSEEL+TEF R
Sbjct: 178 CVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWAREFSSSEELITEFCR 237

Query: 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTT---EKTNSESVP 286
           +CRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSK     T   E+ NS SV 
Sbjct: 238 QCRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKLSTNMTTKVEEPNSLSVK 297

Query: 287 SDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSE 346
           SDDN    +E+N  + C    +N N++ E      KIS++QV+K++D LESI L G  S+
Sbjct: 298 SDDNTAKVMENNFENACARQSKNSNDASENTKAEDKISADQVDKVSDFLESINLTGHVSK 357

Query: 347 NKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQ 406
           NKGE  KDP  D N    KEKS  +PII+PIVLKMA+FDHKALLEEWI T TF DKCL+Q
Sbjct: 358 NKGEAVKDPETDTNPPAGKEKSVAEPIIVPIVLKMAEFDHKALLEEWISTRTFSDKCLLQ 417

Query: 407 NKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGI 459
           +KD+L+S LKTIQ+YLCSFKSQG+TVVN+SATTFPQTLDWLH YLLQCIE+GI
Sbjct: 418 DKDKLISNLKTIQDYLCSFKSQGLTVVNISATTFPQTLDWLHSYLLQCIEQGI 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745079|emb|CBI38671.3| unnamed protein product [Vitis vinifera]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/413 (77%), Positives = 353/413 (85%), Gaps = 3/413 (0%)

Query: 50  SLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALE 109
           SL  ++ + RN  SKYDFVKVKVWLGDNADHYYV SRFLLSRMLTVTKIPNHVAIKIALE
Sbjct: 234 SLPPVRFSTRNASSKYDFVKVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAIKIALE 293

Query: 110 LKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTA 169
           LKKLL+DNSLLDVSQSDLEANLFKLMERRGYG+EYI+RYRMMTRFHHQRVPLVILVCGTA
Sbjct: 294 LKKLLIDNSLLDVSQSDLEANLFKLMERRGYGQEYINRYRMMTRFHHQRVPLVILVCGTA 353

Query: 170 CVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVR 229
           CVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL+S+PVWAR FSSSEEL+TEF R
Sbjct: 354 CVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWAREFSSSEELITEFCR 413

Query: 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTT---EKTNSESVP 286
           +CRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSK     T   E+ NS SV 
Sbjct: 414 QCRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKLSTNMTTKVEEPNSLSVK 473

Query: 287 SDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSE 346
           SDDN    +E+N  + C    +N N++ E      KIS++QV+K++D LESI L G  S+
Sbjct: 474 SDDNTAKVMENNFENACARQSKNSNDASENTKAEDKISADQVDKVSDFLESINLTGHVSK 533

Query: 347 NKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQ 406
           NKGE  KDP  D N    KEKS  +PII+PIVLKMA+FDHKALLEEWI T TF DKCL+Q
Sbjct: 534 NKGEAVKDPETDTNPPAGKEKSVAEPIIVPIVLKMAEFDHKALLEEWISTRTFSDKCLLQ 593

Query: 407 NKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGI 459
           +KD+L+S LKTIQ+YLCSFKSQG+TVVN+SATTFPQTLDWLH YLLQCIE+GI
Sbjct: 594 DKDKLISNLKTIQDYLCSFKSQGLTVVNISATTFPQTLDWLHSYLLQCIEQGI 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138484|ref|XP_002326614.1| predicted protein [Populus trichocarpa] gi|222833936|gb|EEE72413.1| predicted protein [Populus trichocarpa]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 319/418 (76%), Positives = 353/418 (84%), Gaps = 4/418 (0%)

Query: 59  RNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNS 118
           RN  SKYDFVKV+VWLGDNADHYYV SRFLLSRMLTVTKIPNHVAIKIALELKKLL+DNS
Sbjct: 49  RNASSKYDFVKVRVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAIKIALELKKLLIDNS 108

Query: 119 LLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIAT 178
           LLDVSQSDLEANLFKLMERRGYGEEYI+RY+MMTRFHHQRVPLVILVCGTACVGKSTIAT
Sbjct: 109 LLDVSQSDLEANLFKLMERRGYGEEYINRYKMMTRFHHQRVPLVILVCGTACVGKSTIAT 168

Query: 179 QLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG- 237
           QLAQRLNLPNVLQTDMVYELLRTSTDAPL+S+PVWAR FSSSEEL+TEF RECRIVRKG 
Sbjct: 169 QLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWAREFSSSEELITEFCRECRIVRKGS 228

Query: 238 LAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKT--NSESVPSDDNPVTQV 295
           LAGDLKKAMKDGKPIIIEGIHLDPSIYLMD+++K PA   EK+  N  SV  DD+P  Q+
Sbjct: 229 LAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEENKLPAKMPEKSEMNPVSVTPDDDPARQM 288

Query: 296 ESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDP 355
           E++S SV  +  EN N +P   ++    S  QVNK+ DS  S   AG+  +NKGET K  
Sbjct: 289 ENSSTSVSRNHPENINCTPGDLASEEGKSVNQVNKVVDSQGSRDKAGSIVDNKGETVKGL 348

Query: 356 GVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKL 415
             DR TSV   KSGP+PIIIPIVLKMA+FDHKALLEEWI T +F DKC V+ KD L++ L
Sbjct: 349 EGDRKTSVSL-KSGPEPIIIPIVLKMAEFDHKALLEEWISTRSFSDKCPVEEKDRLITNL 407

Query: 416 KTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNTNDKKPAEN 473
           K IQ+YLCSFKSQG+TV N+SATTFPQTLDWLHGYLLQ IE GISSVS+ ND+  A+N
Sbjct: 408 KIIQDYLCSFKSQGLTVANISATTFPQTLDWLHGYLLQSIEHGISSVSSENDRHQAQN 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539809|ref|XP_002510969.1| conserved hypothetical protein [Ricinus communis] gi|223550084|gb|EEF51571.1| conserved hypothetical protein [Ricinus communis]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 319/444 (71%), Positives = 363/444 (81%), Gaps = 19/444 (4%)

Query: 32  GSNSASGGEDSEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSR 91
            SNSA   E+  D+S   S   + ++ RN  SKYDFVKVKVWLGD+ADHYYV SRFLLSR
Sbjct: 20  ASNSA---EEDSDQSKNPSFPAVNISSRNASSKYDFVKVKVWLGDHADHYYVLSRFLLSR 76

Query: 92  MLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMM 151
           MLTVTKIPNHVAIKIALELKKLL+DNSLLDVSQ+DLEANLFKLMERRGYGEEYI+RY+MM
Sbjct: 77  MLTVTKIPNHVAIKIALELKKLLIDNSLLDVSQTDLEANLFKLMERRGYGEEYINRYKMM 136

Query: 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSP 211
           TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL+S+P
Sbjct: 137 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTP 196

Query: 212 VWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSK 271
           VWAR FSSSEEL+TEF RECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMD+++K
Sbjct: 197 VWAREFSSSEELITEFCRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEENK 256

Query: 272 APATTTEKTNSESVP---SDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQV 328
           + A   EK + E+ P   +D++P   +E    +V      +GN++     T G +S E+ 
Sbjct: 257 SSANMPEK-HKEATPLSQTDNDPEKHMEDIHKTV------SGNHNERSNHTHGDVSLEEG 309

Query: 329 NKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKA 388
           N    S + + L   +    G T  D   DRN SVKKEKSGPDPIIIPIVLKMA+FDHKA
Sbjct: 310 N----SGDQVNLQ--NCHESGNTAGDIKRDRNASVKKEKSGPDPIIIPIVLKMAEFDHKA 363

Query: 389 LLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLH 448
           LLEEWILT T+ +KC VQ+KD L++ LKTIQ YLCSFKSQG+TVVN+SATTFPQTLDWLH
Sbjct: 364 LLEEWILTRTYSEKCPVQDKDRLIANLKTIQGYLCSFKSQGLTVVNISATTFPQTLDWLH 423

Query: 449 GYLLQCIEKGISSVSNTNDKKPAE 472
           GYLLQCIE+GISSVS+   ++PAE
Sbjct: 424 GYLLQCIEQGISSVSSERGRQPAE 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461235|ref|XP_004148347.1| PREDICTED: uncharacterized protein LOC101206882 [Cucumis sativus]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/469 (67%), Positives = 368/469 (78%), Gaps = 9/469 (1%)

Query: 12  EVEEAADSIPNSKSNGNSSKGSNSASGGEDSEDKSSIFSLSHI---KLNCRNTVSKYDFV 68
           +V++ +  +PN + N   +        G  S+   ++   S     +L  RNT SKYDFV
Sbjct: 3   KVKDKSVPMPNPEINNTGTDEEAITDAGNSSQSNDNLKDWSTFPVARLPSRNTSSKYDFV 62

Query: 69  KVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLE 128
           KVKVWLGDNADHYYV SRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLE
Sbjct: 63  KVKVWLGDNADHYYVLSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLE 122

Query: 129 ANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188
           AN+FKLMERRGYGEEYI+RY+MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN
Sbjct: 123 ANIFKLMERRGYGEEYINRYKMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 182

Query: 189 VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKD 248
           VLQTDMVYELLRTSTDAPL+S+PVWAR+FSS EEL+TEF RECRIVRKGLAGDLKKAMKD
Sbjct: 183 VLQTDMVYELLRTSTDAPLTSTPVWARDFSSPEELITEFCRECRIVRKGLAGDLKKAMKD 242

Query: 249 GKPIIIEGIHLDPSIYLMDDDSKAPATTTEK---TNSESVPSDDNPVTQVESNSASVCVS 305
           GKPIIIEGIHLDPSIYLMDD+SK+PA  + K    N  S  S+D    Q+E   + + V 
Sbjct: 243 GKPIIIEGIHLDPSIYLMDDESKSPAKVSAKDIENNPLSATSEDKIARQME--RSCLVVH 300

Query: 306 DWENGNNSPEQPSTGGK-ISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVK 364
             + GN +  + S   + + + Q N+  DSLE++ +AG SS    ET      +R+ SV+
Sbjct: 301 QCKKGNGTCIKCSHSKECMHTNQENEGLDSLEAVGIAGNSSGITDETHNKEETNRSASVR 360

Query: 365 KEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCS 424
           KEKSG +PIIIPIVLKMA+FDHKALLEEWI   TF DKC +Q+K +L++ LKTIQ YLCS
Sbjct: 361 KEKSGAEPIIIPIVLKMAEFDHKALLEEWISPRTFSDKCPLQDKSKLIANLKTIQGYLCS 420

Query: 425 FKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNTNDKKPAEN 473
           FKSQG+ VVN+SATTFPQTLDWLHGY+LQCIE+GIS VSN N  +  E+
Sbjct: 421 FKSQGLIVVNISATTFPQTLDWLHGYILQCIEQGISPVSNENASQSIEH 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529869|ref|XP_003533509.1| PREDICTED: uncharacterized protein LOC100812099 [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/428 (70%), Positives = 353/428 (82%), Gaps = 9/428 (2%)

Query: 35  SASGGEDSEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLT 94
           S   GEDS+DK    +   ++ + RN  SKYDFVKVKVWLGDNADHYYV SRFLLSRMLT
Sbjct: 17  SPVSGEDSDDKQRP-AFPSVRFSSRNASSKYDFVKVKVWLGDNADHYYVLSRFLLSRMLT 75

Query: 95  VTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRF 154
           VTKIPNHVAIKIALELKKLL DNSLLDVSQSDLE NLFKLMERRGYGEEYI+RY+MMTRF
Sbjct: 76  VTKIPNHVAIKIALELKKLLTDNSLLDVSQSDLEVNLFKLMERRGYGEEYINRYKMMTRF 135

Query: 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWA 214
           HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL+S+PVWA
Sbjct: 136 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWA 195

Query: 215 RNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPA 274
           R+FSSSEEL+TEF RECR+VRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL+DDD+K+P+
Sbjct: 196 RDFSSSEELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLVDDDNKSPS 255

Query: 275 ---TTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKI 331
              +  ++ N   +  DDN   Q++ +  S   SD  NG +       G  +S++QV+ +
Sbjct: 256 GVHSENKEINPAFMTLDDNATAQIKDSHVS--SSDESNGGSRILSSDEG--VSADQVDAV 311

Query: 332 ADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLE 391
           ++S+ SI LA +  E+K  + ++   D+ T++ KEKSGP PII+PIVLKMA+FDHKALLE
Sbjct: 312 SNSMASIGLAESIPEHKVASLRELETDK-TTISKEKSGPKPIIVPIVLKMAEFDHKALLE 370

Query: 392 EWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYL 451
           EWI   TF DKC   + ++L++ LKTIQ+YLCSF SQG+TVVNVSATTFPQTLDWLHGYL
Sbjct: 371 EWISARTFNDKCPDLDNEKLIANLKTIQDYLCSFTSQGLTVVNVSATTFPQTLDWLHGYL 430

Query: 452 LQCIEKGI 459
           LQCIE+GI
Sbjct: 431 LQCIEQGI 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542495|ref|XP_003539702.1| PREDICTED: uncharacterized protein LOC100781886 [Glycine max]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/428 (70%), Positives = 350/428 (81%), Gaps = 9/428 (2%)

Query: 35  SASGGEDSEDKSSIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLT 94
           S   GEDS+DK    S   ++ + RN  SKYDFVKVKVWLGDNADHYYV SRFLLSRMLT
Sbjct: 15  SPVSGEDSDDKQRP-SFPSVRFSSRNASSKYDFVKVKVWLGDNADHYYVLSRFLLSRMLT 73

Query: 95  VTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRF 154
           VTKIPNHVAIKIALELKKLL DNSLLDVSQSDLE NLFKLMERRGYGEEYI+RY+MMTRF
Sbjct: 74  VTKIPNHVAIKIALELKKLLTDNSLLDVSQSDLEVNLFKLMERRGYGEEYINRYKMMTRF 133

Query: 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWA 214
           HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL+S+PVWA
Sbjct: 134 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLASTPVWA 193

Query: 215 RNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPA 274
           R+FSSSEEL+TEF RECR+VRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL+DDD+K+P+
Sbjct: 194 RDFSSSEELITEFCRECRVVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLVDDDNKSPS 253

Query: 275 ---TTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKI 331
              +  ++ N   +  DDN   Q++     V  SD  NG +       G  +S++QV+ +
Sbjct: 254 GVHSENKEINPAFMTLDDNATAQIK--DIHVGSSDESNGGSRILSSDEG--VSADQVDVV 309

Query: 332 ADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLE 391
           ++S+ S+ L  +  E+K  + ++   D+ T++ + KSGP PII+PIVLKMA+FDHKALLE
Sbjct: 310 SNSMASMGLTESIPEHKVASLRELETDK-TTISRAKSGPKPIIVPIVLKMAEFDHKALLE 368

Query: 392 EWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYL 451
           EWI   TF DKC   + ++L++ LKTIQ+YLCSF SQG+TVVNVSATTFPQTLDWLHGYL
Sbjct: 369 EWISARTFNDKCPDLDNEKLIANLKTIQDYLCSFTSQGLTVVNVSATTFPQTLDWLHGYL 428

Query: 452 LQCIEKGI 459
           LQCIE+GI
Sbjct: 429 LQCIEQGI 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071515|ref|XP_002303497.1| predicted protein [Populus trichocarpa] gi|222840929|gb|EEE78476.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 303/403 (75%), Positives = 336/403 (83%), Gaps = 19/403 (4%)

Query: 59  RNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNS 118
           RN  SKYDFVKVKVWLG+NADH YV SRFLLSRMLTVTKIPNHVAIKIALELKKLL+DNS
Sbjct: 6   RNASSKYDFVKVKVWLGENADHCYVLSRFLLSRMLTVTKIPNHVAIKIALELKKLLIDNS 65

Query: 119 LLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIAT 178
           LLDVSQSDLEANLFKLMERRGYGEEYI+ Y+MMTRFH+QRVPLVILVCGTACVGKSTIAT
Sbjct: 66  LLDVSQSDLEANLFKLMERRGYGEEYINHYKMMTRFHYQRVPLVILVCGTACVGKSTIAT 125

Query: 179 QLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL 238
           QLAQRLNLPNVLQTDMVYELLRTSTDAPL S+PVWAR FSSSEEL+TEF RECRIVRKGL
Sbjct: 126 QLAQRLNLPNVLQTDMVYELLRTSTDAPLVSTPVWAREFSSSEELITEFCRECRIVRKGL 185

Query: 239 AGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEK--TNSESVPSDDNPVTQVE 296
           AGDLKKAMKDGKPIIIEGIHLDPSIYLMD+++K PA   EK  TN+ SV  DD+P  Q+E
Sbjct: 186 AGDLKKAMKDGKPIIIEGIHLDPSIYLMDEENKLPAKMPEKSETNTVSVSLDDDPARQLE 245

Query: 297 SNSASVCVSDWENGNNSPEQPSTGGKISSEQ------VNKIADSLESIVLAGTSSENKGE 350
           +NS S         NN+     T G ++SE+      VNK+ DS ESI  AG+ S++  E
Sbjct: 246 NNSVS--------ENNTENSNCTTGYLTSEEGKSVNLVNKVVDSQESIDKAGSISDS--E 295

Query: 351 TPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDE 410
           T KD   DR TSV   KSGP+PIIIPIVLKMA+FDHKALLEEWI T +F DKC  ++KD+
Sbjct: 296 TIKDLEGDRKTSVSL-KSGPEPIIIPIVLKMAEFDHKALLEEWISTRSFSDKCPAEDKDK 354

Query: 411 LVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQ 453
            ++ LK IQ+YL SFKSQG+TV N+SATTFPQTLDWLHGYLLQ
Sbjct: 355 SITNLKIIQDYLISFKSQGLTVANISATTFPQTLDWLHGYLLQ 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121048|ref|XP_003562234.1| PREDICTED: uncharacterized protein LOC100838264 [Brachypodium distachyon]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/423 (66%), Positives = 334/423 (78%), Gaps = 9/423 (2%)

Query: 55  KLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLL 114
           +L  RN  SKYDFVKVKVWLG+NADHYYV SRFLLSRMLTVTKIPNHVAIKIALELKKLL
Sbjct: 34  RLPSRNASSKYDFVKVKVWLGENADHYYVLSRFLLSRMLTVTKIPNHVAIKIALELKKLL 93

Query: 115 VDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKS 174
           VDNSLLDVSQSDLEANLFKLME+RGYGE+YISRY+MMTRFHHQRVPLVILVCGTAC GKS
Sbjct: 94  VDNSLLDVSQSDLEANLFKLMEKRGYGEDYISRYKMMTRFHHQRVPLVILVCGTACTGKS 153

Query: 175 TIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIV 234
           TIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL+S PVWAR+F+S EEL+TEF RECR+V
Sbjct: 154 TIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLTSVPVWARDFNSPEELITEFCRECRVV 213

Query: 235 RKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEK---TNSESVPSDDNP 291
           RKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMD+++    +  EK   +++ +V  ++  
Sbjct: 214 RKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDEENADANSRMEKKAESDNSAVSVENKI 273

Query: 292 VTQVES----NSASVCVSDWENGNN-SPEQPSTGGKISSEQVNKIADSLESIVLAGTSSE 346
             Q E+    N  SV   D   G+   PE+  T   +S    + I+ S E+      + +
Sbjct: 274 EHQFENGLSENRISVTNEDIAEGHKFKPEESRTNEGLSGADSHGISSS-EARDSKEKNPK 332

Query: 347 NKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQ 406
            +G   KD    +NT+ KK+K   +PII+PIVL+M+DFDHKALLEEWI T    D CL Q
Sbjct: 333 AEGNGHKDLDQQKNTTTKKDKPAAEPIIVPIVLRMSDFDHKALLEEWIATRALRDNCLPQ 392

Query: 407 NKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNTN 466
           +  +L++ LK IQ+YLCSF+SQG+TVV++SA +FPQTLDWLHGYLLQCIE+G+ +  + N
Sbjct: 393 DHRKLINNLKLIQDYLCSFESQGLTVVDISANSFPQTLDWLHGYLLQCIERGLLAACSEN 452

Query: 467 DKK 469
            K+
Sbjct: 453 PKQ 455

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240256|ref|NP_200953.1| 2-phosphoglycerate kinase-related protein [Arabidopsis thaliana] gi|10177175|dbj|BAB10444.1| unnamed protein product [Arabidopsis thaliana] gi|332010087|gb|AED97470.1| 2-phosphoglycerate kinase-related protein [Arabidopsis thaliana]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/466 (62%), Positives = 349/466 (74%), Gaps = 33/466 (7%)

Query: 8   KNTEEVEEAADSIPNSKSNGNSSKGSNSASGGEDSEDKSSIFSLSHIKLNCRNTVSKYDF 67
           K+ EE   ++ S+   K+NG         + GE      +I S S +  + RN  SKYDF
Sbjct: 2   KDREESSSSSSSMTTKKTNG-------IINNGEHEPRDINIRSFSSVPSSPRNASSKYDF 54

Query: 68  VKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDL 127
           VKVKVWLGDNADHYYV SRFL+ RMLTVTKIPNH AIKI+LELKKLL+DNSLLDVSQSDL
Sbjct: 55  VKVKVWLGDNADHYYVLSRFLVCRMLTVTKIPNHEAIKISLELKKLLIDNSLLDVSQSDL 114

Query: 128 EANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187
           E NLFKLMERRGYGEEYI+RY MMT+FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP
Sbjct: 115 ETNLFKLMERRGYGEEYINRYNMMTKFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 174

Query: 188 NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMK 247
           NVLQTDMVYELLRT+TDAPL+S+PVW R F SSEEL+TEF RECRIVRKGL GDLKKAMK
Sbjct: 175 NVLQTDMVYELLRTATDAPLTSTPVWTREFGSSEELITEFCRECRIVRKGLGGDLKKAMK 234

Query: 248 DGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSES-----VPSDDNPVTQVESNSASV 302
           DGKPIIIEG HLDPSIYLM+D++K P+   EK++SE+     + SD NP    E++S++ 
Sbjct: 235 DGKPIIIEGRHLDPSIYLMNDENKTPSNDPEKSSSETNSSKDLTSDKNP----EASSSNT 290

Query: 303 CVSDWENGNNSPEQPSTGGK-ISSEQVNKIADSLESIVLAGTSS---ENKGETPKDPGVD 358
             +D     NS  +P +  + ++S + N +++ +    +   SS   E K ++    G  
Sbjct: 291 KETD-----NSAVKPHSHEEAVASVEANNLSEKVTQCTIDAESSKDAEKKSKSADGSG-- 343

Query: 359 RNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTI 418
                 K KSGP+PI+I IVLKM++FDHKALLEEWI + T G+K   + KD L++ LKTI
Sbjct: 344 ------KTKSGPEPIVISIVLKMSEFDHKALLEEWISSRTSGEKYTTKEKDRLITNLKTI 397

Query: 419 QNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSN 464
           ++YLCSF SQGVTVVN+SATTFPQTLDWLH YLLQ IE+GI S  N
Sbjct: 398 EDYLCSFNSQGVTVVNISATTFPQTLDWLHNYLLQRIEEGIRSSEN 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
TAIR|locus:2163183	447	AT5G61450 "AT5G61450" [Arabido	0.873	0.923	0.643	4.6e-137
TAIR|locus:2096865	717	AT3G45090 [Arabidopsis thalian	0.213	0.140	0.278	1.9e-07
TAIR|locus:2159270	738	AT5G60760 "AT5G60760" [Arabido	0.213	0.136	0.269	4.5e-07

TAIR|locus:2163183 AT5G61450 "AT5G61450" [Arabidopsis thaliana (taxid:3702)]

 Score = 1342 (477.5 bits), Expect = 4.6e-137, P = 4.6e-137
 Identities = 272/423 (64%), Positives = 321/423 (75%)

Query:    47 SIFSLSHIKLNCRNTVSKYDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVXXXX 106
             +I S S +  + RN  SKYDFVKVKVWLGDNADHYYV SRFL+ RMLTVTKIPNH     
Sbjct:    34 NIRSFSSVPSSPRNASSKYDFVKVKVWLGDNADHYYVLSRFLVCRMLTVTKIPNHEAIKI 93

Query:   107 XXXXXXXXVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166
                     +DNSLLDVSQSDLE NLFKLMERRGYGEEYI+RY MMT+FHHQRVPLVILVC
Sbjct:    94 SLELKKLLIDNSLLDVSQSDLETNLFKLMERRGYGEEYINRYNMMTKFHHQRVPLVILVC 153

Query:   167 GTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTE 226
             GTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT+TDAPL+S+PVW R F SSEEL+TE
Sbjct:   154 GTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTATDAPLTSTPVWTREFGSSEELITE 213

Query:   227 FVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVP 286
             F RECRIVRKGL GDLKKAMKDGKPIIIEG HLDPSIYLM+D++K P+   EK++SE+  
Sbjct:   214 FCRECRIVRKGLGGDLKKAMKDGKPIIIEGRHLDPSIYLMNDENKTPSNDPEKSSSETNS 273

Query:   287 SDDNPVTQVESNSASVCVSDWENGNNSPEQPSTGGK-ISSEQVNKIADSLESIVLAGTSS 345
             S D  +T  ++  AS   S+ +  +NS  +P +  + ++S + N +++ +    +   SS
Sbjct:   274 SKD--LTSDKNPEASS--SNTKETDNSAVKPHSHEEAVASVEANNLSEKVTQCTIDAESS 329

Query:   346 ENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTHTFGDKCLV 405
               K    K    D +    K KSGP+PI+I IVLKM++FDHKALLEEWI + T G+K   
Sbjct:   330 --KDAEKKSKSADGSG---KTKSGPEPIVISIVLKMSEFDHKALLEEWISSRTSGEKYTT 384

Query:   406 QNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGISSVSNT 465
             + KD L++ LKTI++YLCSF SQGVTVVN+SATTFPQTLDWLH YLLQ IE+GI S  N 
Sbjct:   385 KEKDRLITNLKTIEDYLCSFNSQGVTVVNISATTFPQTLDWLHNYLLQRIEEGIRSSENE 444

Query:   466 NDK 468
               K
Sbjct:   445 APK 447

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096865 AT3G45090 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 29/104 (27%), Positives = 52/104 (50%)

Query:   134 LMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193
             L E +  G +  +   +  R   ++  + +L+CGT+  GKST++  L  RL +  V+ TD
Sbjct:   132 LAEYKYVGRDQRADLILACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVVSTD 191

Query:   194 MVYELLRTSTDAPLSSSPV-WARNFSSSEELVTEFVRECRIVRK 236
              +  ++R+  D     +P+ WA  + + E L    V E +  RK
Sbjct:   192 SIRHMMRSFADE--KQNPLLWASTYHAGEYLDPVAVAESKAKRK 233

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2159270 AT5G60760 "AT5G60760" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
 Identities = 28/104 (26%), Positives = 52/104 (50%)

Query:   134 LMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193
             L E +  G +  +   +  R   ++  + +L+CGT+  GKST++  L  RL +  V+ TD
Sbjct:   146 LAEYKYVGHDQRADLILSCRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVVSTD 205

Query:   194 MVYELLRTSTDAPLSSSPV-WARNFSSSEELVTEFVRECRIVRK 236
              +  ++R+  D     +P+ WA  + + E L    V E +  R+
Sbjct:   206 SIRHMMRSFVDE--KQNPLLWASTYHAGEYLDPVAVAESKARRR 247

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
COG2074	299	COG2074, COG2074, 2-phosphoglycerate kinase [Carbo	7e-27
PRK04220	301	PRK04220, PRK04220, 2-phosphoglycerate kinase; Pro	5e-26
PRK12337	475	PRK12337, PRK12337, 2-phosphoglycerate kinase; Pro	7e-16
PRK12338	319	PRK12338, PRK12338, hypothetical protein; Provisio	9e-11
PRK12339	197	PRK12339, PRK12339, 2-phosphoglycerate kinase; Pro	7e-10
pfam13207	114	pfam13207, AAA_17, AAA domain	2e-07
pfam13238	128	pfam13238, AAA_18, AAA domain	6e-05
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	3e-04

>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

 Score =  109 bits (274), Expect = 7e-27
 Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 10/186 (5%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FS+ +L+R LT   +   +A  IA+E+++ L    +  V++ ++     KL+E+     E
Sbjct: 15  FSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIREVYQKLLEKGD--PE 72

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR--- 200
              RY +  R    + PL+IL+ G + VGKSTIA +LA+RL + +V+ TD + E+LR   
Sbjct: 73  VAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKII 132

Query: 201 TSTDAPL---SSSPVWA--RNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIE 255
           +    P    SS   W   R+ +    ++  F  +   V  G+   +++A+++G+ +IIE
Sbjct: 133 SPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIE 192

Query: 256 GIHLDP 261
           G+HL P
Sbjct: 193 GVHLVP 198

Length = 299

>gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional

 Score =  107 bits (269), Expect = 5e-26
 Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 10/189 (5%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FS+ +L+R LT   +   +A +IA E+++ L    + ++++ +L   ++  +  + Y EE
Sbjct: 17  FSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDY-EE 75

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
              +Y +  R    + P++IL+ G + VG STIA +LA RL + +V+ TD + E++R   
Sbjct: 76  VAEKYLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKII 135

Query: 204 DAPL------SSSPVWA---RNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIII 254
              L      SS   W    R       ++  F R    V  G+   +++A+K+G  +II
Sbjct: 136 SKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVEPVSVGVEAVIERALKEGISVII 195

Query: 255 EGIHLDPSI 263
           EG+H+ P  
Sbjct: 196 EGVHIVPGF 204

Length = 301

>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 84  FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE 143
           FS+ +L++ L    +   VA ++A E ++ L  +    V +  L   +  L+     GEE
Sbjct: 180 FSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALL-LEEAGEE 238

Query: 144 YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTST 203
              RYR++        PL +L+ G + VGKS +A+ LA RL +  ++ TD V E+LR   
Sbjct: 239 VARRYRLLRSIRRPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMV 298

Query: 204 DAPL------SSSPVWARNFSSSE---------ELVTEFVRECRIVRKGLAGDLKKAMKD 248
              L      S+   W       E         E++  F  + + V  GL    +++ ++
Sbjct: 299 SKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQE 358

Query: 249 GKPIIIEGIHLDP 261
           G  +++EG+HL P
Sbjct: 359 GTSLVLEGVHLVP 371

Length = 475

>gnl|CDD|237066 PRK12338, PRK12338, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 12/116 (10%)

Query: 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTD---AP-LSSSPVW 213
           R P VIL+   + +GKSTIA++LA+ LN+ ++++TD + E++R       AP L  S   
Sbjct: 2   RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYN 61

Query: 214 A-------RNFSSSEELVTE-FVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDP 261
           A        NF ++EEL+   F      V   +   +++A+ D   I+IEG+HL P
Sbjct: 62  AYTALRDKENFKNNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVP 117

Length = 319

>gnl|CDD|105560 PRK12339, PRK12339, 2-phosphoglycerate kinase; Provisional

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 27/113 (23%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT-STDAPLSSSPVW-ARNF-- 217
           +  + G   VGK++I+  +A+   +  VL  D + E LR    D P+ +  V+ A  F  
Sbjct: 5   IHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYG 64

Query: 218 -SSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDD 269
             + E +V  ++ + R +  G+   +++A+ +G+ ++IE ++  P +  +D++
Sbjct: 65  SMTDENIVKGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPM--IDEN 115

Length = 197

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSE 221
           +IL+ G    GKST+A +LA++L +P +   D++ E      D                E
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLEL--LE 58

Query: 222 ELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIY 264
           E++ E  ++  ++       L+  +++   ++   + L    +
Sbjct: 59  EILDELAKQEWVIDGVRESTLELRLEEADLVVFLDLPLPACRF 101

Length = 114

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 29/113 (25%)

Query: 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEE 222
           IL+ GT   GK+T+A +LA+RL        D++ +L +                     E
Sbjct: 1   ILITGTPGSGKTTLAKELAERLG-------DVLRDLAKE-------------NGL--VLE 38

Query: 223 LVTEFVRECRIVRKGLAGDLKKAMK-------DGKPIIIEGIHLDPSIYLMDD 268
           L  E   E + + +     L   ++       +G+ +II+G   +  +    D
Sbjct: 39  LDEEITDESKRLDEDKLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKD 91

Length = 128

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD-M-VYELLRTSTDAP----LSSSP 211
           + P +I++ G    GK+ +A  LA+RL    ++  D M VY  L   T  P    L+  P
Sbjct: 1   KKPKLIVIAGPTASGKTALAIALAKRLGGE-IISLDSMQVYRGLDIGTAKPSLEELAGVP 59

Query: 212 -------VWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEG 256
                      ++S       EF R+           +   +  GK  I+ G
Sbjct: 60  HHLIDIRDPTESYS-----AAEFQRDAL-------AAIDDILARGKLPILVG 99

Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
PRK04220	301	2-phosphoglycerate kinase; Provisional	100.0
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	100.0
PRK12337	475	2-phosphoglycerate kinase; Provisional	100.0
PRK12338	319	hypothetical protein; Provisional	99.93
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.9
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.92
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.85
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.84
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.79
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.77
PRK14531	183	adenylate kinase; Provisional	98.73
PRK14974	336	cell division protein FtsY; Provisional	98.66
PLN02200	234	adenylate kinase family protein	98.64
COG0645	170	Predicted kinase [General function prediction only	98.63
PRK06762	166	hypothetical protein; Provisional	98.63
PLN02674	244	adenylate kinase	98.61
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.6
PRK14532	188	adenylate kinase; Provisional	98.6
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.6
PTZ00088	229	adenylate kinase 1; Provisional	98.59
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.58
PRK14527	191	adenylate kinase; Provisional	98.57
PHA02530	300	pseT polynucleotide kinase; Provisional	98.56
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.53
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.53
PRK00279	215	adk adenylate kinase; Reviewed	98.49
PRK14530	215	adenylate kinase; Provisional	98.48
PLN02459	261	probable adenylate kinase	98.48
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.46
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.45
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.44
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.38
PRK03839	180	putative kinase; Provisional	98.36
PRK04040	188	adenylate kinase; Provisional	98.36
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.35
PRK04182	180	cytidylate kinase; Provisional	98.35
PRK13808	333	adenylate kinase; Provisional	98.35
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.34
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.33
PRK02496	184	adk adenylate kinase; Provisional	98.32
PRK14529	223	adenylate kinase; Provisional	98.31
PRK06217	183	hypothetical protein; Validated	98.29
PRK07261	171	topology modulation protein; Provisional	98.28
PRK14528	186	adenylate kinase; Provisional	98.26
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.26
PRK14526	211	adenylate kinase; Provisional	98.26
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.23
PRK01184	184	hypothetical protein; Provisional	98.23
PRK10867	433	signal recognition particle protein; Provisional	98.21
PRK08118	167	topology modulation protein; Reviewed	98.21
PRK00131	175	aroK shikimate kinase; Reviewed	98.19
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.19
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.17
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.17
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.17
PRK13948	182	shikimate kinase; Provisional	98.17
PRK00625	173	shikimate kinase; Provisional	98.16
PRK10416	318	signal recognition particle-docking protein FtsY;	98.15
PRK13946	184	shikimate kinase; Provisional	98.15
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.12
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.12
TIGR00959	428	ffh signal recognition particle protein. This mode	98.11
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.11
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.1
PRK08233	182	hypothetical protein; Provisional	98.09
PRK13947	171	shikimate kinase; Provisional	98.08
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.07
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.07
PRK08356	195	hypothetical protein; Provisional	98.06
PRK05541	176	adenylylsulfate kinase; Provisional	98.03
KOG0781	587	consensus Signal recognition particle receptor, al	98.01
PRK13949	169	shikimate kinase; Provisional	97.99
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.97
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.96
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.96
PLN02748	468	tRNA dimethylallyltransferase	97.95
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.91
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.89
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.89
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	97.87
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.87
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.86
PRK03731	171	aroL shikimate kinase II; Reviewed	97.86
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.83
PRK06547	172	hypothetical protein; Provisional	97.78
PRK05057	172	aroK shikimate kinase I; Reviewed	97.78
COG4639	168	Predicted kinase [General function prediction only	97.76
PRK00889	175	adenylylsulfate kinase; Provisional	97.76
PRK06696	223	uridine kinase; Validated	97.7
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.69
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.68
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.68
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.67
PLN02840	421	tRNA dimethylallyltransferase	97.65
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.63
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.62
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.62
PLN02199	303	shikimate kinase	97.62
PLN02165	334	adenylate isopentenyltransferase	97.61
PF00004	132	AAA: ATPase family associated with various cellula	97.53
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.5
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.47
PRK13973	213	thymidylate kinase; Provisional	97.46
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.45
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.44
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.44
PRK03846	198	adenylylsulfate kinase; Provisional	97.43
PLN02842	505	nucleotide kinase	97.42
PRK00023	225	cmk cytidylate kinase; Provisional	97.42
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.42
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.41
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.41
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.41
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.4
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.37
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.36
PRK05480	209	uridine/cytidine kinase; Provisional	97.34
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.33
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.33
PRK05439	311	pantothenate kinase; Provisional	97.31
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.31
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.3
smart00382	148	AAA ATPases associated with a variety of cellular	97.29
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.26
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.26
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.24
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.23
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.22
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.22
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.2
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.19
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.18
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.18
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.16
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.16
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.15
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.15
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.15
PRK00300	205	gmk guanylate kinase; Provisional	97.14
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.13
PRK14737	186	gmk guanylate kinase; Provisional	97.12
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.1
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.1
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.09
PRK11545	163	gntK gluconate kinase 1; Provisional	97.05
PRK00698	205	tmk thymidylate kinase; Validated	97.05
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.04
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.04
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.02
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.02
PRK13975	196	thymidylate kinase; Provisional	97.0
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.96
PTZ00301	210	uridine kinase; Provisional	96.95
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	96.92
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	96.92
PRK07667	193	uridine kinase; Provisional	96.92
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.89
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.89
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.88
PRK14734	200	coaE dephospho-CoA kinase; Provisional	96.88
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.88
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	96.85
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.85
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.84
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	96.84
PLN02348	395	phosphoribulokinase	96.84
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.83
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	96.83
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.83
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.82
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.82
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.82
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.81
CHL00195	489	ycf46 Ycf46; Provisional	96.8
PRK15453	290	phosphoribulokinase; Provisional	96.79
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.7
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.67
PRK09825	176	idnK D-gluconate kinase; Provisional	96.65
PRK14738	206	gmk guanylate kinase; Provisional	96.62
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.61
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.6
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.59
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.56
PLN02422	232	dephospho-CoA kinase	96.52
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.52
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.51
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.5
PHA00729	226	NTP-binding motif containing protein	96.5
CHL00181	287	cbbX CbbX; Provisional	96.49
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.49
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.48
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.46
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.46
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.45
PRK07429	327	phosphoribulokinase; Provisional	96.44
PLN02924	220	thymidylate kinase	96.43
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.42
PRK04195	482	replication factor C large subunit; Provisional	96.4
PTZ00451	244	dephospho-CoA kinase; Provisional	96.4
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.37
PRK15455	644	PrkA family serine protein kinase; Provisional	96.36
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.34
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.34
PRK06620	214	hypothetical protein; Validated	96.33
PRK13342	413	recombination factor protein RarA; Reviewed	96.32
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.31
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.31
PRK09087	226	hypothetical protein; Validated	96.27
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	96.27
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.26
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.25
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.24
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.24
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.24
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.24
PRK06761	282	hypothetical protein; Provisional	96.23
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.23
PRK14732	196	coaE dephospho-CoA kinase; Provisional	96.22
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.21
PF05729	166	NACHT: NACHT domain	96.21
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	96.19
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.19
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.18
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	96.16
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.14
PLN03046	460	D-glycerate 3-kinase; Provisional	96.14
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.13
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.09
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.09
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.08
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.08
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	96.08
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.08
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.07
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.04
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.02
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.99
PHA02544	316	44 clamp loader, small subunit; Provisional	95.99
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.98
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.96
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	95.93
PLN02796	347	D-glycerate 3-kinase	95.92
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	95.91
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.9
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.89
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.89
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	95.89
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.89
PRK12402	337	replication factor C small subunit 2; Reviewed	95.86
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	95.86
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.86
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	95.85
COG4240	300	Predicted kinase [General function prediction only	95.84
PRK06921	266	hypothetical protein; Provisional	95.83
PLN02318	656	phosphoribulokinase/uridine kinase	95.82
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.81
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.8
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	95.8
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	95.79
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.77
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	95.76
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.76
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.76
KOG3062	281	consensus RNA polymerase II elongator associated p	95.75
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	95.75
PRK08116	268	hypothetical protein; Validated	95.75
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	95.74
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.73
PHA02244	383	ATPase-like protein	95.73
PRK07933	213	thymidylate kinase; Validated	95.71
PLN03025	319	replication factor C subunit; Provisional	95.7
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.7
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.69
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.68
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	95.67
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	95.66
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	95.65
PRK12377	248	putative replication protein; Provisional	95.65
PRK08084	235	DNA replication initiation factor; Provisional	95.62
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.62
CHL00176	638	ftsH cell division protein; Validated	95.61
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.6
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.59
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	95.58
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	95.57
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.55
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.54
PRK06526	254	transposase; Provisional	95.54
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.53
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.52
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.52
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	95.49
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.49
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.49
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.48
PF07726	131	AAA_3: ATPase family associated with various cellu	95.48
KOG3308	225	consensus Uncharacterized protein of the uridine k	95.47
PF13479	213	AAA_24: AAA domain	95.46
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	95.43
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.43
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.41
PRK13976	209	thymidylate kinase; Provisional	95.37
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.35
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.31
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	95.31
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.28
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.27
PF13173	128	AAA_14: AAA domain	95.24
PTZ00202	550	tuzin; Provisional	95.23
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.22
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	95.22
PF13245	76	AAA_19: Part of AAA domain	95.21
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	95.2
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	95.19
PRK13341	725	recombination factor protein RarA/unknown domain f	95.17
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.17
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	95.16
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.15
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	95.15
PRK06835	329	DNA replication protein DnaC; Validated	95.11
PRK09183	259	transposase/IS protein; Provisional	95.06
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.06
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	95.04
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.02
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.01
PRK08939	306	primosomal protein DnaI; Reviewed	94.99
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	94.99
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	94.97
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.96
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	94.96
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.95
PRK07952	244	DNA replication protein DnaC; Validated	94.93
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	94.93
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.93
CHL00095	821	clpC Clp protease ATP binding subunit	94.89
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	94.88
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	94.88
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	94.87
PRK13695	174	putative NTPase; Provisional	94.85
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	94.84
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.84
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.8
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.78
PRK09112	351	DNA polymerase III subunit delta'; Validated	94.78
PRK13768	253	GTPase; Provisional	94.77
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.73
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	94.73
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	94.72
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	94.7
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.69
COG0714	329	MoxR-like ATPases [General function prediction onl	94.69
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	94.68
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	94.65
PRK05973	237	replicative DNA helicase; Provisional	94.64
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	94.63
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.62
PRK08181	269	transposase; Validated	94.6
COG1855	604	ATPase (PilT family) [General function prediction	94.59
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	94.59
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.58
PRK10865	857	protein disaggregation chaperone; Provisional	94.54
PRK00440	319	rfc replication factor C small subunit; Reviewed	94.54
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	94.53
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	94.52
PRK06893	229	DNA replication initiation factor; Validated	94.5
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.49
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.48
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	94.47
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	94.47
cd01394	218	radB RadB. The archaeal protein radB shares simila	94.46
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	94.43
COG1162	301	Predicted GTPases [General function prediction onl	94.42
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	94.4
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	94.38
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.36
PHA02624	647	large T antigen; Provisional	94.36
COG1484	254	DnaC DNA replication protein [DNA replication, rec	94.35
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	94.34
PRK07940	394	DNA polymerase III subunit delta'; Validated	94.33
PRK04296	190	thymidine kinase; Provisional	94.31
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.3
PRK07471	365	DNA polymerase III subunit delta'; Validated	94.3
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.3
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.29
PF03477	90	ATP-cone: ATP cone domain; InterPro: IPR005144 The	94.25
KOG2028	554	consensus ATPase related to the helicase subunit o	94.23
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.22
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.21
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	94.17
TIGR02237	209	recomb_radB DNA repair and recombination protein R	94.15
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.11
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.08
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.08
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.07
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.07
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.07
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	94.05
cd03116	159	MobB Molybdenum is an essential trace element in t	94.03
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	94.03
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	94.01
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.98
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	93.96
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.96
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.93
PRK05564	313	DNA polymerase III subunit delta'; Validated	93.92
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.92
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.89
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.87
PRK06851	367	hypothetical protein; Provisional	93.87
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.87
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.87
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.85
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	93.85
PRK12608	380	transcription termination factor Rho; Provisional	93.84
PF07475	171	Hpr_kinase_C: HPr Serine kinase C-terminal domain;	93.84
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	93.83
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	93.81
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.8
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	93.79
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.79
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	93.77
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	93.75
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	93.74
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.74
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	93.73
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	93.73
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.73
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	93.72
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	93.72
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	93.71
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	93.7
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	93.7
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	93.69
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	93.69
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	93.67
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	93.67
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	93.67
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	93.66
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	93.66
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.66
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	93.65
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	93.64
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	93.63
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	93.62
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	93.62
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	93.62
PRK13764	602	ATPase; Provisional	93.6
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	93.6
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	93.6
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	93.58
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	93.58
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	93.58
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	93.57
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	93.57
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	93.56
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	93.54
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	93.52
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.51
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.5
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	93.49
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.48
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	93.47
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	93.47
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	93.47
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	93.46
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	93.45
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	93.44
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	93.44
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	93.44
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	93.4
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	93.4
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	93.4
CHL00206	2281	ycf2 Ycf2; Provisional	93.39
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	93.39
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	93.39
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.39
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	93.39
PRK13531	498	regulatory ATPase RavA; Provisional	93.38
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	93.37
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	93.34
PRK10646	153	ADP-binding protein; Provisional	93.33
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	93.33
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	93.32
PRK10908	222	cell division protein FtsE; Provisional	93.31
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	93.3
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	93.3
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	93.29
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	93.27
PRK13974	212	thymidylate kinase; Provisional	93.27
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	93.26
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	93.23
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.23
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	93.23
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	93.21
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	93.21
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	93.2
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	93.18
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	93.18
cd03234	226	ABCG_White The White subfamily represents ABC tran	93.17

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=100.00  E-value=3.6e-43  Score=352.74  Aligned_cols=282  Identities=24%  Similarity=0.382  Sum_probs=241.4

Q ss_pred             eEEEEEeccCCCccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHH
Q 011994           68 VKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISR  147 (473)
Q Consensus        68 vkvkV~l~~~~~h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~r  147 (473)
                      ++|.|.-+   +..+|||||||+|+|+.+|+++++||+||.++++.|++.++..+++++|++.|++.|.+.+|.. .+.+
T Consensus         4 ~~i~v~~~---~~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~-~~~~   79 (301)
T PRK04220          4 IRIIVKGK---KYEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEE-VAEK   79 (301)
T ss_pred             eEEEEcCC---CccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHh-HHHH
Confidence            45666665   5679999999999999999999999999999999999999999999999999999999976654 6888


Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCccccc--cccC
Q 011994          148 YRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR--NFSS  219 (473)
Q Consensus       148 Y~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~--~y~s  219 (473)
                      |++|++++..++|++|+|+|++||||||+|..||.+||+++|+++|++|+.||...+.++      +.+.+|..  ..++
T Consensus        80 y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~  159 (301)
T PRK04220         80 YLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPP  159 (301)
T ss_pred             HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCC
Confidence            999999999999999999999999999999999999999999999999999998664332      23455652  1233


Q ss_pred             hHH-HHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccC
Q 011994          220 SEE-LVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESN  298 (473)
Q Consensus       220 ~Ee-lI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~  298 (473)
                      .++ .+.+|..||+.|..|+.++|++++.+|.++||||+|+.|++...  +                             
T Consensus       160 ~~~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~--~-----------------------------  208 (301)
T PRK04220        160 PEPPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE--K-----------------------------  208 (301)
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH--h-----------------------------
Confidence            444 89999999999999999999999999999999999999998522  0                             


Q ss_pred             cccccccccCCCCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEE
Q 011994          299 SASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIV  378 (473)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~v  378 (473)
                                                                                           ....|.+|||+
T Consensus       209 ---------------------------------------------------------------------~~~~~~~i~~~  219 (301)
T PRK04220        209 ---------------------------------------------------------------------YLENPNVFMFV  219 (301)
T ss_pred             ---------------------------------------------------------------------hhcCCCEEEEE
Confidence                                                                                 11245689999


Q ss_pred             EEecch-hhHHHHHHhhhhhcccccccccch-HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHHH
Q 011994          379 LKMADF-DHKALLEEWILTHTFGDKCLVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIE  456 (473)
Q Consensus       379 l~~~~~-dh~~lle~~~~~ra~~~~~~~~~~-~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~  456 (473)
                      |+++++ .|+    +.|..|+.+++ .+.++ .+.|.++++||||||..+. .+.++-|+++++++|+|.+|.++.+|++
T Consensus       220 l~i~~ee~h~----~RF~~R~~~~~-r~~~~y~~~~~~ir~iq~~l~~~a~-~~~ip~I~n~~i~~s~~~~~~~i~~~~~  293 (301)
T PRK04220        220 LTLSDEEAHK----ARFYARARVSR-RPAERYLKNFEIIREINDYIVEKAK-KHGVPVIENISIEETVDKILEIITERLS  293 (301)
T ss_pred             EEECCHHHHH----HHHHHHHhhhC-CchhhHHHHHHHHHHHHHHHHHHHH-HhCCCeecCccHHHHHHHHHHHHHHHHH
Confidence            998886 666    66788999883 33333 3899999999999999875 6778889999999999999999999997


Q ss_pred             Hhh
Q 011994          457 KGI  459 (473)
Q Consensus       457 ~~~  459 (473)
                      ...
T Consensus       294 ~~~  296 (301)
T PRK04220        294 KII  296 (301)
T ss_pred             HHH
Confidence            654

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-41  Score=333.32  Aligned_cols=274  Identities=27%  Similarity=0.410  Sum_probs=232.7

Q ss_pred             Ccc-ccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhcc
Q 011994           79 DHY-YVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQ  157 (473)
Q Consensus        79 ~h~-ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~  157 (473)
                      ++| .|||||||.|+|+++|++|+.||+||.+++.+|.+.+...|+.++|++ ++..|.+.++.+ .+++|.||++|+..
T Consensus         9 ~~~~~PFSkGiL~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e-~a~rY~lwR~ir~~   86 (299)
T COG2074           9 DKYEMPFSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPE-VAKRYLLWRRIRKM   86 (299)
T ss_pred             CcccCCcchhHHHHHHHhcccChhHHHHHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHH-HHHHHHHHHHHhcc
Confidence            566 999999999999999999999999999999999999999999999999 666555545555 69999999999999


Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCcccccc-ccChH-HHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWARN-FSSSE-ELVTEFVR  229 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~~-y~s~E-elI~gf~~  229 (473)
                      +.|.+|||+|+||+||||+|..||.+||++.+++||.+|+.||...+.++      +.+.+|..- .+..+ ..+.||.+
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d  166 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED  166 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence            99999999999999999999999999999999999999999999776433      236778642 12223 38999999


Q ss_pred             cchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCcccccccccCC
Q 011994          230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWEN  309 (473)
Q Consensus       230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (473)
                      |++.|..|+.+++++++.+|.++||||+|+.|++.-...+                                        
T Consensus       167 qa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~----------------------------------------  206 (299)
T COG2074         167 QASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL----------------------------------------  206 (299)
T ss_pred             HhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh----------------------------------------
Confidence            9999999999999999999999999999999999622100                                        


Q ss_pred             CCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecch-hhHH
Q 011994          310 GNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADF-DHKA  388 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~-dh~~  388 (473)
                                                                                   +.-.++|||++.|+ +|+ 
T Consensus       207 -------------------------------------------------------------~~n~~~~~l~i~dee~Hr-  224 (299)
T COG2074         207 -------------------------------------------------------------GNNVFMFMLYIADEELHR-  224 (299)
T ss_pred             -------------------------------------------------------------ccceEEEEEEeCCHHHHH-
Confidence                                                                         12468999999997 888 


Q ss_pred             HHHHhhhhhcccc--cccccchHHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHHHHhhh
Q 011994          389 LLEEWILTHTFGD--KCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGIS  460 (473)
Q Consensus       389 lle~~~~~ra~~~--~~~~~~~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~~~~~  460 (473)
                         +.|--|+...  +-+....-++|.-+|+|||||...+. ++.|+-|++-.+++|.|.+=..+.+...++.+
T Consensus       225 ---~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Ar-e~gVPvI~n~di~etv~~il~~i~~~~~r~~~  294 (299)
T COG2074         225 ---ERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVERAR-EHGVPVIENDDIDETVDRILEDIRKRTVRGLS  294 (299)
T ss_pred             ---HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH-hcCCCeeccccHHHHHHHHHHHHHHHHHHHhh
Confidence               3334465544  43444457999999999999999886 89999999999999999999888888777643

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=100.00  E-value=3.6e-41  Score=353.91  Aligned_cols=288  Identities=21%  Similarity=0.307  Sum_probs=246.4

Q ss_pred             ceEEEEEeccCCCccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHH
Q 011994           67 FVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYIS  146 (473)
Q Consensus        67 fvkvkV~l~~~~~h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~  146 (473)
                      |++|-|.-+.. ..-.|||||+|.|+|+.+||++++|++|+.++++.|++.+...+.++++++.|.+.+.+. ++...+.
T Consensus       164 ~~~~~v~~~~~-~~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~-l~~~~a~  241 (475)
T PRK12337        164 AGELFVEEAEG-APRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEE-AGEEVAR  241 (475)
T ss_pred             chheeeeeCCC-CCCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh-hhhhHHH
Confidence            89999999842 233999999999999999999999999999999999988888889999999999998873 4555577


Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCcccccc----
Q 011994          147 RYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWARN----  216 (473)
Q Consensus       147 rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~~----  216 (473)
                      +|.++..+...++|.+|+|+|+||+||||+|..||.++|+.+++.+|.+|+.|++..+.++      +.+.+|...    
T Consensus       242 ~y~la~~i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~  321 (475)
T PRK12337        242 RYRLLRSIRRPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPG  321 (475)
T ss_pred             HHHHHHHhhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcc
Confidence            8888988888778999999999999999999999999999988999999999998766433      234556532    


Q ss_pred             -----ccChHHHHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCC
Q 011994          217 -----FSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNP  291 (473)
Q Consensus       217 -----y~s~EelI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~  291 (473)
                           ....+.++.||.+||..|..++..++++++.+|.+|||||+|+.|+++..                         
T Consensus       322 ~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~-------------------------  376 (475)
T PRK12337        322 EGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH-------------------------  376 (475)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH-------------------------
Confidence                 12356789999999999999999999999999999999999999998521                         


Q ss_pred             ccccccCcccccccccCCCCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 011994          292 VTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPD  371 (473)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  371 (473)
                                                                                                 +...+
T Consensus       377 ---------------------------------------------------------------------------~~~~~  381 (475)
T PRK12337        377 ---------------------------------------------------------------------------PYQAG  381 (475)
T ss_pred             ---------------------------------------------------------------------------HHhcC
Confidence                                                                                       01246


Q ss_pred             cEEEEEEEEecchhhHHHHHHhhhhhcccccc-cccch-HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHH
Q 011994          372 PIIIPIVLKMADFDHKALLEEWILTHTFGDKC-LVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHG  449 (473)
Q Consensus       372 ~iivp~vl~~~~~dh~~lle~~~~~ra~~~~~-~~~~~-~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~  449 (473)
                      +++|||+++++|+++|   .++|.+|+.++.. .|.++ .++|+|||+||||||+.+. .+.++-|+|+++++|+|.+|.
T Consensus       382 ~~~i~flv~isdeeeH---~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~-~~~ipvI~n~nid~tv~~~l~  457 (475)
T PRK12337        382 ALVVPMLVTLPDEALH---RRRFELRDRETGASRPRERYLRHFEEIRLIQDHLLRLAR-QEGVPVLPGEDLDESIDKALE  457 (475)
T ss_pred             CceEEEEEEECCHHHH---HHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHHHHHHH-HcCCCeecCccHHHHHHHHHH
Confidence            7999999999998544   2667899998753 33343 6999999999999999886 788899999999999999999


Q ss_pred             HHHHHHHHhhh
Q 011994          450 YLLQCIEKGIS  460 (473)
Q Consensus       450 ~ll~~i~~~~~  460 (473)
                      .+++.++.++.
T Consensus       458 ~i~~~~~~~~~  468 (475)
T PRK12337        458 VVLRRVMAALT  468 (475)
T ss_pred             HHHHHHHHhcC
Confidence            99999998875

>PRK12338 hypothetical protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=226.81  Aligned_cols=192  Identities=25%  Similarity=0.362  Sum_probs=152.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCccccc-----cccC-hHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR-----NFSS-SEELVT  225 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~-----~y~s-~EelI~  225 (473)
                      ++|.+|+|+|+|||||||+|..||.++|+.+++.+|.+|+.+++..+.++      +.+.+|..     .+.+ .+..+.
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~   81 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA   81 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence            46899999999999999999999999999998899999999998765433      22445542     1222 456679


Q ss_pred             HHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCccccccc
Q 011994          226 EFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVS  305 (473)
Q Consensus       226 gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      +|..||.+|..++.+++.+++.+|.+|||||+||.|++.....+                                    
T Consensus        82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~------------------------------------  125 (319)
T PRK12338         82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF------------------------------------  125 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh------------------------------------
Confidence            99999999999999999999999999999999999999643000                                    


Q ss_pred             ccCCCCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecch-
Q 011994          306 DWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADF-  384 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~-  384 (473)
                                                                                    . .. -+|||++.++++ 
T Consensus       126 --------------------------------------------------------------~-~~-~~v~~~vl~~dee  141 (319)
T PRK12338        126 --------------------------------------------------------------E-EN-ASIHFFILSADEE  141 (319)
T ss_pred             --------------------------------------------------------------c-cc-CceEEEEEECCHH
Confidence                                                                          0 01 246777777776 


Q ss_pred             hhHHHHHHhhhhhcccccccccchHHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHH
Q 011994          385 DHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCI  455 (473)
Q Consensus       385 dh~~lle~~~~~ra~~~~~~~~~~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i  455 (473)
                      .|+    ++|..|+..+. .+.+..++|.++|+||||||+.+ ..+.|+.|++.++++|++.++.+|-+..
T Consensus       142 ~h~----~Rf~~R~~~~~-r~~~~l~~f~~Ir~Iq~~l~~~A-~e~~VpvI~N~did~Tv~~ile~I~e~s  206 (319)
T PRK12338        142 VHK----ERFVKRAMEIK-RGGKQLEYFRENRIIHDHLVEQA-REHNVPVIKNDDIDCTVKKMLSYIREVC  206 (319)
T ss_pred             HHH----HHHHHhhhccC-CchhhhhChHHHHHHHHHHHHhH-hhCCCceeCCCcHHHHHHHHHHHHHhhe
Confidence            565    55688987664 22345699999999999999985 4888899999999999999999887654

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.90  E-value=8.4e-23  Score=194.16  Aligned_cols=182  Identities=19%  Similarity=0.289  Sum_probs=145.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCC-CC---CCccccccc-cChHHHHHHHHhcchh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAP-LS---SSPVWARNF-SSSEELVTEFVRECRI  233 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~p-L~---~~~~W~~~y-~s~EelI~gf~~q~~~  233 (473)
                      .|++|+|+|+||+||||+|..|+.++|+.+++.+|.+|+.|+...+.. ..   .+.+|...- ...+..+.+|..|+..
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999755422 21   233453211 2346788999999999


Q ss_pred             hHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCcccccccccCCCCCC
Q 011994          234 VRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNS  313 (473)
Q Consensus       234 V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (473)
                      |..++...+..++.+|.++|+||+|+.|.+...              .                                
T Consensus        82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~--------------~--------------------------------  115 (197)
T PRK12339         82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDE--------------N--------------------------------  115 (197)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH--------------H--------------------------------
Confidence            999999999999999999999999999988411              0                                


Q ss_pred             CCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecch-hhHHHHHH
Q 011994          314 PEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADF-DHKALLEE  392 (473)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~-dh~~lle~  392 (473)
                                                                          .    .+.++.|+|++++. .|+    +
T Consensus       116 ----------------------------------------------------~----~~~v~~i~l~v~d~e~lr----~  135 (197)
T PRK12339        116 ----------------------------------------------------R----TNNIRAFYLYIRDAELHR----S  135 (197)
T ss_pred             ----------------------------------------------------H----hcCeEEEEEEeCCHHHHH----H
Confidence                                                                0    01246788998754 565    6


Q ss_pred             hhhhhccccc-ccccc-hHHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHH
Q 011994          393 WILTHTFGDK-CLVQN-KDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWL  447 (473)
Q Consensus       393 ~~~~ra~~~~-~~~~~-~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~l  447 (473)
                      ++..|..... ..|.+ ..++|.++|+||||||..+. .+.|+-|+++++++|++.+
T Consensus       136 Rl~~R~~~~~~~~p~~~~~~~~~~ir~i~~~l~~~a~-~~~i~~i~~~~~~~~~~~~  191 (197)
T PRK12339        136 RLADRINYTHKNSPGKRLAEHLPEYRTIMDYSIADAR-GYNIKVIDTDNYREARNPL  191 (197)
T ss_pred             HHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeecCccHHHHHHHH
Confidence            7888987542 33444 36999999999999999885 9999999999999999865

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.92  E-value=3.3e-09  Score=113.19  Aligned_cols=83  Identities=28%  Similarity=0.342  Sum_probs=77.0

Q ss_pred             ccceEEEEEeccCCCccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhh
Q 011994           65 YDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEY  144 (473)
Q Consensus        65 YdfvkvkV~l~~~~~h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~  144 (473)
                      --||+|.|...   .+..|||||||+|+|+.+|++++.||.||.+|.+.|...++..|+.++|+..++..|.+. |+++.
T Consensus        78 ~~~~~i~V~~~---~~~~PFSkGiLarSL~~aG~~~~~Ay~iA~~Ve~~Lr~~~~~~Is~~eL~~~v~~~l~~~-~g~e~  153 (475)
T PRK12337         78 PAFVDIVVREG---RGRRPFSRGVLARSLEDAGFSPREAYELASAVELRLRQEGVREIGAKELEKRTARELAER-YGEEA  153 (475)
T ss_pred             CCcceEEEecC---CCCCCcchhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHHh-cCHHH
Confidence            34999999997   788999999999999999999999999999999999999999999999999999999984 77778


Q ss_pred             HHHHHHH
Q 011994          145 ISRYRMM  151 (473)
Q Consensus       145 a~rY~l~  151 (473)
                      +++|..-
T Consensus       154 a~ry~~~  160 (475)
T PRK12337        154 RLRYRAR  160 (475)
T ss_pred             HHHHHHh
Confidence            8988853

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.85  E-value=9.6e-09  Score=89.77  Aligned_cols=84  Identities=24%  Similarity=0.383  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGD  241 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~~  241 (473)
                      +|+++|+|||||||+|..|+..++..+ +..|.++..+.+.....      +..    ..+..       ..+...+...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~-i~~D~~~~~~~~~~~~~------~~~----~~~~~-------~~~~~~~~~~   62 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVV-ISQDEIRRRLAGEDPPS------PSD----YIEAE-------ERAYQILNAA   62 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEE-EEHHHHHHHHCCSSSGC------CCC----CHHHH-------HHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEE-EeHHHHHHHHccccccc------chh----HHHHH-------HHHHHHHHHH
Confidence            689999999999999999999999665 58888888776522111      000    00111       1223345567


Q ss_pred             HHHHHhCCCcEEEEcccCCccc
Q 011994          242 LKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       242 IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      +...+..|.++|||++++.+..
T Consensus        63 ~~~~l~~g~~~vvd~~~~~~~~   84 (143)
T PF13671_consen   63 IRKALRNGNSVVVDNTNLSREE   84 (143)
T ss_dssp             HHHHHHTT-EEEEESS--SHHH
T ss_pred             HHHHHHcCCCceeccCcCCHHH
Confidence            7788999999999999887744

...

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.84  E-value=5.1e-09  Score=97.53  Aligned_cols=100  Identities=26%  Similarity=0.392  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH-HH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LA  239 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg-L~  239 (473)
                      ..|||+|+||+||||++.+||..+|+++|..+|.+++.-       +  +..|...|            .|..+.++ +.
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l--~~gyDE~y------------~c~i~DEdkv~   66 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-------L--YEGYDEEY------------KCHILDEDKVL   66 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-------c--hhcccccc------------cCccccHHHHH
Confidence            368999999999999999999999999999999999851       1  12233222            24445444 56


Q ss_pred             HHHHHHHhCCCcEE-EEcccCCccccc-ccccCCCCCccccccC
Q 011994          240 GDLKKAMKDGKPII-IEGIHLDPSIYL-MDDDSKAPATTTEKTN  281 (473)
Q Consensus       240 ~~IekaL~eG~sVI-IEGvhL~Pel~l-~~~~~r~~~~~~~k~~  281 (473)
                      ..++..|..|..|| ++|+.++|+... .=...|-+++++++-+
T Consensus        67 D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY~RL  110 (176)
T KOG3347|consen   67 DELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLYDRL  110 (176)
T ss_pred             HHHHHHHhcCCcEEeecccCccchhheeEEEEEecCchHHHHHH
Confidence            67888888899988 999999998642 1122344555555533

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.79  E-value=6.9e-08  Score=99.31  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=75.1

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHH-HhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKL-LVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG  167 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~-Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G  167 (473)
                      |...|..+||.+++|.+|..++++. ....++.  +.+.+++.+.+.|.+. +.+.  ....+...+....+|.+|||+|
T Consensus        72 LE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~--~~~~v~~~l~~~l~~i-l~~~--~~~~~~~~~~~~~~p~Vil~vG  146 (340)
T COG0552          72 LEELLIEADVGVETAEEIIEELRKREGKKKKIK--DEETVKEALREALIEI-LRPV--DKVDLPLEIPKEKKPFVILFVG  146 (340)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHhcccccCC--CHHHHHHHHHHHHHHH-hccc--ccccchhhhccCCCcEEEEEEe
Confidence            6788999999999999999999996 4333332  2455555555554442 1110  0112233334466799999999


Q ss_pred             CCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHHH
Q 011994          168 TACVGKSTIATQLAQRL---NLPNVL-QTDMVYELL  199 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~~L  199 (473)
                      .+|+||||...+||..|   |.+.++ ++|++|...
T Consensus       147 VNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA  182 (340)
T COG0552         147 VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA  182 (340)
T ss_pred             cCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence            99999999999999988   777766 689999753

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.77  E-value=3e-08  Score=90.88  Aligned_cols=87  Identities=20%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~  240 (473)
                      +|+|+|+|||||||+|+.||.++|+.++..+|.+|+.+....        .|       ...+..|...+..+...+ ..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~--------~~-------~~~~~~~~~~g~~~~~~~~~~   65 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGS--------EN-------GELIESMIKNGKIVPSEVTVK   65 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCC--------hH-------HHHHHHHHHCCCcCCHHHHHH
Confidence            589999999999999999999999999877899999876311        01       123444544444444443 33


Q ss_pred             HHHHHHhC--CCcEEEEcccCCccc
Q 011994          241 DLKKAMKD--GKPIIIEGIHLDPSI  263 (473)
Q Consensus       241 ~IekaL~e--G~sVIIEGvhL~Pel  263 (473)
                      .+..++..  +..+|+||.......
T Consensus        66 ll~~~~~~~~~~~~vlDg~p~~~~q   90 (183)
T TIGR01359        66 LLKNAIQADGSKKFLIDGFPRNEEN   90 (183)
T ss_pred             HHHHHHhccCCCcEEEeCCCCCHHH
Confidence            44444432  678999997655443

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14531 adenylate kinase; Provisional

Probab=98.73  E-value=6.8e-08  Score=89.90  Aligned_cols=87  Identities=15%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH-
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA-  239 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~-  239 (473)
                      ..|+|+|+|||||||++..||.++|+.++..+|.+|+.+....  +             ....+..|...+..+.+.+. 
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~--~-------------~~~~~~~~~~~G~~v~d~l~~   67 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGS--A-------------LGQEAEAVMNRGELVSDALVL   67 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCC--H-------------HHHHHHHHHHcCCCCCHHHHH
Confidence            4699999999999999999999999999877899998865321  0             11234555555555555542 


Q ss_pred             HHHHHHHh--CCCcEEEEcccCCcc
Q 011994          240 GDLKKAMK--DGKPIIIEGIHLDPS  262 (473)
Q Consensus       240 ~~IekaL~--eG~sVIIEGvhL~Pe  262 (473)
                      ..+...+.  .+..+|+||......
T Consensus        68 ~~~~~~l~~~~~~g~ilDGfpr~~~   92 (183)
T PRK14531         68 AIVESQLKALNSGGWLLDGFPRTVA   92 (183)
T ss_pred             HHHHHHHhhccCCcEEEeCCCCCHH
Confidence            33433443  356688898665543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.66  E-value=4.4e-07  Score=93.64  Aligned_cols=106  Identities=20%  Similarity=0.233  Sum_probs=72.6

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccc-c-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDV-S-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I-~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |...|..+||.+.+|.+|..++++.+.+.++..- . .+.+.+.+.+.|.+. +...  ..+.+...+....+|.+|+|+
T Consensus        70 l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~--~~~~~~~~~~~~~~~~vi~~~  146 (336)
T PRK14974         70 LELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEV-LSVG--DLFDLIEEIKSKGKPVVIVFV  146 (336)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHH-hCCC--cchhhhhhhhccCCCeEEEEE
Confidence            7788999999999999999999999988766422 1 223444444444331 1110  012333334445679999999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMVYE  197 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~  197 (473)
                      |++|+||||++..||..+   |... ++.+|++|.
T Consensus       147 G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~  181 (336)
T PRK14974        147 GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA  181 (336)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence            999999999999998776   5544 356787764

>PLN02200 adenylate kinase family protein

Probab=98.64  E-value=1.4e-07  Score=92.15  Aligned_cols=44  Identities=16%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|++|+|+|+|||||||+|..||.++|+.++..+|.+|+.+..
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~   84 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS   84 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc
Confidence            45889999999999999999999999999998888999987653

>COG0645 Predicted kinase [General function prediction only]

Probab=98.63  E-value=1.6e-07  Score=88.66  Aligned_cols=86  Identities=24%  Similarity=0.308  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccc---cccChHHHHHHHHhcchhhHhH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWAR---NFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~---~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      .+++++|.||+||||+|+.|++.+|... +.+|.+|+.|++..        .|.+   ..++.+...        .|+..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~-lrsD~irk~L~g~p--------~~~r~~~g~ys~~~~~--------~vy~~   64 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIR-LRSDVIRKRLFGVP--------EETRGPAGLYSPAATA--------AVYDE   64 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceE-EehHHHHHHhcCCc--------ccccCCCCCCcHHHHH--------HHHHH
Confidence            5789999999999999999999999997 49999999998721        1221   112333333        34455


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      +......+|..|.+||+|++|..|..
T Consensus        65 l~~~A~l~l~~G~~VVlDa~~~r~~~   90 (170)
T COG0645          65 LLGRAELLLSSGHSVVLDATFDRPQE   90 (170)
T ss_pred             HHHHHHHHHhCCCcEEEecccCCHHH
Confidence            66777789999999999999999865

>PRK06762 hypothetical protein; Provisional

Probab=98.63  E-value=6.3e-08  Score=87.71  Aligned_cols=42  Identities=31%  Similarity=0.462  Sum_probs=34.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe-EEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPN-VLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~-Vi~tD~ir~~Lr  200 (473)
                      +|.+|+|+|+|||||||+|+.|+++++... ++..|.++..+.
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~   43 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML   43 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc
Confidence            588999999999999999999999995432 357888887653

>PLN02674 adenylate kinase

Probab=98.61  E-value=2.7e-07  Score=91.44  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      ..++.|+|.|+|||||+|+|..||.++|+.++..+|.+|+.+....  +             ....+..+...+..|...
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s--~-------------~g~~i~~~~~~G~lvpd~   93 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT--P-------------LGIKAKEAMDKGELVSDD   93 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccC--h-------------hhHHHHHHHHcCCccCHH
Confidence            3456799999999999999999999999999988899999875421  1             113567777777777777


Q ss_pred             H-HHHHHHHHhC---CCcEEEEcccCC
Q 011994          238 L-AGDLKKAMKD---GKPIIIEGIHLD  260 (473)
Q Consensus       238 L-~~~IekaL~e---G~sVIIEGvhL~  260 (473)
                      + ..++...+..   +..+|+||.-..
T Consensus        94 iv~~lv~~~l~~~~~~~g~ilDGfPRt  120 (244)
T PLN02674         94 LVVGIIDEAMKKPSCQKGFILDGFPRT  120 (244)
T ss_pred             HHHHHHHHHHhCcCcCCcEEEeCCCCC
Confidence            5 3455556643   356888885443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.60  E-value=8.4e-08  Score=81.91  Aligned_cols=32  Identities=44%  Similarity=0.711  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTD  193 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD  193 (473)
                      +|+|+|+|||||||+|+.||+++|++++..+|
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            68999999999999999999999999875555

...

>PRK14532 adenylate kinase; Provisional

Probab=98.60  E-value=2.3e-07  Score=85.84  Aligned_cols=39  Identities=21%  Similarity=0.356  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~   40 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIA   40 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHH
Confidence            589999999999999999999999999877799998764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.60  E-value=1.5e-07  Score=88.83  Aligned_cols=84  Identities=25%  Similarity=0.465  Sum_probs=60.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH-H
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA-G  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~-~  240 (473)
                      .|+|.|+||+||||+|++|+++++++++..+|.+|......               ......+..|..+..+|..++. .
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~---------------t~lg~~~k~~i~~g~lv~d~i~~~   66 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER---------------TELGEEIKKYIDKGELVPDEIVNG   66 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC---------------ChHHHHHHHHHHcCCccchHHHHH
Confidence            58999999999999999999999999985567777653321               1123456778888888877764 5


Q ss_pred             HHHHHHhCC--C-cEEEEcccCC
Q 011994          241 DLKKAMKDG--K-PIIIEGIHLD  260 (473)
Q Consensus       241 ~IekaL~eG--~-sVIIEGvhL~  260 (473)
                      .+...+.+.  . .+|++|.-..
T Consensus        67 ~v~~rl~~~d~~~~~I~dg~PR~   89 (178)
T COG0563          67 LVKERLDEADCKAGFILDGFPRT   89 (178)
T ss_pred             HHHHHHHhhcccCeEEEeCCCCc
Confidence            565555543  2 5888884433

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.59  E-value=2.3e-07  Score=90.70  Aligned_cols=86  Identities=24%  Similarity=0.358  Sum_probs=60.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      ..|+.|+|.|+|||||||+|+.||+++|++++..+|.+|+.+....  +             ....+..|...+.+|...
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t--~-------------lg~~i~~~~~~G~lvpd~   68 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKT--T-------------IGKEIQKVVTSGNLVPDN   68 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCC--h-------------HHHHHHHHHHcCCcCCHH
Confidence            4578899999999999999999999999999988899998764311  1             123566677666555544


Q ss_pred             H-HHHHHHHHh-----CCCcEEEEccc
Q 011994          238 L-AGDLKKAMK-----DGKPIIIEGIH  258 (473)
Q Consensus       238 L-~~~IekaL~-----eG~sVIIEGvh  258 (473)
                      + ...+...+.     .+..+|+||..
T Consensus        69 iv~~lv~~~l~~~~~~~~~g~iLDGfP   95 (229)
T PTZ00088         69 LVIAIVKDEIAKVTDDCFKGFILDGFP   95 (229)
T ss_pred             HHHHHHHHHHHhhccccCceEEEecCC
Confidence            2 233333332     34668999943

>TIGR01351 adk adenylate kinases

Probab=98.58  E-value=2e-07  Score=88.44  Aligned_cols=84  Identities=18%  Similarity=0.354  Sum_probs=57.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AGD  241 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~~  241 (473)
                      |+|.|+|||||||+|..||.++|+.++..+|.+|+.+.....               ....+..+...+..|...+ ...
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~---------------~~~~~~~~~~~g~~vp~~~~~~l   66 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP---------------LGKKAKEYMEKGELVPDEIVNQL   66 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH---------------HHHHHHHHHhCCCCCCHHHHHHH
Confidence            789999999999999999999999998778999987653210               1123455555555554442 344


Q ss_pred             HHHHHhC----CCcEEEEcccCCc
Q 011994          242 LKKAMKD----GKPIIIEGIHLDP  261 (473)
Q Consensus       242 IekaL~e----G~sVIIEGvhL~P  261 (473)
                      +...+..    +..+|+||.....
T Consensus        67 ~~~~i~~~~~~~~~~ilDGfPrt~   90 (210)
T TIGR01351        67 VKERLTQNQDNENGFILDGFPRTL   90 (210)
T ss_pred             HHHHHhcCcccCCcEEEeCCCCCH
Confidence            4445543    5789999954433

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14527 adenylate kinase; Provisional

Probab=98.57  E-value=2.4e-07  Score=86.52  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=38.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .+|.+|+|.|+|||||||+|+.|+.++|+.++..+|.+++.+.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~   46 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVA   46 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHh
Confidence            4678999999999999999999999999998867788887653

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.56  E-value=2.2e-07  Score=91.81  Aligned_cols=88  Identities=27%  Similarity=0.341  Sum_probs=59.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhhCCCCCCCCCccccccccC-hHHHHHHHHhcchhhHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSS-SEELVTEFVRECRIVRK  236 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s-~EelI~gf~~q~~~V~e  236 (473)
                      ++.+|+++|+|||||||+|+.|++++ ++.+ +..|.+++.+.....  .    .|. .|.. .+.          .+..
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~-l~~D~~r~~~~~~~~--~----~~~-~~~~~~~~----------~~~~   62 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVN-VNRDDLRQSLFGHGE--W----GEY-KFTKEKED----------LVTK   62 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEE-EeccHHHHHhcCCCc--c----ccc-ccChHHHH----------HHHH
Confidence            36799999999999999999999999 7765 477888877543211  1    110 1110 111          1222


Q ss_pred             HHHHHHHHHHhCCCcEEEEcccCCcccc
Q 011994          237 GLAGDLKKAMKDGKPIIIEGIHLDPSIY  264 (473)
Q Consensus       237 gL~~~IekaL~eG~sVIIEGvhL~Pel~  264 (473)
                      .+...+..++..|..+|++++++.|...
T Consensus        63 ~~~~~~~~~l~~g~~vIid~~~~~~~~~   90 (300)
T PHA02530         63 AQEAAALAALKSGKSVIISDTNLNPERR   90 (300)
T ss_pred             HHHHHHHHHHHcCCeEEEeCCCCCHHHH
Confidence            3344556677899999999999987764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.53  E-value=3.9e-07  Score=85.95  Aligned_cols=41  Identities=34%  Similarity=0.485  Sum_probs=37.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      ++|.|.|+|||||||+|+.||++||+++|.+++.||+..+.
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e   41 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE   41 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH
Confidence            47999999999999999999999999999889999987654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.53  E-value=4e-07  Score=83.09  Aligned_cols=39  Identities=15%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +|+|.|+|||||||+++.|+..+|+.++..+|.+++.+.
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~   43 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVA   43 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHh
Confidence            788999999999999999999999999877788888653

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.49  E-value=5.9e-07  Score=85.49  Aligned_cols=84  Identities=17%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~  240 (473)
                      .|+|.|+|||||||+|+.||.++|+.++..+|.+|+.+....       +        ....+..+...+..+...+ ..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~-------~--------~~~~~~~~~~~g~~~p~~~~~~   66 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGT-------E--------LGKEAKSYMDAGELVPDEIVIG   66 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccc-------h--------HHHHHHHHHHcCCcCCHHHHHH
Confidence            589999999999999999999999999877899998765421       0        1123444444444444432 33


Q ss_pred             HHHHHHhC---CCcEEEEcccCC
Q 011994          241 DLKKAMKD---GKPIIIEGIHLD  260 (473)
Q Consensus       241 ~IekaL~e---G~sVIIEGvhL~  260 (473)
                      .+...+..   +..+|+||....
T Consensus        67 ~i~~~l~~~~~~~g~VlDGfPr~   89 (215)
T PRK00279         67 LVKERLAQPDCKNGFLLDGFPRT   89 (215)
T ss_pred             HHHHHHhccCccCCEEEecCCCC
Confidence            34434432   347999995433

>PRK14530 adenylate kinase; Provisional

Probab=98.48  E-value=5.8e-07  Score=85.57  Aligned_cols=88  Identities=17%  Similarity=0.306  Sum_probs=56.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~  240 (473)
                      .|+|.|+|||||||+|+.||+++|+.++..+|.+++....... ++          ......+..+...+..+...+ ..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~-~~----------~~~~~~~~~~~~~g~~~~d~~~~~   73 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS-DM----------DTEYDTPGEYMDAGELVPDAVVNE   73 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc-cc----------cchHHHHHHHHHcCCCCCHHHHHH
Confidence            5889999999999999999999999999888999986422111 00          000011233444444444433 34


Q ss_pred             HHHHHHhCCCcEEEEcccCC
Q 011994          241 DLKKAMKDGKPIIIEGIHLD  260 (473)
Q Consensus       241 ~IekaL~eG~sVIIEGvhL~  260 (473)
                      .+...+.....+|+||....
T Consensus        74 ~l~~~l~~~~~~IldG~pr~   93 (215)
T PRK14530         74 IVEEALSDADGFVLDGYPRN   93 (215)
T ss_pred             HHHHHHhcCCCEEEcCCCCC
Confidence            45566666678999984333

>PLN02459 probable adenylate kinase

Probab=98.48  E-value=6.4e-07  Score=89.67  Aligned_cols=90  Identities=23%  Similarity=0.358  Sum_probs=66.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      .+|+.|+|.|+|||||+|+|..||..+|+.+|..+|.+|+.+....  +             ....+..|..++..|...
T Consensus        27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t--~-------------lg~~i~~~~~~G~lVPde   91 (261)
T PLN02459         27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSG--P-------------LGAQLKEIVNQGKLVPDE   91 (261)
T ss_pred             cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccc--h-------------hHHHHHHHHHcCCccCHH
Confidence            3567788899999999999999999999999988999999865321  1             123577888888888777


Q ss_pred             H-HHHHHHHHhC-----CCcEEEEcccCCcc
Q 011994          238 L-AGDLKKAMKD-----GKPIIIEGIHLDPS  262 (473)
Q Consensus       238 L-~~~IekaL~e-----G~sVIIEGvhL~Pe  262 (473)
                      + ..++...|..     ...+|+||.-..-.
T Consensus        92 iv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~  122 (261)
T PLN02459         92 IIFSLLSKRLEAGEEEGESGFILDGFPRTVR  122 (261)
T ss_pred             HHHHHHHHHHhcccccCCceEEEeCCCCCHH
Confidence            5 3455555543     35588998554433

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.46  E-value=8.9e-07  Score=81.37  Aligned_cols=82  Identities=27%  Similarity=0.441  Sum_probs=54.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH-HHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LAGD  241 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg-L~~~  241 (473)
                      |+|.|+|||||||+|..||.++|+.++..+|.+++.+....       +.        ...+..+...+..+... +...
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~-------~~--------~~~~~~~~~~g~~~~~~~~~~l   66 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGT-------EL--------GKKAKEYIDSGKLVPDEIVIKL   66 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCC-------hH--------HHHHHHHHHcCCccCHHHHHHH
Confidence            79999999999999999999999999877888888754321       11        11233343333333332 2344


Q ss_pred             HHHHHhC---CCcEEEEcccC
Q 011994          242 LKKAMKD---GKPIIIEGIHL  259 (473)
Q Consensus       242 IekaL~e---G~sVIIEGvhL  259 (473)
                      +...+..   +..+|+||...
T Consensus        67 ~~~~l~~~~~~~~~vldg~Pr   87 (194)
T cd01428          67 LKERLKKPDCKKGFILDGFPR   87 (194)
T ss_pred             HHHHHhcccccCCEEEeCCCC
Confidence            4555553   57799998533

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.45  E-value=6.1e-07  Score=84.60  Aligned_cols=93  Identities=26%  Similarity=0.332  Sum_probs=54.6

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHHHHhhCCCCCCCCCcccccc----ccChHHHHHHHHh
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYELLRTSTDAPLSSSPVWARN----FSSSEELVTEFVR  229 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~----y~s~EelI~gf~~  229 (473)
                      ....|.+++++|+|||||||++..+...+  +-..++..|.++..+           +.|...    .........   .
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----------p~~~~~~~~~~~~~~~~~~---~   76 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----------PDYDELLKADPDEASELTQ---K   76 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----------TTHHHHHHHHCCCTHHHHH---H
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----------cchhhhhhhhhhhhHHHHH---H
Confidence            45789999999999999999999999987  444456888887642           112210    000001111   1


Q ss_pred             cchhhHhHHHHHHHHHHhCCCcEEEEcccCCccccc
Q 011994          230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL  265 (473)
Q Consensus       230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l  265 (473)
                      .+.   ......++.++.++.+||+||++-.|+.+.
T Consensus        77 ~a~---~~~~~~~~~a~~~~~nii~E~tl~~~~~~~  109 (199)
T PF06414_consen   77 EAS---RLAEKLIEYAIENRYNIIFEGTLSNPSKLR  109 (199)
T ss_dssp             HHH---HHHHHHHHHHHHCT--EEEE--TTSSHHHH
T ss_pred             HHH---HHHHHHHHHHHHcCCCEEEecCCCChhHHH
Confidence            111   123456778899999999999999998874

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.44  E-value=1.4e-06  Score=78.36  Aligned_cols=39  Identities=33%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      ++|+|.|.+||||||+|..|++++|++++..+|.+++..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~   39 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA   39 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH
Confidence            489999999999999999999999999875556666643

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.38  E-value=7.1e-06  Score=82.12  Aligned_cols=99  Identities=26%  Similarity=0.271  Sum_probs=69.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG  167 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~G  167 (473)
                      |...|..+||.+..|.+|..++++.+.+.+...  .+.+...+.+.|.+. +..     .  ...+. ....|.+|+++|
T Consensus        10 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~-~~~-----~--~~~~~~~~~~~~vi~l~G   79 (272)
T TIGR00064        10 LEEILLESDVGYEVVEKIIEALKKELKGKKVKD--AELLKEILKEYLKEI-LKE-----T--DLELIVEENKPNVILFVG   79 (272)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCC--HHHHHHHHHHHHHHH-Hcc-----c--chhhcccCCCCeEEEEEC
Confidence            677899999999999999999999987665543  345566666655542 111     0  01111 234578999999


Q ss_pred             CCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 011994          168 TACVGKSTIATQLAQRL---NLPN-VLQTDMVYE  197 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~  197 (473)
                      ++|+||||++..||..+   |... ++..|.+|.
T Consensus        80 ~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~  113 (272)
T TIGR00064        80 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA  113 (272)
T ss_pred             CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence            99999999999999877   5443 346676543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK03839 putative kinase; Provisional

Probab=98.36  E-value=5.2e-07  Score=83.08  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +|+|.|+|||||||+|+.||+++|++++..+|.+++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~   37 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK   37 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh
Confidence            689999999999999999999999999766666654

>PRK04040 adenylate kinase; Provisional

Probab=98.36  E-value=2.2e-06  Score=81.25  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=36.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~Vi~tD~ir~~Lr  200 (473)
                      .|++|+|+|.|||||||+++.|++++  ++.++..+|.+++...
T Consensus         1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~   44 (188)
T PRK04040          1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAK   44 (188)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHH
Confidence            36799999999999999999999999  8998878888777644

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.35  E-value=1.4e-06  Score=78.30  Aligned_cols=78  Identities=23%  Similarity=0.398  Sum_probs=56.2

Q ss_pred             EEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HHHHH
Q 011994          165 VCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AGDLK  243 (473)
Q Consensus       165 I~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~~Ie  243 (473)
                      |.|+|||||+|+|..||.++|+.+|...|.+|+.+....       +        ....+..+...+..|...+ ...+.
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s-------~--------~g~~i~~~l~~g~~vp~~~v~~ll~   65 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDS-------E--------LGKQIQEYLDNGELVPDELVIELLK   65 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTS-------H--------HHHHHHHHHHTTSS--HHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhh-------H--------HHHHHHHHHHhhccchHHHHHHHHH
Confidence            689999999999999999999999988999999875311       1        1235677777777776664 34455


Q ss_pred             HHHh---CCCcEEEEcc
Q 011994          244 KAMK---DGKPIIIEGI  257 (473)
Q Consensus       244 kaL~---eG~sVIIEGv  257 (473)
                      ..+.   ....+|+||.
T Consensus        66 ~~l~~~~~~~g~ildGf   82 (151)
T PF00406_consen   66 ERLEQPPCNRGFILDGF   82 (151)
T ss_dssp             HHHHSGGTTTEEEEESB
T ss_pred             HHHhhhcccceeeeeec
Confidence            5554   3467888885

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK04182 cytidylate kinase; Provisional

Probab=98.35  E-value=2.9e-06  Score=76.74  Aligned_cols=40  Identities=33%  Similarity=0.548  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ++|+|.|.+||||||+|+.||.++|++++..+|.+++...
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~   40 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAK   40 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHH
Confidence            4799999999999999999999999998754666776543

>PRK13808 adenylate kinase; Provisional

Probab=98.35  E-value=1.2e-05  Score=83.13  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .|+|.|+|||||||++..|+..+|+.++..+|.+|+.+.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~   40 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA   40 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhh
Confidence            488999999999999999999999999888899998764

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.34  E-value=2.5e-06  Score=78.65  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHHHhhCCCCCCCCCcccccc--ccChHHHHHHHHhcchhhHhH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARN--FSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~~Lr~~~s~pL~~~~~W~~~--y~s~EelI~gf~~q~~~V~eg  237 (473)
                      .+|+|.|+|||||||+|+.|+..++..++ +..|.++..+........  ...+...  .+.++...       ..++..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~y~~   73 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAE--GGIEFDGDGGVSPGPEF-------RLLEGA   73 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccc--cccccCccCCcccchHH-------HHHHHH
Confidence            48999999999999999999999876544 367888776542110000  0000000  00111111       123444


Q ss_pred             HHHHHHHHHhCCCcEEEEcccC
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHL  259 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL  259 (473)
                      +...+...++.|..||+|+++.
T Consensus        74 ~~~~~~~~l~~G~~VIvD~~~~   95 (175)
T cd00227          74 WYEAVAAMARAGANVIADDVFL   95 (175)
T ss_pred             HHHHHHHHHhCCCcEEEeeecc
Confidence            5566777889999999999877

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.33  E-value=2.4e-06  Score=90.93  Aligned_cols=102  Identities=15%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCccc-cc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~-I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      +.+.|.++||.+.++.++..++++.+.+..+.. ++ ...+...+++.|.+. ++.. ...+.     ....+|.+|+|+
T Consensus        34 i~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~-l~~~-~~~~~-----~~~~~~~vi~lv  106 (429)
T TIGR01425        34 ICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNL-VDPG-VEAFT-----PKKGKQNVIMFV  106 (429)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hCCC-Ccccc-----ccCCCCeEEEEE
Confidence            678899999999999999999999988776542 22 234566666665541 1111 00111     123568999999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVYE  197 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~  197 (473)
                      |++|+||||++..||..+   |.. .++.+|.+|-
T Consensus       107 G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~  141 (429)
T TIGR01425       107 GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA  141 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence            999999999999999877   654 4457888773

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK02496 adk adenylate kinase; Provisional

Probab=98.32  E-value=3.3e-06  Score=78.03  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|+|.|+|||||||+|+.|+..+|+.++..+|.+++.+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~   42 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKE   42 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhc
Confidence            46899999999999999999999999998777888887643

>PRK14529 adenylate kinase; Provisional

Probab=98.31  E-value=1.8e-06  Score=84.46  Aligned_cols=87  Identities=15%  Similarity=0.255  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~  240 (473)
                      .|+|.|+|||||||+|..|+.++|+.++..+|.+|+.+....  +             ....+..|...+..|...+ ..
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t--~-------------lg~~i~~~i~~G~lvpdei~~~   66 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGT--E-------------LGKKAKEYIDRGDLVPDDITIP   66 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCC--h-------------HHHHHHHHHhccCcchHHHHHH
Confidence            588999999999999999999999999877899998653211  1             1235677777777777764 34


Q ss_pred             HHHHHHhC--CCcEEEEcccCCccc
Q 011994          241 DLKKAMKD--GKPIIIEGIHLDPSI  263 (473)
Q Consensus       241 ~IekaL~e--G~sVIIEGvhL~Pel  263 (473)
                      .+...|..  ...+|+||.--.-..
T Consensus        67 lv~~~l~~~~~~g~iLDGfPRt~~Q   91 (223)
T PRK14529         67 MILETLKQDGKNGWLLDGFPRNKVQ   91 (223)
T ss_pred             HHHHHHhccCCCcEEEeCCCCCHHH
Confidence            55555543  456889885444433

>PRK06217 hypothetical protein; Validated

Probab=98.29  E-value=1.5e-06  Score=80.74  Aligned_cols=35  Identities=31%  Similarity=0.636  Sum_probs=30.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      +.|+|.|.|||||||+|+.|++.+|++++ ..|.+.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~-~~D~~~   36 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHL-DTDDYF   36 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEE-EcCcee
Confidence            46999999999999999999999999986 555444

>PRK07261 topology modulation protein; Provisional

Probab=98.28  E-value=1.3e-06  Score=81.01  Aligned_cols=33  Identities=36%  Similarity=0.512  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      .|+|+|+|||||||+|+.|+..+|++++ ..|.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i-~~D~~   34 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVL-HLDTL   34 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeE-ecCCE
Confidence            5899999999999999999999999976 44444

>PRK14528 adenylate kinase; Provisional

Probab=98.26  E-value=4.9e-06  Score=78.16  Aligned_cols=80  Identities=21%  Similarity=0.416  Sum_probs=53.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~  240 (473)
                      .|+|.|+|||||||+|+.|+..+|++++..+|.+|+.+....  +             ....+..|...+..+...+ ..
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~--~-------------~g~~~~~~~~~g~lvp~~~~~~   67 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQT--A-------------MGIEAKRYMDAGDLVPDSVVIG   67 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCC--H-------------HHHHHHHHHhCCCccCHHHHHH
Confidence            589999999999999999999999999888888888764311  0             0112445555554444442 23


Q ss_pred             HHHHHHhC---CCcEEEEc
Q 011994          241 DLKKAMKD---GKPIIIEG  256 (473)
Q Consensus       241 ~IekaL~e---G~sVIIEG  256 (473)
                      .+...+.+   ..-+|+||
T Consensus        68 ~~~~~l~~~~~~~g~viDG   86 (186)
T PRK14528         68 IIKDRIREADCKNGFLLDG   86 (186)
T ss_pred             HHHHHHhCcCccCcEEEeC
Confidence            33333332   34588988

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.26  E-value=3.2e-06  Score=81.10  Aligned_cols=88  Identities=18%  Similarity=0.351  Sum_probs=68.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK  236 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e  236 (473)
                      ...|.||++.|.|||||-|.+.+++..+|+.|+.++|.+|+...+..+      .        ...++..++..+.+|..
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gs------e--------~g~~I~~~i~~G~iVP~   70 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGS------E--------RGALIKEIIKNGDLVPV   70 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccC------h--------HHHHHHHHHHcCCcCcH
Confidence            456889999999999999999999999999999889999998554211      1        23578999999999988


Q ss_pred             HH-HHHHHHHHhCCCc---EEEEccc
Q 011994          237 GL-AGDLKKAMKDGKP---IIIEGIH  258 (473)
Q Consensus       237 gL-~~~IekaL~eG~s---VIIEGvh  258 (473)
                      ++ ..+++.+|..-..   ++|||.-
T Consensus        71 ei~~~LL~~am~~~~~~~~fLIDGyP   96 (195)
T KOG3079|consen   71 EITLSLLEEAMRSSGDSNGFLIDGYP   96 (195)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEecCCC
Confidence            85 5667777754333   8888843

>PRK14526 adenylate kinase; Provisional

Probab=98.26  E-value=4e-06  Score=80.99  Aligned_cols=84  Identities=21%  Similarity=0.355  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG  240 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~  240 (473)
                      .|+|.|+|||||||+++.||..+|+.++..+|.+|+.+....       +        ....+..+...+..|...+ ..
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t-------~--------~g~~i~~~~~~g~lvpd~~~~~   66 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNST-------P--------LGKEIKQIVENGQLVPDSITIK   66 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCC-------h--------hhHHHHHHHHcCccCChHHHHH
Confidence            478999999999999999999999999888899998754321       0        1123555555555555544 23


Q ss_pred             HHHHHHh---CCCcEEEEcccCC
Q 011994          241 DLKKAMK---DGKPIIIEGIHLD  260 (473)
Q Consensus       241 ~IekaL~---eG~sVIIEGvhL~  260 (473)
                      .+...|.   ....+|+||.--.
T Consensus        67 lv~~~l~~~~~~~g~ilDGfPR~   89 (211)
T PRK14526         67 IVEDKINTIKNNDNFILDGFPRN   89 (211)
T ss_pred             HHHHHHhcccccCcEEEECCCCC
Confidence            3444443   2456888875443

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.23  E-value=2.4e-06  Score=76.06  Aligned_cols=35  Identities=37%  Similarity=0.556  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +|+|+|+|||||||+|+.|+..++..++ ..|.++.
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i-~~D~~~~   35 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFI-DGDDLHP   35 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEE-eCccccc
Confidence            5899999999999999999999999875 6777775

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK01184 hypothetical protein; Provisional

Probab=98.23  E-value=7.3e-06  Score=75.63  Aligned_cols=40  Identities=25%  Similarity=0.453  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      ++|+|+|+|||||||++. ++.++|++++..+|.+|+.+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~   41 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK   41 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH
Confidence            489999999999999987 7889999987667999998643

>PRK10867 signal recognition particle protein; Provisional

Probab=98.21  E-value=4e-06  Score=89.31  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCccc-ccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~-I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |.+.|.++||.+.++.++..++++.+.+.++.. ++. +.+...+.+.|.+. ++.. ...+.+     ....|.+|+++
T Consensus        34 i~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~-l~~~-~~~~~~-----~~~~p~vI~~v  106 (433)
T PRK10867         34 VRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEI-LGGE-NSELNL-----AAKPPTVIMMV  106 (433)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-hCCC-cceeee-----cCCCCEEEEEE
Confidence            778899999999999999999999988766532 332 33555555544431 1110 001111     23468999999


Q ss_pred             cCCCCcHHHHHHHHHHhc----CCC-eEEcchhHHHH
Q 011994          167 GTACVGKSTIATQLAQRL----NLP-NVLQTDMVYEL  198 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L----g~~-~Vi~tD~ir~~  198 (473)
                      |++|+||||++..||..+    |.. .++..|.+|-.
T Consensus       107 G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a  143 (433)
T PRK10867        107 GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA  143 (433)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence            999999999999999866    443 34578877753

>PRK08118 topology modulation protein; Reviewed

Probab=98.21  E-value=3.3e-06  Score=78.34  Aligned_cols=33  Identities=39%  Similarity=0.629  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      .|+|+|+|||||||+|+.|++.+|++++ ..|.+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~-~lD~l   35 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVH-HLDAL   35 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCce-ecchh
Confidence            5899999999999999999999999986 44443

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.19  E-value=1.1e-05  Score=72.45  Aligned_cols=39  Identities=36%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .|.+|+|+|+|||||||+|..||+++|++++ ..|.+.+.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~-d~d~~~~~   41 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI-DTDHLIEA   41 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE-EChHHHHH
Confidence            4679999999999999999999999999987 55655543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.19  E-value=2.1e-05  Score=83.85  Aligned_cols=101  Identities=16%  Similarity=0.190  Sum_probs=68.9

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT  168 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~  168 (473)
                      |...|...||.+..|.+|...+...+......  ..+.+.+.+.+.|... +...    -.++.. ....++.+|+|+|+
T Consensus       160 L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~--~~~~~~~~l~~~L~~~-l~~~----~~~~~~-~g~~~~~vi~lvGp  231 (432)
T PRK12724        160 LGERLVREGMSQSYVEEMASKLEERLSPVDQG--RNHNVTERAVTYLEER-VSVD----SDLFSG-TGKNQRKVVFFVGP  231 (432)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhcccccc--chHHHHHHHHHHHHHh-cccc----hhhhhh-cccCCCeEEEEECC
Confidence            56899999999999999999999887654433  2345667777777652 1110    011110 11234679999999


Q ss_pred             CCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 011994          169 ACVGKSTIATQLAQRL----NLP-NVLQTDMVYE  197 (473)
Q Consensus       169 ~GsGKSTlA~~LA~~L----g~~-~Vi~tD~ir~  197 (473)
                      +|+||||++..||..+    |.. .++..|..|.
T Consensus       232 tGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~  265 (432)
T PRK12724        232 TGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence            9999999999999755    333 3456788665

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.17  E-value=5.8e-06  Score=80.42  Aligned_cols=77  Identities=32%  Similarity=0.544  Sum_probs=51.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +|+|+|.|||||||+|+.|+..+   |+.+ ++.+|.+++.+.           .|...       ...+      +...
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-----------~~~~~-------~e~~------~~~~   56 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-----------VWKEK-------YEEF------IRDS   56 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-----------HhhHH-------hHHH------HHHH
Confidence            48999999999999999999988   4543 346788877531           12211       0011      1122


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCcc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPS  262 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pe  262 (473)
                      ....+..++..|..||+|+.+...+
T Consensus        57 ~~~~i~~~l~~~~~VI~D~~~~~~~   81 (249)
T TIGR03574        57 TLYLIKTALKNKYSVIVDDTNYYNS   81 (249)
T ss_pred             HHHHHHHHHhCCCeEEEeccchHHH
Confidence            3345677888899999999875544

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.17  E-value=4.9e-06  Score=90.58  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK  236 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e  236 (473)
                      ..+|.+|+++|+|||||||+|+.++..+|+.+| +.|.+..               |                      .
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~v-n~D~lg~---------------~----------------------~  407 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHV-NADTLGS---------------T----------------------Q  407 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEE-CcHHHHH---------------H----------------------H
Confidence            456889999999999999999999999998875 6666521               0                      1


Q ss_pred             HHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          237 GLAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       237 gL~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      .+...++.+|..|.+||||++++.+..
T Consensus       408 ~~~~~a~~~L~~G~sVVIDaTn~~~~~  434 (526)
T TIGR01663       408 NCLTACERALDQGKRCAIDNTNPDAAS  434 (526)
T ss_pred             HHHHHHHHHHhCCCcEEEECCCCCHHH
Confidence            123346778999999999999999854

Note that the EC number for the kinase function is: 2.7.1.78

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.17  E-value=7.1e-06  Score=71.68  Aligned_cols=31  Identities=45%  Similarity=0.655  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTD  193 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD  193 (473)
                      +|+|+|++||||||+|..||.++|++++ ..|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~-~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYL-DTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcee-ccc
Confidence            5899999999999999999999999987 444

>PRK13948 shikimate kinase; Provisional

Probab=98.17  E-value=1.1e-05  Score=76.36  Aligned_cols=44  Identities=27%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      ...|..|++.|.+||||||+++.||.+||+++| .+|.+.+.+.+
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i-D~D~~ie~~~g   50 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFI-DTDRYIERVTG   50 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-ECCHHHHHHHh
Confidence            456789999999999999999999999999987 67766555443

>PRK00625 shikimate kinase; Provisional

Probab=98.16  E-value=7.7e-06  Score=76.80  Aligned_cols=38  Identities=32%  Similarity=0.539  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      .|+|+|+|||||||+++.||+++|++++..++.+++.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~   39 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence            68999999999999999999999999986655666654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.15  E-value=1.1e-05  Score=82.62  Aligned_cols=100  Identities=21%  Similarity=0.239  Sum_probs=69.3

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG  167 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G  167 (473)
                      =|...|..+||.+..|.+|...+++.+.+....  +.+.+...+.+.|.+. +... ...+.     ...+.|.+|+|+|
T Consensus        51 ~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~-l~~~-~~~~~-----~~~~~~~vi~lvG  121 (318)
T PRK10416         51 ELEELLIEADVGVETTEEIIEELRERVKRKNLK--DPEELKELLKEELAEI-LEPV-EKPLN-----IEEKKPFVILVVG  121 (318)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHH-hCcC-Ccccc-----ccCCCCeEEEEEC
Confidence            367889999999999999999999988765432  3445666666665542 1100 00011     1234688999999


Q ss_pred             CCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994          168 TACVGKSTIATQLAQRL---NLPNV-LQTDMVY  196 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir  196 (473)
                      ++|+||||++..||..+   |..+. +..|..|
T Consensus       122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            99999999999999887   44333 4567765

>PRK13946 shikimate kinase; Provisional

Probab=98.15  E-value=1.5e-05  Score=74.43  Aligned_cols=41  Identities=29%  Similarity=0.365  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .+..|+++|++||||||+++.||++||++++ .+|.+.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i-d~D~~~~~~~   49 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFL-DADTEIERAA   49 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeE-CcCHHHHHHh
Confidence            4568999999999999999999999999986 7776655443

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.12  E-value=8.2e-06  Score=86.70  Aligned_cols=102  Identities=19%  Similarity=0.253  Sum_probs=72.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhccCCCeEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYG-EEYISRYRMMTRFHHQRVPLVILV  165 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yg-e~~a~rY~l~~~~~~~~~P~iIlI  165 (473)
                      +.+.|.++||.+.+.-....+++++.++..+. .++. +.+-..|++-|.+- .| ++    ..+   ....+.|.+|++
T Consensus        34 ir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~l-lG~~~----~~~---~l~~~~P~vImm  105 (451)
T COG0541          34 IRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKL-LGGEN----SEL---NLAKKPPTVILM  105 (451)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH-hCCCC----ccc---ccCCCCCeEEEE
Confidence            57899999999999999999999999998875 2332 33444444433331 11 11    011   012567999999


Q ss_pred             EcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994          166 CGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL  198 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~  198 (473)
                      +|..|+||||++.+||.+|   |.. -++++|++|-.
T Consensus       106 vGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA  142 (451)
T COG0541         106 VGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA  142 (451)
T ss_pred             EeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence            9999999999999999988   443 34588988853

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=3.8e-05  Score=80.86  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT  168 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~  168 (473)
                      |.+.|..+||.+..+.+|..++++.+......  ..+.+...+.+.+.+.         +.....+.....|.+|+++|+
T Consensus       114 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~--~~~~v~~~l~~~l~~~---------i~~~~~~~~~~~~~vi~lvGp  182 (388)
T PRK12723        114 IEDILRENDFSESYIKDINEFIKKEFSLSDLD--DYDKVRDSVIIYIAKT---------IKCSGSIIDNLKKRVFILVGP  182 (388)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcC--CHHHHHHHHHHHHHHH---------hhccCccccCCCCeEEEEECC
Confidence            66889999999999999999998876543322  2344555544444331         110001111245789999999


Q ss_pred             CCCcHHHHHHHHHHhcC-------C-CeEEcchhHHH
Q 011994          169 ACVGKSTIATQLAQRLN-------L-PNVLQTDMVYE  197 (473)
Q Consensus       169 ~GsGKSTlA~~LA~~Lg-------~-~~Vi~tD~ir~  197 (473)
                      +|+||||++.+||.++.       . ..++..|.+|.
T Consensus       183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~  219 (388)
T PRK12723        183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI  219 (388)
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence            99999999999998763       2 22457788764

>TIGR00959 ffh signal recognition particle protein

Probab=98.11  E-value=1e-05  Score=86.09  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |.+.|.++||.+.++..+..++++.+.+..+. .++ .+.+...+++.|.+. .+.. ...+.     ....+|.+|+++
T Consensus        33 i~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~-l~~~-~~~~~-----~~~~~p~vi~~v  105 (428)
T TIGR00959        33 IRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAI-LGGE-NASLN-----LAKKPPTVILMV  105 (428)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHH-hCCC-Ccccc-----cCCCCCEEEEEE
Confidence            77899999999999999999999998876643 333 244555565555441 1111 00011     123568999999


Q ss_pred             cCCCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 011994          167 GTACVGKSTIATQLAQRL----NLP-NVLQTDMVYE  197 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L----g~~-~Vi~tD~ir~  197 (473)
                      |++|+||||++..||..+    |.. .++..|.+|.
T Consensus       106 G~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~  141 (428)
T TIGR00959       106 GLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP  141 (428)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence            999999999999999874    443 3457887764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.11  E-value=1.3e-05  Score=72.67  Aligned_cols=81  Identities=30%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +|+|+|.|||||||+|+.|+..+   |... ++..|.+++.+....        .|..     ++....+        ..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~--------~~~~-----~~~~~~~--------~~   59 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDL--------GFSR-----EDREENI--------RR   59 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhcc--------CCCc-----chHHHHH--------HH
Confidence            47999999999999999999998   6553 357788988654321        1110     1111111        11


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      +...+...++.|..||+++++..+..
T Consensus        60 ~~~~a~~l~~~G~~VIid~~~~~~~~   85 (149)
T cd02027          60 IAEVAKLLADAGLIVIAAFISPYRED   85 (149)
T ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHH
Confidence            22233345678999999999876554

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.10  E-value=1.1e-05  Score=86.10  Aligned_cols=101  Identities=17%  Similarity=0.274  Sum_probs=69.5

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      +.+.|.++||++.++.++..++++.+.+..++ .++ ++.+...|++.|.+. ++... ..      +.....|.+|+|+
T Consensus        30 i~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-l~~~~-~~------~~~~~~p~vI~lv  101 (437)
T PRK00771         30 IQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKL-LGEET-EP------LVLPLKPQTIMLV  101 (437)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHH-hCCCc-cc------cccCCCCeEEEEE
Confidence            67889999999999999999999998876653 222 234455555554431 11110 00      0012468999999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVYE  197 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~  197 (473)
                      |++|+||||++..||..+   |.. .++..|.+|.
T Consensus       102 G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~  136 (437)
T PRK00771        102 GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP  136 (437)
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence            999999999999999877   443 3346777654

>PRK08233 hypothetical protein; Provisional

Probab=98.09  E-value=7.3e-06  Score=74.42  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      ++++|+|.|+|||||||+|..|+..++...++..|.++
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~   39 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD   39 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEE
Confidence            35799999999999999999999999755555666554

>PRK13947 shikimate kinase; Provisional

Probab=98.08  E-value=1.7e-05  Score=71.91  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .|+|.|+|||||||+|+.||++||+++| ..|.+.+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~i-d~d~~~~~   38 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFI-DTDKEIEK   38 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEE-ECchhhhh
Confidence            4899999999999999999999999987 55555444

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.07  E-value=1.4e-05  Score=72.25  Aligned_cols=32  Identities=41%  Similarity=0.531  Sum_probs=27.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      |+|+|++||||||+|+.|+..+|..++ .+|.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v-~~D~~   32 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFI-EGDDL   32 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEE-eCccc
Confidence            578999999999999999999998875 56665

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.07  E-value=2.8e-05  Score=71.99  Aligned_cols=82  Identities=28%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI  233 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~  233 (473)
                      .+|.+|+|+|++|+||||+|+.|+..+   |.. .++..|.+++.|.....            | ..++....+      
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~------------~-~~~~~~~~~------   76 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLG------------F-SEEDRKENI------   76 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccC------------C-CHHHHHHHH------
Confidence            567899999999999999999999887   333 34578888876543111            1 111222222      


Q ss_pred             hHhHHHHHHHHHHhCCCcEEEEcccCC
Q 011994          234 VRKGLAGDLKKAMKDGKPIIIEGIHLD  260 (473)
Q Consensus       234 V~egL~~~IekaL~eG~sVIIEGvhL~  260 (473)
                        ..+.......+..|..||+++++..
T Consensus        77 --~~~~~~~~~~~~~G~~VI~d~~~~~  101 (184)
T TIGR00455        77 --RRIGEVAKLFVRNGIIVITSFISPY  101 (184)
T ss_pred             --HHHHHHHHHHHcCCCEEEEecCCCC
Confidence              1233344456789999999987554

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK08356 hypothetical protein; Provisional

Probab=98.06  E-value=1.4e-05  Score=75.20  Aligned_cols=41  Identities=24%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      .++|+|+|+|||||||+|..|+ .+|+.++..+|.++..++.
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~   45 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTH   45 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccc
Confidence            3689999999999999999996 5899988778877665443

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.03  E-value=1.2e-05  Score=73.89  Aligned_cols=43  Identities=40%  Similarity=0.459  Sum_probs=34.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC----CeEEcchhHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNL----PNVLQTDMVYELL  199 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~----~~Vi~tD~ir~~L  199 (473)
                      ..+|.+|+|+|++||||||+|+.|+.+++.    ..++.+|.+++.+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~   50 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL   50 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc
Confidence            346889999999999999999999999851    2345678888754

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=3.5e-05  Score=82.85  Aligned_cols=104  Identities=18%  Similarity=0.205  Sum_probs=75.3

Q ss_pred             HHHHcCCChHHHHHHHHHHHHHHhhcCccccc--HHHHHHHHHHHHHhcCCChhhHHHHHH---HHHhhccCCCeEEEEE
Q 011994           92 MLTVTKIPNHVAIKIALELKKLLVDNSLLDVS--QSDLEANLFKLMERRGYGEEYISRYRM---MTRFHHQRVPLVILVC  166 (473)
Q Consensus        92 ~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~--~~eLe~~v~~lL~~~~yge~~a~rY~l---~~~~~~~~~P~iIlI~  166 (473)
                      -|+.--|+++.|..++..+...|.++.+...+  ...+++++.+.|.+- .-+  ..+.+|   +...++.++|.+|.|+
T Consensus       308 hLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQI-LTP--~~sVDlLRdI~sar~~krPYVi~fv  384 (587)
T KOG0781|consen  308 HLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQI-LTP--QRSVDLLRDIMSARRRKRPYVISFV  384 (587)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH-cCC--CchhhHHHHHHHHHhcCCCeEEEEE
Confidence            35556889999999999999999999887665  444555555554442 111  012334   3344567789999999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLPNVL-QTDMVYEL  198 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~~  198 (473)
                      |.+|+||||--.++|.-|   ++.+++ +.|++|..
T Consensus       385 GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsG  420 (587)
T KOG0781|consen  385 GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSG  420 (587)
T ss_pred             eecCccccchHHHHHHHHHhCCceEEEEeccchhhh
Confidence            999999999999999988   677665 46999853

>PRK13949 shikimate kinase; Provisional

Probab=97.99  E-value=2.2e-05  Score=72.97  Aligned_cols=35  Identities=31%  Similarity=0.486  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      .|+|.|+|||||||+++.||..+|++++ .+|.+.+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~i-d~D~~i~   37 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFI-DLDFFIE   37 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCee-cccHHHH
Confidence            5899999999999999999999999986 5655443

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.97  E-value=2.3e-05  Score=73.13  Aligned_cols=42  Identities=31%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~Lr  200 (473)
                      +|.+|+|+|.|||||||+|+.|..+|   |... ++..|.+|+.+.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~   46 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN   46 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC
Confidence            47899999999999999999999998   5554 456788887643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=2.3e-05  Score=82.44  Aligned_cols=100  Identities=20%  Similarity=0.272  Sum_probs=73.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCc------ccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSL------LDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV  162 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v------~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~i  162 (473)
                      +.+.|.++||.+....++...+++.+...+.      ..+.+..+.+.+..++.. +-.+     |.     ...++|-+
T Consensus        35 I~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp-~~~~-----~~-----~~K~kpsV  103 (483)
T KOG0780|consen   35 ICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDP-GKSA-----LQ-----PKKGKPSV  103 (483)
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCC-CCcc-----cc-----cccCCCcE
Confidence            6788999999999999999999988765544      244455555555555533 1111     11     24568999


Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELL  199 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~L  199 (473)
                      |+|+|.+|+||||.+.+||.++   |+.. ++..|++|...
T Consensus       104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA  144 (483)
T KOG0780|consen  104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA  144 (483)
T ss_pred             EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence            9999999999999999999988   5543 34789998754

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.96  E-value=5e-05  Score=67.17  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=30.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      |+|+|+|||||||+|+.||..+|++++ ..|.+.+.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~-~~d~~~~~   36 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFV-DLDELIEQ   36 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEE-EchHHHHH
Confidence            789999999999999999999999986 55555443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.95  E-value=1e-05  Score=86.97  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=61.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhhCCCCCC----CCCccccccc--cChHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPL----SSSPVWARNF--SSSEELVTEFVR  229 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr~~~s~pL----~~~~~W~~~y--~s~EelI~gf~~  229 (473)
                      +++.+|+|+|++|||||+||..||.+++... ++.|.  +++.|.-.+..+-    ...+.+.-.+  +...-.+..|..
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~ei-i~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~   98 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEI-INADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRD   98 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeE-EcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHH
Confidence            4567999999999999999999999999885 58885  5555432111110    0011111111  111223556666


Q ss_pred             cchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccc
Q 011994          230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLM  266 (473)
Q Consensus       230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~  266 (473)
                      .+..+++.+..      +...||||.|+++.-.-++.
T Consensus        99 ~A~~~I~~I~~------rgk~PIlVGGTglYi~aLl~  129 (468)
T PLN02748         99 HAVPLIEEILS------RNGLPVIVGGTNYYIQALVS  129 (468)
T ss_pred             HHHHHHHHHHh------cCCCeEEEcChHHHHHHHHc
Confidence            55444433322      34568999999987666554

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.91  E-value=6.2e-06  Score=78.14  Aligned_cols=38  Identities=34%  Similarity=0.427  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +.|+++|++|+||||+++.||+.||++++..+..+.+.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~   40 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR   40 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH
Confidence            46899999999999999999999999997554455554

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.89  E-value=5.6e-05  Score=71.56  Aligned_cols=95  Identities=22%  Similarity=0.359  Sum_probs=51.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA  239 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~  239 (473)
                      .||++-|+|.|||||+|+.|...+.-+++ ++-|.+++.|......+. ..-.|....+..+...       ..++.+..
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~-------~~~~~~~~   73 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPG-DGLEPAGDRPDGGPLF-------RRLYAAMH   73 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTST-TSEEEETTSEEE-HHH-------HHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCC-ccccccccCCchhHHH-------HHHHHHHH
Confidence            48999999999999999999999988754 467999887653211100 0111221111111111       12223344


Q ss_pred             HHHHHHHhCCCcEEEEcccCCccc
Q 011994          240 GDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       240 ~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      ..+....+.|..||+|.+++.|..
T Consensus        74 ~~iaa~a~aG~~VIvD~v~~~~~~   97 (174)
T PF07931_consen   74 AAIAAMARAGNNVIVDDVFLGPRW   97 (174)
T ss_dssp             HHHHHHHHTT-EEEEEE--TTTHH
T ss_pred             HHHHHHHhCCCCEEEecCccCcHH
Confidence            445555677777777777776653

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.89  E-value=7e-05  Score=71.90  Aligned_cols=45  Identities=33%  Similarity=0.344  Sum_probs=38.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CC-CeEEcchhHHHHHhh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NL-PNVLQTDMVYELLRT  201 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~-~~Vi~tD~ir~~Lr~  201 (473)
                      ..+|.+|+|+|.||+||||+|..|.++|   |+ .+++-+|.+|+.|..
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~   68 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR   68 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence            4568999999999999999999999988   55 455678999998764

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.87  E-value=3.5e-05  Score=72.73  Aligned_cols=83  Identities=29%  Similarity=0.456  Sum_probs=59.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH----HHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY----ELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVR  235 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir----~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~  235 (473)
                      +-+|+++|++||||||++..|+.+||++++..+|+.-    +.|+.  +.||.+.+.|.            |       .
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~--GipLnD~DR~p------------W-------L   70 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQ--GIPLNDDDRWP------------W-------L   70 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhc--CCCCCcccccH------------H-------H
Confidence            4589999999999999999999999999987666543    33433  34554443331            1       1


Q ss_pred             hHHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          236 KGLAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       236 egL~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      ..+...+.+.+..|+-+|+-+.-|.-.+
T Consensus        71 ~~i~~~~~~~l~~~q~vVlACSaLKk~Y   98 (191)
T KOG3354|consen   71 KKIAVELRKALASGQGVVLACSALKKKY   98 (191)
T ss_pred             HHHHHHHHHHhhcCCeEEEEhHHHHHHH
Confidence            2355566677778999999888876655

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.87  E-value=9.3e-05  Score=81.35  Aligned_cols=44  Identities=30%  Similarity=0.392  Sum_probs=37.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC-----CeEEcchhHHHHHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNL-----PNVLQTDMVYELLR  200 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~-----~~Vi~tD~ir~~Lr  200 (473)
                      .++|.+|+|+|.+||||||+|+.|+.+|+.     ..++.+|.+|+.|.
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~  437 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS  437 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc
Confidence            346889999999999999999999999986     24568899988664

>TIGR00017 cmk cytidylate kinase

Probab=97.86  E-value=9.1e-05  Score=71.88  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=33.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +++|.|.|++||||||+++.|+.++|+.++..++.+|..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            578999999999999999999999999987655565543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.86  E-value=8.6e-05  Score=67.61  Aligned_cols=38  Identities=29%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .|+|+|++||||||+|+.||.++|++++ ..|.+.+...
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~-d~D~~~~~~~   41 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFV-DTDQWLQSTS   41 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEE-EccHHHHHHh
Confidence            5788999999999999999999999986 6777666543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.83  E-value=5.7e-05  Score=64.07  Aligned_cols=22  Identities=50%  Similarity=0.681  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 011994          163 ILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      |+|+|++||||||+|+.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998

...

>PRK06547 hypothetical protein; Provisional

Probab=97.78  E-value=3.6e-05  Score=72.18  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=33.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      ...|++|+|.|++||||||+|..|++.+++.++ +.|.++
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~-~~d~~~   50 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLV-HLDDLY   50 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCee-ccccee
Confidence            466889999999999999999999999999875 555554

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.78  E-value=0.00015  Score=67.39  Aligned_cols=38  Identities=39%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +..|+|.|++|+||||+++.||..+|++++ .+|...+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~v-d~D~~i~~   41 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY-DSDQEIEK   41 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEE-ECCchHHH
Confidence            457999999999999999999999999986 55654443

>COG4639 Predicted kinase [General function prediction only]

Probab=97.76  E-value=9.8e-05  Score=69.51  Aligned_cols=83  Identities=27%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA  239 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~  239 (473)
                      +.+++++|+|||||||+|+..  -+... +++.|.+|..+....+...+ ...                  .+.+.+.+.
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~-~lsld~~r~~lg~~~~~e~s-qk~------------------~~~~~~~l~   59 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNY-VLSLDDLRLLLGVSASKENS-QKN------------------DELVWDILY   59 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcc-eecHHHHHHHhhhchhhhhc-ccc------------------HHHHHHHHH
Confidence            468999999999999999854  23444 56878888865321111110 011                  112445667


Q ss_pred             HHHHHHHhCCCcEEEEcccCCcccc
Q 011994          240 GDLKKAMKDGKPIIIEGIHLDPSIY  264 (473)
Q Consensus       240 ~~IekaL~eG~sVIIEGvhL~Pel~  264 (473)
                      ..++..|+.|+..|||++++.|+.-
T Consensus        60 ~~l~qrl~~Gk~tiidAtn~rr~~r   84 (168)
T COG4639          60 KQLEQRLRRGKFTIIDATNLRREDR   84 (168)
T ss_pred             HHHHHHHHcCCeEEEEcccCCHHHH
Confidence            7888899999999999999999764

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.76  E-value=9.9e-05  Score=67.70  Aligned_cols=42  Identities=36%  Similarity=0.491  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~Lr  200 (473)
                      ++.+|+|+|+||+||||+|+.|+..+   |.. .++.+|.+++.+.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~   48 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS   48 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh
Confidence            45699999999999999999999988   322 2357888887654

>PRK06696 uridine kinase; Validated

Probab=97.70  E-value=4.8e-05  Score=73.11  Aligned_cols=40  Identities=28%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY  196 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir  196 (473)
                      ...|.+|.|.|++||||||+|..|+..|   |.+++. +.|.++
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            4578999999999999999999999999   666553 455554

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.69  E-value=3.7e-05  Score=73.25  Aligned_cols=37  Identities=27%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ++|+|+|+||+||||++.+|+ .+|+.++...|++++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~   37 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN   37 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence            479999999999999999999 9999998878888764

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.68  E-value=0.00014  Score=72.95  Aligned_cols=93  Identities=20%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG  167 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G  167 (473)
                      -|-+.|...|++...+.+|..+++..        ...+.+...+.+.|.+. +..      . .........+.+|+|+|
T Consensus       138 ~l~~~L~~~gv~~~la~~L~~~l~~~--------~~~~~~~~~~~~~l~~~-l~~------~-~~~~~~~~~~~vi~~vG  201 (282)
T TIGR03499       138 KLLERLLRAGVSPELARELLEKLPER--------ADAEDAWRWLREALEKM-LPV------K-PEEDEILEQGGVIALVG  201 (282)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHhhcc--------CCHHHHHHHHHHHHHHH-hcc------C-CccccccCCCeEEEEEC
Confidence            45577888888888888888877642        12233444455544431 100      0 00000123567999999


Q ss_pred             CCCCcHHHHHHHHHHhc----C-CC-eEEcchhHH
Q 011994          168 TACVGKSTIATQLAQRL----N-LP-NVLQTDMVY  196 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L----g-~~-~Vi~tD~ir  196 (473)
                      ++|+||||++..||..+    | .. .++..|..|
T Consensus       202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            99999999999999876    3 33 234667654

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=0.00021  Score=76.06  Aligned_cols=104  Identities=16%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             ccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCC
Q 011994           80 HYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRV  159 (473)
Q Consensus        80 h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~  159 (473)
                      ..+|+--.-+.+.|...||.+..+.+|...+...+...+  .++..++...+.+.+... +        ... .. ....
T Consensus       174 ~~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~-l--------~~~-~~-~~~~  240 (436)
T PRK11889        174 ESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT--MITEEEVIEYILEDMRSH-F--------NTE-NV-FEKE  240 (436)
T ss_pred             cccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccc--cCCHHHHHHHHHHHHHHH-h--------ccc-cc-cccC
Confidence            456766667889999999999999999998886554432  334456666666655432 1        100 00 1235


Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY  196 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir  196 (473)
                      |.+|+|+|++|+||||++..||..+   |... ++.+|..|
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            7899999999999999999999877   3332 45778776

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.67  E-value=0.00051  Score=69.76  Aligned_cols=41  Identities=32%  Similarity=0.324  Sum_probs=34.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ..++..|+|+|++||||||+++.||.+||+++| ..|...+.
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-d~D~~i~~  170 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-ELNREIER  170 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-eHHHHHHH
Confidence            445679999999999999999999999999987 55544443

>PLN02840 tRNA dimethylallyltransferase

Probab=97.65  E-value=6.3e-05  Score=80.09  Aligned_cols=104  Identities=27%  Similarity=0.397  Sum_probs=59.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhhCCCCCC----CCCccccccc--cChHHHHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPL----SSSPVWARNF--SSSEELVTEFV  228 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr~~~s~pL----~~~~~W~~~y--~s~EelI~gf~  228 (473)
                      ..++.+|+|+|++||||||+|..||.+++... ++.|.  ++..|.-....|.    ...+.+.-++  +..+--+..|.
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~i-is~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~   96 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEI-ISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF   96 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCe-EeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence            34566899999999999999999999999875 46675  3444432111111    0011111111  11112244554


Q ss_pred             hcchhhHhHHHHHHHHHHhCC-CcEEEEcccCCcccccccc
Q 011994          229 RECRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDPSIYLMDD  268 (473)
Q Consensus       229 ~q~~~V~egL~~~IekaL~eG-~sVIIEGvhL~Pel~l~~~  268 (473)
                      ..+..       .++.....| .|||+.|+++.-.-++.+.
T Consensus        97 ~~A~~-------~I~~i~~rgkiPIvVGGTGlYl~aLl~G~  130 (421)
T PLN02840         97 DDARR-------ATQDILNRGRVPIVAGGTGLYLRWYIYGK  130 (421)
T ss_pred             HHHHH-------HHHHHHhcCCCEEEEcCccHHHHHHhcCC
Confidence            44333       333334455 5799999998776665543

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.63  E-value=0.00019  Score=73.49  Aligned_cols=41  Identities=37%  Similarity=0.573  Sum_probs=34.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr  200 (473)
                      +|.+|+|+|++|||||++|..||+.++... ++.|.  ++..|.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~i-is~Ds~Qvy~~l~   45 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEI-ISADSMQVYRGMD   45 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcE-Eeccccceeeccc
Confidence            467999999999999999999999999875 57777  455544

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.62  E-value=0.00013  Score=80.70  Aligned_cols=82  Identities=26%  Similarity=0.271  Sum_probs=54.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIV  234 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V  234 (473)
                      +|.+|+++|.|||||||+|+.|+.+|+   .. .++..|.+|+.+...    .        .| +.++....|.      
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~----~--------~~-~~~~r~~~~~------  519 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD----L--------GF-SDADRVENIR------  519 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC----C--------CC-CHHHHHHHHH------
Confidence            589999999999999999999999973   32 446889999865321    1        01 1222333332      


Q ss_pred             HhHHHHHHHHHHhCCCcEEEEcccCCc
Q 011994          235 RKGLAGDLKKAMKDGKPIIIEGIHLDP  261 (473)
Q Consensus       235 ~egL~~~IekaL~eG~sVIIEGvhL~P  261 (473)
                        .+.......+..|..||++++++..
T Consensus       520 --~l~~~a~~~~~~G~~Vivda~~~~~  544 (632)
T PRK05506        520 --RVAEVARLMADAGLIVLVSFISPFR  544 (632)
T ss_pred             --HHHHHHHHHHhCCCEEEEECCCCCH
Confidence              2333444456889999999865443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.62  E-value=4.8e-05  Score=70.94  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+|+|.|++||||||+++.|+..++..+++
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~   32 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV   32 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence            478999999999999999999888765443

>PLN02199 shikimate kinase

Probab=97.62  E-value=0.00041  Score=71.13  Aligned_cols=41  Identities=12%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ...|+|.|.+||||||+++.||..+|+++|..++.+.+.+.
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~  142 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN  142 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc
Confidence            34789999999999999999999999998744444555433

>PLN02165 adenylate isopentenyltransferase

Probab=97.61  E-value=0.00013  Score=75.73  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      .+..+|+|.|++||||||+|..||..+|... ++.|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eI-IsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEI-INSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCce-ecCChh
Confidence            3455899999999999999999999999875 477766

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.53  E-value=8.2e-05  Score=63.33  Aligned_cols=27  Identities=44%  Similarity=0.660  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      |+|.|+||+||||+++.||..++.+++
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~   27 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFI   27 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccc
Confidence            689999999999999999999998764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.50  E-value=0.00012  Score=68.03  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +|.|+|.+||||||++..|++ +|++++..++.+++.+.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~   38 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE   38 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence            489999999999999999998 99998755555555543

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.47  E-value=0.00023  Score=65.10  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      .+|+|.|++||||||++..|+..++...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~   29 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLK   29 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCcccc
Confidence            3799999999999999999998775433

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13973 thymidylate kinase; Provisional

Probab=97.46  E-value=0.00083  Score=64.34  Aligned_cols=86  Identities=17%  Similarity=0.198  Sum_probs=52.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFV  228 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~  228 (473)
                      .+.|.|-|..||||||++..|++.|   |+.++..        .+.+|+.+......          .+ ++.....-|.
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~----------~~-~~~~~~ll~~   71 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAE----------LY-GPRMEALLFA   71 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCcc----------CC-CHHHHHHHHH
Confidence            4689999999999999999999999   8876643        45566554331110          01 0111111121


Q ss_pred             hcchhhHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994          229 RECRIVRKGLAGDLKKAMKDGKPIIIEGIHL  259 (473)
Q Consensus       229 ~q~~~V~egL~~~IekaL~eG~sVIIEGvhL  259 (473)
                      .   .-.+-+...+..++..|..||.|....
T Consensus        72 a---~r~~~~~~~i~~~l~~g~~Vi~DRy~~   99 (213)
T PRK13973         72 A---ARDDHVEEVIRPALARGKIVLCDRFID   99 (213)
T ss_pred             H---HHHHHHHHHHHHHHHCCCEEEEcchhh
Confidence            1   111223455778899999899888543

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.45  E-value=0.00033  Score=70.37  Aligned_cols=79  Identities=24%  Similarity=0.438  Sum_probs=42.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +|+|+|.|||||||+|..|+..+   +...++ +.|.+. . ...        . |..  ...+..+          ...
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-~-~~~--------~-y~~--~~~Ek~~----------R~~   59 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-I-DRN--------D-YAD--SKKEKEA----------RGS   59 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS--------S-S----GGGHHHH----------HHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-c-chh--------h-hhc--hhhhHHH----------HHH
Confidence            68999999999999999999986   455443 444444 1 110        0 111  0112222          233


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      +...+++.+....-||+|+.+...++
T Consensus        60 l~s~v~r~ls~~~iVI~Dd~nYiKg~   85 (270)
T PF08433_consen   60 LKSAVERALSKDTIVILDDNNYIKGM   85 (270)
T ss_dssp             HHHHHHHHHTT-SEEEE-S---SHHH
T ss_pred             HHHHHHHhhccCeEEEEeCCchHHHH
Confidence            56677788888888999999966544

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.44  E-value=0.00037  Score=74.14  Aligned_cols=93  Identities=18%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT  168 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~  168 (473)
                      |.+.|...||++..|.+|..++.........      .+...+.+.|.+. +...   ...+   +   ....+|+|.|+
T Consensus       166 ~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~L~~~-l~~~---~~~~---~---~~~~~i~~vGp  229 (424)
T PRK05703        166 LYKRLKRSGLSPEIAEKLLKLLLEHMPPRER------TAWRYLLELLANM-IPVR---VEDI---L---KQGGVVALVGP  229 (424)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHH-hCcc---cccc---c---cCCcEEEEECC
Confidence            5578889999999999999988776543221      2344444444331 1000   0011   1   12358999999


Q ss_pred             CCCcHHHHHHHHHHhc-----CCC-eEEcchhHHH
Q 011994          169 ACVGKSTIATQLAQRL-----NLP-NVLQTDMVYE  197 (473)
Q Consensus       169 ~GsGKSTlA~~LA~~L-----g~~-~Vi~tD~ir~  197 (473)
                      +|+||||++..||.++     |.. .++..|..|-
T Consensus       230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI  264 (424)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence            9999999999998765     222 2346777653

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.44  E-value=0.00018  Score=68.44  Aligned_cols=40  Identities=30%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ++|.|+|++||||||++..|+..+|++++..++..++.+.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~   41 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA   41 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence            4799999999999999999999889998754445455443

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.43  E-value=0.00058  Score=64.41  Aligned_cols=43  Identities=30%  Similarity=0.343  Sum_probs=34.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR  200 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~Lr  200 (473)
                      .+|.+|+|+|.+||||||+|+.|+..+   |.. .++..|.+++.+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~   68 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC   68 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh
Confidence            468899999999999999999999987   332 3446788886544

>PLN02842 nucleotide kinase

Probab=97.42  E-value=0.00041  Score=75.51  Aligned_cols=37  Identities=16%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             EEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          164 LVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       164 lI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ||.|+|||||||+|+.|++++|+.++..+|.++..+.
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~   37 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVS   37 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhc
Confidence            5899999999999999999999999877888887653

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.42  E-value=0.00017  Score=70.21  Aligned_cols=38  Identities=32%  Similarity=0.387  Sum_probs=33.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +++|.|.|++||||||+|+.||+++|++++..++.+|.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            57999999999999999999999999999866666665

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.00031  Score=65.80  Aligned_cols=46  Identities=28%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             EcCCCCcHHHHHHHHHHhcCCCeEEcchhH-HHHHh-hCCCCCCCCCc
Q 011994          166 CGTACVGKSTIATQLAQRLNLPNVLQTDMV-YELLR-TSTDAPLSSSP  211 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i-r~~Lr-~~~s~pL~~~~  211 (473)
                      +|.+||||||++..||.+||+.++..+|+. ++... +..+.||.+..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdD   48 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDD   48 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcch
Confidence            599999999999999999999997666544 23322 23345665443

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.41  E-value=0.00023  Score=67.36  Aligned_cols=40  Identities=30%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +.+|.|+|++||||||++..|+. +|++++..++.+++.+.
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~   41 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVE   41 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhh
Confidence            46899999999999999999998 99997655555555543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.41  E-value=0.00055  Score=74.17  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC  166 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~  166 (473)
                      -|...|..+||.+..|.+|...++.....        ++..+.+...|.+.         +....... ...++.+|+|+
T Consensus       200 ~l~~~Ll~~dv~~~la~~l~~~l~~~~~~--------~~~~~~l~~~l~~~---------l~~~~~~~~~~~~g~Vi~Lv  262 (484)
T PRK06995        200 ALLKHLLAAGFSAQLVRMLVDNLPEGDDA--------EAALDWVQSALAKN---------LPVLDSEDALLDRGGVFALM  262 (484)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHhhhch--------hHHHHHHHHHHHHH---------HhhccCccccccCCcEEEEE
Confidence            35577888999999999999888766322        12333333333321         11100000 11245799999


Q ss_pred             cCCCCcHHHHHHHHHHhc
Q 011994          167 GTACVGKSTIATQLAQRL  184 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L  184 (473)
                      |++|+||||++.+||..+
T Consensus       263 GpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        263 GPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CCCCccHHHHHHHHHHHH
Confidence            999999999999999766

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.41  E-value=0.00031  Score=71.87  Aligned_cols=100  Identities=16%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH--HHHhhCCCCCC----CCCcccccccc--ChHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY--ELLRTSTDAPL----SSSPVWARNFS--SSEELVTEFVRE  230 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir--~~Lr~~~s~pL----~~~~~W~~~y~--s~EelI~gf~~q  230 (473)
                      .+.+|+|+||.|||||.||-.||.+.|  -|++.|.+.  +.|.-.+..|-    ...+.+.-++-  ...--+..|...
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~~~--eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~   80 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKGKA--EIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE   80 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC--cEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence            345899999999999999999999943  567888764  33321111111    00111110111  111123445443


Q ss_pred             chhhHhHHHHHHHHHHhCC-CcEEEEcccCCccccccc
Q 011994          231 CRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDPSIYLMD  267 (473)
Q Consensus       231 ~~~V~egL~~~IekaL~eG-~sVIIEGvhL~Pel~l~~  267 (473)
                      +..       .|+.....| .|||+.|+++.-.-++.+
T Consensus        81 a~~-------~i~~i~~~gk~PilvGGTglYi~all~g  111 (300)
T PRK14729         81 ALK-------IIKELRQQKKIPIFVGGSAFYFKHLKYG  111 (300)
T ss_pred             HHH-------HHHHHHHCCCCEEEEeCchHHHHHHHcC
Confidence            332       233333445 579999999876665543

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.00061  Score=70.03  Aligned_cols=102  Identities=25%  Similarity=0.356  Sum_probs=60.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHhhCCCCCCC----CCccccccccCh--HHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLRTSTDAPLS----SSPVWARNFSSS--EELVTEFVRE  230 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i--r~~Lr~~~s~pL~----~~~~W~~~y~s~--EelI~gf~~q  230 (473)
                      .|.+|+|+||.|||||-+|-.||+++|... ++.|.+  ++.|.-.+..|..    ..+...-++-++  .--+..|..+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eI-Is~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~   80 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEI-ISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD   80 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcE-EecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHH
Confidence            467999999999999999999999999985 588866  3444322222210    111110011001  1123344332


Q ss_pred             chhhHhHHHHHHHHHHhCC-CcEEEEcccCCcccccccc
Q 011994          231 CRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDPSIYLMDD  268 (473)
Q Consensus       231 ~~~V~egL~~~IekaL~eG-~sVIIEGvhL~Pel~l~~~  268 (473)
                             ....++....+| .||||.|+.+.-.-++.++
T Consensus        81 -------a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~  112 (308)
T COG0324          81 -------ALAAIDDILARGKLPILVGGTGLYLKALLEGL  112 (308)
T ss_pred             -------HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCC
Confidence                   334555566777 6788999887655544433

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.37  E-value=0.00031  Score=73.56  Aligned_cols=96  Identities=20%  Similarity=0.313  Sum_probs=56.7

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHhhc-----cCCCeE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE-YISRYRMMTRFHH-----QRVPLV  162 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~-~a~rY~l~~~~~~-----~~~P~i  162 (473)
                      |..+|..+.-.|.++..++.++..++...++.++...-=.-.-+......-||-. .+.  .++..+..     ..+..+
T Consensus         3 ~~eyL~~~~~~p~~~~~a~qr~~dmI~~~g~~~~~~~~~~~~~y~~F~~~~~G~~~~i~--~lv~~l~~~a~g~~~~r~i   80 (361)
T smart00763        3 LAEYLDIVKEDPLVAANAHQRLLDMIGEAGVEDVVENNRGIKRYRFFDHDFFGMEEAIE--RFVNYFKSAAQGLEERKQI   80 (361)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHHHHhccCcEEeccCCcceeeccccchhccCcHHHHH--HHHHHHHHHHhcCCCCCcE
Confidence            5677888877888888888888888877766543210000000111111112211 011  12222221     223468


Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ++|+||||+||||+|..|+..++.
T Consensus        81 l~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       81 LYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999964

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.36  E-value=0.00025  Score=72.07  Aligned_cols=98  Identities=27%  Similarity=0.394  Sum_probs=56.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhhCCCCCCC----CCccccccccChHH--HHHHHHhcchh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPLS----SSPVWARNFSSSEE--LVTEFVRECRI  233 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr~~~s~pL~----~~~~W~~~y~s~Ee--lI~gf~~q~~~  233 (473)
                      +|+|+|++|||||++|..|++.++... ++.|.  +++.|.-....|..    ..+.+--++-++.+  -+..|...   
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~i-is~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~---   76 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEI-ISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTL---   76 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcE-EEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHH---
Confidence            489999999999999999999999885 57776  34544322222211    01111101111111  12333332   


Q ss_pred             hHhHHHHHHHHHHhCCC-cEEEEcccCCccccccc
Q 011994          234 VRKGLAGDLKKAMKDGK-PIIIEGIHLDPSIYLMD  267 (473)
Q Consensus       234 V~egL~~~IekaL~eG~-sVIIEGvhL~Pel~l~~  267 (473)
                          ....|+.....|+ +||+.|+++.-.-++.+
T Consensus        77 ----a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g  107 (287)
T TIGR00174        77 ----ALNAIADITARGKIPLLVGGTGLYLKALLEG  107 (287)
T ss_pred             ----HHHHHHHHHhCCCCEEEEcCcHHHHHHHHcC
Confidence                2334455556665 78899998876665553

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.34  E-value=0.00022  Score=67.39  Aligned_cols=39  Identities=28%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMVY  196 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~ir  196 (473)
                      .+|.+|.|+|++||||||++..|+..++.  ..++..|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~   44 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY   44 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence            46889999999999999999999999842  2234555543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.33  E-value=0.00046  Score=63.27  Aligned_cols=25  Identities=32%  Similarity=0.399  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +|+|+|+|||||||++..|+..++.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            7899999999999999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.33  E-value=0.0015  Score=59.59  Aligned_cols=29  Identities=34%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNV  189 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V  189 (473)
                      ++|.|.|++||||||+++.|+..+   |..++
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~   32 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVV   32 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            479999999999999999999998   65544

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK05439 pantothenate kinase; Provisional

Probab=97.31  E-value=0.00061  Score=70.03  Aligned_cols=49  Identities=33%  Similarity=0.455  Sum_probs=36.1

Q ss_pred             HHHHHHhh---ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC------CeEEcchhHH
Q 011994          148 YRMMTRFH---HQRVPLVILVCGTACVGKSTIATQLAQRLNL------PNVLQTDMVY  196 (473)
Q Consensus       148 Y~l~~~~~---~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~------~~Vi~tD~ir  196 (473)
                      ......|.   ..+.|.+|.|+|+|||||||+|..|+..++-      ..++..|.+.
T Consensus        71 ~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         71 QAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             HHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            34455554   4567999999999999999999999987742      2345666554

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.31  E-value=0.00035  Score=67.52  Aligned_cols=40  Identities=35%  Similarity=0.472  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .++|.++|.+||||||+|+.+++ +|++.|.+++.+|+...
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~   41 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVE   41 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHh
Confidence            47999999999999999999998 99999988888886544

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.30  E-value=0.001  Score=71.98  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +.|+|+|++||||||+++.||+.+|++++ .+|.+.+.
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~i-d~D~~i~~   37 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFI-DMDEEIER   37 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEE-ECcHHHHH
Confidence            36899999999999999999999999987 55555544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.29  E-value=0.00024  Score=58.69  Aligned_cols=28  Identities=43%  Similarity=0.604  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +..++|.|+||+||||++..|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            3579999999999999999999999765

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.26  E-value=0.00058  Score=72.41  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=66.3

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCC
Q 011994           90 SRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTA  169 (473)
Q Consensus        90 sR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~  169 (473)
                      -++|...||....+.+|..++...+.......  .+++.+.+...|... ...      .  ..+ ....+.+|+|+|++
T Consensus       148 ~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~--~~~v~~~~~~~L~~~-l~~------~--~~~-~~~~~~ii~lvGpt  215 (407)
T PRK12726        148 VKFLKGRGISDTYVADFMQAGRKQFKQVETAH--LDDITDWFVPYLSGK-LAV------E--DSF-DLSNHRIISLIGQT  215 (407)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhcccccccc--HHHHHHHHHHHhcCc-Eee------C--CCc-eecCCeEEEEECCC
Confidence            78899999999999999999877655433222  356777777776652 100      0  001 12346799999999


Q ss_pred             CCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 011994          170 CVGKSTIATQLAQRL---NLP-NVLQTDMVYE  197 (473)
Q Consensus       170 GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~  197 (473)
                      |+||||++..||..+   |.. .++.+|..|-
T Consensus       216 GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        216 GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            999999999999866   433 2457787753

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.26  E-value=0.00063  Score=67.42  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ...++|.||||+||||+|..+|..+|..+.
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            447999999999999999999999997754

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.24  E-value=0.00027  Score=76.99  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=34.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      .+|++|.|.|++||||||+|+.||++||+.++..++++|.
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~  321 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA  321 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehH
Confidence            4678999999999999999999999999987655555565

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.23  E-value=0.00045  Score=66.87  Aligned_cols=42  Identities=29%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      ..|++|.|+|..||||||+++.|+..+|++++..+...++.+
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~   45 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREIT   45 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHH
Confidence            457899999999999999999999999999764444444443

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.22  E-value=0.0014  Score=71.76  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .|++.|.+||||||+++.||++||+++|..++.+.+.
T Consensus         8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~   44 (542)
T PRK14021          8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE   44 (542)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH
Confidence            6888999999999999999999999997555555554

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.22  E-value=0.00034  Score=74.16  Aligned_cols=109  Identities=19%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--c-ch---hHHHHHhhCCCCCCCCCccccccccChHHH
Q 011994          150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL--Q-TD---MVYELLRTSTDAPLSSSPVWARNFSSSEEL  223 (473)
Q Consensus       150 l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi--~-tD---~ir~~Lr~~~s~pL~~~~~W~~~y~s~Eel  223 (473)
                      ..+++.+.......++.||||+||||+|+.||...+..++-  + ++   .+|+.+...... +. .  ..+        
T Consensus        38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~-~~-~--gr~--------  105 (436)
T COG2256          38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKN-RL-L--GRR--------  105 (436)
T ss_pred             hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHH-Hh-c--CCc--------
Confidence            34555566666678999999999999999999999877653  1 12   222222110000 00 0  000        


Q ss_pred             HHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccC
Q 011994          224 VTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDS  270 (473)
Q Consensus       224 I~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~  270 (473)
                      .--|.+..+..-+..++.+...+++|.-+.|.++.-+|.|.+-....
T Consensus       106 tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALl  152 (436)
T COG2256         106 TILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALL  152 (436)
T ss_pred             eEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence            00122233333445667777888999999999999999998654433

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.20  E-value=0.00022  Score=68.24  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYE  197 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~  197 (473)
                      |.+|+++|++|+||||++.+||.++.   .. -+++.|.+|-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence            78999999999999999999999883   32 2346787763

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR00152 dephospho-CoA kinase

Probab=97.19  E-value=0.00046  Score=64.34  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +|.|+|.+||||||++..|+...|++++..++..++.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~   39 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVE   39 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHh
Confidence            489999999999999999998877998755555566554

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.18  E-value=0.00035  Score=68.61  Aligned_cols=41  Identities=27%  Similarity=0.423  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMVYEL  198 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~ir~~  198 (473)
                      .++.+|.|+|.+||||||+|+.|...++.  ..+++.|.+++.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~   48 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD   48 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence            34589999999999999999999999984  456677777763

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.18  E-value=0.0013  Score=74.85  Aligned_cols=91  Identities=20%  Similarity=0.146  Sum_probs=58.7

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG  167 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~G  167 (473)
                      |-+.|..+||.+..+.+|..++++.        .+.+++...+.+.|.+.         +.+..... .-..+.+|+|+|
T Consensus       130 l~~~Ll~~dv~~~la~~l~~~l~~~--------~~~~~~~~~l~~~L~~~---------l~il~~~~~~~~~g~Vi~lVG  192 (767)
T PRK14723        130 LFRWLLGAGFSGQLARALLERLPVG--------YDRPAAMAWIRNELATH---------LPVLRDEDALLAQGGVLALVG  192 (767)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHH---------hhhccCCCcccCCCeEEEEEC
Confidence            5577889999999999998888643        12234445555544431         11110000 012357999999


Q ss_pred             CCCCcHHHHHHHHHHhc----CC-C-eEEcchhHH
Q 011994          168 TACVGKSTIATQLAQRL----NL-P-NVLQTDMVY  196 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L----g~-~-~Vi~tD~ir  196 (473)
                      ++|+||||++.+||..+    |. . .++..|+.|
T Consensus       193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            99999999999999766    32 2 345678776

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.16  E-value=0.0027  Score=58.75  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++|.|.|++||||||+++.|++.++
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999984

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.00059  Score=67.13  Aligned_cols=38  Identities=32%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      .++|-|-||+|+||||+|+.||.+||+.++..+=+.|.
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa   41 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRA   41 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHH
Confidence            36899999999999999999999999998754444444

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.15  E-value=0.00035  Score=66.72  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg-~~~Vi~tD~ir~  197 (473)
                      +|.|+|+|||||||+|+.|+..++ +.. ++.|.++.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~-i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCV-IHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeE-EccccccC
Confidence            588999999999999999999994 554 56665543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.15  E-value=0.0023  Score=71.44  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ++|.|.|++||||||+|+.||++||++++..++++|..
T Consensus       443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            48999999999999999999999999987555555543

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.00092  Score=66.00  Aligned_cols=23  Identities=39%  Similarity=0.627  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|+++|.|||||||+|+.||+.|
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L   25 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKEL   25 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHH
Confidence            68999999999999999999988

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.14  E-value=0.0012  Score=61.69  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +..+|+|.|++||||||++..|+..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            346899999999999999999999876

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.13  E-value=0.0024  Score=68.25  Aligned_cols=81  Identities=19%  Similarity=0.055  Sum_probs=51.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           87 FLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        87 glLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      ..|.+.|..+|+.+..|.++...++.......    ..+.+...+.+.|.....       ..      -...+.+|.|.
T Consensus       135 ~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~-------~~------~~~~g~vi~lv  197 (420)
T PRK14721        135 MKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQ----SLKKTISLLTLNLRTIGG-------DE------IIEQGGVYALI  197 (420)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhcCC-------cc------ccCCCcEEEEE
Confidence            45568899999999999999888876543111    112233333332221000       00      01235699999


Q ss_pred             cCCCCcHHHHHHHHHHhc
Q 011994          167 GTACVGKSTIATQLAQRL  184 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L  184 (473)
                      |++|+||||+..+||.++
T Consensus       198 GpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        198 GPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999999764

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.12  E-value=0.00092  Score=63.34  Aligned_cols=26  Identities=31%  Similarity=0.403  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .|++|+|+|||||||||+++.|..++
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999999998876

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.10  E-value=0.00039  Score=65.30  Aligned_cols=24  Identities=46%  Similarity=0.642  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ||.|+|++||||||+|..|+..|+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.10  E-value=0.0025  Score=67.14  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 011994           87 FLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV  165 (473)
Q Consensus        87 glLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI  165 (473)
                      .-|.+.|..+|+....|..+...+.....     .-+.+...+.+..++...         ........ ...+..+|+|
T Consensus        77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~---------l~~~~~~~~~~~~g~ii~l  142 (374)
T PRK14722         77 GALTKYLFAAGFSAQLVRMIVDNLPEGEG-----YDTLDAAADWAQSVLAAN---------LPVLDSEDALMERGGVFAL  142 (374)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHhhhhhcc-----cCCHHHHHHHHHHHHHhc---------chhhcCCCccccCCcEEEE
Confidence            45557789999998888888877654211     112233444444444331         01111110 1223469999


Q ss_pred             EcCCCCcHHHHHHHHHHhc----CC-C-eEEcchhHH
Q 011994          166 CGTACVGKSTIATQLAQRL----NL-P-NVLQTDMVY  196 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~L----g~-~-~Vi~tD~ir  196 (473)
                      +|++|+||||++.+||.++    |. . .++.+|.+|
T Consensus       143 vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R  179 (374)
T PRK14722        143 MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR  179 (374)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            9999999999999999764    32 2 334677765

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.09  E-value=0.0013  Score=66.99  Aligned_cols=40  Identities=33%  Similarity=0.551  Sum_probs=30.5

Q ss_pred             HHHHHHHHhhc---cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          146 SRYRMMTRFHH---QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       146 ~rY~l~~~~~~---~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+..+...|..   .+.|.+|.|+|++||||||+|+.|...+.
T Consensus        45 ~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        45 RRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             hHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34445555542   45799999999999999999998877663

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.05  E-value=0.00088  Score=61.80  Aligned_cols=29  Identities=28%  Similarity=0.494  Sum_probs=25.1

Q ss_pred             EcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          166 CGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      +|+|||||||+++.|+.++|..++ .+|.+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~-~~d~~   29 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFL-DGDFL   29 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEE-eCccC
Confidence            599999999999999999998875 56654

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.05  E-value=0.0043  Score=57.52  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|.|.|+.||||||++..|++.|
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999999987

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.04  E-value=0.00095  Score=63.91  Aligned_cols=38  Identities=29%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +.|++|.|+|.+||||||++..|+. +|++.+ ..|.+.+
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~-d~D~i~~   40 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELF-EADRVAK   40 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEE-eccHHHH
Confidence            3478999999999999999999986 999875 5565443

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.04  E-value=0.00048  Score=64.52  Aligned_cols=27  Identities=44%  Similarity=0.576  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ++|+|.|+|||||||+|..|+.+++.+
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~   28 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQ   28 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence            479999999999999999999998754

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.02  E-value=0.0011  Score=71.09  Aligned_cols=34  Identities=38%  Similarity=0.508  Sum_probs=30.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .-.|..|+|.|+||||||++|+.||..++.+++.
T Consensus        44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~   77 (441)
T TIGR00390        44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK   77 (441)
T ss_pred             ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            3457899999999999999999999999998763

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.02  E-value=0.00058  Score=54.51  Aligned_cols=23  Identities=43%  Similarity=0.686  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|+|+|++|+||||+++.|+..+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK13975 thymidylate kinase; Provisional

Probab=97.00  E-value=0.00067  Score=62.85  Aligned_cols=28  Identities=36%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +++|+|.|++||||||+++.|+++|+..
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~   29 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF   29 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999853

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.96  E-value=0.0019  Score=62.39  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ...+|.+|.|.|++||||||+++.|+..+.
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            556799999999999999999999998874

>PTZ00301 uridine kinase; Provisional

Probab=96.95  E-value=0.00062  Score=65.98  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc----CC-Ce-EEcchhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL----NL-PN-VLQTDMVYE  197 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L----g~-~~-Vi~tD~ir~  197 (473)
                      .+|.|+|+|||||||+|..|+.++    |- .. ++..|.++.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            689999999999999999998776    21 22 456676653

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=96.92  E-value=0.0029  Score=57.71  Aligned_cols=30  Identities=37%  Similarity=0.381  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          169 ACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       169 ~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      |||||||+++.||..||++++..++.+.+.
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~   30 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER   30 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHH
Confidence            699999999999999999998555555443

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=96.92  E-value=0.00082  Score=75.57  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +|.|.|+|||||||+|+.||++||+.++..++++|..
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            7899999999999999999999999998777776663

>PRK07667 uridine kinase; Provisional

Probab=96.92  E-value=0.00097  Score=62.97  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.+.+|.|+|++||||||+|..|+..++
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3458999999999999999999999873

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.89  E-value=0.0032  Score=69.24  Aligned_cols=94  Identities=17%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEE
Q 011994           85 SRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVIL  164 (473)
Q Consensus        85 SRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIl  164 (473)
                      .|..|.+.|...|+....+.++...+....        ...+....+...|.+. .        .+. .........+|+
T Consensus       293 ~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~--------~~~~~~~~l~~~L~~~-l--------~v~-~~~~l~~G~vIa  354 (559)
T PRK12727        293 VRAQALELMDDYGFDAGLTRDVAMQIPADT--------ELHRGRGLMLGLLSKR-L--------PVA-PVDPLERGGVIA  354 (559)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhhhccc--------chhhHHHHHHHHHHHh-c--------CcC-ccccccCCCEEE
Confidence            344555778888888888777777665431        1122333444444331 0        000 000112345899


Q ss_pred             EEcCCCCcHHHHHHHHHHhc-----CCC-eEEcchhHH
Q 011994          165 VCGTACVGKSTIATQLAQRL-----NLP-NVLQTDMVY  196 (473)
Q Consensus       165 I~G~~GsGKSTlA~~LA~~L-----g~~-~Vi~tD~ir  196 (473)
                      |+|++|+||||++..|+..+     +.. .++.+|..|
T Consensus       355 LVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR  392 (559)
T PRK12727        355 LVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR  392 (559)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence            99999999999999999764     222 234667655

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.89  E-value=0.0018  Score=69.42  Aligned_cols=32  Identities=41%  Similarity=0.542  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|..|+|.|+||+||||+|+.||..++.+++.
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~   80 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence            47899999999999999999999999998763

>TIGR00235 udk uridine kinase

Probab=96.88  E-value=0.0011  Score=62.73  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~i  195 (473)
                      .++.+|.|+|++||||||+++.|+..++.  ..++..|.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            45679999999999999999999988762  233455544

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=96.88  E-value=0.0016  Score=62.26  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .+|.|+|.+||||||+++.|+. +|++++..++..++.+.
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~   40 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVE   40 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHh
Confidence            3799999999999999999987 89987655445555544

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.88  E-value=0.0009  Score=58.79  Aligned_cols=27  Identities=37%  Similarity=0.607  Sum_probs=24.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      |+|.|+||+|||++++.||+.++.+.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            799999999999999999999987654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=96.85  E-value=0.0012  Score=75.97  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ++|.|.|++||||||+|..||.+||+.++..++++|..
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            38999999999999999999999999987555666654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.85  E-value=0.00096  Score=60.53  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDL  242 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~~I  242 (473)
                      |.|+|++|+|||||+..|+.+ |++.|  ....|+.+........ ....|.       .-...|..   .+.......+
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~~~~~~~-~~~~~~-------~~~~~~~~---~~l~~~~~~~   67 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEEGGRRDR-DTLPWE-------DDLLAFQE---GILEQQLEAE   67 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHHSSSS-T-TSS-TT--------THHHHHH---H--HHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHHhccccc-hhhhhc-------chHHHHHH---HHHHHHHHHH
Confidence            789999999999999999988 88865  6677776654321110 000110       00111111   1111111122


Q ss_pred             HHHHhCCCcEEEEcccCCcccccc
Q 011994          243 KKAMKDGKPIIIEGIHLDPSIYLM  266 (473)
Q Consensus       243 ekaL~eG~sVIIEGvhL~Pel~l~  266 (473)
                      ..+ .....||.|...+.+-.|..
T Consensus        68 ~~~-~~~~~vi~Dr~~~d~~aY~~   90 (163)
T PF13521_consen   68 ASA-KSSDVVICDRGPLDTLAYSE   90 (163)
T ss_dssp             HHH-H-SSEEEESS-HHHHHHHHH
T ss_pred             Hhh-cCCCcEEEeCChHHHHHHHH
Confidence            222 56777889999888888754

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.84  E-value=0.0024  Score=62.81  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+..++|.|+||+||||+|+.+|..+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999876

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.0018  Score=64.43  Aligned_cols=83  Identities=18%  Similarity=0.303  Sum_probs=61.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL  238 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL  238 (473)
                      ++...+|.|+||+||.|+|..|+..+++.++...|.+|+.+....               ........+.+++..|.+.+
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~t---------------elg~~~~~~~~~g~lvpDei   78 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGT---------------ELGKEAKEAIDKGKLVPDEV   78 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccC---------------cHHHHHHHHHHhcCcCcHHH
Confidence            467899999999999999999999999999878899999866321               12346677888888887775


Q ss_pred             H-HHHHHHHhCC---CcEEEEc
Q 011994          239 A-GDLKKAMKDG---KPIIIEG  256 (473)
Q Consensus       239 ~-~~IekaL~eG---~sVIIEG  256 (473)
                      - ..+.+.+..+   ...|+||
T Consensus        79 v~~~l~~~l~~~~~~~~~ildg  100 (235)
T KOG3078|consen   79 VVRLLEKRLENPRCQKGFILDG  100 (235)
T ss_pred             HHHHHHhhccccccccccccCC
Confidence            3 3455555554   4455554

>PLN02348 phosphoribulokinase

Probab=96.84  E-value=0.0014  Score=69.50  Aligned_cols=30  Identities=23%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ....|++|.|+|.|||||||+|+.|+..||
T Consensus        45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456789999999999999999999999996

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.83  E-value=0.0028  Score=53.18  Aligned_cols=30  Identities=33%  Similarity=0.565  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V  189 (473)
                      ...++|.|++|+||||++..++..+   +..++
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~   51 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFL   51 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence            4578999999999999999999988   55443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=96.83  E-value=0.0046  Score=60.86  Aligned_cols=41  Identities=34%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC---C--CeEEcchhHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN---L--PNVLQTDMVYELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~--~~Vi~tD~ir~~L  199 (473)
                      .+++|+++|.|+.|||++|++|++.|+   +  ..+..+|.-|+..
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~   56 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLS   56 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccc
Confidence            468999999999999999999998884   3  3334556656554

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.83  E-value=0.0035  Score=57.08  Aligned_cols=29  Identities=31%  Similarity=0.491  Sum_probs=26.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++|+++.+.|++|+|||.+++.||+.|
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.82  E-value=0.0009  Score=62.72  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~  197 (473)
                      +|.|+|.|||||||+|..|+..++   .. .+++.|.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            589999999999999999999873   22 3456666654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0039  Score=65.36  Aligned_cols=73  Identities=23%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          105 KIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       105 rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .|..++-++++|+       ++-+..|.-.|+++      .+|..+-..++..-.|..||+.||.|+|||-+|++||+-.
T Consensus         8 eIV~eLd~yIIGQ-------~~AKkaVAIALRNR------~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~   74 (444)
T COG1220           8 EIVSELDRYIIGQ-------DEAKKAVAIALRNR------WRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_pred             HHHHHHHhHhcCc-------HHHHHHHHHHHHHH------HHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh
Confidence            4666777766654       45555555445542      2333455566667789999999999999999999999988


Q ss_pred             CCCeEE
Q 011994          185 NLPNVL  190 (473)
Q Consensus       185 g~~~Vi  190 (473)
                      |.|+|-
T Consensus        75 ~aPFiK   80 (444)
T COG1220          75 GAPFIK   80 (444)
T ss_pred             CCCeEE
Confidence            988763

>TIGR00763 lon ATP-dependent protease La

Probab=96.82  E-value=0.011  Score=67.31  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +..++++.|+||+|||++|+.||..++.+++
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            3448999999999999999999999998765

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.81  E-value=0.001  Score=62.25  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC--CCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN--LPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg--~~~Vi~tD~ir~  197 (473)
                      +|.|.|++||||||+++.|+..++  -..++..|.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            588999999999999999999873  234556676553

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.80  E-value=0.012  Score=64.06  Aligned_cols=32  Identities=31%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|.-||+.|+||||||++|+.+|..+|++.+
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~  288 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL  288 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            45788999999999999999999999999865

>PRK15453 phosphoribulokinase; Provisional

Probab=96.79  E-value=0.0012  Score=67.51  Aligned_cols=40  Identities=18%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC---C-CeEEcchhHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN---L-PNVLQTDMVYE  197 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~-~~Vi~tD~ir~  197 (473)
                      +++.+|.|+|.|||||||+++.|+..++   . ..++..|.++.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4677999999999999999999998774   2 33456666654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0054  Score=68.22  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      +.|+=+|+.||||||||.||+.+|..+|++++-
T Consensus       221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~  253 (802)
T KOG0733|consen  221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLS  253 (802)
T ss_pred             CCCCceeeeCCCCccHHHHHHHHhhhcCCceEe
Confidence            457889999999999999999999999998764

>smart00072 GuKc Guanylate kinase homologues

Probab=96.67  E-value=0.0052  Score=57.36  Aligned_cols=30  Identities=30%  Similarity=0.474  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc--CCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL--NLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~V  189 (473)
                      +++|+|+||+||||+|++..|....  ++.++
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~   33 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERV   33 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEee
Confidence            3589999999999999999999886  45444

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.65  E-value=0.0019  Score=60.61  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM  194 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~  194 (473)
                      .+++|+|++||||||+++.|+..++..++ .+|.
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i-~gd~   36 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAKFI-DGDD   36 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCEEE-CCcc
Confidence            37899999999999999999999988765 5555

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.62  E-value=0.0016  Score=62.10  Aligned_cols=30  Identities=27%  Similarity=0.672  Sum_probs=25.8

Q ss_pred             hhccCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          154 FHHQRVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       154 ~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      |..+.+|.+|+|+|++||||||++..|...
T Consensus         7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          7 FNKPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            345677899999999999999999999754

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.61  E-value=0.0058  Score=61.50  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++|.|+|||||||+|+.+|..+
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHH
Confidence            479999999999999998888766

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.60  E-value=0.0026  Score=65.99  Aligned_cols=95  Identities=21%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHhhC-----------CCCCCCCCccccccccChHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLRTS-----------TDAPLSSSPVWARNFSSSEELVT  225 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i--r~~Lr~~-----------~s~pL~~~~~W~~~y~s~EelI~  225 (473)
                      +..+|+|+|+.|+|||-||-.||.+++...| .+|-+  ++.+.-.           ..++|...-.|     +.+-...
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EII-NsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~-----~~e~t~~   79 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEII-NSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHP-----EAEYTAG   79 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceee-cccceeeecCcccccccCChhhcCCCChHHhCcCCh-----HhhccHH
Confidence            3469999999999999999999999998854 66654  2332211           11222221111     1234466


Q ss_pred             HHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCccccc
Q 011994          226 EFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL  265 (473)
Q Consensus       226 gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l  265 (473)
                      .|...+...++.+..      +...|||+.|+|+.-..++
T Consensus        80 ~F~~~a~~aie~I~~------rgk~PIv~GGs~~yi~al~  113 (348)
T KOG1384|consen   80 EFEDDASRAIEEIHS------RGKLPIVVGGSNSYLQALL  113 (348)
T ss_pred             HHHHHHHHHHHHHHh------CCCCCEEeCCchhhHHHHh
Confidence            777666555554433      4567899999997655443

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.59  E-value=0.0046  Score=64.39  Aligned_cols=24  Identities=38%  Similarity=0.704  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +++|+|+||+||||+++.|+..|.
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~   24 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLR   24 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999997774

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.56  E-value=0.0026  Score=67.42  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      -+.|++++|.|+||||||.+|+.+|..+|+.++.
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~  178 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIV  178 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEE
Confidence            4679999999999999999999999999998763

>PLN02422 dephospho-CoA kinase

Probab=96.52  E-value=0.0037  Score=61.87  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +|.++|.+||||||++..|+ .+|++++.+++..++.+.
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~   40 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLK   40 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHH
Confidence            69999999999999999998 689998755556666554

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.52  E-value=0.0055  Score=65.38  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|||.|+||+|||++|+.||..++.+++.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~  146 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAI  146 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence            479999999999999999999999988753

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.51  E-value=0.0046  Score=64.84  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|.-|+|+|+||||||++|+.+|..++.+++
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i  194 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI  194 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence            45778999999999999999999999998765

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.50  E-value=0.002  Score=62.60  Aligned_cols=24  Identities=42%  Similarity=0.546  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +|.|.|++||||||+|+.|+..+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999883

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PHA00729 NTP-binding motif containing protein

Probab=96.50  E-value=0.003  Score=62.39  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ...|+|+|+||+||||+|..|+.+++
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999986

>CHL00181 cbbX CbbX; Provisional

Probab=96.49  E-value=0.0061  Score=61.63  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+..++|.|+||+||||+|+.+|..+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999998865

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.49  E-value=0.0028  Score=62.66  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      +++|.||+|+|||.+|-.||+++|.+.| ..|.+.
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI-~~Driq   36 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVI-SLDRIQ   36 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEE-EE-SGG
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEE-Eeccee
Confidence            7899999999999999999999999964 777664

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.48  E-value=0.007  Score=64.42  Aligned_cols=30  Identities=33%  Similarity=0.499  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|||.|+||+|||++|+.||..++.+++.
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~  138 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAI  138 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence            468999999999999999999999988763

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.46  E-value=0.0035  Score=68.62  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+++++||+||||||+.+.||+.||+.++
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            459999999999999999999999998654

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.46  E-value=0.012  Score=57.05  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      +..+|+|.||+|+||||+.+.|-...++.+-+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SV   34 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSV   34 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEE
Confidence            46799999999999999999998888665543

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.45  E-value=0.006  Score=59.94  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=27.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      .+.|..++|+|.||+||||+|+.|+   +-+.++..|.-
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~---~~~~~~~~d~~   44 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLP---GKTLVLSFDMS   44 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcC---CCCEEEecccc
Confidence            3457889999999999999999886   44555565553

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK07429 phosphoribulokinase; Provisional

Probab=96.44  E-value=0.003  Score=65.24  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=27.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..+|++|.|+|++||||||+++.|+..++
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence            46789999999999999999999999887

>PLN02924 thymidylate kinase

Probab=96.43  E-value=0.018  Score=56.15  Aligned_cols=29  Identities=28%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++.++|.|.|..||||||++..|++.|+
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~   41 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLK   41 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35578999999999999999999999994

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.42  E-value=0.0072  Score=62.37  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|.-++|.|+||+|||++|+.++..++..++
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~  185 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI  185 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence            45778999999999999999999999987764

Many proteins may score above the trusted cutoff because an internal

>PRK04195 replication factor C large subunit; Provisional

Probab=96.40  E-value=0.0047  Score=66.35  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+..++|.|+||+||||+|..||+.+|+.++.
T Consensus        38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ie   69 (482)
T PRK04195         38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIE   69 (482)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            36789999999999999999999999987653

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=96.40  E-value=0.0047  Score=61.47  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH-HHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV-YELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i-r~~Lr  200 (473)
                      .+|-|+|..||||||+++.|++.+|++.+ ..|.+ ++.+.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~vi-DaD~iar~l~~   41 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVI-DADLVVRELQA   41 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEE-ehHHHHHHHHc
Confidence            47999999999999999999988999976 55554 55443

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.0034  Score=59.54  Aligned_cols=43  Identities=37%  Similarity=0.409  Sum_probs=36.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---C-CCeEEcchhHHHHHhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---N-LPNVLQTDMVYELLRT  201 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g-~~~Vi~tD~ir~~Lr~  201 (473)
                      +-.+|+|+|.+||||||+|-.|.+.|   | +.+++-.|.+|..+..
T Consensus        30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~   76 (207)
T KOG0635|consen   30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK   76 (207)
T ss_pred             CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc
Confidence            45799999999999999999999888   3 5677788999987754

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.36  E-value=0.01  Score=65.98  Aligned_cols=96  Identities=20%  Similarity=0.316  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH--HHHhcC-----CChh-hHHHHHHHHHh----h
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFK--LMERRG-----YGEE-YISRYRMMTRF----H  155 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~--lL~~~~-----yge~-~a~rY~l~~~~----~  155 (473)
                      -|..+|..+.-.|.++.....++-..+...++.+-.++.-...|+.  .+..+.     ||-. .+.+  ++..+    .
T Consensus        20 sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ier--iv~~l~~Aa~   97 (644)
T PRK15455         20 SLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQ--IVSYFRHAAQ   97 (644)
T ss_pred             cHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHH--HHHHHHHHHH
Confidence            4778888888888888888888777764333222211111111111  112222     3311 1221  22222    1


Q ss_pred             -ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 -HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 -~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                       ...+-.+++++||||+||||||..||..|.
T Consensus        98 gl~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         98 GLEEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             hcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence             112335999999999999999999999884

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.021  Score=64.49  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=39.7

Q ss_pred             HHHHHhcCCChh-h---HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          132 FKLMERRGYGEE-Y---ISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       132 ~~lL~~~~yge~-~---a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .++|.+.-||-+ .   +-.|.-+..+...-+-.|++++||||+|||+|++.+|+.+|-.+|-
T Consensus       318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR  380 (782)
T COG0466         318 EKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR  380 (782)
T ss_pred             HHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence            355666556632 1   2223333333333344589999999999999999999999988763

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0058  Score=65.66  Aligned_cols=42  Identities=24%  Similarity=0.224  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEE-------cchhHHHHHhhCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVL-------QTDMVYELLRTST  203 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi-------~tD~ir~~Lr~~~  203 (473)
                      =.|+.||||+||||+..++|..|++..+.       .+|.+|+.|....
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~  285 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATP  285 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCC
Confidence            58999999999999999999999987665       3456888887643

>PRK06620 hypothetical protein; Validated

Probab=96.33  E-value=0.0082  Score=58.13  Aligned_cols=85  Identities=11%  Similarity=0.123  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAG  240 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~  240 (473)
                      ..++|+|++|||||++++.++...+..+ +........+....  ++.   . -++       ++.+.      ...+..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~-~~~~~~~~~~~~~~--d~l---l-iDd-------i~~~~------~~~lf~  104 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI-IKDIFFNEEILEKY--NAF---I-IED-------IENWQ------EPALLH  104 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEE-cchhhhchhHHhcC--CEE---E-Eec-------cccch------HHHHHH
Confidence            4689999999999999999998887643 23221111111100  000   0 000       01110      123555


Q ss_pred             HHHHHHhCCCcEEEEcccCCccccc
Q 011994          241 DLKKAMKDGKPIIIEGIHLDPSIYL  265 (473)
Q Consensus       241 ~IekaL~eG~sVIIEGvhL~Pel~l  265 (473)
                      .+......|+.+|+-+..-.|++.+
T Consensus       105 l~N~~~e~g~~ilits~~~p~~l~l  129 (214)
T PRK06620        105 IFNIINEKQKYLLLTSSDKSRNFTL  129 (214)
T ss_pred             HHHHHHhcCCEEEEEcCCCccccch
Confidence            6666678888888888777776544

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.32  E-value=0.0054  Score=64.59  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=28.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ....+..++|.|+||+||||+|+.|+..++..++
T Consensus        32 ~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~   65 (413)
T PRK13342         32 EAGRLSSMILWGPPGTGKTTLARIIAGATDAPFE   65 (413)
T ss_pred             HcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3445557888999999999999999999887654

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.31  E-value=0.0047  Score=61.33  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      ..|..++|+|+||+|||++|..+|..++...
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            3456789999999999999999999998654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.31  E-value=0.0084  Score=63.50  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.-|+|.|+||||||++|+.+|..++.+++.
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~  209 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR  209 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            457889999999999999999999999887653

>PRK09087 hypothetical protein; Validated

Probab=96.27  E-value=0.0046  Score=60.31  Aligned_cols=87  Identities=11%  Similarity=0.168  Sum_probs=51.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGD  241 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~~  241 (473)
                      .++|.|++|||||+|++.++...+..++-..+...+.+.......+. .+.+.        .+ .      ....++...
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~-iDDi~--------~~-~------~~~~~lf~l  109 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVL-IEDID--------AG-G------FDETGLFHL  109 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEE-EECCC--------CC-C------CCHHHHHHH
Confidence            47999999999999999999988877654333222222111100000 00000        00 0      011335566


Q ss_pred             HHHHHhCCCcEEEEcccCCcccc
Q 011994          242 LKKAMKDGKPIIIEGIHLDPSIY  264 (473)
Q Consensus       242 IekaL~eG~sVIIEGvhL~Pel~  264 (473)
                      +......|+.+|+-+..-.|++-
T Consensus       110 ~n~~~~~g~~ilits~~~p~~~~  132 (226)
T PRK09087        110 INSVRQAGTSLLMTSRLWPSSWN  132 (226)
T ss_pred             HHHHHhCCCeEEEECCCChHHhc
Confidence            66777889999998877666664

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=96.27  E-value=0.0037  Score=59.29  Aligned_cols=35  Identities=31%  Similarity=0.514  Sum_probs=28.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      ++|-|+|..||||||+++.|+. +|++++ ..|.+-+
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vi-daD~i~~   35 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVI-DADEIAH   35 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEE-EHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEE-CccHHHH
Confidence            5899999999999999999987 999976 5554443

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.26  E-value=0.0042  Score=61.55  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|+|.|+||+|||++|..||..+|.+++.
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~   51 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVML   51 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            46789999999999999999999988663

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.25  E-value=0.0083  Score=65.66  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=28.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ...|.-|||.|+||||||++|+.+|..++...+
T Consensus       213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~  245 (512)
T TIGR03689       213 LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG  245 (512)
T ss_pred             CCCCcceEEECCCCCcHHHHHHHHHHhhccccc
Confidence            345778999999999999999999999987643

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.24  E-value=0.0041  Score=61.11  Aligned_cols=30  Identities=37%  Similarity=0.530  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      -++|.|.|+-|+||||||..||++||..++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            368999999999999999999999997765

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.24  E-value=0.0083  Score=62.22  Aligned_cols=32  Identities=44%  Similarity=0.503  Sum_probs=27.6

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..++|.|++|+||||+|+.+|+.++..
T Consensus        34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            34567789999999999999999999999753

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.24  E-value=0.0093  Score=64.23  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=29.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ...|.-++|.|+||||||++|+.||..++.+++.
T Consensus        85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~  118 (495)
T TIGR01241        85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS  118 (495)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            3457789999999999999999999999988764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.24  E-value=0.0058  Score=64.74  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--cchhHHHH
Q 011994          121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL--QTDMVYEL  198 (473)
Q Consensus       121 ~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi--~tD~ir~~  198 (473)
                      .|+-.++++..+..+.   |.+.          ..+..-...|.|+|++|||||||+..|+..+|...+.  ..|.+++.
T Consensus       193 ~iSaT~IR~~p~~~w~---~i~~----------~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~  259 (399)
T PRK08099        193 NISGTQIRENPFRYWE---YIPT----------EVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSH  259 (399)
T ss_pred             CcCHHHHhhCHHHHHH---hcCH----------HHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHh
Confidence            4566666666665542   2111          1112234579999999999999999999999987653  33444443

>PRK06761 hypothetical protein; Provisional

Probab=96.23  E-value=0.0046  Score=62.87  Aligned_cols=68  Identities=9%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             cEEEEEEEEecchhhHHHHHHhhhhh---------------cccc--ccc-ccchHHHHhhHHHHHHHHhhhccCCceEe
Q 011994          372 PIIIPIVLKMADFDHKALLEEWILTH---------------TFGD--KCL-VQNKDELVSKLKTIQNYLCSFKSQGVTVV  433 (473)
Q Consensus       372 ~iivp~vl~~~~~dh~~lle~~~~~r---------------a~~~--~~~-~~~~~~~i~nl~~IQ~yLc~~~~q~~~vv  433 (473)
                      |+- |+|+++...|=+..++.=++-|               ..+.  +.. +..--++++.-|.|+++|...  -++...
T Consensus       180 ~l~-p~l~yl~~~dv~~~~~~~~~eR~~~W~~~~~~~~~~~~y~~~~~~~g~~G~i~~~~~r~~~e~~~~~~--L~~~~~  256 (282)
T PRK06761        180 NLN-PMLFYLEQDDVEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNLSGVEGRIKVLEARKNLELEILDM--LKMKKE  256 (282)
T ss_pred             ccC-cEEEEecccCHHHHHHHHHHhcchHHHHHHHHHHhcCcHHhhcCCCCchhHHHHHHHHHHHHHHHHHh--CCCceE
Confidence            444 9999999998877775423223               1111  000 011148888889999999853  456778


Q ss_pred             eecCCCccc
Q 011994          434 NVSATTFPQ  442 (473)
Q Consensus       434 ~i~~~~~~~  442 (473)
                      .|+++.++.
T Consensus       257 ~i~~~~~~~  265 (282)
T PRK06761        257 KINNTKEEI  265 (282)
T ss_pred             EcCCcccch
Confidence            888887765

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.23  E-value=0.0075  Score=65.23  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=27.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..++|+|+||+||||+|+.+|..++..
T Consensus        32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~   63 (472)
T PRK14962         32 KNSISHAYIFAGPRGTGKTTVARILAKSLNCE   63 (472)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34456779999999999999999999998753

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=96.22  E-value=0.0055  Score=58.62  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +|.|+|.+||||||++..|+. +|+.++.+++..++.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~   38 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTE   38 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHh
Confidence            478999999999999999975 79887655555555443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.21  E-value=0.0043  Score=59.08  Aligned_cols=28  Identities=29%  Similarity=0.634  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.++.|+|+|+||+||||++.+++..|.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            4578999999999999999999998883

>PF05729 NACHT: NACHT domain

Probab=96.21  E-value=0.0039  Score=54.81  Aligned_cols=24  Identities=42%  Similarity=0.588  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++++|.|.+|+||||+++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            378999999999999999999877

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=96.19  E-value=0.0039  Score=57.83  Aligned_cols=27  Identities=44%  Similarity=0.567  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      +|.|.|..||||||++..|++++|+..
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~   27 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEV   27 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcc
Confidence            488999999999999999999888654

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.19  E-value=0.0034  Score=53.98  Aligned_cols=23  Identities=43%  Similarity=0.640  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcC
Q 011994          163 ILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      |+|.|+||+|||++|..|+..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998774

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.016  Score=60.62  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ++|++.||||+|||+|++.||++|-+.
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheee
Confidence            589999999999999999999999776

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=96.16  E-value=0.016  Score=55.70  Aligned_cols=28  Identities=36%  Similarity=0.542  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +|.|-|.-||||||+++.|+++++...+
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~   28 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYF   28 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            4889999999999999999999987644

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.14  E-value=0.0045  Score=64.24  Aligned_cols=28  Identities=46%  Similarity=0.559  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .|+|.|+||+||||++..||.++|++++
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            5899999999999999999999998865

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.14  E-value=0.014  Score=62.84  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|++|.|.|++||||||++..|...+
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL  236 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLF  236 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999999998766

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.13  E-value=0.018  Score=65.11  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=28.3

Q ss_pred             cCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          157 QRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+|. .++|+||+|+|||++|+.||+.++...+
T Consensus       480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~  513 (731)
T TIGR02639       480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLE  513 (731)
T ss_pred             CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeE
Confidence            34576 6899999999999999999999987654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.09  E-value=0.019  Score=65.49  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=28.6

Q ss_pred             cCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          157 QRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+|. .++|+||+|||||++|+.||..++.+++
T Consensus       484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i  517 (758)
T PRK11034        484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_pred             CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence            35665 7999999999999999999999987754

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.09  E-value=0.0063  Score=61.85  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..++|.|+||+||||+|..+|..++....
T Consensus        49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            34567899999999999999999999987643

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.08  E-value=0.006  Score=55.65  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      ..+|++.|..|+||||+++.+++.+|+..
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~~   50 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQG   50 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCC
Confidence            45899999999999999999999999753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.08  E-value=0.007  Score=56.78  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..++++||+|+|||.+|+.||+.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            47999999999999999999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=96.08  E-value=0.0075  Score=63.63  Aligned_cols=38  Identities=32%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .|.|+|..||||||+++.|+. +|++++.++...++.+.
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~   40 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVE   40 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhc
Confidence            689999999999999999987 89997644444455443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.08  E-value=0.0081  Score=56.65  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...+..|+|.|++|+|||++|+.++..+
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4456789999999999999999999876

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd04155 Arl3 Arl3 subfamily

Probab=96.07  E-value=0.0077  Score=53.85  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=26.3

Q ss_pred             HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       150 l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +++++.....+..|+|.|++|+||||+...|...
T Consensus         4 ~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155           4 LLRKLRKSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             HHHHhhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            3444444455678999999999999999999753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.04  E-value=0.011  Score=60.35  Aligned_cols=32  Identities=31%  Similarity=0.521  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|..|||.|+||+|||.+|+.||...+.+.++
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~  181 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLL  181 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEE
Confidence            48899999999999999999999999988765

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.02  E-value=0.014  Score=62.80  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|.-++|+|+||||||++|+.+|..++.+++
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi  246 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANETSATFL  246 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            45778999999999999999999999987754

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.99  E-value=0.019  Score=59.32  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             HHHHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          147 RYRMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       147 rY~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.++..+. ...++.+|-|+|+||+||||+...|..+|
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            345655554 67789999999999999999999999888

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.99  E-value=0.01  Score=59.30  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      ..+.|.++++.|++|+||||+|..++..++..+
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            345578899999999999999999999887543

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.98  E-value=0.012  Score=64.06  Aligned_cols=32  Identities=38%  Similarity=0.486  Sum_probs=27.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..++|+|++|+||||+|+.||+.++..
T Consensus        36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            44456779999999999999999999999864

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.96  E-value=0.021  Score=53.61  Aligned_cols=26  Identities=50%  Similarity=0.635  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +++|.|++|||||++|..++...+-+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~   26 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGP   26 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999886643

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=95.93  E-value=0.012  Score=65.82  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCC----eEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLP----NVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~----~Vi~tD~ir~~Lr  200 (473)
                      ..+|++.|.||+||||+|+.|++.|++.    .+...|.+|..+.
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~  259 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLE  259 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhc
Confidence            3589999999999999999999998543    3345566665543

>PLN02796 D-glycerate 3-kinase

Probab=95.92  E-value=0.0081  Score=62.86  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..|.+|.|.|++||||||++..|+..+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            4789999999999999999999998884

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.044  Score=62.19  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       151 ~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +..++..-+-.|++|.||||+|||++|+.+|+.||-.++
T Consensus       429 V~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf  467 (906)
T KOG2004|consen  429 VGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF  467 (906)
T ss_pred             HHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence            344444445679999999999999999999999997654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.90  E-value=0.0061  Score=54.77  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +|+|+|++||||||++..|+..+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            368899999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.89  E-value=0.017  Score=60.07  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=29.3

Q ss_pred             HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       149 ~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++..+. ..+.|.+|.|+|+||+||||++..|...+
T Consensus        44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3555554 36789999999999999999999987766

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.89  E-value=0.016  Score=65.40  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      +.|.-|||.|+||||||++|+.||..++.+++.
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~  517 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIA  517 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            457789999999999999999999999987653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.018  Score=61.76  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|..|||.|+||||||++|..+|..++.+++.
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~  306 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS  306 (494)
T ss_pred             CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence            3567799999999999999999999988888763

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.89  E-value=0.013  Score=66.04  Aligned_cols=32  Identities=44%  Similarity=0.476  Sum_probs=28.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||+.+++.
T Consensus        33 ~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         33 RGRLHHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            44557789999999999999999999999864

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.86  E-value=0.011  Score=58.92  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++|.|++|+||||+|+.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            578999999999999999999884

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.86  E-value=0.014  Score=61.27  Aligned_cols=31  Identities=32%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .+.|..++|.|++|+||||+|..+|+.++..
T Consensus        35 ~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         35 GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4557779999999999999999999999774

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.86  E-value=0.0073  Score=55.19  Aligned_cols=35  Identities=37%  Similarity=0.431  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY  196 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir  196 (473)
                      ++++.|++|+||||++..|+..+   |... ++..|..+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            68999999999999999999876   5543 45667654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=95.85  E-value=0.048  Score=53.72  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      .+|-++|..||||||+++.+- ++|++.|.++-..|+..
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv   39 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV   39 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence            478899999999999999996 89999764443445554

>COG4240 Predicted kinase [General function prediction only]

Probab=95.84  E-value=0.011  Score=59.24  Aligned_cols=29  Identities=28%  Similarity=0.491  Sum_probs=25.4

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.++|.++.|+|+.||||||++..|-..|
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L   74 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLL   74 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHH
Confidence            46779999999999999999999886655

>PRK06921 hypothetical protein; Provisional

Probab=95.83  E-value=0.071  Score=53.42  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..-++|.|++|+|||.|+..++..+
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l  141 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANEL  141 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            3468999999999999999999876

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.82  E-value=0.015  Score=65.02  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ..+.+|.|+|++||||||+++.|+..+....++..|.+
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            45789999999999999999999998854444555544

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.81  E-value=0.014  Score=67.64  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=28.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||+.|+..
T Consensus        34 ~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         34 QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            34567788999999999999999999999865

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.80  E-value=0.0075  Score=54.39  Aligned_cols=29  Identities=28%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ....|.+++|.|++|+|||++...+..++
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34557899999999999999999888776

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=95.80  E-value=0.071  Score=61.20  Aligned_cols=100  Identities=21%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhc-Cc--------------------ccccHHHHHHHHHHHHHhcCCChh-hHH
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDN-SL--------------------LDVSQSDLEANLFKLMERRGYGEE-YIS  146 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~-~v--------------------~~I~~~eLe~~v~~lL~~~~yge~-~a~  146 (473)
                      |..-+..++++.++..++-.++.+.-.-. .-                    ..-..-+|. ...++|.+.-||.+ .-+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~-~~~~~l~~~~~g~~~vK~  332 (784)
T PRK10787        254 LKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLR-QAQEILDTDHYGLERVKD  332 (784)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHH-HHHHHhhhhccCHHHHHH
Confidence            44556778888888888888877642211 00                    011111222 22345555446633 222


Q ss_pred             HHH--HH-HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          147 RYR--MM-TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       147 rY~--l~-~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +..  +. ..........+++|.|+||+||||+++.+|..+|.+++
T Consensus       333 ~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~  378 (784)
T PRK10787        333 RILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV  378 (784)
T ss_pred             HHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            221  11 11111223447999999999999999999999998765

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=95.79  E-value=0.012  Score=56.56  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=35.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr  200 (473)
                      ++++.++|.||+||||+...+...+ +...|..+|.+.+...
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~   45 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAK   45 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHH
Confidence            5799999999999999999999999 7887888898877543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.77  E-value=0.007  Score=52.60  Aligned_cols=23  Identities=48%  Similarity=0.653  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +++|.|+||+||||++..++..+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=95.76  E-value=0.012  Score=54.70  Aligned_cols=26  Identities=35%  Similarity=0.465  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +++|+|+||+|+||+|++..|...+.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            45789999999999999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.76  E-value=0.0076  Score=51.68  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+++|.|++|+|||+++..++..+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999999987

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.76  E-value=0.015  Score=63.37  Aligned_cols=31  Identities=32%  Similarity=0.386  Sum_probs=27.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..++|+|++|+||||+|+.||+.+..
T Consensus        32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4456788999999999999999999999864

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=95.75  E-value=0.033  Score=55.87  Aligned_cols=81  Identities=21%  Similarity=0.427  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK  236 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e  236 (473)
                      +|+|+|.|+|||||.|..|...|.     ..+++.+|.-    .+...         +..|.++.        ..+.+..
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~---------ns~y~~s~--------~EK~lRg   61 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIEK---------NSNYGDSQ--------AEKALRG   61 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCCC---------cccccccH--------HHHHHHH
Confidence            688999999999999999998872     2344444433    11111         01121110        0112334


Q ss_pred             HHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          237 GLAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       237 gL~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      .|...+++.|..+.-||+|.-..-.+|
T Consensus        62 ~L~S~v~R~Lsk~~iVI~DslNyIKGf   88 (281)
T KOG3062|consen   62 KLRSAVDRSLSKGDIVIVDSLNYIKGF   88 (281)
T ss_pred             HHHHHHHhhcccCcEEEEecccccccc
Confidence            467788889999999999987754444

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=95.75  E-value=0.023  Score=58.47  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      ..+-.+|+.||||.||||+|..+|..+|...
T Consensus        50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          50 EALDHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            3455899999999999999999999998754

>PRK08116 hypothetical protein; Validated

Probab=95.75  E-value=0.025  Score=56.67  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V  189 (473)
                      +.-++|.|++|+|||.||..++..+   |.+.+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~  146 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVI  146 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            3468999999999999999999986   55543

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.74  E-value=0.0062  Score=61.91  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC---C-CeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN---L-PNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg---~-~~Vi~tD~ir~  197 (473)
                      +|.|+|.+||||||++..|+..++   . ..++..|.++.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            588999999999999999998773   3 34556666654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.73  E-value=0.014  Score=57.94  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCe-EEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPN-VLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~-Vi~tD~ir~~Lr~  201 (473)
                      ++|.|+|.+||||||+|+.+. ..|.++ +..+|-+++.|+-
T Consensus         1 miI~i~G~~gsGKstva~~~~-~~g~~~~~~~~d~ik~~l~~   41 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFII-ENYNAVKYQLADPIKEILAI   41 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHH-hcCCcEEEehhHHHHHHHHH
Confidence            489999999999999999885 467666 7789999988764

>PHA02244 ATPase-like protein

Probab=95.73  E-value=0.016  Score=61.36  Aligned_cols=39  Identities=28%  Similarity=0.470  Sum_probs=31.0

Q ss_pred             HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 011994          153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD  193 (473)
Q Consensus       153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD  193 (473)
                      ++...+.|  |+|.|++|||||++|..||..+|.+++...+
T Consensus       114 r~l~~~~P--VLL~GppGtGKTtLA~aLA~~lg~pfv~In~  152 (383)
T PHA02244        114 KIVNANIP--VFLKGGAGSGKNHIAEQIAEALDLDFYFMNA  152 (383)
T ss_pred             HHHhcCCC--EEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            33344545  6789999999999999999999999875543

>PRK07933 thymidylate kinase; Validated

Probab=95.71  E-value=0.063  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++|.|-|.-||||||+++.|++.|
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L   24 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAAL   24 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999998

>PLN03025 replication factor C subunit; Provisional

Probab=95.70  E-value=0.013  Score=59.34  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|.|+||+||||+|..+|+.+
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999987

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.70  E-value=0.017  Score=62.99  Aligned_cols=32  Identities=41%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||+.++..
T Consensus        34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            44567789999999999999999999999764

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.69  E-value=0.016  Score=63.07  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=27.7

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||+.+++.
T Consensus        31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         31 LNKIPQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             cCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            44557789999999999999999999988653

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.68  E-value=0.011  Score=55.03  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      .-|+|+|++|+||||+|..|.. .|... +++|.+
T Consensus        15 ~gvLi~G~sG~GKStlal~L~~-~g~~l-vaDD~v   47 (149)
T cd01918          15 IGVLITGPSGIGKSELALELIK-RGHRL-VADDRV   47 (149)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH-cCCeE-EECCEE
Confidence            4689999999999999999876 47665 477743

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=95.67  E-value=0.036  Score=51.95  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ||.|.|..|||++++|..||++||++++. .+.+.+...
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d-~~ii~~~a~   38 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYD-REIIEEAAK   38 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE--HHHHHHCT-
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCC-HHHHHHHHH
Confidence            68999999999999999999999999874 477776544

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.022  Score=63.80  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|.=||+.|||||||||+|+.||..-++.++
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl  497 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFL  497 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence            46788999999999999999999999988765

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=95.65  E-value=0.042  Score=50.81  Aligned_cols=79  Identities=28%  Similarity=0.354  Sum_probs=44.6

Q ss_pred             EEcCCCCcHHHHHHHHHHhc---CCCeEE----c----chhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994          165 VCGTACVGKSTIATQLAQRL---NLPNVL----Q----TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI  233 (473)
Q Consensus       165 I~G~~GsGKSTlA~~LA~~L---g~~~Vi----~----tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~  233 (473)
                      |=|..||||||+++.|+++|   |+..+.    .    .+.+++.+.....  +           ++.....-|...   
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~--~-----------~~~~~~~l~~a~---   64 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESE--L-----------SPEAEALLFAAD---   64 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSST--C-----------GHHHHHHHHHHH---
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccC--C-----------CHHHHHHHHHHH---
Confidence            45999999999999999998   443222    1    1344444431110  0           011111222211   


Q ss_pred             hHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994          234 VRKGLAGDLKKAMKDGKPIIIEGIHL  259 (473)
Q Consensus       234 V~egL~~~IekaL~eG~sVIIEGvhL  259 (473)
                      ....+...+..++..|..||.|-.++
T Consensus        65 r~~~~~~~I~~~l~~g~~VI~DRy~~   90 (186)
T PF02223_consen   65 RAWHLARVIRPALKRGKIVICDRYIY   90 (186)
T ss_dssp             HHHHHHHTHHHHHHTTSEEEEESEHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEechhH
Confidence            11234456778899999999987544

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK12377 putative replication protein; Provisional

Probab=95.65  E-value=0.019  Score=57.23  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++|.|++|+|||+||..++..+
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l  125 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRL  125 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999988

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.62  E-value=0.016  Score=56.59  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +..++|+|++|||||+++..++..+.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~   70 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELS   70 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34789999999999999999998663

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.62  E-value=0.014  Score=63.83  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      ..+.|..+||+|++|+||||+|+.||+.++...
T Consensus        39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            445677899999999999999999999998753

>CHL00176 ftsH cell division protein; Validated

Probab=95.61  E-value=0.016  Score=65.06  Aligned_cols=33  Identities=24%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.-|+|.|+||+|||++|+.||..++.+++.
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~  246 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS  246 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            457789999999999999999999999988764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.60  E-value=0.011  Score=56.25  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +|+|+|++||||||+...|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            789999999999999999887774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.027  Score=59.43  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|.=||+.||||+|||.+|++.|.+.+..++
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI  214 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFI  214 (406)
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCceEE
Confidence            45778999999999999999999999997765

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.012  Score=61.36  Aligned_cols=30  Identities=37%  Similarity=0.537  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQ  191 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~  191 (473)
                      .|++.||.|||||.||+.||+.|+.|+.++
T Consensus        99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiA  128 (408)
T COG1219          99 NILLIGPTGSGKTLLAQTLAKILNVPFAIA  128 (408)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence            799999999999999999999999998764

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.57  E-value=0.012  Score=64.67  Aligned_cols=30  Identities=27%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      -.+++|+||+||||||+.+.|+..+|+.++
T Consensus       110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  110 SRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             ceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            459999999999999999999999998754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.55  E-value=0.025  Score=63.96  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..|+|.|+||+||||+|+.||..++.+++
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i  241 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI  241 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence            45678999999999999999999999987765

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.54  E-value=0.015  Score=46.06  Aligned_cols=31  Identities=42%  Similarity=0.535  Sum_probs=25.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEEcc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVLQT  192 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~t  192 (473)
                      +++++|..|+||||++..|+..+   |.+.++.+
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            47899999999999999999988   66655444

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK06526 transposase; Provisional

Probab=95.54  E-value=0.016  Score=57.68  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..++|+|++|+|||++|..|+..+
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHH
Confidence            4578999999999999999998765

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.53  E-value=0.031  Score=56.98  Aligned_cols=30  Identities=40%  Similarity=0.577  Sum_probs=26.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ....|.||.|+|++|+||||+|+.|+..+.
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~  107 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLS  107 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHh
Confidence            456799999999999999999999998773

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.52  E-value=0.011  Score=55.28  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .|+|+|.||+||||+..++.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            38999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.52  E-value=0.034  Score=53.14  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..++|+|++|+|||++|..++..+
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999876

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.49  E-value=0.024  Score=62.15  Aligned_cols=31  Identities=45%  Similarity=0.551  Sum_probs=27.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||+|++|+||||+|+.||+.+++
T Consensus        34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (527)
T PRK14969         34 QQRLHHAYLFTGTRGVGKTTLARILAKSLNC   64 (527)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3456778899999999999999999999965

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.49  E-value=0.026  Score=54.67  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.+++|.|++|+||||+++.++..+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.49  E-value=0.014  Score=59.98  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|+|.|++|+|||||+..|+..+|.+++.
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            378999999999999999999999998753

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.48  E-value=0.017  Score=63.68  Aligned_cols=31  Identities=42%  Similarity=0.492  Sum_probs=26.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||+|++|+||||+|+.||+.++.
T Consensus        34 ~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         34 TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3455678999999999999999999998864

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.48  E-value=0.0088  Score=54.75  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeE--E-cchhHHHHHhh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNV--L-QTDMVYELLRT  201 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V--i-~tD~ir~~Lr~  201 (473)
                      .|||-|.||+||||+|+.||..+|..+.  - ..|..-.-+.+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G   43 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG   43 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence            3799999999999999999999987643  1 23666555554

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=95.47  E-value=0.013  Score=57.70  Aligned_cols=39  Identities=23%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +-.||-|.|.+++||||||..|.+.++-..+++-|.+++
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK   41 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK   41 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence            346899999999999999999999996555566666654

>PF13479 AAA_24: AAA domain

Probab=95.46  E-value=0.013  Score=56.15  Aligned_cols=29  Identities=34%  Similarity=0.584  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ  191 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~  191 (473)
                      +|..++|.|+||+||||+|..+    +-+.++.
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id   30 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL----PKPLFID   30 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC----CCeEEEE
Confidence            5789999999999999999877    4444443

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=95.43  E-value=0.028  Score=59.13  Aligned_cols=95  Identities=24%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHH---HHH-----HHH--HHHHhcCCC-hhhHHHHHHHHHhhc-
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSD---LEA-----NLF--KLMERRGYG-EEYISRYRMMTRFHH-  156 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~e---Le~-----~v~--~lL~~~~yg-e~~a~rY~l~~~~~~-  156 (473)
                      |..+|..+.-.|.+|.....++...+...++..|...+   +..     .+.  ......-|| ++.+.  +++..|+. 
T Consensus         3 ~~eYL~~~~~~p~~~~~A~~r~~~~I~~~G~~~i~~~~~~~~~rif~~~~~~~y~~f~~~~~G~~~~i~--~lV~~fk~A   80 (358)
T PF08298_consen    3 FAEYLELVKEDPSVAANAHQRLYDMIGEPGTEVIDTSEDPRLYRIFSNDTIKRYPFFEDEFYGMEETIE--RLVNYFKSA   80 (358)
T ss_pred             HHHHHHHHHhCcHhhhhHHHHHHHHHhccCcEEEeccccceEEEecccccccccCCccccccCcHHHHH--HHHHHHHHH
Confidence            56788888888999998999998888877663222111   000     000  000100122 11122  12333321 


Q ss_pred             ----cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 ----QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ----~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                          ..+-.|+++.||.|+||||++..|.+.|.
T Consensus        81 A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   81 AQGLEERKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             HhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence                12236999999999999999999998774

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.43  E-value=0.024  Score=63.26  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ...+.|..+||.|++|+||||+|..+|+.+..
T Consensus        33 ~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         33 LNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             HcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34456778999999999999999999999965

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.41  E-value=0.023  Score=63.89  Aligned_cols=31  Identities=45%  Similarity=0.492  Sum_probs=27.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||.|++|+||||+|+.||+.++.
T Consensus        34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            4456778999999999999999999999965

>PRK13976 thymidylate kinase; Provisional

Probab=95.37  E-value=0.073  Score=51.52  Aligned_cols=50  Identities=6%  Similarity=0.019  Sum_probs=32.2

Q ss_pred             hHHHHhhHHHHHHHHhhhccCCceEeeecCCCccch---HHHHHHHHHHHHHHhh
Q 011994          408 KDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQT---LDWLHGYLLQCIEKGI  459 (473)
Q Consensus       408 ~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~t---ld~lH~~ll~~i~~~~  459 (473)
                      ...++++++..=..|..  ..+...+-|+++.-.++   ++-+|..+++.|..-+
T Consensus       151 ~~~~l~~v~~~Y~~l~~--~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~  203 (209)
T PRK13976        151 DLEFYDKVRKGFREIVI--KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT  203 (209)
T ss_pred             cHHHHHHHHHHHHHHHH--hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence            36777766665444443  33334556666543456   9999999999887654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.35  E-value=0.013  Score=66.36  Aligned_cols=30  Identities=30%  Similarity=0.571  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|+|+||+||-||||||+.+|+.-|+.+|-
T Consensus       327 KilLL~GppGlGKTTLAHViAkqaGYsVvE  356 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE  356 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence            599999999999999999999999998764

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.31  E-value=0.028  Score=62.92  Aligned_cols=31  Identities=42%  Similarity=0.540  Sum_probs=27.7

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||+|++|+||||+|+.||+.|++
T Consensus        34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4456788999999999999999999999976

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.31  E-value=0.028  Score=62.47  Aligned_cols=31  Identities=32%  Similarity=0.390  Sum_probs=27.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||+|++|+||||+|..||+.++.
T Consensus        31 ~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952         31 AGRINHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4456778999999999999999999998874

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.28  E-value=0.014  Score=53.80  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.+|.||||+||||++..+...+
T Consensus        18 ~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   18 GITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHHHHh
Confidence            378999999999998777777665

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.27  E-value=0.029  Score=63.28  Aligned_cols=32  Identities=41%  Similarity=0.522  Sum_probs=28.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||+.|++.
T Consensus        34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~   65 (700)
T PRK12323         34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT   65 (700)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            45567789999999999999999999999873

>PF13173 AAA_14: AAA domain

Probab=95.24  E-value=0.03  Score=49.12  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+++|.|+.||||||++..+++.+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3789999999999999999998875

>PTZ00202 tuzin; Provisional

Probab=95.23  E-value=0.17  Score=55.37  Aligned_cols=43  Identities=19%  Similarity=0.431  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc-----chhHHHHHhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ-----TDMVYELLRT  201 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~-----tD~ir~~Lr~  201 (473)
                      .|.++.|.|++||||||+++.+...++...++.     .|.++..++.
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A  332 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA  332 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH
Confidence            467999999999999999999999998654431     3555555544

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.22  E-value=0.018  Score=54.76  Aligned_cols=27  Identities=19%  Similarity=0.266  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ++.++.|+|++||||||++..|...|.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            455899999999999999999997773

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.0097  Score=62.70  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.-|++.||||||||-+|.++|.+.|..++.
T Consensus       124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn  157 (386)
T KOG0737|consen  124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN  157 (386)
T ss_pred             ccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence            3568899999999999999999999999877653

>PF13245 AAA_19: Part of AAA domain

Probab=95.21  E-value=0.02  Score=47.14  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=17.2

Q ss_pred             eEEEEEcCCCCcHHH-HHHHHHHhc
Q 011994          161 LVILVCGTACVGKST-IATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKST-lA~~LA~~L  184 (473)
                      .+.+|.|+||+|||+ ++..++..+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            467889999999994 445444444

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=95.20  E-value=0.032  Score=63.22  Aligned_cols=32  Identities=44%  Similarity=0.512  Sum_probs=28.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||+.|++.
T Consensus        34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691         34 EGRLHHAYLLTGTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            34557789999999999999999999999865

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=95.19  E-value=0.014  Score=55.48  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMVY  196 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg-~~~Vi~tD~ir  196 (473)
                      +|+-.+++||||||+|..|+.-+| +.+| +.|.+.
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~wgHv-QnDnI~   35 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGEWGHV-QNDNIT   35 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCCCCcc-ccCCCC
Confidence            356678999999999999999999 9986 666553

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=95.17  E-value=0.025  Score=64.31  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=27.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ...+...++|.|+||+||||+|+.++..++..++
T Consensus        48 ~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~   81 (725)
T PRK13341         48 KADRVGSLILYGPPGVGKTTLARIIANHTRAHFS   81 (725)
T ss_pred             hcCCCceEEEECCCCCCHHHHHHHHHHHhcCcce
Confidence            3444446799999999999999999998876543

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.17  E-value=0.017  Score=58.04  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +|.|+|++||||||+++.|+..++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC
Confidence            478999999999999999998874

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.16  E-value=0.033  Score=62.32  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ...+.|..+||.|++|+||||+|..||+.+++.
T Consensus        33 ~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         33 RMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             HcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            344667789999999999999999999999875

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.15  E-value=0.018  Score=61.36  Aligned_cols=39  Identities=31%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCC------CeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNL------PNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~------~~Vi~tD~ir~  197 (473)
                      ...+|.++||.|+||||+..+||.++.+      --++.+|++|=
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI  246 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI  246 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence            3679999999999999999999998851      23457898883

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=95.15  E-value=0.029  Score=52.18  Aligned_cols=31  Identities=32%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||.|++|+||||+|..+++.+..
T Consensus        10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~   40 (188)
T TIGR00678        10 KGRLAHAYLFAGPEGVGKELLALALAKALLC   40 (188)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4456789999999999999999999998854

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.11  E-value=0.038  Score=57.26  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++|.|++|+|||.||..+|..+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l  207 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKEL  207 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999999987

>PRK09183 transposase/IS protein; Provisional

Probab=95.06  E-value=0.035  Score=55.26  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...++|.|++|+|||++|..|+..+
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            3478899999999999999997654

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.06  E-value=0.02  Score=59.64  Aligned_cols=28  Identities=39%  Similarity=0.631  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+|.+|.|+|.+||||||++..|..+|.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999998885

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=95.04  E-value=0.038  Score=61.62  Aligned_cols=32  Identities=34%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|.-+||+|++|+||||+|+.||+.|++.
T Consensus        42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~   73 (598)
T PRK09111         42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE   73 (598)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence            44567789999999999999999999999764

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.02  E-value=0.022  Score=48.05  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcC
Q 011994          163 ILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      |++.|.+|+|||||.+.|+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            79999999999999999986553

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.01  E-value=0.033  Score=56.22  Aligned_cols=32  Identities=31%  Similarity=0.445  Sum_probs=27.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..++|.|++|+||||+|..|++.+...
T Consensus        32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~   63 (355)
T TIGR02397        32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (355)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34457789999999999999999999998643

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=94.99  E-value=0.16  Score=52.05  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE--EcchhHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV--LQTDMVYEL  198 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V--i~tD~ir~~  198 (473)
                      ..-++|.|++|+|||.|+..||..+   |++.+  ...+.+.+.
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l  199 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL  199 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence            4568999999999999999999988   66533  234444443

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=0.038  Score=62.99  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=31.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.=+|++||||||||.||+++|..-|+|++.
T Consensus       341 AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~s  374 (774)
T KOG0731|consen  341 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS  374 (774)
T ss_pred             CcCcCceEEECCCCCcHHHHHHHHhcccCCceee
Confidence            4568889999999999999999999999999875

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.056  Score=57.84  Aligned_cols=42  Identities=24%  Similarity=0.261  Sum_probs=34.6

Q ss_pred             HHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          149 RMMTRFHHQRVPL-VILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       149 ~l~~~~~~~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|-..|..-++|. =||+.||||+|||.||+++|...|..++.
T Consensus       233 ~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFN  275 (491)
T KOG0738|consen  233 WMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFN  275 (491)
T ss_pred             hhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEE
Confidence            4555666777786 68999999999999999999999977654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.96  E-value=0.019  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +++|.|+||+|||+++..++...
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~   23 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAG   23 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            47999999999999999887643

A related protein is found in archaea.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=94.96  E-value=0.031  Score=55.15  Aligned_cols=31  Identities=39%  Similarity=0.513  Sum_probs=27.0

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +.+.|..+||.|+||+||||+|..||+.++.
T Consensus        20 ~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~   50 (325)
T COG0470          20 SGRLPHALLFYGPPGVGKTTAALALAKELLC   50 (325)
T ss_pred             cCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence            3456778999999999999999999999974

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.95  E-value=0.056  Score=50.59  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+++|+|++||||||+.+.|...+.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4899999999999999999987663

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07952 DNA replication protein DnaC; Validated

Probab=94.93  E-value=0.11  Score=51.69  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++|.|++|+|||+|+..++..+
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l  123 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNEL  123 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999999988

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.93  E-value=0.033  Score=57.26  Aligned_cols=31  Identities=35%  Similarity=0.620  Sum_probs=26.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..++|+|++|+||||+|..+++.++.
T Consensus        35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~   65 (367)
T PRK14970         35 NNHLAQALLFCGPRGVGKTTCARILARKINQ   65 (367)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3455779999999999999999999998865

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.93  E-value=0.039  Score=56.07  Aligned_cols=28  Identities=18%  Similarity=0.407  Sum_probs=24.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...|..++|.|+||+|||++++.++..+
T Consensus        37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        37 GSRPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999998765

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=94.89  E-value=0.089  Score=60.47  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.0

Q ss_pred             ccCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...+|. .++|+||+|+|||++|..||+.+
T Consensus       534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l  563 (821)
T CHL00095        534 NPNRPIASFLFSGPTGVGKTELTKALASYF  563 (821)
T ss_pred             CCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            345675 57899999999999999999987

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.037  Score=57.60  Aligned_cols=51  Identities=27%  Similarity=0.372  Sum_probs=40.6

Q ss_pred             HHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE--EcchhHHHHH
Q 011994          149 RMMTRFHHQRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV--LQTDMVYELL  199 (473)
Q Consensus       149 ~l~~~~~~~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V--i~tD~ir~~L  199 (473)
                      ++-..|...|+|. -||+.||||+|||.||..+|..-+-.++  .++|.+-+-|
T Consensus       154 KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm  207 (439)
T KOG0739|consen  154 KFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM  207 (439)
T ss_pred             cchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence            4556677888886 6999999999999999999999985443  3678876654

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.031  Score=60.20  Aligned_cols=30  Identities=30%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      +.|||.||||+|||.+|+.||.+-|+.|-+
T Consensus       385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~  414 (630)
T KOG0742|consen  385 RNILFYGPPGTGKTMFARELARHSGLDYAI  414 (630)
T ss_pred             hheeeeCCCCCCchHHHHHHHhhcCCceeh
Confidence            489999999999999999999999998754

>cd01878 HflX HflX subfamily

Probab=94.87  E-value=0.063  Score=49.92  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|+|+|.+||||||+...|...
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcc
Confidence            58999999999999999988764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK13695 putative NTPase; Provisional

Probab=94.85  E-value=0.025  Score=52.08  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.|+|.|.+|+||||++..++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987765

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.022  Score=63.54  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.=||++||||||||.+|+++|..-|+.++.
T Consensus       543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis  575 (802)
T KOG0733|consen  543 DAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS  575 (802)
T ss_pred             CCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence            457889999999999999999999999887764

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.84  E-value=0.024  Score=51.51  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|+|+|+.+|||||+++.|...|
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998877

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.80  E-value=0.021  Score=49.64  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+..+
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            489999999999999999998765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.78  E-value=0.032  Score=49.29  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      .++.|.|++||||||++..|.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            478999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=94.78  E-value=0.049  Score=56.85  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=29.9

Q ss_pred             HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       151 ~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ...+...+.|..++|.|++|+||+|+|..+|+.+..
T Consensus        36 ~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         36 AQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             HHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            333445666889999999999999999999999865

>PRK13768 GTPase; Provisional

Probab=94.77  E-value=0.027  Score=55.74  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++++|+|.|++|+||||++..++..+
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHH
Confidence            36799999999999999999888766

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.73  E-value=0.05  Score=55.91  Aligned_cols=28  Identities=29%  Similarity=0.494  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...|..++|.|+||+|||++++.++..+
T Consensus        52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         52 GSRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456678999999999999999999876

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=94.73  E-value=0.24  Score=48.43  Aligned_cols=86  Identities=28%  Similarity=0.344  Sum_probs=51.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF  227 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf  227 (473)
                      +.+.|.|-|.=|+||||++..|+..|   |+.++..        ...+|+.+.... .++           ++.....-|
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~-~~~-----------~~~~e~lLf   69 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE-EKL-----------SPKAEALLF   69 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCc-cCC-----------CHHHHHHHH
Confidence            35789999999999999999999988   5554441        234444332110 000           111111222


Q ss_pred             HhcchhhHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994          228 VRECRIVRKGLAGDLKKAMKDGKPIIIEGIHL  259 (473)
Q Consensus       228 ~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL  259 (473)
                      ...   -...+...+..++.+|.-||.|-...
T Consensus        70 aad---R~~h~~~~i~pal~~g~vVI~DRy~~   98 (208)
T COG0125          70 AAD---RAQHLEEVIKPALKEGKVVICDRYVD   98 (208)
T ss_pred             HHH---HHHHHHHHHHHhhcCCCEEEECCccc
Confidence            211   11235677788899998888876443

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=94.72  E-value=0.035  Score=56.53  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+|+|+|++||||||+++.|. .+|+..+
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~   34 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE-DLGYYCV   34 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH-HcCCeEE
Confidence            489999999999999999996 5687655

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=94.70  E-value=0.052  Score=62.23  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=27.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.+..+||+|++|+||||+|+.|++.|++.
T Consensus        34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            34557788999999999999999999999864

>TIGR00101 ureG urease accessory protein UreG

Probab=94.69  E-value=0.033  Score=53.32  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      |..|.|+|++|+||||+...|...+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            67899999999999999999988763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=94.69  E-value=0.03  Score=57.02  Aligned_cols=28  Identities=43%  Similarity=0.604  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+++-|+||+|||++|+.+|+.+|.+++
T Consensus        45 ~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          45 HVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             CEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            5799999999999999999999997654

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.68  E-value=0.053  Score=59.97  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=27.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.+..+||+|++|+||||+|+.||+.++..
T Consensus        34 ~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~   65 (585)
T PRK14950         34 EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT   65 (585)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34556789999999999999999999998753

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=94.65  E-value=0.052  Score=61.81  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=28.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||+|++|+||||+|+.||..++..
T Consensus        36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133         36 SNKISHAYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            44567889999999999999999999999765

>PRK05973 replicative DNA helicase; Provisional

Probab=94.64  E-value=0.16  Score=50.49  Aligned_cols=28  Identities=18%  Similarity=0.214  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPN  188 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~  188 (473)
                      .+++|+|.||+|||+++..++...   |.+.
T Consensus        65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~v   95 (237)
T PRK05973         65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTG   95 (237)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            489999999999999999887644   6543

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=94.63  E-value=0.056  Score=59.82  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=28.4

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ...+.|..+||+|++|+||||+|+.||+.++..
T Consensus        33 ~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~   65 (563)
T PRK06647         33 ESNKIANAYIFSGPRGVGKTSSARAFARCLNCV   65 (563)
T ss_pred             HcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence            344567789999999999999999999999754

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.62  E-value=0.042  Score=53.52  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....+|.|.|++|+||||+|..++..
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            45679999999999999999999977

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK08181 transposase; Validated

Probab=94.60  E-value=0.049  Score=54.96  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++|+|++|+|||.||..++..+
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a  130 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLAL  130 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHH
Confidence            469999999999999999998654

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=94.59  E-value=0.038  Score=60.03  Aligned_cols=23  Identities=43%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      =|||.|+||+||||+|+.||.-+
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHH
Confidence            48999999999999999999877

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=94.59  E-value=0.1  Score=60.42  Aligned_cols=28  Identities=46%  Similarity=0.657  Sum_probs=25.3

Q ss_pred             cCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +++|. +++|+||+|+|||.+|..||..|
T Consensus       592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l  620 (852)
T TIGR03345       592 PRKPLGVFLLVGPSGVGKTETALALAELL  620 (852)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45676 78999999999999999999988

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd04163 Era Era subfamily

Probab=94.58  E-value=0.034  Score=47.88  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|.+.|++|+||||+...|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=94.54  E-value=0.11  Score=60.22  Aligned_cols=28  Identities=29%  Similarity=0.488  Sum_probs=24.4

Q ss_pred             cCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.+|. .++|+|++|+|||++|+.|+..+
T Consensus       594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l  622 (857)
T PRK10865        594 PNRPIGSFLFLGPTGVGKTELCKALANFM  622 (857)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45564 78999999999999999999877

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=94.54  E-value=0.051  Score=53.75  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++|.|++|+||||+++.++..+.
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            469999999999999999999873

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=94.53  E-value=0.064  Score=59.23  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=26.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.+..+||+|++|+||||+|+.||+.++.
T Consensus        34 ~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c   64 (559)
T PRK05563         34 QGKISHAYLFSGPRGTGKTSAAKIFAKAVNC   64 (559)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3455778999999999999999999999864

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=94.52  E-value=0.044  Score=49.51  Aligned_cols=29  Identities=34%  Similarity=0.425  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ...+|++.|.-|+||||+++.|++.+|+.
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            34699999999999999999999999875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK06893 DNA replication initiation factor; Validated

Probab=94.50  E-value=0.032  Score=54.19  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|+|+||+|||+++..+|..+
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999875

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.49  E-value=0.048  Score=55.27  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=27.5

Q ss_pred             HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       149 ~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++..++ +.++..+|-|+|+||+|||||...|...+
T Consensus        17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            3444444 45677899999999999999999999877

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.48  E-value=0.044  Score=52.08  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..|.+|.|+|++|+||||+...|...++
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=0.072  Score=58.93  Aligned_cols=29  Identities=28%  Similarity=0.499  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +-+++.|+||+|||+||..+|..-++|+|
T Consensus       539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFv  567 (744)
T KOG0741|consen  539 VSVLLEGPPGSGKTALAAKIALSSDFPFV  567 (744)
T ss_pred             eEEEEecCCCCChHHHHHHHHhhcCCCeE
Confidence            46999999999999999999999999986

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=94.47  E-value=0.053  Score=57.59  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC--CCeEE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN--LPNVL  190 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~Vi  190 (473)
                      -+.|||.|+||+|||.+|-.+|+.||  .|++.
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~   82 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVS   82 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence            46899999999999999999999998  66654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd01394 radB RadB

Probab=94.46  E-value=0.04  Score=52.23  Aligned_cols=26  Identities=38%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..+++|+|+||+||||++..+|...
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34699999999999999999999765

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.43  E-value=0.07  Score=59.10  Aligned_cols=31  Identities=39%  Similarity=0.474  Sum_probs=26.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+.|..+||+|++|+||||+|..||+.++.
T Consensus        34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c   64 (576)
T PRK14965         34 TGRVAHAFLFTGARGVGKTSTARILAKALNC   64 (576)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence            3455778999999999999999999999864

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.42  E-value=0.083  Score=54.46  Aligned_cols=26  Identities=35%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.+.+|+|.||+|||||...|.-...
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p~~~  189 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLPELN  189 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCchhh
Confidence            34889999999999999999976544

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.40  E-value=0.052  Score=59.04  Aligned_cols=32  Identities=41%  Similarity=0.442  Sum_probs=27.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.+..++|+|++|+||||+|+.+|..++..
T Consensus        34 ~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~   65 (486)
T PRK14953         34 LQRVSHAYIFAGPRGTGKTTIARILAKVLNCL   65 (486)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            34456788999999999999999999999753

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=94.38  E-value=0.033  Score=50.58  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .|-+.+|+|++|+||||+...|...|+-
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~   45 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRYALGG   45 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4569999999999999999999877743

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.36  E-value=0.056  Score=54.68  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       149 ~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++..+. ..+.+.+|.|.|++|+||||++..|+..+
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444443 34557799999999999999999998766

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PHA02624 large T antigen; Provisional

Probab=94.36  E-value=0.21  Score=56.17  Aligned_cols=29  Identities=24%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      -.+|+|.|++|+||||++..|.+.||-..
T Consensus       431 k~~il~~GPpnTGKTtf~~sLl~~L~G~v  459 (647)
T PHA02624        431 RRYWLFKGPVNSGKTTLAAALLDLCGGKS  459 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence            35999999999999999999999995443

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=94.35  E-value=0.13  Score=51.27  Aligned_cols=40  Identities=20%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE--cchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL--QTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi--~tD~ir~~  198 (473)
                      ++.-++|.|+||+|||.||..|+.++   |++++.  ..|.+.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            45579999999999999999999887   555433  35666654

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=94.34  E-value=0.064  Score=61.92  Aligned_cols=32  Identities=31%  Similarity=0.366  Sum_probs=27.7

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.+..+||.|++|+||||+|+.||+.|++.
T Consensus        33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         33 SGRINHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             hCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            34556779999999999999999999999763

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=94.33  E-value=0.079  Score=56.20  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .|.-+||.|++|+||||+|..||..+...
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            57789999999999999999999998764

>PRK04296 thymidine kinase; Provisional

Probab=94.31  E-value=0.038  Score=52.23  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++++|++|+||||++..++.++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999887

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.30  E-value=0.064  Score=50.54  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...-++|.|++|+|||.+|..++.++
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~   71 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEA   71 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence            34679999999999999999998766

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=94.30  E-value=0.072  Score=55.87  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .+...+.|.-+||.|++|+||+|+|..+|+.+-.
T Consensus        34 ~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc   67 (365)
T PRK07471         34 AYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA   67 (365)
T ss_pred             HHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence            3345667888999999999999999999999854

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.30  E-value=0.037  Score=52.35  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            489999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.29  E-value=0.034  Score=51.36  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|.|+|++|+||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []

Probab=94.25  E-value=0.23  Score=41.22  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             ccccchHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 011994           80 HYYVFSRFLLSRMLTVTK-----IPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRF  154 (473)
Q Consensus        80 h~ypFSRglLsR~L~~ag-----Va~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~  154 (473)
                      ...||+..-|.+.|..++     +....+..|+.++...|.+.+...|+.+++.+.+...|.+.++.+ +++.|.+.+.+
T Consensus         9 ~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~~~-~a~~yi~yr~~   87 (90)
T PF03477_consen    9 RVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVENALMEEGFYD-VARAYILYRNI   87 (90)
T ss_dssp             SEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTTHH-HHHHHHHHHHH
T ss_pred             cEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCChHH-HHHHHHHHHHH
Confidence            569999999999999998     789999999999999999888889999999999999998866444 57778877766


Q ss_pred             h
Q 011994          155 H  155 (473)
Q Consensus       155 ~  155 (473)
                      +
T Consensus        88 r   88 (90)
T PF03477_consen   88 R   88 (90)
T ss_dssp             H
T ss_pred             H
Confidence            5

In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=94.23  E-value=0.12  Score=55.11  Aligned_cols=119  Identities=18%  Similarity=0.167  Sum_probs=63.3

Q ss_pred             HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC---eEE------cchhHHHHHhhCCCCCCCCCccccccccChHH
Q 011994          152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP---NVL------QTDMVYELLRTSTDAPLSSSPVWARNFSSSEE  222 (473)
Q Consensus       152 ~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~---~Vi------~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~Ee  222 (473)
                      +.+.++.+-.-+++-|+||+||||||+.|+..-.-+   +|.      .+..+|..+..... ..   ....+..--.-+
T Consensus       154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~-~~---~l~krkTilFiD  229 (554)
T KOG2028|consen  154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN-EK---SLTKRKTILFID  229 (554)
T ss_pred             HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH-HH---hhhcceeEEEeH
Confidence            333344443357789999999999999999866433   332      12334443322100 00   000000000001


Q ss_pred             HHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCccccc-ccccCCCCCccccccC
Q 011994          223 LVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL-MDDDSKAPATTTEKTN  281 (473)
Q Consensus       223 lI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l-~~~~~r~~~~~~~k~~  281 (473)
                      -++.|.       +..++.+...++.|.-+.|.++.-+|.|-+ ..+..|=.-.+++|..
T Consensus       230 EiHRFN-------ksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~  282 (554)
T KOG2028|consen  230 EIHRFN-------KSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP  282 (554)
T ss_pred             Hhhhhh-------hhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence            123332       233444556667888788999999999953 4455555556666644

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.22  E-value=0.04  Score=51.93  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|||||||.+.|+..+
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.21  E-value=0.04  Score=51.84  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|||||||.+.|+..+
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=94.17  E-value=0.05  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..|++.|.+|+||||+...|....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999987543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=94.15  E-value=0.052  Score=50.99  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -.+++|+|+||+|||+++..++...
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999998654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.11  E-value=0.043  Score=51.76  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.08  E-value=0.043  Score=52.77  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999998644

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.08  E-value=0.044  Score=50.93  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998644

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.07  E-value=0.043  Score=52.58  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          28 EFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.07  E-value=0.044  Score=51.54  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.07  E-value=0.043  Score=51.89  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

>cd04154 Arl2 Arl2 subfamily

Probab=94.05  E-value=0.06  Score=48.68  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+..|++.|.+|+||||+...|...
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccC
Confidence            34567899999999999999988754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=94.03  E-value=0.053  Score=50.53  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+|.|+|.+||||||++..|...+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999999887

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=94.03  E-value=0.044  Score=51.90  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=94.01  E-value=0.062  Score=55.87  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .+++|.||||+|||+.|..+|+.|+.+
T Consensus        58 p~~LFyGPpGTGKTStalafar~L~~~   84 (346)
T KOG0989|consen   58 PHYLFYGPPGTGKTSTALAFARALNCE   84 (346)
T ss_pred             ceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence            378999999999999999999999764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.98  E-value=0.046  Score=52.49  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.054  Score=58.60  Aligned_cols=29  Identities=31%  Similarity=0.529  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .||+.||+|+|||.||..||+-|+.|+++
T Consensus       228 NvLllGPtGsGKTllaqTLAr~ldVPfaI  256 (564)
T KOG0745|consen  228 NVLLLGPTGSGKTLLAQTLARVLDVPFAI  256 (564)
T ss_pred             cEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence            68999999999999999999999999887

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.96  E-value=0.043  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.262  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++.|.|++|+|||||.+.|+..+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999998644

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.95  E-value=0.047  Score=51.32  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.93  E-value=0.049  Score=51.44  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998644

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=93.92  E-value=0.099  Score=52.86  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .+...+.|..++|+|+.|+||+|+|..+|+.+..
T Consensus        19 ~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c   52 (313)
T PRK05564         19 SIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILG   52 (313)
T ss_pred             HHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence            3345567889999999999999999999998854

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.92  E-value=0.049  Score=51.59  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.89  E-value=0.05  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+..+
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.87  E-value=0.05  Score=52.08  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998655

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06851 hypothetical protein; Provisional

Probab=93.87  E-value=0.073  Score=56.19  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ....+++|.|+||+||||+...++..+
T Consensus       212 ~~~~~~~i~G~pG~GKstl~~~i~~~a  238 (367)
T PRK06851        212 GVKNRYFLKGRPGTGKSTMLKKIAKAA  238 (367)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence            345789999999999999999999877

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.87  E-value=0.05  Score=51.70  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998644

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.87  E-value=0.052  Score=50.80  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.85  E-value=0.051  Score=51.78  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          27 EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            489999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=93.85  E-value=0.12  Score=51.64  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +|+|+|++||||||+...|...+.
T Consensus        82 lilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhC
Confidence            799999999999999998877663

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK12608 transcription termination factor Rho; Provisional

Probab=93.84  E-value=0.19  Score=53.45  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|.|++|+||||+++.|++.+
T Consensus       135 R~LIvG~pGtGKTTLl~~la~~i  157 (380)
T PRK12608        135 RGLIVAPPRAGKTVLLQQIAAAV  157 (380)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57999999999999999999877

>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=93.84  E-value=0.043  Score=52.39  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      +=|+|+|.+|+||||+|-.|.. .|... +++|.+.
T Consensus        19 ~GVLi~G~SG~GKS~lAl~Li~-rGh~l-vaDD~v~   52 (171)
T PF07475_consen   19 VGVLITGPSGIGKSELALELIK-RGHRL-VADDRVE   52 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EE-EESSEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCeE-EeCCEEE
Confidence            3589999999999999999986 46654 5777654

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=93.83  E-value=0.047  Score=59.13  Aligned_cols=26  Identities=35%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..|++.|+||+|||++|+.||..++.
T Consensus       195 ~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        195 KNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            36788999999999999999998853

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=93.81  E-value=0.082  Score=56.90  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=27.5

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|..+||.|++|+||||+|..+|+.+...
T Consensus        35 ~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~   66 (451)
T PRK06305         35 FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ   66 (451)
T ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            34557789999999999999999999998654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.80  E-value=0.048  Score=52.17  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCC
Confidence            489999999999999999998654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=93.79  E-value=0.053  Score=46.12  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~  182 (473)
                      |+|.|.+|+||||+...|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.79  E-value=0.054  Score=51.52  Aligned_cols=25  Identities=24%  Similarity=0.242  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01895 EngA2 EngA2 subfamily

Probab=93.77  E-value=0.059  Score=47.04  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      |+.|++.|.+|+||||+...|...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc
Confidence            667999999999999999999654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=93.75  E-value=0.05  Score=51.38  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          25 GEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3489999999999999999997654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=93.74  E-value=0.066  Score=52.29  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             cCCC-eEEEEEcCCCCcHHHHHHHHHHhcC--CC-eEEcchhHH
Q 011994          157 QRVP-LVILVCGTACVGKSTIATQLAQRLN--LP-NVLQTDMVY  196 (473)
Q Consensus       157 ~~~P-~iIlI~G~~GsGKSTlA~~LA~~Lg--~~-~Vi~tD~ir  196 (473)
                      ..+| +.|-++|++|||||+|..++.+.|.  ++ .|+-.|.+.
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t   52 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT   52 (202)
T ss_pred             hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence            4567 7899999999999999999887773  22 233455544

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.74  E-value=0.056  Score=50.94  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=93.73  E-value=0.055  Score=51.25  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3489999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=93.73  E-value=0.057  Score=50.92  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+++|+|++|+|||||...|.....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~   60 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAK   60 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5899999999999999999977653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=93.73  E-value=0.045  Score=51.65  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 011994          163 ILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      |+|.|+|||||||+...+....
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5899999999999999999875

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=93.72  E-value=0.058  Score=52.96  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..|+|+|++||||||+...|...+.
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             eEEEEECCCccccchHHHHHhhhcc
Confidence            5899999999999999999998884

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd00879 Sar1 Sar1 subfamily

Probab=93.72  E-value=0.095  Score=47.87  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +...|+|.|++|+||||+...|..
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345679999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=93.71  E-value=0.055  Score=53.00  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..|+|.|+||+|||++|+.|..-|.
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lLP   47 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLLP   47 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS-
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhCC
Confidence            4789999999999999999998763

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=93.70  E-value=0.051  Score=50.38  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .|+|.|+.|||||||++.|-.
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999998854

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=93.70  E-value=0.054  Score=51.72  Aligned_cols=25  Identities=36%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --++.|.|++|||||||.+.|+..+
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        26 GEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3489999999999999999998655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.69  E-value=0.053  Score=53.99  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|+|||||||||+.+.|. .|
T Consensus        29 evv~iiGpSGSGKSTlLRclN-~L   51 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLN-GL   51 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHH-CC
Confidence            489999999999999999885 45

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=93.69  E-value=0.11  Score=57.44  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ...+.|..+||+|++|+||||+|+.||+.+..
T Consensus        31 ~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c   62 (535)
T PRK08451         31 DNNRLAHAYLFSGLRGSGKTSSARIFARALVC   62 (535)
T ss_pred             HcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            34556788999999999999999999999853

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.67  E-value=0.058  Score=50.51  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999998754

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=93.67  E-value=0.061  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .|+++|.+|+||||+..+|...-
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~   24 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGR   24 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999997643

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.67  E-value=0.06  Score=59.58  Aligned_cols=35  Identities=23%  Similarity=0.438  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQT  192 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~t  192 (473)
                      +-|.=||++||||+|||.||+++|-.-|.+++..+
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s  369 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS  369 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence            45888999999999999999999999999988754

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.66  E-value=0.077  Score=59.40  Aligned_cols=30  Identities=33%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +.+..+||.|++|+||||+|+.||+.|+..
T Consensus        36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~   65 (620)
T PRK14948         36 RIAPAYLFTGPRGTGKTSSARILAKSLNCL   65 (620)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence            345578999999999999999999999764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=93.66  E-value=0.058  Score=51.45  Aligned_cols=25  Identities=32%  Similarity=0.238  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        36 Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         36 GETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            4589999999999999999998654

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.66  E-value=0.058  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999998654

>cd04159 Arl10_like Arl10-like subfamily

Probab=93.65  E-value=0.054  Score=46.46  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 011994          163 ILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~  183 (473)
                      |.|+|++|+||||+...|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999653

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=93.64  E-value=0.058  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+++|+|++|+||||+.+.++.
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            5899999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=93.63  E-value=0.058  Score=52.03  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=93.62  E-value=0.061  Score=46.81  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+|.|.+|+||||+..+|...
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.62  E-value=0.084  Score=59.23  Aligned_cols=31  Identities=45%  Similarity=0.533  Sum_probs=27.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .+.+..+||.|++|+||||+|..||+.++..
T Consensus        35 ~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~   65 (624)
T PRK14959         35 NRVAPAYLFSGTRGVGKTTIARIFAKALNCE   65 (624)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence            3446789999999999999999999999764

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=93.62  E-value=0.059  Score=50.94  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13764 ATPase; Provisional

Probab=93.60  E-value=0.095  Score=58.59  Aligned_cols=25  Identities=40%  Similarity=0.446  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..|+|+|++||||||+++.|+..+.
T Consensus       258 ~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        258 EGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4699999999999999999998874

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=93.60  E-value=0.062  Score=49.47  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+||||+.+.|+..+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=93.60  E-value=0.059  Score=51.13  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=93.58  E-value=0.059  Score=51.72  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -++.|.|++|||||||.+.|+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        27 EIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999865

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=93.58  E-value=0.068  Score=53.03  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..+++|.|+||+||||+|.+++..
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~   59 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVT   59 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3469999999999999999998764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=93.58  E-value=0.06  Score=51.91  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=93.57  E-value=0.062  Score=50.56  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          26 GEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCc
Confidence            3589999999999999999998644

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=93.57  E-value=0.064  Score=49.63  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            488999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=93.56  E-value=0.061  Score=51.75  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        27 GEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3489999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.54  E-value=0.15  Score=52.27  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMVYELL  199 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~ir~~L  199 (473)
                      -..|+=+++.||||||||.|+...|.....  -.|..+.++.+.+
T Consensus       186 idpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl  230 (408)
T KOG0727|consen  186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL  230 (408)
T ss_pred             CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence            356888999999999999999999987754  3444666666544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=93.52  E-value=0.084  Score=54.14  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.-.+|-|+|.||+|||||...|...+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345789999999999999999998876

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.51  E-value=0.061  Score=54.06  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -.+.|.|+|||||||+-+.+|--.
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998544

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.50  E-value=0.085  Score=42.46  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.+|.|++|+||||+..++..-|
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999998876543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=93.49  E-value=0.064  Score=51.90  Aligned_cols=25  Identities=20%  Similarity=0.221  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         29 GEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999998654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.48  E-value=0.064  Score=51.20  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=93.47  E-value=0.078  Score=59.44  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|.-|+|.|+||+||||+++.|+..++.+++.
T Consensus       184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~  215 (644)
T PRK10733        184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT  215 (644)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            45669999999999999999999999988764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=93.47  E-value=0.064  Score=50.76  Aligned_cols=24  Identities=29%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=93.47  E-value=0.23  Score=50.71  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..|+|+|++||||||++..|...+
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999999876

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd00876 Ras Ras family

Probab=93.46  E-value=0.063  Score=46.62  Aligned_cols=21  Identities=38%  Similarity=0.601  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 011994          163 ILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~  183 (473)
                      |+|+|++|+||||+...|...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998643

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=93.45  E-value=0.093  Score=54.84  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|..++|.|+||.|||.+|+.++..+|+.++.
T Consensus       164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~  196 (388)
T KOG0651|consen  164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK  196 (388)
T ss_pred             CCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence            468899999999999999999999999987664

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.44  E-value=0.073  Score=51.98  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      |-+..|.|++||||||+...|+--|+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~   51 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGI   51 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence            568899999999999999999887764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=93.44  E-value=0.082  Score=50.42  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -.+++|.|+||+|||+++..++...
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~   47 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEA   47 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999998744

>cd00154 Rab Rab family

Probab=93.44  E-value=0.068  Score=45.68  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .|+++|.+|+||||+...|..
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.40  E-value=0.066  Score=51.89  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|||||||.+.|+..+
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         29 NTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3489999999999999999998754

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=93.40  E-value=0.07  Score=47.28  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 011994          163 ILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      |+|+|.+|+|||||...|....
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~   23 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLF   23 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhc
Confidence            7899999999999999997654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=93.40  E-value=0.068  Score=51.26  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         33 GEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            3489999999999999999998643

>CHL00206 ycf2 Ycf2; Provisional

Probab=93.39  E-value=0.074  Score=65.83  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.=||+.||||||||.+|+.||...+++++-
T Consensus      1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIs 1660 (2281)
T CHL00206       1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFIT 1660 (2281)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHhcCCceEE
Confidence            346789999999999999999999999998763

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.39  E-value=0.15  Score=48.86  Aligned_cols=142  Identities=17%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +|...++.|++|+||||+-..+-..+ +.-.++.+|.+-..+-.           |+..       ...+  +|-.+   
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p-----------~~p~-------~~~i--~A~r~---   57 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISP-----------DNPT-------SAAI--QAARV---   57 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCC-----------CCch-------HHHH--HHHHH---
Confidence            46788999999999999976554444 33344578877664211           1110       0011  11111   


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCcccccccccCCCCCCCCCC
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQP  317 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      ..+.+...++.|.+++.|.+.--|.+...  +         ++.                                    
T Consensus        58 ai~~i~~~I~~~~~F~~ETtLS~~s~~~~--i---------k~A------------------------------------   90 (187)
T COG4185          58 AIDRIARLIDLGRPFIAETTLSGPSILEL--I---------KTA------------------------------------   90 (187)
T ss_pred             HHHHHHHHHHcCCCcceEEeeccchHHHH--H---------HHH------------------------------------
Confidence            23455667899999999998887777522  0         011                                    


Q ss_pred             CCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecchhhHHHHHHhhhhh
Q 011994          318 STGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTH  397 (473)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~dh~~lle~~~~~r  397 (473)
                                                                        .+.+=+|+=+.+.+...+-.  +|+ +..|
T Consensus        91 --------------------------------------------------k~~Gf~I~L~y~~i~~~ela--vER-Vk~R  117 (187)
T COG4185          91 --------------------------------------------------KAAGFYIVLNYIVIDSVELA--VER-VKLR  117 (187)
T ss_pred             --------------------------------------------------HhCCeEEEEEEEEeCcHHHH--HHH-HHHH
Confidence                                                              12456899999999998766  655 6777


Q ss_pred             -cccccccccch--HHHHhhHHHHHHHHh
Q 011994          398 -TFGDKCLVQNK--DELVSKLKTIQNYLC  423 (473)
Q Consensus       398 -a~~~~~~~~~~--~~~i~nl~~IQ~yLc  423 (473)
                       +.|.-..|.|+  +.|-+.|-.+--||-
T Consensus       118 Va~GGH~IpED~Ir~RY~rsle~l~~~l~  146 (187)
T COG4185         118 VAKGGHDIPEDKIRRRYRRSLELLAQALT  146 (187)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence             56777788887  467777777777653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=93.39  E-value=0.068  Score=51.90  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         32 NQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3489999999999999999998643

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.39  E-value=0.07  Score=55.11  Aligned_cols=25  Identities=36%  Similarity=0.452  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      -+|+|+|++||||||+...|...+.
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4899999999999999999987664

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=93.39  E-value=0.069  Score=50.09  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -++.|.|++|+||||+.+.|+..
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=93.38  E-value=0.18  Score=55.28  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .|+|.|+||+|||++|+.|+...+
T Consensus        41 hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         41 SVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             CEEEECCCChhHHHHHHHHHHHhc
Confidence            589999999999999999998764

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=93.37  E-value=0.068  Score=55.98  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -+|+|+|++||||||+...|...+
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998876

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=93.34  E-value=0.068  Score=52.57  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

>PRK10646 ADP-binding protein; Provisional

Probab=93.33  E-value=0.093  Score=49.11  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+|++.|.=|+||||+++.|++.||+.
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~   55 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ   55 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3589999999999999999999999975

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=93.33  E-value=0.07  Score=51.01  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          28 GETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            3489999999999999999998665

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=93.32  E-value=0.071  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+++|.+|+||||+...|...
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998643

Rab GTPases are implicated in vesicle trafficking.

>PRK10908 cell division protein FtsE; Provisional

Probab=93.31  E-value=0.072  Score=50.73  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         28 GEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.30  E-value=0.071  Score=51.68  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         29 GAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3489999999999999999998654

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=93.30  E-value=0.17  Score=52.30  Aligned_cols=30  Identities=33%  Similarity=0.502  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+|.+-|+-|+|||++|..||++||+.++
T Consensus        71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hf  100 (393)
T KOG3877|consen   71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHF  100 (393)
T ss_pred             ceEEEEeCCcccCchhHHHHHHHHhCCccc
Confidence            469999999999999999999999997654

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=93.29  E-value=0.075  Score=46.93  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .|+|.|.+|+||||+..+|..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999975

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=93.27  E-value=0.073  Score=51.33  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+||||+.+.|+..+
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13974 thymidylate kinase; Provisional

Probab=93.27  E-value=0.083  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+|.|.|++||||||++..|+..|.
T Consensus         4 ~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          4 KFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999884

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=93.26  E-value=0.095  Score=48.42  Aligned_cols=32  Identities=22%  Similarity=0.478  Sum_probs=25.2

Q ss_pred             HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       151 ~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +..+...++...|+|.|++||||||+...|..
T Consensus         5 ~~~~~~~~~~~~ililGl~~sGKTtll~~l~~   36 (175)
T PF00025_consen    5 LSKLKSKKKEIKILILGLDGSGKTTLLNRLKN   36 (175)
T ss_dssp             HHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred             HHHhcccCcEEEEEEECCCccchHHHHHHhhh
Confidence            33444445667899999999999999999964

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=93.23  E-value=0.077  Score=48.99  Aligned_cols=25  Identities=32%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+||||+.+.|+..+
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3489999999999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.23  E-value=0.069  Score=55.84  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.|.||+||||||+-+.+|--.
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=93.23  E-value=0.074  Score=51.24  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         27 GEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998654

>cd01862 Rab7 Rab7 subfamily

Probab=93.21  E-value=0.074  Score=47.11  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|++.|.+|+||||++..|...
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=93.21  E-value=0.083  Score=47.73  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|+|+|.+|+||||+...|...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999988743

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00157 Rho Rho (Ras homology) family

Probab=93.20  E-value=0.081  Score=46.83  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+|.|.+|+||||+..+|...
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=93.18  E-value=0.076  Score=51.19  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-++.|.|++|+|||||.+.|+..+
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         29 GEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998755

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=93.18  E-value=0.075  Score=52.09  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+|||||.+.|+..+
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            489999999999999999998654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=93.17  E-value=0.076  Score=50.78  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .-++.|+|++|+|||||.+.|+..+.
T Consensus        33 Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          33 GQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCccC
Confidence            35899999999999999999986553

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	9e-09
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	6e-08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	7e-08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	4e-06
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	5e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	1e-04
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	1e-04
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	3e-04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	4e-04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 78/509 (15%), Positives = 164/509 (32%), Gaps = 147/509 (28%)

Query: 40  EDSEDK-SSIFS---LSHIKLNCRNTVSKYDFV----------KVKVWLGDNADHYYVFS 85
           +D +D   SI S   + HI +  ++ VS    +           V+ ++ +     Y   
Sbjct: 36  KDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--- 91

Query: 86  RFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLL---DVSQSDLEANLFK-LMERRGYG 141
           +FL+S + T  + P+ +      +  +L  DN +    +VS+      L + L+E R   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--- 148

Query: 142 EEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQR-------------LNLPN 188
                          + V    L+ G    GK+ +A  +                LNL N
Sbjct: 149 -------------PAKNV----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 189 VLQTDMVYELLRT---STDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKA 245
               + V E+L+      D   +S      + SS+ +L    ++   + R   +   +  
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRS----DHSSNIKLRIHSIQA-ELRRLLKSKPYENC 246

Query: 246 MKDGKPIIIEGIHLDPSIY-LMDDDSKAPATTTEKTNSES--------VPSDDNPVTQVE 296
           +     +++  +  +   +   +   K   TT  K  ++         +  D + +T   
Sbjct: 247 L-----LVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 297 SNSASVCVSDWENGNNS--PEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKD 354
               S+    + +      P +       +  +++ IA+S+   +          +  K 
Sbjct: 301 DEVKSLL-LKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGL-------ATWDNWKH 349

Query: 355 PGVDR-----NTSVKKEKSG------------PDPIIIPI-VLK--------------MA 382
              D+      +S+   +              P    IP  +L               + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 383 DFDHKALLEEWILTHTFGD-------KCLVQNKDELVSKLKTIQNY--LCSFKSQGVTVV 433
                +L+E+     T          K  ++N+  L   +  + +Y    +F S  +   
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLI-- 465

Query: 434 NVSATTFPQTLD--WLH--GYLLQCIEKG 458
                  P  LD  +    G+ L+ IE  
Sbjct: 466 -------PPYLDQYFYSHIGHHLKNIEHP 487

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFS 218
             ++L+ G    GKSTIA  LA    +P V   +D ++  ++     P            
Sbjct: 9   GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLP--------- 59

Query: 219 SSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGI----HLDP 261
                  +  ++ R++ +  A    +  K+G  +I++G+     L  
Sbjct: 60  -------QSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPA 99

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSE 221
           + ++ G A VGKST   +LA +L+    ++ D++  ++      P               
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPW-------------- 49

Query: 222 ELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGI 257
               E      +  K +       +     ++++ I
Sbjct: 50  ----ESDELLALTWKNITDLTVNFLLAQNDVVLDYI 81

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 17/102 (16%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSS 219
           P +I+V G    GK+T++  LA  L LP +L  D   E++                    
Sbjct: 5   PALIIVTGHPATGKTTLSQALATGLRLP-LLSKDAFKEVMFDGLGWSDREWSRRVG---- 59

Query: 220 SEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDP 261
                             L       ++ G+ +I+E      
Sbjct: 60  ------------ATAIMMLYHTAATILQSGQSLIMESNFRVD 89

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLS---SSPVWAR 215
              +I + G   VGK+  A  L +RL    V + + + + LR  T          P+W  
Sbjct: 4   RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIP 63

Query: 216 NFSSSEELVTEFVRE--------CRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPS 262
                 + +    RE          I        L   +K  + + +    L   
Sbjct: 64  LML---DALQYASREAAGPLIVPVSISDTARHRRLMSGLK-DRGLSVHHFTLIAP 114

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLP 187
           +I++ G  C  KST+A +L++ L  P
Sbjct: 3   LIILEGPDCCFKSTVAAKLSKELKYP 28

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSS 220
           +I++ G +  GKS I   L   L  P +    D + E +     +        A    S 
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 221 EELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDP 261
                    E R +    A  +    + G  III+ + L  
Sbjct: 65  GP-------EFRALEGAWAEGVVAMARAGARIIIDDVFLGG 98

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187
            +R P  I+V G +  GKS++   +A+    P
Sbjct: 14  VRRFPGSIVVMGVSGSGKSSVGEAIAEACGYP 45

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187
           M T         + ++ G +  GKS +A+++A +L+  
Sbjct: 1   MST---TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAA 35

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197
                +   IL+ GT  VGK+T+  +LA +  L  +   D+  E
Sbjct: 5   SPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE 48

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 141 GEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187
           G E +    MMT          ++V G +  GK+TIA  +A    L 
Sbjct: 14  GTENLYFQSMMTGEP----TRHVVVMGVSGSGKTTIAHGVADETGLE 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.79
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.78
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.76
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.75
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.72
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.61
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.6
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.59
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.59
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.58
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.55
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.55
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.55
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.55
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.54
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.53
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.51
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.5
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.49
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.49
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.48
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.47
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.42
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.42
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.37
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.37
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.35
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.31
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.3
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.3
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.3
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.27
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.18
1via_A	175	Shikimate kinase; structural genomics, transferase	98.18
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.17
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.17
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.16
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.14
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.11
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.1
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.07
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.06
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.01
2og2_A	359	Putative signal recognition particle receptor; nuc	97.98
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.97
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.97
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.95
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.94
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.92
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.92
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.9
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.9
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.89
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.86
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.84
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.84
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.83
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.83
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.81
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.81
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.8
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.78
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.78
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.77
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.76
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.75
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.75
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.75
2xxa_A	433	Signal recognition particle protein; protein trans	97.73
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.72
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.71
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.69
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.67
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.67
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.67
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.67
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.64
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.64
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.64
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.61
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.61
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.61
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.58
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.57
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.55
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.53
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	97.52
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.52
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.48
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.47
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.46
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.42
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.42
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.41
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.39
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.36
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.34
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.32
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.32
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.28
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.27
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.25
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.21
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.12
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.12
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.11
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.08
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.07
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.05
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.04
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.02
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.01
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.99
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.93
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.92
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.92
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.92
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.9
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.89
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.89
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.89
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.89
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.87
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.84
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.82
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.78
3bos_A	242	Putative DNA replication factor; P-loop containing	96.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.74
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.73
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.73
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.7
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.67
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.65
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.65
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.64
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.64
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.61
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.61
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.6
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.58
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.57
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.57
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.56
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.54
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.54
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.54
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.53
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.5
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.5
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.49
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.49
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.48
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.48
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.46
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.45
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.43
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.4
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.4
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.37
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.34
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.31
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.31
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.3
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.28
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.27
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.26
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.24
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.22
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.22
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.16
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.15
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.14
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.07
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.05
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.02
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.0
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.0
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.98
3co5_A	143	Putative two-component system transcriptional RES	95.98
3pvs_A	447	Replication-associated recombination protein A; ma	95.98
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.97
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.95
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.95
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.93
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.91
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.87
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.87
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.83
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.82
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.8
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.79
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.7
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.63
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.61
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.59
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.59
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.58
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.58
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.55
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.48
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.47
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.45
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.44
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.43
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.42
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.42
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.42
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.41
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.38
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.33
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.3
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.29
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.28
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.27
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.25
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.2
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.13
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.12
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.11
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.11
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.06
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.04
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.94
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.89
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.88
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.88
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.82
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.81
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.81
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.78
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.61
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.6
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.58
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.55
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.54
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.54
2qgz_A	308	Helicase loader, putative primosome component; str	94.5
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.33
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.33
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.27
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.27
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.19
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.18
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.18
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.15
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.07
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.03
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.02
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.01
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.99
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.98
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.98
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	93.93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.92
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.9
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.88
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.88
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.8
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.77
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.71
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.7
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.7
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.7
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.68
1g6h_A	257	High-affinity branched-chain amino acid transport	93.66
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.66
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.66
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.65
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.65
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.62
2fna_A	357	Conserved hypothetical protein; structural genomic	93.61
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.59
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.58
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.55
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.53
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.52
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.52
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.46
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.46
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.44
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.44
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.43
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.38
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.37
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.36
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.35
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.34
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.34
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.33
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.31
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	93.31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.3
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.3
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.3
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.3
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.26
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.25
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.24
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.24
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.24
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.24
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.23
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.18
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.14
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.08
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	93.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.04
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.96
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	92.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.93
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.86
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.84
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	92.82
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	92.81
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.81
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.8
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.78
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.78
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	92.77
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.76
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.71
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.71
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	92.71
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.71
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.66
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.66
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.65
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.63
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.59
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	92.58
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.57
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.55
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.53
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	92.52
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	92.52
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.48
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.46
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.43
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.42
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	92.33
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.33
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	92.28
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.26
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	92.25
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.23
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.22
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.21
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	92.2
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.16
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.15
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	92.1
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.1
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	92.09
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	92.06
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	92.05
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	92.04
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.01
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.98
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.97
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.9
2z43_A	324	DNA repair and recombination protein RADA; archaea	91.89
3end_A	307	Light-independent protochlorophyllide reductase ir	91.8
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.8
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	91.77
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.74
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.74
1u94_A	356	RECA protein, recombinase A; homologous recombinat	91.73
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.7
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.66
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.65
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	91.63
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.61
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	91.58
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.58
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	91.53
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.53
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.52
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.5
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.49
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	91.43
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.43
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	91.41
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	91.37
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.34
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.32
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.3
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.3
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	91.27
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	91.26
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	91.24
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.23
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.21
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	91.17
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	91.17
2r6a_A	454	DNAB helicase, replicative helicase; replication,	91.14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.12
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.01
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	90.99
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	90.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.88
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	90.83
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	90.79
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	90.73
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	90.66
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	90.59
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.57
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.54
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.51
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.51
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.41
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	90.39
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.36
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.32
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	90.27
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	89.7
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.16
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	90.16
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	90.15
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.14
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	89.99
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	89.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.8
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.8
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	89.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	89.73
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.72
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	89.57
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	89.55
1xp8_A	366	RECA protein, recombinase A; recombination, radior	89.53
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	89.45
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	89.31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.22
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	89.2
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	89.18
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	89.16
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	89.15
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	89.13
3io5_A	333	Recombination and repair protein; storage dimer, i	89.12
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	89.12
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	89.03
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	88.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.92
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	88.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	88.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	88.83
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	88.8
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	88.76
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	88.71
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.65
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.65
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	88.64
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	88.55
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	88.53
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.52
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	88.47
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	88.4
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	88.2

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.79  E-value=8.6e-09  Score=97.00  Aligned_cols=82  Identities=18%  Similarity=0.353  Sum_probs=65.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-H
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-A  239 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~  239 (473)
                      |+|+|.|+|||||+|+|..|++++|++++..+|.+|+.+....               .....+..|...+..|...+ .
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t---------------~lg~~~~~~~~~G~lvpd~iv~   65 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGT---------------PLGKKAKEYMERGELVPDDLII   65 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTC---------------HHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcC---------------hhhhhHHHHHhcCCcCCHHHHH
Confidence            5899999999999999999999999999888899998876421               11235677888887887775 5


Q ss_pred             HHHHHHHhCCCcEEEEcc
Q 011994          240 GDLKKAMKDGKPIIIEGI  257 (473)
Q Consensus       240 ~~IekaL~eG~sVIIEGv  257 (473)
                      ..+...+....-+|+||.
T Consensus        66 ~lv~~~l~~~~~~ilDGf   83 (206)
T 3sr0_A           66 ALIEEVFPKHGNVIFDGF   83 (206)
T ss_dssp             HHHHHHCCSSSCEEEESC
T ss_pred             HHHHHhhccCCceEecCC
Confidence            667778887777889884

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.78  E-value=1.6e-08  Score=88.74  Aligned_cols=88  Identities=20%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH-hcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ-RLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~-~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +|.+|+|+|+|||||||+|+.|+. .+|+.++ .+|.+++.+.+..       ..|...|...  . ..      .+...
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i-~~d~~r~~~~~~~-------~~~~~~~~~~--~-~~------~~~~~   63 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNI-NRDDYRQSIMAHE-------ERDEYKYTKK--K-EG------IVTGM   63 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEE-CHHHHHHHHTTSC-------CGGGCCCCHH--H-HH------HHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEe-cHHHHHHHhhCCC-------ccchhhhchh--h-hh------HHHHH
Confidence            478999999999999999999998 6888764 7899988764321       1121111100  0 00      11222


Q ss_pred             HHHHHHHHH---hCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAM---KDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL---~eG~sVIIEGvhL~Pel  263 (473)
                      +...+..++   ..|..||+||++..+..
T Consensus        64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~~   92 (181)
T 1ly1_A           64 QFDTAKSILYGGDSVKGVIISDTNLNPER   92 (181)
T ss_dssp             HHHHHHHHHTSCSSCCEEEECSCCCSHHH
T ss_pred             HHHHHHHHHhhccCCCeEEEeCCCCCHHH
Confidence            345566777   88999999998876543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.76  E-value=3.9e-08  Score=87.55  Aligned_cols=84  Identities=24%  Similarity=0.394  Sum_probs=57.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      .+|.+|+|+|+|||||||+++.|+.++|+.++ ..|.+++.+.....        +.     .......+.   ..+...
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i-~~D~~~~~~~~~~~--------~~-----~~~~~~~~~---~~~~~~   65 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLL-SKDAFKEVMFDGLG--------WS-----DREWSRRVG---ATAIMM   65 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHHHHHHC--------CC-----SHHHHHHHH---HHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEe-cHHHHHHHHHHhcC--------cc-----chHHHHHhh---HHHHHH
Confidence            46789999999999999999999999999875 67888876543111        00     011111111   112333


Q ss_pred             HHHHHHHHHhCCCcEEEEccc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIH  258 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvh  258 (473)
                      +...+...+..|..||+|+.+
T Consensus        66 ~~~~~~~~l~~g~~vi~d~~~   86 (193)
T 2rhm_A           66 LYHTAATILQSGQSLIMESNF   86 (193)
T ss_dssp             HHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHhCCCeEEEecCC
Confidence            445566778899999999976

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.75  E-value=3.7e-08  Score=96.42  Aligned_cols=113  Identities=15%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             ccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhHHHH
Q 011994          120 LDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMVYEL  198 (473)
Q Consensus       120 ~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg-~~~Vi~tD~ir~~  198 (473)
                      ..++.+++...+.+++...            ........+|.+|+|+|+|||||||+|+.|+.+++ ...+++.|.+|..
T Consensus         5 ~~~s~~~~~~~~~~~~~~~------------l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~   72 (287)
T 1gvn_B            5 VNFTDKQFENRLNDNLEEL------------IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ   72 (287)
T ss_dssp             TCCCHHHHHHHHHHHHHHH------------HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHH------------hccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence            4556677777776666541            11122345689999999999999999999999983 3344588988854


Q ss_pred             HhhCCCCCCCCCccccccccChHHHHHHHHhcc----hhhHhH-HHHHHHHHHhCCCcEEEEcccCCcc
Q 011994          199 LRTSTDAPLSSSPVWARNFSSSEELVTEFVREC----RIVRKG-LAGDLKKAMKDGKPIIIEGIHLDPS  262 (473)
Q Consensus       199 Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~----~~V~eg-L~~~IekaL~eG~sVIIEGvhL~Pe  262 (473)
                      +.+.                  ..++..|....    ...... ....++.++..|.+||+|+++..+.
T Consensus        73 ~~~~------------------~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~~vIld~~~~~~~  123 (287)
T 1gvn_B           73 HPNF------------------DELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD  123 (287)
T ss_dssp             STTH------------------HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCCCSH
T ss_pred             chhh------------------HHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence            2110                  00111111100    001111 2345566788999999999988776

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.72  E-value=2.2e-08  Score=95.45  Aligned_cols=86  Identities=21%  Similarity=0.329  Sum_probs=61.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK  236 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e  236 (473)
                      .++|.+|+|.|+|||||+|+|..|++++|++++..+|.+|+.+....       +        ....+..|...+..|..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t-------~--------lg~~~~~~~~~G~lVpd   90 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGS-------P--------KGKELKAMMERGELVPL   90 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCC-------H--------HHHHHHHHHHHTCCCCH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCC-------c--------hHHHHHHHHhcCCCCCH
Confidence            45788999999999999999999999999999877899998765321       1        12356677776666655


Q ss_pred             HH-HHHHHHHH----hCCCcEEEEcc
Q 011994          237 GL-AGDLKKAM----KDGKPIIIEGI  257 (473)
Q Consensus       237 gL-~~~IekaL----~eG~sVIIEGv  257 (473)
                      .+ ...+...+    ..+.-+|+||.
T Consensus        91 e~~~~lv~~~l~~~~~~~~g~ilDGf  116 (217)
T 3umf_A           91 EVVLALLKEAMIKLVDKNCHFLIDGY  116 (217)
T ss_dssp             HHHHHHHHHHHHHHTTTCSEEEEETB
T ss_pred             HHHHHHHHHHHhhccccccCcccccC
Confidence            53 23333333    34556899983

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.61  E-value=1.2e-07  Score=83.79  Aligned_cols=41  Identities=27%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE-cchhHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL-QTDMVYELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi-~tD~ir~~L  199 (473)
                      +|.+|+|+|+|||||||+|+.|+++++.+++. ..|.+++.+
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~   43 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM   43 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc
Confidence            46799999999999999999999999988663 578777653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.60  E-value=1.1e-07  Score=84.21  Aligned_cols=41  Identities=20%  Similarity=0.393  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      +|++|+|.|+|||||||+|+.|++.+|++++..+|.++..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~   42 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER   42 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence            47899999999999999999999999999875556666654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.59  E-value=1.6e-07  Score=83.74  Aligned_cols=85  Identities=16%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcc-----h
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVREC-----R  232 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~-----~  232 (473)
                      .++.+|+|.|++||||||+|+.|++++|++++..+|.++.......       ..        ...+..+...+     .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~-------~~--------~~~i~~~~~~g~~~~~~   71 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGS-------AR--------GKKLSEIMEKGQLVPLE   71 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTC-------HH--------HHHHHHHHHTTCCCCHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCC-------hH--------HHHHHHHHHcCCcCCHH
Confidence            3567999999999999999999999999998766666666543210       00        01111111111     1


Q ss_pred             hhHhHHHHHHHHHHhCCCcEEEEcc
Q 011994          233 IVRKGLAGDLKKAMKDGKPIIIEGI  257 (473)
Q Consensus       233 ~V~egL~~~IekaL~eG~sVIIEGv  257 (473)
                      .+...+...+...+..|..+|+||.
T Consensus        72 ~~~~~~~~~i~~~~~~~~~vi~d~~   96 (196)
T 2c95_A           72 TVLDMLRDAMVAKVNTSKGFLIDGY   96 (196)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred             HHHHHHHHHHHhccccCCcEEEeCC
Confidence            1222344555566778899999985

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.59  E-value=1.1e-07  Score=90.21  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=58.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK  236 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e  236 (473)
                      ..+|++|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+....       +        ....+..+......+..
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~-------~--------~g~~i~~~~~~g~~~~~   90 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKT-------E--------LGLKIKNIINEGKLVDD   90 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSS-------H--------HHHHHHHHHHTTCCCCH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccc-------h--------HHHHHHHHHhcCCCCcH
Confidence            45789999999999999999999999999999877788888654211       0        11234444444433333


Q ss_pred             HH-HHHHHHHHhC---CCcEEEEc
Q 011994          237 GL-AGDLKKAMKD---GKPIIIEG  256 (473)
Q Consensus       237 gL-~~~IekaL~e---G~sVIIEG  256 (473)
                      .+ ...+...+..   +..+|+||
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~ildg  114 (243)
T 3tlx_A           91 QMVLSLVDEKLKTPQCKKGFILDG  114 (243)
T ss_dssp             HHHHHHHHHHTTSGGGSSEEEEES
T ss_pred             HHHHHHHHHHHhcccccCCEEecC
Confidence            32 3344455543   77799998

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.58  E-value=1.8e-07  Score=83.69  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +|++|+|+|++||||||+|+.|++++|+.++..+|.++..+.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~   52 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELA   52 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHH
Confidence            467999999999999999999999999998755666676553

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.55  E-value=2.7e-07  Score=81.55  Aligned_cols=43  Identities=19%  Similarity=0.299  Sum_probs=36.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .+|.+|+|+|++||||||+|+.|+.++|+.++..+|.+++.+.
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~   46 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQ   46 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHh
Confidence            3578999999999999999999999999988755566776653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.55  E-value=1.5e-07  Score=86.85  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +++++|+|.|+|||||||+|+.|+.++|+.++..+|.+++.+.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~   44 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIA   44 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHH
Confidence            4578999999999999999999999999998766677787544

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.55  E-value=2.1e-07  Score=85.06  Aligned_cols=41  Identities=24%  Similarity=0.470  Sum_probs=36.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|+|+|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~   41 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKN   41 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhc
Confidence            36899999999999999999999999998777888887654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.55  E-value=1.3e-07  Score=81.44  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhc-chhhHhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRE-CRIVRKGLA  239 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q-~~~V~egL~  239 (473)
                      ++|+|+|+|||||||+|+.| ..+|+.++..+|.+++.+....   .    .|.    ........+... ..   ..+.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~---~----~~~----~~~~~~~~~~~~~~~---~~~~   66 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA---K----PGE----RLMDFAKRLREIYGD---GVVA   66 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC----------C----CHHHHHHHHHHHHCT---THHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC---C----Chh----HHHHHHHHHHhhCCH---HHHH
Confidence            58999999999999999999 9999998877888887654421   0    011    111222222221 11   1123


Q ss_pred             HHHHHHH--hCCCcEEEEcccCCccc
Q 011994          240 GDLKKAM--KDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       240 ~~IekaL--~eG~sVIIEGvhL~Pel  263 (473)
                      ..+...+  ..+..||+||. ..|..
T Consensus        67 ~~~~~~l~~~~~~~vi~dg~-~~~~~   91 (179)
T 3lw7_A           67 RLCVEELGTSNHDLVVFDGV-RSLAE   91 (179)
T ss_dssp             HHHHHHHCSCCCSCEEEECC-CCHHH
T ss_pred             HHHHHHHHhcCCCeEEEeCC-CCHHH
Confidence            4444556  67888999996 54443

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.54  E-value=2.6e-07  Score=84.65  Aligned_cols=41  Identities=17%  Similarity=0.434  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|+|+|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~   41 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKE   41 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc
Confidence            36899999999999999999999999998777888887654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.53  E-value=2.9e-07  Score=83.58  Aligned_cols=44  Identities=23%  Similarity=0.433  Sum_probs=38.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ..+|++|+|.|+|||||||+|+.|+.++|++++..+|.+++.+.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~   60 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIE   60 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHH
Confidence            45788999999999999999999999999998766677777544

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.53  E-value=4.8e-07  Score=81.89  Aligned_cols=43  Identities=21%  Similarity=0.243  Sum_probs=36.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      ..+|++|+|+|++||||||+|+.|++++|+.++..+|.+++.+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~   54 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQ   54 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHH
Confidence            4567899999999999999999999999998875566666653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.51  E-value=6.6e-07  Score=85.11  Aligned_cols=116  Identities=17%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC-CeEEcchhHHHHH
Q 011994          121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL-PNVLQTDMVYELL  199 (473)
Q Consensus       121 ~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~-~~Vi~tD~ir~~L  199 (473)
                      ..+.+++...+..++..            +........+|.+|+|+|+|||||||+|+.|+..++. .+++.+|.+|..+
T Consensus         5 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~   72 (253)
T 2p5t_B            5 DYTDSEFKHALARNLRS------------LTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQH   72 (253)
T ss_dssp             CCCHHHHHHHHHHHHHH------------HHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTS
T ss_pred             hcCHHHHHHHHHHHHHH------------HHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhc
Confidence            45666666555554332            1222224456899999999999999999999999974 3455788887642


Q ss_pred             hhCCCCCCCCCcccccccc-ChHHHHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcc
Q 011994          200 RTSTDAPLSSSPVWARNFS-SSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPS  262 (473)
Q Consensus       200 r~~~s~pL~~~~~W~~~y~-s~EelI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pe  262 (473)
                      ...        ......+. ...++...+.  .++    +...+..++..|..+||||++..+.
T Consensus        73 ~~~--------~~i~~~~g~~~~~~~~~~~--~~~----~~~~~~~~~~~g~~vVid~~~~~~~  122 (253)
T 2p5t_B           73 PHY--------LELQQEYGKDSVEYTKDFA--GKM----VESLVTKLSSLGYNLLIEGTLRTVD  122 (253)
T ss_dssp             TTH--------HHHHTTCSSTTHHHHHHHH--HHH----HHHHHHHHHHTTCCEEEECCTTSSH
T ss_pred             hhH--------HHHHHHcCchHHHHhhHHH--HHH----HHHHHHHHHhcCCCEEEeCCCCCHH
Confidence            110        00000000 0111211110  111    2344555677888999999877654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.50  E-value=2.3e-07  Score=89.15  Aligned_cols=88  Identities=20%  Similarity=0.229  Sum_probs=57.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +|.+|+|+|+|||||||+|+.|+.++ |+.+ +.+|.+|+.+....       ..|...|....   ..      .+...
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~-i~~D~~r~~~~~~~-------~g~~~~~~~~~---~~------~~~~~   63 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHE-------ERDEYKYTKKK---EG------IVTGM   63 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEE-ECHHHHHHHHTTSC-------CCC---CCHHH---HH------HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCCcEE-ecccHHHHHhccCC-------cccccccchhh---hh------HHHHH
Confidence            47899999999999999999999975 7776 48888888764311       12211111000   00      11122


Q ss_pred             HHHHHHHHH---hCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAM---KDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL---~eG~sVIIEGvhL~Pel  263 (473)
                      +...+..++   ..|..||+||.++.+..
T Consensus        64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~~   92 (301)
T 1ltq_A           64 QFDTAKSILYGGDSVKGVIISDTNLNPER   92 (301)
T ss_dssp             HHHHHHHHTTSCTTCCEEEECSCCCCHHH
T ss_pred             HHHHHHHHHhhccCCCEEEEeCCCCCHHH
Confidence            345566778   88999999999887643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.49  E-value=2e-07  Score=87.03  Aligned_cols=82  Identities=16%  Similarity=0.270  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH-HH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LA  239 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg-L~  239 (473)
                      ++|+|.|++||||||+|+.|+.++|+.++..+|.+|+.+.+..       +        ....+..+...+..+... +.
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~-------~--------~g~~i~~~~~~g~~~~~~~~~   65 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGT-------E--------LGKKAKEFIDRGDLVPDDITI   65 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTC-------H--------HHHHHHHHHTTTCCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCC-------H--------HHHHHHHHHHcCCcCcHHHHH
Confidence            4799999999999999999999999988766677777533210       0        012333333333332222 33


Q ss_pred             HHHHHHHhC--CCcEEEEcc
Q 011994          240 GDLKKAMKD--GKPIIIEGI  257 (473)
Q Consensus       240 ~~IekaL~e--G~sVIIEGv  257 (473)
                      ..+...+..  |..||+||.
T Consensus        66 ~~i~~~l~~~~g~~vIlDg~   85 (223)
T 2xb4_A           66 PMVLETLESKGKDGWLLDGF   85 (223)
T ss_dssp             HHHHHHHHHHCTTCEEEESC
T ss_pred             HHHHHHHhcccCCeEEEeCC
Confidence            445556666  899999984

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.49  E-value=1.9e-07  Score=83.09  Aligned_cols=42  Identities=26%  Similarity=0.398  Sum_probs=35.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ++++|+|.|++||||||+++.|++++|+.++..+|.+++.+.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~   44 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVA   44 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHH
Confidence            467899999999999999999999999988755567776543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.48  E-value=2.7e-07  Score=85.42  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +++.|+|.|+|||||||+|+.|+.++|++++..+|.+++.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~   46 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKN   46 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHc
Confidence            3468999999999999999999999999987666777776543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.47  E-value=3.3e-07  Score=85.06  Aligned_cols=42  Identities=17%  Similarity=0.358  Sum_probs=35.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      .+|++|+|.|++||||||+|+.|++++|+.++..+|.++...
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~   46 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNM   46 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhh
Confidence            356899999999999999999999999999876667777754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.42  E-value=3.9e-07  Score=82.78  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ++|++|+|+|++||||||+|+.|+..+|+.++ .+|.+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i-~~d~~   52 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI-EGDAL   52 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEE-EGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEE-eCCcC
Confidence            34779999999999999999999999999976 55554

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.42  E-value=2e-07  Score=82.52  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ  191 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~  191 (473)
                      +|++|+|+|++||||||+|+.|++++|++++..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d   36 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFE   36 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEc
Confidence            578999999999999999999999999998733

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.37  E-value=8.5e-07  Score=82.91  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      ..++.|+|.|++||||||+|+.|+.++|+.++..+|.+++.+..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~   57 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVAS   57 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHc
Confidence            45678999999999999999999999999987666777876543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.37  E-value=5.6e-07  Score=82.78  Aligned_cols=41  Identities=22%  Similarity=0.471  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~   41 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKS   41 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHc
Confidence            36899999999999999999999999988777888887654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.35  E-value=1.9e-06  Score=76.21  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir~~Lr  200 (473)
                      +++|+|.|+|||||||+++.|+.++|     +.++..+|.+|+.+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~   48 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK   48 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence            57899999999999999999999998     887755677777654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.31  E-value=1.9e-06  Score=76.59  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=33.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +.+|+|+|++||||||+|+.||+++|++++ .+|.+.+.+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i-~~d~~~~~~~   44 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY-DSDKEIEKRT   44 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEE-EHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEE-EChHHHHHHc
Confidence            458999999999999999999999999986 5666655433

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.30  E-value=1e-06  Score=84.30  Aligned_cols=40  Identities=33%  Similarity=0.465  Sum_probs=34.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh---cCCCeE-EcchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR---LNLPNV-LQTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~---Lg~~~V-i~tD~ir~~  198 (473)
                      ++++|+|+|+|||||||+|+.|+..   +|+.++ +..|.+++.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~   46 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES   46 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence            4679999999999999999999998   788876 467877754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.30  E-value=7.6e-07  Score=82.18  Aligned_cols=43  Identities=19%  Similarity=0.398  Sum_probs=35.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +|++|+|.|+|||||||+++.|++++|+.++..+|.++..+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~   46 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAA   46 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHc
Confidence            5678999999999999999999999999876555677775443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=3.2e-06  Score=77.01  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +..+|+|+|+|||||||+++.|+..+|+.++..++.++.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~   62 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE   62 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence            345899999999999999999999999998744444444

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.27  E-value=3.7e-06  Score=73.42  Aligned_cols=37  Identities=32%  Similarity=0.526  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ++|+|.|++||||||+|+.|++++|++++ .+|.+...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i-~~d~~~~~   37 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFY-DVDEEVQK   37 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEE-EHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEE-ECcHHHHH
Confidence            47999999999999999999999999976 55555443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.18  E-value=1.1e-06  Score=78.34  Aligned_cols=39  Identities=31%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      +++|+|+|+|||||||+|+.|++++|++++ ..|.+++.+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~i-d~D~~~~~~   40 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLL-DTDVAIEQR   40 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEE-eCchHHHHH
Confidence            457999999999999999999999999986 566555443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.18  E-value=5.8e-06  Score=73.33  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +|+|+|+|||||||+|+.||.++|++++ .+|.+.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~-d~d~~~~~   41 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFL-DSDFLIEQ   41 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEE-EHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEE-cccHHHHH
Confidence            6899999999999999999999999986 56655543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.17  E-value=1.4e-06  Score=89.36  Aligned_cols=67  Identities=22%  Similarity=0.372  Sum_probs=51.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL  238 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL  238 (473)
                      .|.+|+|+|+|||||||+|+.|+.++|+.+| ..|.++.               |                      ..+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i-~~D~~~~---------------~----------------------~~~  298 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV-NRDTLGS---------------W----------------------QRC  298 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC-CGGGSCS---------------H----------------------HHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE-ccchHHH---------------H----------------------HHH
Confidence            4789999999999999999999999998865 6665410               0                      112


Q ss_pred             HHHHHHHHhCCCcEEEEcccCCccc
Q 011994          239 AGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       239 ~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      ...+..++..|.+||+|++++.+..
T Consensus       299 ~~~~~~~l~~g~~vIiD~~~~~~~~  323 (416)
T 3zvl_A          299 VSSCQAALRQGKRVVIDNTNPDVPS  323 (416)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred             HHHHHHHHhcCCcEEEeCCCCCHHH
Confidence            3345567789999999998876543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.17  E-value=4.4e-06  Score=80.65  Aligned_cols=83  Identities=20%  Similarity=0.437  Sum_probs=59.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-  238 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-  238 (473)
                      .+.+-|.|+|||||||+|..|++++|++++..+|.+|+.+....       +        ....+..|...+..|...+ 
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t-------~--------lG~~i~~~~~~G~lvpdei~   72 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGT-------P--------LGVEAKTYMDEGKLVPDSLI   72 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTC-------H--------HHHHHHHHHTTTCCCCHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCC-------h--------HHHHHHHHHhhccccccHHH
Confidence            35789999999999999999999999999866788998765311       1        1235667776666665554 


Q ss_pred             HHHHHHHHhC---CCcEEEEcc
Q 011994          239 AGDLKKAMKD---GKPIIIEGI  257 (473)
Q Consensus       239 ~~~IekaL~e---G~sVIIEGv  257 (473)
                      ...+...|..   +..+|+||.
T Consensus        73 ~~ll~~~l~~~~~~~g~ILDGf   94 (230)
T 3gmt_A           73 IGLVKERLKEADCANGYLFDGF   94 (230)
T ss_dssp             HHHHHHHHHSGGGTTCEEEESC
T ss_pred             HHHHHHHHhCcccCCCeEecCC
Confidence            3445555543   456889884

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.16  E-value=2.5e-06  Score=75.27  Aligned_cols=39  Identities=23%  Similarity=0.272  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELL  199 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir~~L  199 (473)
                      ++|+|.|+|||||||+++.|+++++     +.++..+|.+++.+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            4799999999999999999999997     55553356666655

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.14  E-value=7.5e-06  Score=71.64  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .+|+|+|++||||||+|+.|+.++|++++ .+|.+...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i-d~d~~~~~   39 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFV-DTDIFMQH   39 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEE-EHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEE-cccHHHHH
Confidence            47999999999999999999999999876 55655543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.11  E-value=5.2e-06  Score=83.41  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccc--cHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDV--SQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I--~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |...|.++||.++++.+|..++++.+.+.++..-  ..+.+.+.+++.|.+. ++...  ...+........+|.+|+|.
T Consensus        59 ~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~--~~~~~~~~~~~~~g~vi~lv  135 (328)
T 3e70_C           59 LEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI-LETSR--RIDLIEEIRKAEKPYVIMFV  135 (328)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHH-SCCSS--CCCHHHHHHSSCSSEEEEEE
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHH-hCCcc--ccchhhhcccCCCCeEEEEE
Confidence            5567889999999999999999999987655321  1233444444443331 11110  01111112234578999999


Q ss_pred             cCCCCcHHHHHHHHHHhc
Q 011994          167 GTACVGKSTIATQLAQRL  184 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L  184 (473)
                      |++||||||+++.|+..+
T Consensus       136 G~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          136 GFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.10  E-value=1.6e-05  Score=72.42  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ..+.+|+|.|++||||||+++.|+..+|..++ .+|.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i-~~d~~   63 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA-EADAF   63 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE-EGGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE-ccccc
Confidence            45679999999999999999999999998876 45544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.07  E-value=2.1e-05  Score=69.45  Aligned_cols=36  Identities=22%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ...+|+|+|++||||||+++.|+..+|..++ .+|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i-~~d~~   42 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL-DGDFL   42 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE-EGGGG
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE-eCccc
Confidence            3568999999999999999999999998876 55554

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.06  E-value=5.1e-06  Score=88.16  Aligned_cols=95  Identities=18%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC---Ce-EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL---PN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI  233 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~---~~-Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~  233 (473)
                      ..|.+|+++|.|||||||+|+.|+++|++   .. +++.|.+++.+.+...  .  .    ..|....  -.+|.....+
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~--~--~----~~f~~~~--~~~~~~re~~  102 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYS--S--Y----NFFRPDN--EEAMKVRKQC  102 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCC--C--G----GGGCTTC--HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCc--c--c----cccCccc--HHHHHHHHHH
Confidence            45789999999999999999999999853   32 3567888877654311  0  0    1111000  0122111112


Q ss_pred             hHhHHHHHHHHHH--hCCCcEEEEcccCCccc
Q 011994          234 VRKGLAGDLKKAM--KDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       234 V~egL~~~IekaL--~eG~sVIIEGvhL~Pel  263 (473)
                      +...+ ..+...|  ..|..||+|+++.....
T Consensus       103 ~~~~l-~~~~~~L~~~~g~~VIvDat~~~~~~  133 (520)
T 2axn_A          103 ALAAL-RDVKSYLAKEGGQIAVFDATNTTRER  133 (520)
T ss_dssp             HHHHH-HHHHHHHHHSCCCEEEEESCCCSHHH
T ss_pred             HHHHH-HHHHHHHHhcCCceEEecCCCCCHHH
Confidence            22222 2334445  57888999998877654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.06  E-value=1.9e-05  Score=70.87  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCC--eEE----cchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLP--NVL----QTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~--~Vi----~tD~ir~~Lr  200 (473)
                      ++++|+|.|++||||||+|+.|+++++..  ++.    .++.+++.+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~   50 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK   50 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh
Confidence            46899999999999999999999999874  433    2456665544

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.02  E-value=4.5e-06  Score=73.43  Aligned_cols=35  Identities=31%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +|+|.|++||||||+|+.||++||++++. +|.+..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg~~~id-~D~~~~   43 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALKLEVLD-TDMIIS   43 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCCEEE-HHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE-ChHHHH
Confidence            89999999999999999999999999874 554443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.01  E-value=1.9e-05  Score=78.22  Aligned_cols=101  Identities=23%  Similarity=0.293  Sum_probs=67.5

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC  166 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~  166 (473)
                      =|.+.|.++||.+.+|.++..++++.+.+.++.  ..+++...+.+.|.+. ++..     .....+. ....+.+|+|.
T Consensus        35 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-l~~~-----~~~~~l~~~~~~g~vi~lv  106 (302)
T 3b9q_A           35 ELEEALLVSDFGPKITVRIVERLREDIMSGKLK--SGSEIKDALKESVLEM-LAKK-----NSKTELQLGFRKPAVIMIV  106 (302)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC--SHHHHHHHHHHHHHHH-HCC-------CCCSCCCCSSSCEEEEEE
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHH-hCCc-----ccccccccccCCCcEEEEE
Confidence            467889999999999999999999998876542  3345555555555442 1110     0000011 13457899999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVY  196 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir  196 (473)
                      |++||||||+++.||..+   +-. .+...|..+
T Consensus       107 G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A          107 GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            999999999999999876   333 333456543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.98  E-value=2.1e-05  Score=80.26  Aligned_cols=100  Identities=23%  Similarity=0.299  Sum_probs=67.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG  167 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~G  167 (473)
                      |...|.++||.+.++.++..++++.+.+.++.  ..+++...+.+.|.+. ++.. .   . ...+. ....|.+|+|.|
T Consensus        93 l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~-l~~~-~---~-~~~l~l~~~~g~vi~lvG  164 (359)
T 2og2_A           93 LEEALLVSDFGPKITVRIVERLREDIMSGKLK--SGSEIKDALKESVLEM-LAKK-N---S-KTELQLGFRKPAVIMIVG  164 (359)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC--SHHHHHHHHHHHHHHH-HCCC--------CSCCCCSSSSEEEEEEC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHH-hCCc-c---c-CCCcceecCCCeEEEEEc
Confidence            56789999999999999999999999877653  3345555555555441 1110 0   0 00011 234578999999


Q ss_pred             CCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 011994          168 TACVGKSTIATQLAQRL---NLP-NVLQTDMVY  196 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir  196 (473)
                      ++||||||+++.||..+   +-. .+...|..+
T Consensus       165 ~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          165 VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            99999999999999876   333 333556543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.97  E-value=2.4e-05  Score=76.05  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .+|++|.|+|++||||||+|+.|+ .+|+++| .+|.+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~i-d~D~~~  109 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYII-DSDHLG  109 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEE-EHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEE-ehhHHH
Confidence            457899999999999999999999 6899876 555553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.97  E-value=6.4e-06  Score=71.56  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=30.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      ++|+|.|++||||||+++.|++++|+.++ ..|.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i-~~d~~~~   37 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPII-KGSSFEL   37 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEE-ECCCHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeee-cCccccc
Confidence            37999999999999999999999999976 5555443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.95  E-value=6e-06  Score=72.46  Aligned_cols=38  Identities=39%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      ++.+|+|+|++||||||+++.|+..+|+.++ .+|.+..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~i-d~d~~~~   40 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY-DSDQEIE   40 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEE-EHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE-eccHHHH
Confidence            3568999999999999999999999998875 5555543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.94  E-value=5.9e-06  Score=73.46  Aligned_cols=40  Identities=33%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ++.+|+|+|+|||||||+++.|+.++|+.++..++.+++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~   49 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE   49 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence            4567899999999999999999999999987555555543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.92  E-value=1.8e-05  Score=79.12  Aligned_cols=102  Identities=14%  Similarity=0.219  Sum_probs=67.3

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC  166 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~  166 (473)
                      =|...|.++||.+.+|.++..++++.+.+.++..-.+..|.+.+.++|......       .+...+. ....|.+|+|+
T Consensus        39 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~l~~~~~~~~vI~iv  111 (320)
T 1zu4_A           39 ELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWT-------NKKYRIDFKENRLNIFMLV  111 (320)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC-----------CCCCCCTTSCEEEEEE
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCccccc-------ccccCccccCCCCeEEEEE
Confidence            477889999999999999999999988876554323344444454544321100       0000111 13457899999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLPNVL-QTDMVY  196 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir  196 (473)
                      |++|+||||++..||..+   |...++ ..|..+
T Consensus       112 G~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A          112 GVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            999999999999999876   444433 456543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.92  E-value=6.6e-06  Score=74.16  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh-cCCCeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR-LNLPNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~-Lg~~~Vi~tD~ir~  197 (473)
                      ++.+|+|+|++||||||+++.|+.+ +|++++..++.+++
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~   48 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE   48 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence            4568999999999999999999999 79998755556665

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.90  E-value=2.5e-05  Score=83.23  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=64.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc--cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEE
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLL--DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILV  165 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~--~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI  165 (473)
                      =|...|..+||.+.++.+|..+++..+.+.+..  ......|.+.+.++|...  ...    +.    | .-..+.+|+|
T Consensus       230 el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~----Is----l-~i~~GeVI~L  298 (503)
T 2yhs_A          230 ELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKV--DEP----LN----V-EGKAPFVILM  298 (503)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHHHHHHHHHTT--BCC----CC----C-CSCTTEEEEE
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCC--CCC----ce----e-eccCCeEEEE
Confidence            466779999999999999999999988875442  222233444444443321  000    00    1 2345789999


Q ss_pred             EcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994          166 CGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY  196 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir  196 (473)
                      +|++||||||+++.|+..+   +...++ ..|.++
T Consensus       299 VGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          299 VGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR  333 (503)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred             ECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence            9999999999999999876   334333 466654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.90  E-value=1.2e-05  Score=72.03  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .+|.+|.|+|++||||||+++.|+.. |+.++..++.+++.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~   45 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARA   45 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHh
Confidence            45789999999999999999999998 99987544444544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.89  E-value=9.6e-06  Score=74.21  Aligned_cols=39  Identities=23%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +.+|.|.|++||||||+++.|+..+|++++..++.+++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence            568999999999999999999999999987556666654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.86  E-value=3.4e-05  Score=80.98  Aligned_cols=100  Identities=15%  Similarity=0.279  Sum_probs=67.7

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCccc-cc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~-I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |.+.|.+++|.+.++..+..++++.+.+..+.. ++ .+.+...|.+-|.+. ++...       .......+|.+|+|+
T Consensus        35 i~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~-L~~~~-------~~~~~~~~p~vIliv  106 (443)
T 3dm5_A           35 IQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKF-LGTEA-------KPIEIKEKPTILLMV  106 (443)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH-TTSSC-------CCCCCCSSSEEEEEE
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-hcCcc-------cccccCCCCeEEEEE
Confidence            557889999999999999999999988776532 22 344555555444331 11100       001112358999999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLPNV-LQTDMVY  196 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir  196 (473)
                      |++|+||||++..||..+   |..++ +..|.+|
T Consensus       107 G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A          107 GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            999999999999999876   55543 3567654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.84  E-value=4.2e-05  Score=68.43  Aligned_cols=43  Identities=33%  Similarity=0.375  Sum_probs=33.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC---CCe-EEcchhHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN---LPN-VLQTDMVYELL  199 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~~-Vi~tD~ir~~L  199 (473)
                      ..++.+|+|.|++||||||+++.|+..++   ... ++..|.+++.+
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~   56 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV   56 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH
Confidence            34578999999999999999999999884   333 34677776543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.84  E-value=2.7e-05  Score=77.46  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG  167 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G  167 (473)
                      =|.+.|.++||.+.+|.++..++++     ..+. ....+.+.+.++|....  +     +.    + ...+|.+|+|+|
T Consensus        50 ~l~~~L~~~dv~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~l~~~~--~-----~~----~-~~~~~~vi~ivG  111 (306)
T 1vma_A           50 ELEELLIQADVGVETTEYILERLEE-----KDGD-ALESLKEIILEILNFDT--K-----LN----V-PPEPPFVIMVVG  111 (306)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHTT-----CCSC-HHHHHHHHHHHHTCSCC--C-----CC----C-CSSSCEEEEEEC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHh-----cCHH-HHHHHHHHHHHHhCCCC--C-----Cc----c-cCCCCeEEEEEc
Confidence            4678889999999999999998876     1122 33334444444332110  0     01    1 134678999999


Q ss_pred             CCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994          168 TACVGKSTIATQLAQRL---NLPNV-LQTDMVY  196 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir  196 (473)
                      ++|+||||++..||..+   |...+ +..|..|
T Consensus       112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            99999999999999876   44433 3556654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.83  E-value=1.7e-05  Score=80.00  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=32.5

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ...+|.+|+|+||+||||||+|..||++++... ++.|.+
T Consensus         6 ~~~~~~~i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~   44 (316)
T 3foz_A            6 KASLPKAIFLMGPTASGKTALAIELRKILPVEL-ISVDSA   44 (316)
T ss_dssp             -CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEE-EECCTT
T ss_pred             cCCCCcEEEEECCCccCHHHHHHHHHHhCCCcE-Eecccc
Confidence            345678999999999999999999999999775 476653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.83  E-value=1.7e-05  Score=71.29  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +|.|+|++||||||+++.|+.++|++++..++..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~   39 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRA   39 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHh
Confidence            899999999999999999999999998744444444

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.81  E-value=5.9e-05  Score=68.62  Aligned_cols=41  Identities=37%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL  198 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~  198 (473)
                      .++.+|+|.|++||||||+++.|+..+   |.. +++.+|.++..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~   67 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG   67 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH
Confidence            457899999999999999999999998   544 13466766643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.81  E-value=1.5e-05  Score=74.08  Aligned_cols=45  Identities=31%  Similarity=0.352  Sum_probs=34.9

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      ++....++|.|+|.+||||||+++.|++.+|++++..++.+++.+
T Consensus         7 ~~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~   51 (192)
T 2grj_A            7 HHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL   51 (192)
T ss_dssp             ---CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH
Confidence            334445799999999999999999999999999876556655554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.80  E-value=2.5e-05  Score=77.04  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             HHHHHHHcCCChHHHHHHHHHH-HHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994           89 LSRMLTVTKIPNHVAIKIALEL-KKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG  167 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~el-Kk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G  167 (473)
                      |...|..+||.+.++.++..++ ++.+...   .++.+.+...+.+.|.+. ++...    .    +.-..++.+|+|+|
T Consensus        45 l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-l~~~~----~----~~~~~~g~vi~lvG  112 (296)
T 2px0_A           45 AEKLLQETGIKESTKTNTLKKLLRFSVEAG---GLTEENVVGKLQEILCDM-LPSAD----K----WQEPIHSKYIVLFG  112 (296)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHHSSS---CCCTTTHHHHHHHHHHTT-SCCGG----G----SCCCCCSSEEEEEE
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHH-hCCcc----c----ccccCCCcEEEEEC
Confidence            5678999999999999999999 5555543   334456666776666552 22110    0    11123577999999


Q ss_pred             CCCCcHHHHHHHHHHhc----CCCeE-Ecchh
Q 011994          168 TACVGKSTIATQLAQRL----NLPNV-LQTDM  194 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L----g~~~V-i~tD~  194 (473)
                      ++|+||||++..||..+    |.... +..|.
T Consensus       113 ~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          113 STGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             STTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            99999999999999765    54433 34555

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.78  E-value=2.9e-05  Score=71.31  Aligned_cols=42  Identities=29%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCeE-EcchhHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN----LPNV-LQTDMVYEL  198 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg----~~~V-i~tD~ir~~  198 (473)
                      ..++.+|+|.|++||||||+++.|+..++    ++.+ +..|.++..
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~   68 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG   68 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhh
Confidence            45678999999999999999999999875    3332 355666543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.78  E-value=2e-05  Score=71.53  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      +++|.|.|++||||||+++.|+. +|++++ .+|.+.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~i-d~d~~~   36 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLV-DADVVA   36 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEE-EHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCccc-chHHHH
Confidence            46899999999999999999987 999986 455443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.77  E-value=1.6e-05  Score=75.30  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=28.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      ..+|++|.|+|++||||||+|+.|+..+|+++
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~   50 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNE   50 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence            34688999999999999999999999999873

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.76  E-value=5.4e-05  Score=70.28  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      .++|.|.|++||||||+|+.||++||+++|. .|.+++
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~   42 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDE   42 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHH
Confidence            3589999999999999999999999999874 666655

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.75  E-value=3.6e-05  Score=80.41  Aligned_cols=101  Identities=15%  Similarity=0.269  Sum_probs=66.7

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |.+.|.+++|.+.++..+..+++..+.+..+. .++ .+.+...|.+-|... .+...    .  ........|.+|+++
T Consensus        31 l~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~-L~~~~----~--~~~~~~~~~~vI~lv  103 (433)
T 3kl4_A           31 LQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKL-FGGDK----E--PNVNPTKLPFIIMLV  103 (433)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHH-HCSSS----C--CCCSCCSSSEEEEEC
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHh-cCccc----c--ccccccCCCeEEEEE
Confidence            46778889999999999999999999877653 232 344444444443321 01000    0  001122358899999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLPNV-LQTDMVY  196 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir  196 (473)
                      |++|+||||++..||..+   |..+. +..|..|
T Consensus       104 G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A          104 GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            999999999999999777   55543 3556554

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.75  E-value=2.2e-05  Score=71.96  Aligned_cols=37  Identities=24%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +|++|.|.|++||||||+++.|+. +|++++ .+|.+..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i-d~D~~~~   39 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVI-DADIIAR   39 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEE-EHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEE-EccHHHH
Confidence            578999999999999999999998 999876 5554443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.75  E-value=0.00037  Score=65.83  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN--LPNV  189 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~V  189 (473)
                      ..++.+|+|.|++||||||++..|+..++  +..+
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~   57 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI   57 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence            44678999999999999999999999986  4544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.73  E-value=6.5e-05  Score=78.20  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc------cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL------DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV  162 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~------~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~i  162 (473)
                      |.+.|.++||.+.++..+..++++.+.+.++.      ......+.+.+..+|....  ..    +.     .....|.+
T Consensus        34 ~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~----~~-----~~~~~~~v  102 (433)
T 2xxa_A           34 VRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN--QT----LN-----LAAQPPAV  102 (433)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCSSS--CC----CC-----CCSSSSEE
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhcccc--cc----cc-----ccCCCCeE
Confidence            66789999999999999999999999887653      2333445555555543210  00    00     02346889


Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc----CCCeEE-cchh
Q 011994          163 ILVCGTACVGKSTIATQLAQRL----NLPNVL-QTDM  194 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~L----g~~~Vi-~tD~  194 (473)
                      |+|+|.+|+||||++..||..+    |.++.+ ..|.
T Consensus       103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A          103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            9999999999999999999766    555443 3454

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.72  E-value=2.4e-05  Score=73.45  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +|.+|+|.|+|||||||+++.|++++|+..+..++.++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~   65 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN   65 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence            4789999999999999999999999999887666776654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.71  E-value=3.7e-05  Score=77.82  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i--r~~L  199 (473)
                      ++.+|+|+||+||||||+|..||.+++... ++.|.+  +..|
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~QvYr~~   43 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEV-ISGDSMQVYRGM   43 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEE-EECCGGGGBTTC
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccce-eecCcccceeee
Confidence            356899999999999999999999999765 577765  4444

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.69  E-value=2.3e-05  Score=71.57  Aligned_cols=38  Identities=34%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      |++|.|+|++||||||+++.|+..+|++++..++.++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~   40 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA   40 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence            67899999999999999999999999998755555554

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.67  E-value=2.9e-05  Score=74.81  Aligned_cols=39  Identities=31%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      +|++|.|.|++||||||+++.|+.++|+.++..++.++.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~   46 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRI   46 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHH
Confidence            578999999999999999999999999998644444443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.67  E-value=8.7e-05  Score=66.36  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      .+|+|+|+|||||||+++.|+..++...++..|.++.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence            4789999999999999999998887644557776654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.67  E-value=2.6e-05  Score=79.25  Aligned_cols=36  Identities=22%  Similarity=0.509  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ++.+|+|+|++||||||+|..||..++... ++.|.+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~~~i-is~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFNGEI-ISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTEEE-EECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcCCce-eccccc
Confidence            456899999999999999999999999764 577765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.67  E-value=3e-05  Score=78.91  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      +++.+|+|+|++||||||||..||+++|..+ ++.|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~ei-Is~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEV-INSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEE-EECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcE-Eccccc
Confidence            4567999999999999999999999999875 477765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.64  E-value=5.5e-05  Score=75.04  Aligned_cols=87  Identities=18%  Similarity=0.136  Sum_probs=55.1

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhc------cCCCe
Q 011994           88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHH------QRVPL  161 (473)
Q Consensus        88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~------~~~P~  161 (473)
                      =|.+.|..+||.+.+|.++..++++.+.         +++...+.+.|.+. ++.....+......+..      ...|.
T Consensus        34 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~  103 (304)
T 1rj9_A           34 ELEMALLAADVGLSATEEILQEVRASGR---------KDLKEAVKEKLVGM-LEPDERRATLRKLGFNPQKPKPVEPKGR  103 (304)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTCC---------SSTTHHHHHHHTTT-TCTTCHHHHHHHTTCCCCCCCCCCCSSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH-hCcccccccccccccccccccccCCCCe
Confidence            4778899999999999999999987654         22333334444331 22110000000001101      12577


Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|.|.|++||||||++..|+..+
T Consensus       104 vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999776

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.64  E-value=0.00011  Score=72.61  Aligned_cols=98  Identities=17%  Similarity=0.276  Sum_probs=66.5

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHH-hhccCCCeEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTR-FHHQRVPLVILV  165 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~-~~~~~~P~iIlI  165 (473)
                      |.+.|.++||.+.+|.++..++++.+.+.++. .++. +.+...+.+-|... |+...       .. +.-..+|.+|++
T Consensus        32 ~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-------~~~i~~~~~~~vi~i  103 (297)
T 1j8m_F           32 LQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL-FGGDK-------EPKVIPDKIPYVIML  103 (297)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH-TTCSC-------CCCCSCSSSSEEEEE
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH-hcccc-------ccccccCCCCeEEEE
Confidence            66789999999999999999999999887763 3333 44555555555432 32210       00 111123789999


Q ss_pred             EcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994          166 CGTACVGKSTIATQLAQRL---NLPNVL-QTDM  194 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~  194 (473)
                      .|++|+||||++..||..+   |...++ ..|.
T Consensus       104 ~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F          104 VGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             ECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            9999999999999999776   554433 4453

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.64  E-value=8.6e-05  Score=74.94  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      +|.+|+|+|++||||||+|..||.++|..++ +.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~ii-s~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELI-SVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEE-EECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEE-eccch
Confidence            4678999999999999999999999998765 55544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.61  E-value=2.9e-05  Score=70.13  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      ++|.|+|++||||||+++.|+. +|++++..++.+++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~   37 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHS   37 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHG
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHH
Confidence            3799999999999999999999 99987644444443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.61  E-value=0.00012  Score=76.16  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC  166 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~  166 (473)
                      |.+.|.++||.+.++.++..++++.+.+..+. .++ .+.+...+.+-|... |+...       ..+.-. .|.+|+|+
T Consensus        34 ~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-~~~~~-------~~i~l~-~~~vi~i~  104 (425)
T 2ffh_A           34 IRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA-LGGEA-------RLPVLK-DRNLWFLV  104 (425)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHH-TTSSC-------CCCCCC-SSEEEEEE
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHH-hCCCc-------ccccCC-CCeEEEEE
Confidence            45789999999999999999999999887763 223 245666666555442 33210       011112 57899999


Q ss_pred             cCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994          167 GTACVGKSTIATQLAQRL---NLPNV-LQTDMVY  196 (473)
Q Consensus       167 G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir  196 (473)
                      |++|+||||++..||..+   |.... +..|..+
T Consensus       105 G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A          105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            999999999999999877   44433 3445443

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.61  E-value=3.5e-05  Score=80.27  Aligned_cols=39  Identities=41%  Similarity=0.592  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELL  199 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~L  199 (473)
                      +.+|+|+||+||||||+|..||.+++... ++.|.  ++..|
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~i-is~Ds~QvYr~l   42 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEV-INSDSMQVYKDI   42 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEE-EECCTTTTBSSC
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeE-eecCccceeccc
Confidence            45899999999999999999999999764 57776  45444

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.61  E-value=4.4e-05  Score=72.99  Aligned_cols=34  Identities=41%  Similarity=0.654  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      .+|+|+|++||||||+|..||.++|+.++ ..|.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i-~~D~~   35 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV-ALDRV   35 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEE-ECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEE-eccHH
Confidence            37999999999999999999999999976 55554

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.58  E-value=0.0001  Score=71.22  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .+|+|.|++||||||+++.|+..+|+.++..++.++..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~   86 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA   86 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence            47999999999999999999999999987544444443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.57  E-value=4.5e-05  Score=68.42  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi  190 (473)
                      ++++|+|.|++||||||+++.|++++ |++++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~   35 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY   35 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence            57899999999999999999999999 577653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.55  E-value=5.8e-05  Score=70.54  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=34.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      ..++.+|.|+|++||||||+++.|+..||++++..++.++.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~   53 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA   53 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence            34567999999999999999999999999998755555554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.53  E-value=0.00012  Score=76.02  Aligned_cols=93  Identities=16%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe----EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN----VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI  233 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~----Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~  233 (473)
                      .+|.+|+++|.|||||||+++.|+..++...    ++..|.++..+.+...    ....|...    .+  ..|.....+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~----~~~ifd~~----g~--~~~r~re~~  106 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYK----SFEFFLPD----NE--EGLKIRKQC  106 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCC----CGGGGCTT----CH--HHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCC----cccccCCC----CH--HHHHHHHHH
Confidence            4678999999999999999999999886332    2345557666544210    11223221    11  112222223


Q ss_pred             hHhHHHHHHHHHH--hCCCcEEEEcccCCc
Q 011994          234 VRKGLAGDLKKAM--KDGKPIIIEGIHLDP  261 (473)
Q Consensus       234 V~egL~~~IekaL--~eG~sVIIEGvhL~P  261 (473)
                      +...+. .+..++  ..|..+|+|+++...
T Consensus       107 ~~~~l~-~~~~~l~~~~G~~vV~D~tn~~~  135 (469)
T 1bif_A          107 ALAALN-DVRKFLSEEGGHVAVFDATNTTR  135 (469)
T ss_dssp             HHHHHH-HHHHHHHTTCCSEEEEESCCCSH
T ss_pred             HHHHHH-HHHHHHHhCCCCEEEEeCCCCCH
Confidence            333332 234455  466788899886644

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.53  E-value=5.9e-05  Score=66.67  Aligned_cols=30  Identities=30%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      ++|+|+|++||||||+++.|++++   |++++.
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~   33 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL   33 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            479999999999999999999998   898763

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=97.52  E-value=0.00015  Score=77.58  Aligned_cols=83  Identities=23%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC---C-eEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL---P-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI  233 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~---~-~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~  233 (473)
                      ..+.+|+|+|.+||||||+|+.|+.+|+.   . .++..|.+++.+.+.        ..|..     .+...       +
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~--------~~f~~-----~er~~-------~  429 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRG--------LGFSK-----EDRIT-------N  429 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTT--------CCSSH-----HHHHH-------H
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccc--------ccccH-----HHHHH-------H
Confidence            45789999999999999999999998863   3 345788888765321        01110     11111       1


Q ss_pred             hHhHHHHHHHHHHhCCCcEEEEcccCCc
Q 011994          234 VRKGLAGDLKKAMKDGKPIIIEGIHLDP  261 (473)
Q Consensus       234 V~egL~~~IekaL~eG~sVIIEGvhL~P  261 (473)
                       +..+...+...+..|..||++++.+.+
T Consensus       430 -l~~i~~~~~~~l~~G~~VI~d~~~~~~  456 (546)
T 2gks_A          430 -ILRVGFVASEIVKHNGVVICALVSPYR  456 (546)
T ss_dssp             -HHHHHHHHHHHHHTTCEEEEECCCCCH
T ss_pred             -HHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence             122333455567889999999776654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.52  E-value=7.3e-05  Score=71.17  Aligned_cols=38  Identities=29%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      ..+|.|.|++||||||+++.|+++||+.++..++.+|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            46899999999999999999999999998755555544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.48  E-value=4.9e-05  Score=69.13  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVY  196 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir  196 (473)
                      .++.+|.|+|++||||||+++.|+..+ ++.++..+|.++
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~   58 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK   58 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence            346799999999999999999999988 788765555444

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.47  E-value=3.3e-05  Score=69.73  Aligned_cols=31  Identities=29%  Similarity=0.249  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      .+|++|+|+|++||||||+++.|+++++..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~   38 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN   38 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999999987543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.46  E-value=6.8e-05  Score=66.77  Aligned_cols=29  Identities=31%  Similarity=0.515  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ++|+|.|++||||||+++.|++++|..++
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            37899999999999999999999998654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.42  E-value=4.2e-05  Score=68.97  Aligned_cols=28  Identities=32%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+|++|+|.|++||||||+++.|+++++
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.41  E-value=0.00014  Score=64.75  Aligned_cols=41  Identities=32%  Similarity=0.440  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYEL  198 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~~  198 (473)
                      ..+.+|+|.|+|||||||+++.|+..++...| +.+|.++..
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~   48 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY   48 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence            44679999999999999999999988766533 456666553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.39  E-value=0.00028  Score=73.45  Aligned_cols=99  Identities=20%  Similarity=0.366  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccHHH-HHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQSD-LEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV  165 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~~e-Le~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI  165 (473)
                      +...|.+++|.+.++.++..++++...+.++. .++... +...+.+.|.+. ++...       ..+. ....|.+|+|
T Consensus        33 ~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~~-------~~~~~~~~~~~vI~i  104 (432)
T 2v3c_C           33 IQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKL-LGEEA-------KKLELNPKKQNVILL  104 (432)
T ss_dssp             HHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHH-HCCSC-------CCCCCCSSSCCCEEE
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHH-hCCCC-------cCccccCCCCeEEEE
Confidence            44678899999999999999999988776443 344333 444444433321 00000       0011 2245789999


Q ss_pred             EcCCCCcHHHHHHHHHHhc---CCCeE-EcchhH
Q 011994          166 CGTACVGKSTIATQLAQRL---NLPNV-LQTDMV  195 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~i  195 (473)
                      +|++|+||||++..||..+   |...+ +..|..
T Consensus       105 vG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C          105 VGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             ECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            9999999999999999877   34433 345543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.37  E-value=0.00057  Score=73.49  Aligned_cols=42  Identities=31%  Similarity=0.322  Sum_probs=34.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYELL  199 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg----~~~-Vi~tD~ir~~L  199 (473)
                      .+|++|+|+|++||||||+|+.|+++|+    .++ ++.+|.+|..+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l  440 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL  440 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence            3578999999999999999999999986    553 44678888764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.36  E-value=0.00032  Score=64.51  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++.+|+|+|++||||||+++.|+..+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3467999999999999999999998875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.34  E-value=0.00028  Score=77.04  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc-chhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ-TDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~-tD~ir~~  198 (473)
                      +|++|+|+|.+||||||+|+.|+++|   |++++.. .|.+|..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~   94 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG   94 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhc
Confidence            68899999999999999999999999   9887643 4666543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.32  E-value=0.00021  Score=63.46  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVYE  197 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~  197 (473)
                      ++.+|+|.|++||||||+++.|+..+   |++++. ..|.++.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~   46 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ   46 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence            46789999999999999999999988   988763 3455544

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.32  E-value=0.00035  Score=74.27  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=61.8

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 011994           89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV  165 (473)
Q Consensus        89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI  165 (473)
                      |.+.|.++||.+.++.++..+++..+.+..+. .++. +.+...+.+.|.+. ++..     .  ..+. ....|.+|+|
T Consensus        35 l~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l-l~~~-----~--~~~~~~~~~~~vI~i  106 (504)
T 2j37_W           35 VCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL-VDPG-----V--KAWTPTKGKQNVIMF  106 (504)
T ss_dssp             HHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHH-HCCC-----C--CCCCCCSS--EEEEE
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHH-hccc-----c--chhccccCCCeEEEE
Confidence            44788889999999999999999888876652 2222 23444444433321 0000     0  0011 1246789999


Q ss_pred             EcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994          166 CGTACVGKSTIATQLAQRL---NLPNVL-QTDM  194 (473)
Q Consensus       166 ~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~  194 (473)
                      +|++|+||||++..||..+   |....+ ..|.
T Consensus       107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            9999999999999999776   555443 4454

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.32  E-value=0.00013  Score=71.14  Aligned_cols=34  Identities=21%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|..++|.|+||+|||++|+.||..+|.+++.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~   66 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM   66 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4568899999999999999999999999988763

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.28  E-value=0.00014  Score=66.34  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=26.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +..++.+|+|+|+|||||||+++.|+..++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            455678999999999999999999999885

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.27  E-value=0.0015  Score=61.43  Aligned_cols=84  Identities=26%  Similarity=0.360  Sum_probs=49.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF  227 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf  227 (473)
                      +.++|+|.|++||||||++..|++.|   |+.++..        +..+++.+......      .|.     +.....-|
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~------~~~-----~~~~~llf   73 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDE------PMA-----ADTELLLM   73 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSS------CCC-----HHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCC------CCC-----HHHHHHHH
Confidence            46799999999999999999999988   4665431        12344444321100      011     11111112


Q ss_pred             HhcchhhHhHHHHHHHHHHhCCCcEEEEc
Q 011994          228 VRECRIVRKGLAGDLKKAMKDGKPIIIEG  256 (473)
Q Consensus       228 ~~q~~~V~egL~~~IekaL~eG~sVIIEG  256 (473)
                      ... +  .+-+...|..++..|..||.|-
T Consensus        74 ~a~-R--~~~~~~~i~p~l~~g~~Vi~DR   99 (213)
T 4edh_A           74 FAA-R--AQHLAGVIRPALARGAVVLCDR   99 (213)
T ss_dssp             HHH-H--HHHHHHTHHHHHHTTCEEEEES
T ss_pred             HHH-H--HHHHHHHHHHHHHCCCEEEECc
Confidence            110 0  1124456778899999999886

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.25  E-value=0.00021  Score=67.93  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      .++|.|.|++||||||+|+.||++||+++| ..|.+++....
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~-d~~~~~~~a~~   54 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFY-DDDILKLASEK   54 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEE-CHHHHHHHHHC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEE-cHHHHHHHHHH
Confidence            579999999999999999999999999987 48888875543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.21  E-value=0.001  Score=65.40  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994           90 SRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG  167 (473)
Q Consensus        90 sR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G  167 (473)
                      ...|..+++.++.+..++.+++....+..+. ..+. +++...+.+-+.. .|+...       ..+.-. .+.+|.|+|
T Consensus        35 ~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-------~~i~~~-~~~~i~i~g  105 (295)
T 1ls1_A           35 RRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKE-ALGGEA-------RLPVLK-DRNLWFLVG  105 (295)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHH-HTTSSC-------CCCCCC-SSEEEEEEC
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHH-HHCCCC-------ceeecC-CCeEEEEEC
Confidence            4778999999999999999999887776553 2333 4555544444433 122110       001112 567899999


Q ss_pred             CCCCcHHHHHHHHHHhc
Q 011994          168 TACVGKSTIATQLAQRL  184 (473)
Q Consensus       168 ~~GsGKSTlA~~LA~~L  184 (473)
                      ++|+||||++..||..+
T Consensus       106 ~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A          106 LQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CTTTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999999766

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.12  E-value=0.00017  Score=65.37  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeEEcc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN--LPNVLQT  192 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~Vi~t  192 (473)
                      ..+.+|.|.|++||||||+++.|+..++  +.++..+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d   40 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMD   40 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence            3567999999999999999999999888  7765433

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.12  E-value=0.00046  Score=65.30  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..++|.|+||+||||+|+.||..++.+++
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~   80 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI   80 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            45678999999999999999999999998765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.11  E-value=0.0013  Score=58.66  Aligned_cols=77  Identities=19%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL  238 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL  238 (473)
                      .+-++.|+|+|||||||+++.+.  .|.. ++..|.++..+.....     ...           +.+      .+...+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~-~~~~d~~~g~~~~~~~-----~~~-----------~~~------~~~~~~   62 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTE-VISSDFCRGLMSDDEN-----DQT-----------VTG------AAFDVL   62 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGG-EEEHHHHHHHHCSSTT-----CGG-----------GHH------HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCe-EEccHHHHHHhcCccc-----chh-----------hHH------HHHHHH
Confidence            35689999999999999999854  3444 4578888765443211     000           000      111223


Q ss_pred             HHHHHHHHhCCCcEEEEcccCC
Q 011994          239 AGDLKKAMKDGKPIIIEGIHLD  260 (473)
Q Consensus       239 ~~~IekaL~eG~sVIIEGvhL~  260 (473)
                      .......+..|...+++..+..
T Consensus        63 ~~~~~~~~~~g~~~~~~~~~~~   84 (171)
T 4gp7_A           63 HYIVSKRLQLGKLTVVDATNVQ   84 (171)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCS
T ss_pred             HHHHHHHHhCCCeEEEECCCCC
Confidence            3344456678889999887665

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00052  Score=71.63  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ...|.=||+.||||||||++|+.+|..+|.+++.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            3567789999999999999999999999988763

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.07  E-value=0.00095  Score=63.15  Aligned_cols=32  Identities=41%  Similarity=0.543  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..++|.|+||+|||++|+.|+..++.+++
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            45667899999999999999999999988765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.05  E-value=0.00045  Score=64.10  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..|+|.|+||+|||++|+.|+..++.+++
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            45678999999999999999999999998865

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.04  E-value=0.0027  Score=60.97  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLP  187 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~  187 (473)
                      ++.+|+|.|++||||||++..|+..|   |++
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~   57 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID   57 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999988   555

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.00052  Score=71.78  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.=||+.||||||||++|+.+|..+|.+++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            4567899999999999999999999999988764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.01  E-value=0.0021  Score=61.30  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.++|+|.|++||||||++..|++.|
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999988

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.00  E-value=0.00012  Score=71.78  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVY  196 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir  196 (473)
                      ++.+|.|+|++||||||+|+.|+..+|     +.+ +.+|.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~v-I~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS-IEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEE-EEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeE-eecchhh
Confidence            467899999999999999999999887     454 4555443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.00076  Score=70.59  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.=||++||||||||++|+.||..+|.+++.
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            4567899999999999999999999999998764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.93  E-value=0.00097  Score=64.80  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|..|+|.|+||+||||+|+.||..++.+++.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~   79 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS   79 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence            456789999999999999999999999977653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.92  E-value=0.0021  Score=61.28  Aligned_cols=30  Identities=27%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..++++|+|.|++||||||++..|++.|+.
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346889999999999999999999998643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.92  E-value=0.0012  Score=62.61  Aligned_cols=33  Identities=24%  Similarity=0.470  Sum_probs=29.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ...|..++|.|+||+|||++|+.++..++.+++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~   93 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI   93 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            345678999999999999999999999998865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.92  E-value=0.00055  Score=61.25  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.+|.|+|++||||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999999876

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.00073  Score=70.24  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.=||+.||||||||++|+.+|..+|.+++.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            3457789999999999999999999999988764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.89  E-value=0.00093  Score=70.11  Aligned_cols=32  Identities=41%  Similarity=0.542  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|..|+|.|+||+||||+|+.||..++.+++.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~   80 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence            46789999999999999999999999998764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.89  E-value=0.0046  Score=58.22  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CC-CeEE----c----chhHHHHHhhCCCCCCCCCccccccccChHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NL-PNVL----Q----TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF  227 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~-~~Vi----~----tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf  227 (473)
                      ..+|+|.|++||||||++..|+..|   |+ ..+.    .    ...+|+.+.......   .    .......+.+.-+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~---~----~~~~~~~e~lL~~   75 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG---D----EVITDKAEVLMFY   75 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTT---T----CCCCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccc---c----ccCChHHHHHHHH
Confidence            4689999999999999999999988   55 3332    1    133455544211000   0    0011111122222


Q ss_pred             HhcchhhHhHHHHHHHHHHhCCCcEEEEcc
Q 011994          228 VRECRIVRKGLAGDLKKAMKDGKPIIIEGI  257 (473)
Q Consensus       228 ~~q~~~V~egL~~~IekaL~eG~sVIIEGv  257 (473)
                      ....    +-+...|..++.+|..||.|-.
T Consensus        76 A~R~----~~~~~~i~paL~~g~~VI~DRy  101 (213)
T 4tmk_A           76 AARV----QLVETVIKPALANGTWVIGDRH  101 (213)
T ss_dssp             HHHH----HHHHHTHHHHHHTTCEEEEECC
T ss_pred             HHHH----HHHHHHHHHHHHCCCEEEEcCc
Confidence            2211    2345567889999999998863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.89  E-value=0.00075  Score=63.26  Aligned_cols=31  Identities=26%  Similarity=0.482  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .|.-|+|.|+||+||||+|+.|+..++.+++
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~   74 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF   74 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence            4567999999999999999999999988765

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.00077  Score=71.31  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.=||+.||||||||++|+.||..+|.+++.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            3568899999999999999999999999988764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.87  E-value=0.0019  Score=64.00  Aligned_cols=32  Identities=31%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+..|+|.|+||+|||++|+.||..++.+++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~   81 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTM   81 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            45678999999999999999999999998763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0011  Score=69.49  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.=||+.||||||||++|+.+|..++.+++.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            4557889999999999999999999999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.82  E-value=0.00078  Score=64.22  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+..|+|.|+||+||||+|+.|+..++.+++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            4678999999999999999999999987764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.81  E-value=0.0014  Score=56.35  Aligned_cols=27  Identities=37%  Similarity=0.476  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.+..++|.|++|+||||+++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999999987

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.78  E-value=0.00091  Score=61.22  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..+.+|.|.|++||||||+++.|+..+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999998875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.77  E-value=0.0012  Score=59.59  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+..++|.|++|+||||+|+.++..++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998774

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.74  E-value=0.0013  Score=58.32  Aligned_cols=30  Identities=43%  Similarity=0.533  Sum_probs=25.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .+.|..++|.|++|+||||+++.++..++.
T Consensus        42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            344568999999999999999999988854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.73  E-value=0.0014  Score=56.62  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+..++|.|++|+||||+|+.++..+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345578999999999999999999987

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.73  E-value=0.0023  Score=61.07  Aligned_cols=29  Identities=28%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+.+..|+|.|+||+|||++|+.+|..++
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34456799999999999999999998883

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.70  E-value=0.0097  Score=54.94  Aligned_cols=81  Identities=21%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc----c----hhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNVLQ----T----DMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVR  229 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~----t----D~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~  229 (473)
                      +.|.|-|.-||||||.+..|++.|   |++++..    +    ..+++.+....              .++.....-|..
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~--------------~~~~~~~ll~~a   66 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEE--------------VTPKAELFLFLA   66 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSC--------------CCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhccc--------------CChHHHHHHHHH
Confidence            468899999999999999999988   6776541    1    23333322211              011111112221


Q ss_pred             cchhhHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994          230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHL  259 (473)
Q Consensus       230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL  259 (473)
                      . +   ..+...+..++.+|..||.|-...
T Consensus        67 ~-r---~~~~~~I~~~L~~g~~Vi~DRy~~   92 (197)
T 3hjn_A           67 S-R---NLLVTEIKQYLSEGYAVLLDRYTD   92 (197)
T ss_dssp             H-H---HHHHHHHHHHHTTTCEEEEESCHH
T ss_pred             H-H---HHHHHHHHHHHHCCCeEEecccch
Confidence            1 1   123345778999999999887443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.67  E-value=0.0011  Score=64.98  Aligned_cols=32  Identities=28%  Similarity=0.236  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|.-|||.|+||+|||++|+.+|..++.+++.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~   81 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS   81 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence            35689999999999999999999999987653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.65  E-value=0.0013  Score=61.88  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.+|.|.|++||||||+++.|+..+|..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            456799999999999999999999988854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.65  E-value=0.0012  Score=61.54  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +|++|+|.|.+||||||+++.|+++++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999999994

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.64  E-value=0.0014  Score=69.89  Aligned_cols=29  Identities=10%  Similarity=0.190  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +.+++|+|+|.+||||||+|+.||++|+.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999999986

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.64  E-value=0.0015  Score=65.61  Aligned_cols=29  Identities=38%  Similarity=0.590  Sum_probs=26.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+.|.+|.|.|++||||||+++.|+..++
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999999998775

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.61  E-value=0.00062  Score=64.54  Aligned_cols=31  Identities=26%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc-CCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL-NLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~  188 (473)
                      .++++|+|.|++||||||+++.|++.| ++.+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~   53 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV   53 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            467899999999999999999999999 5443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.61  E-value=0.0031  Score=60.99  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      |.-++|.|+|||||||+++.||..++...+
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            344999999999999999999999987654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.60  E-value=0.0018  Score=59.10  Aligned_cols=40  Identities=30%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY  196 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir  196 (473)
                      ...+.+|.|+|++||||||++..|+..+   |...++ ..|.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            3457899999999999999999999876   555433 445543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.58  E-value=0.0015  Score=58.49  Aligned_cols=26  Identities=15%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..+|.|.|++||||||+++.|+..+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.57  E-value=0.00056  Score=61.66  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ++|+|.|++||||||++..|+..++
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999885

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.57  E-value=0.011  Score=55.01  Aligned_cols=82  Identities=18%  Similarity=0.297  Sum_probs=48.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL--NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRE  230 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L--g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q  230 (473)
                      .-|.|-|..||||||++..|+++|  |+.++..        .+.+|+.+....  ++      .     +.....-|...
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~--~~------~-----~~~~~lLf~a~   69 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN--DM------D-----IRTEAMLFAAS   69 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSC--CC------C-----HHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhccc--CC------C-----HHHHHHHHHHH
Confidence            468899999999999999999998  5665531        234454443211  11      0     01111112110


Q ss_pred             chhhHhHHHHHHHHHHhCCCcEEEEccc
Q 011994          231 CRIVRKGLAGDLKKAMKDGKPIIIEGIH  258 (473)
Q Consensus       231 ~~~V~egL~~~IekaL~eG~sVIIEGvh  258 (473)
                       +  .+-+...+..++..|..||.|...
T Consensus        70 -R--~~~~~~~i~p~l~~g~~Vi~DRy~   94 (205)
T 4hlc_A           70 -R--REHLVLKVIPALKEGKVVLCDRYI   94 (205)
T ss_dssp             -H--HHHHHHTHHHHHHTTCEEEEECCH
T ss_pred             -H--HHHHHHHHHHHHHcCCEEEecCcc
Confidence             1  112445677889999999988643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.56  E-value=0.0016  Score=63.03  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=29.1

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+.|.+++++|+||+|||++|+.|+..++..++
T Consensus        44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~   77 (324)
T 3u61_B           44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM   77 (324)
T ss_dssp             TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence            3455778999999999999999999999986654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.54  E-value=0.0014  Score=64.37  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=26.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ...+|.+|.|+|++||||||+++.|+..++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            346789999999999999999999998875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.54  E-value=0.0016  Score=58.41  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..+|+|+|++||||||+++.|+..+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35899999999999999999998763

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.54  E-value=0.0053  Score=58.17  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +.++|+|.|++||||||++..|++.|+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~   32 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPN   32 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            46799999999999999999999999864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.53  E-value=0.0017  Score=64.67  Aligned_cols=32  Identities=31%  Similarity=0.493  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+..|+|.|+||+|||++|+.||..++.+++.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~  102 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI  102 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            34578999999999999999999999988763

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0029  Score=61.78  Aligned_cols=29  Identities=17%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ....|..++|.|++|+||||+++.++..+
T Consensus        41 ~~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           41 KNEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             TTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34567799999999999999999999987

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.49  E-value=0.0018  Score=62.80  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..+..|+|.|++|+|||++|+.++..++.+++.
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~   85 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKT   85 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            345578999999999999999999999988653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.49  E-value=0.00065  Score=63.82  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .|.-|+|.|+||+|||++|+.|+..++.+++
T Consensus        43 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~   73 (268)
T 2r62_A           43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF   73 (268)
T ss_dssp             CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            3455899999999999999999999987754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.48  E-value=0.0018  Score=64.58  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..|+|.|+||+|||++|+.||..++.+++
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~  146 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFF  146 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            45678999999999999999999999998765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.48  E-value=0.0018  Score=63.94  Aligned_cols=31  Identities=29%  Similarity=0.207  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~V  189 (473)
                      .|.-|+|.|+||+|||++|+.+|..+ +.+++
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            45789999999999999999999998 55543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.46  E-value=0.0017  Score=61.89  Aligned_cols=35  Identities=37%  Similarity=0.464  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      ...|+|+|++|+||||+|..|+++.+  .++++|.+.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~~   68 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH--RLIADDRVD   68 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchhh
Confidence            46799999999999999999998876  566777543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.45  E-value=0.0027  Score=55.86  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|.|++|+|||+++..++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999876

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.43  E-value=0.0021  Score=61.07  Aligned_cols=38  Identities=21%  Similarity=0.149  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      ..|-++|..||||||+++.|+. +|++++.++...++.+
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~   47 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRIT   47 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHh
Confidence            4789999999999999999987 9999864444445544

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.40  E-value=0.0039  Score=61.11  Aligned_cols=28  Identities=43%  Similarity=0.679  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..+.+|.|.|++||||||+++.|+..++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999998776

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.40  E-value=0.0017  Score=64.94  Aligned_cols=32  Identities=28%  Similarity=0.236  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.-|||.|+||+|||++|+.||..++.+++.
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34578999999999999999999999987653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.38  E-value=0.0017  Score=57.58  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...++|.|++|+||||++..++..+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.37  E-value=0.0022  Score=63.34  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      .|..++|.|+||+||||+++.||..+|...
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            456789999999999999999999998764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.34  E-value=0.0031  Score=58.91  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      |.-++|.|+|||||||+++.|+..++...+.
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~   79 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT   79 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4459999999999999999999998876553

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.31  E-value=0.005  Score=63.48  Aligned_cols=31  Identities=29%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN--LPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~V  189 (473)
                      .|.-+||.|+||+|||++|+.||..+|  ++++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~   94 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFC   94 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence            457899999999999999999999998  6654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.31  E-value=0.0072  Score=52.28  Aligned_cols=24  Identities=25%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-|+|.|++|+|||++|+.|+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            457999999999999999999876

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.30  E-value=0.0026  Score=61.43  Aligned_cols=40  Identities=18%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ++|.|+|.+||||||+|..|+.++|++++..+|.+++.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5899999999999999999999899997766788776543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.28  E-value=0.0043  Score=60.61  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +..++|.|+||+|||++|+.++..++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            368999999999999999999999974

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.27  E-value=0.0027  Score=63.70  Aligned_cols=31  Identities=23%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+..|||.|+||+|||++|+.+|.+++.+++
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~  177 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF  177 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence            3568999999999999999999999998765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0032  Score=63.16  Aligned_cols=37  Identities=5%  Similarity=0.022  Sum_probs=30.8

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          148 YRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       148 Y~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      |.++........|..++|.|+||+|||++++.++..+
T Consensus        33 ~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           33 FLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4444555556788899999999999999999999988

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.24  E-value=0.0026  Score=57.13  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      |..++|.|++|+||||+|..|+..+
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999877

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.22  E-value=0.0055  Score=58.29  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=23.9

Q ss_pred             CCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+|. .++|.|+||+||||+|+.|+..+
T Consensus        44 ~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           44 NRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             TSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3444 79999999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.22  E-value=0.01  Score=56.44  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      |.-++|.|+|||||||+++.|+..++...+.
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~  103 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT  103 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence            3448999999999999999999998866553

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.16  E-value=0.0032  Score=66.08  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+..++|+|+||+||||+|+.||..+|+.++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            34689999999999999999999999987653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.15  E-value=0.0052  Score=59.56  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V  189 (473)
                      .+..++|.|+||+||||+++.++..+   +.+++
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~   69 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI   69 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence            34568999999999999999999988   66543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.14  E-value=0.012  Score=58.08  Aligned_cols=57  Identities=23%  Similarity=0.477  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          128 EANLFKLMERRGYGEEYISRYRMMTRFHHQR--VPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       128 e~~v~~lL~~~~yge~~a~rY~l~~~~~~~~--~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ...|..+|.-++|...+...|  +..+...+  +...|+|.||||+|||++|..||..+++
T Consensus        72 ~n~i~~~l~~qg~~~~~~~~~--l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A           72 SNRIYKILELNGYDPQYAASV--FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             GCHHHHHHHHTTCCHHHHHHH--HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHHcCCCHHHHHHH--HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            456777777778876543332  34444433  2347999999999999999999997654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.07  E-value=0.0031  Score=57.41  Aligned_cols=27  Identities=30%  Similarity=0.589  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +.+.|.|++||||||+.+.|+..+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            368999999999999999999988744

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.05  E-value=0.0029  Score=61.33  Aligned_cols=28  Identities=29%  Similarity=0.427  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...+..++|.|++|+||||+++.++..+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999987

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.02  E-value=0.0028  Score=60.69  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+..++|.|++|+||||+|+.++..++.+++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4567899999999999999999999988765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.00  E-value=0.0036  Score=70.13  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.-||+.|+||||||++|+.+|..+|.+++.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~  268 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            468899999999999999999999999988664

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.00  E-value=0.0052  Score=59.73  Aligned_cols=30  Identities=43%  Similarity=0.533  Sum_probs=26.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .+.|..++|.|++|+||||+|+.++..++.
T Consensus        35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345668999999999999999999998864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.98  E-value=0.0044  Score=63.96  Aligned_cols=31  Identities=29%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~V  189 (473)
                      .|.-|||.|+||+|||++|+.||..+ +.+++
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~  197 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF  197 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence            45789999999999999999999999 65543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.98  E-value=0.0048  Score=53.42  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .-|+|.|++|+|||++|+.++...+ +++
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~   55 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT-PWV   55 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence            3478999999999999999988776 443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.98  E-value=0.0051  Score=63.97  Aligned_cols=32  Identities=22%  Similarity=0.229  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+..++|.|+||+||||+|+.|+..++..++
T Consensus        48 ~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~   79 (447)
T 3pvs_A           48 GHLHSMILWGPPGTGKTTLAEVIARYANADVE   79 (447)
T ss_dssp             TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            34457899999999999999999999987754

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.97  E-value=0.007  Score=57.38  Aligned_cols=41  Identities=24%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC---CCeEEcchhHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN---LPNVLQTDMVYELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~~Vi~tD~ir~~L  199 (473)
                      .+++|+|+|.+||||+|+|..|..++|   ++.|..+|.+++..
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~   53 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY   53 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHH
Confidence            457999999999999999999998885   55666789999643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.95  E-value=0.0072  Score=63.66  Aligned_cols=34  Identities=29%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ...|.-|||.|+||+|||++|+.|+..++.+++.
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~  268 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            3456789999999999999999999999987653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.95  E-value=0.004  Score=60.11  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...+..++|.|++|+||||+++.++..+
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999987

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.93  E-value=0.0052  Score=64.81  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      +.|.-|+|.|+||+||||+|+.++..++.+++.
T Consensus        47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            456679999999999999999999999988763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.91  E-value=0.0079  Score=58.93  Aligned_cols=27  Identities=26%  Similarity=0.525  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.|. ++|.|++|+||||+++.|+..+.
T Consensus        45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           45 KLPH-LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            3454 89999999999999999999863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.87  E-value=0.0037  Score=57.10  Aligned_cols=26  Identities=31%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.++.|+|++|+||||+.+.|...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            35789999999999999999987653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.87  E-value=0.0041  Score=60.37  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .++|.|+||+|||++|+.|+..++.+++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            5799999999999999999999987754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.83  E-value=0.0059  Score=57.32  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ++.+|+|.|++|+|||||+..|+..+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            356899999999999999999998765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.82  E-value=0.011  Score=57.65  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|.|++|+||||+++.++..+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999988

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.80  E-value=0.009  Score=63.41  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..+.+++|.|+|||||||+|+.|+..++.+++
T Consensus       106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            35668999999999999999999999986654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.79  E-value=0.0058  Score=60.67  Aligned_cols=28  Identities=46%  Similarity=0.623  Sum_probs=25.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...+.+|.|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4567899999999999999999999866

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.74  E-value=0.0069  Score=55.97  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=16.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH-Hhc
Q 011994          160 PLVILVCGTACVGKSTIATQLA-QRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA-~~L  184 (473)
                      ..+|.|.|++||||||+++.|+ ..+
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4589999999999999999998 655

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.72  E-value=0.0066  Score=57.16  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .....++.|.|++|||||||.+.|+..+.
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            34456999999999999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.70  E-value=0.0079  Score=57.99  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++|.|+||+||||+|+.|+..++
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.63  E-value=0.0057  Score=56.71  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .|+|+||+|+|||||+..|...+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999999988763

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.61  E-value=0.007  Score=55.54  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+|.|+|++||||||++..|+..|
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4589999999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.59  E-value=0.0075  Score=55.02  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .-++.|.|++||||||+.+.|+..+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35899999999999999999998764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.59  E-value=0.011  Score=58.18  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=28.8

Q ss_pred             hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       154 ~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +...+.|..++|.|++|+||||+|..+|+.+...
T Consensus        18 i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           18 YQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             HHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            3345567889999999999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.58  E-value=0.0063  Score=65.30  Aligned_cols=41  Identities=34%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg----~~~-Vi~tD~ir~~L  199 (473)
                      +..+|+|+|++||||||+++.|+..++    ... ++.+|.+++.+
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l  413 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL  413 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh
Confidence            467999999999999999999999985    223 35778887654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.58  E-value=0.01  Score=56.20  Aligned_cols=26  Identities=31%  Similarity=0.576  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.|. ++|.|++|+||||+|..++..+
T Consensus        41 ~~~~-~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           41 NMPH-MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence            3455 9999999999999999999886

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.55  E-value=0.011  Score=56.22  Aligned_cols=24  Identities=42%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++|.|++|+||||+|+.++..++
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            489999999999999999999863

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.48  E-value=0.0077  Score=55.91  Aligned_cols=25  Identities=28%  Similarity=0.616  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++.|.|++||||||+++.|+..+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999999866

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.47  E-value=0.0089  Score=57.71  Aligned_cols=25  Identities=40%  Similarity=0.376  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .|+|.|+||+|||++|+.|+..++-
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~~   71 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLPE   71 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCcc
Confidence            3899999999999999999998863

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.45  E-value=0.0067  Score=58.93  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.|. ++|.|++|+||||+++.|+..+
T Consensus        35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           35 DLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            3466 9999999999999999999965

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.44  E-value=0.0076  Score=54.40  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --++.|.|+|||||||++..|+..+
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998743

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.42  E-value=0.0066  Score=56.95  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .-|+|.|+||+||||+|..|.. .|... +++|.+.
T Consensus        17 ~gvli~G~SGaGKStlal~L~~-rG~~l-vaDD~v~   50 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALID-RGHQL-VCDDVID   50 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH-TTCEE-EESSEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH-cCCeE-ecCCEEE
Confidence            4689999999999999999987 47764 5777654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.42  E-value=0.0068  Score=62.10  Aligned_cols=31  Identities=32%  Similarity=0.456  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      +....|+|.|++|+||||+++.||..+++++
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3345789999999999999999999998765

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.42  E-value=0.0087  Score=56.59  Aligned_cols=25  Identities=36%  Similarity=0.604  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .|. ++|.|++|+||||+|+.++..+
T Consensus        38 ~~~-~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           38 IPH-LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCC-EEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCe-EEEECcCCcCHHHHHHHHHHHh
Confidence            344 8999999999999999999987

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.41  E-value=0.0089  Score=53.70  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+++|.|+||+||||++..|+..+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.38  E-value=0.008  Score=53.04  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...++|.|++|+||||+++.++..+
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3478999999999999999999877

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.33  E-value=0.018  Score=59.46  Aligned_cols=25  Identities=12%  Similarity=0.291  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..++|.|++|+||||+|+.++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999987

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.30  E-value=0.029  Score=53.75  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..|+|.||||+||||+|..|+..++-.
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g~   85 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQGA   85 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            479999999999999999999988543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.29  E-value=0.017  Score=52.07  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+.+|+|.|.+|+||||+...|+..+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            456889999999999999999998763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.28  E-value=0.057  Score=53.87  Aligned_cols=33  Identities=24%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL---NLPN  188 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~  188 (473)
                      ....+.+|.|+|.||+||||++..|+..+   |...
T Consensus        75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV  110 (355)
T 3p32_A           75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV  110 (355)
T ss_dssp             GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCce
Confidence            34567899999999999999999999876   5543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.27  E-value=0.012  Score=60.34  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=27.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      -..+.+|+|.|+||+||||+++.|+..++...+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~  198 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKAL  198 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence            345679999999999999999999998876544

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.25  E-value=0.0085  Score=55.67  Aligned_cols=26  Identities=38%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      +|+|.|.+||||||+|..|+.. |.+.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            3799999999999999999987 7653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.20  E-value=0.017  Score=59.94  Aligned_cols=27  Identities=37%  Similarity=0.465  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.+..++|.|+||+|||++|+.||..+
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            445567999999999999999999987

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.13  E-value=0.012  Score=52.72  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..+++|.|+||+||||++..|+...+.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~~~~~   46 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGLLSGK   46 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            458999999999999999999874443

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.12  E-value=0.014  Score=54.42  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+++++|+|+||+|||++|..++..
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999999886543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.11  E-value=0.016  Score=52.55  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++..|+|+|.+|+||||+...|+..+
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456788888999999999999999875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.11  E-value=0.016  Score=61.44  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|.-|+|.|+||+||||+|+.|+..++.+++.
T Consensus        63 ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            35569999999999999999999999877653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.04  E-value=0.033  Score=52.27  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +..|+|.|++|+|||++|+.|+..++
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            34678999999999999999998874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.94  E-value=0.011  Score=66.25  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      +.|.-||+.||||||||.+|+.+|..++.+++.
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~  541 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS  541 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence            346679999999999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.89  E-value=0.017  Score=52.79  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+++|+|++|+||||+...|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            3478999999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.89  E-value=0.016  Score=53.85  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      .++.+|.|.|++||||||+++.|+.. +...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v   47 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI   47 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence            45689999999999999999999876 4443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.88  E-value=0.017  Score=51.78  Aligned_cols=26  Identities=19%  Similarity=0.408  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..-++.|.|++|+||||+.+.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34589999999999999999999877

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.88  E-value=0.015  Score=53.00  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+++|.|+||+||||++..|+..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            358999999999999999999984

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.82  E-value=0.013  Score=53.93  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++.|.|++|+||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58899999999999999999876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.81  E-value=0.02  Score=53.15  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL--NLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~  188 (473)
                      .++.++++.|.+|+||||++..|+..+  |...
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v   44 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV   44 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence            457899999999999999999999766  5544

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.81  E-value=0.015  Score=52.95  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+++|.|+||+||||++..++..+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999998887643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.78  E-value=0.042  Score=59.78  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=27.0

Q ss_pred             CCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPL-VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +|. .++|.|+||+|||++|+.|+..++.+++
T Consensus       486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~  517 (758)
T 1r6b_X          486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence            454 7999999999999999999999986654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.61  E-value=0.02  Score=52.12  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++++|++|+||||++..++.++
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999998888765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.60  E-value=0.019  Score=55.34  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --+++|+|++||||||+.+.|+..+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhC
Confidence            3589999999999999999998765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.58  E-value=0.039  Score=54.18  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.7

Q ss_pred             CCCeEEEE--EcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILV--CGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI--~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+..++|  .|++|+||||+++.++..+
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            35678888  9999999999999999876

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.55  E-value=0.033  Score=60.89  Aligned_cols=27  Identities=37%  Similarity=0.465  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.+..++|.|+||+|||++|+.||..+
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            445578999999999999999999997

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.54  E-value=0.023  Score=50.07  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      |-+.+|+|++||||||+...|..-++.
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            448899999999999999999887753

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.54  E-value=0.054  Score=57.40  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .|+|.|+||+|||++|+.||..++.
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHhh
Confidence            6899999999999999999998853

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.50  E-value=0.021  Score=56.13  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +..++|.|++|+|||++|..|+..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999998553

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.41  E-value=0.021  Score=54.72  Aligned_cols=25  Identities=36%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --+++|+|+||+||||++..|+..+
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.33  E-value=0.02  Score=54.27  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            489999999999999999997644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.33  E-value=0.025  Score=48.82  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      +++..|++.|.+|+|||||...|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            567899999999999999998775

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.27  E-value=0.044  Score=59.86  Aligned_cols=27  Identities=30%  Similarity=0.592  Sum_probs=24.0

Q ss_pred             CCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+|. .++|.|+||+|||++|+.|+..+
T Consensus       518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          518 KRPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             TSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455 79999999999999999999987

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.27  E-value=0.029  Score=47.32  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|++.|.+|+||||+...|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3567999999999999999999753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.19  E-value=0.028  Score=46.96  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|++.|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.18  E-value=0.031  Score=46.82  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+|.|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.18  E-value=0.025  Score=53.90  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++|.|+||+||||++..|+..+
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999998643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.15  E-value=0.021  Score=53.63  Aligned_cols=24  Identities=25%  Similarity=0.205  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            488999999999999999997544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.07  E-value=0.043  Score=46.54  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +++..|++.|.+|+|||||...|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999964

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.06  E-value=0.016  Score=52.80  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++.|+|++||||||++..|+..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378899999999999999998776

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.02  E-value=0.033  Score=47.64  Aligned_cols=26  Identities=19%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+..|+|.|.+|+||||+...|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999998753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.01  E-value=0.043  Score=47.41  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +.+..|+|.|.+|+|||||...|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34678999999999999999999764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.00  E-value=0.03  Score=53.46  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.99  E-value=0.035  Score=46.57  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|++.|.+|+||||+...|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.98  E-value=0.029  Score=55.91  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..+.|.|++|||||||++.|+..+...
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            478999999999999999999887654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.98  E-value=0.033  Score=48.42  Aligned_cols=24  Identities=38%  Similarity=0.439  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+|.|.+|+|||||...|...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.94  E-value=0.035  Score=50.52  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -.+++|+|.||+|||++|..++..
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            358999999999999999987643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.94  E-value=0.026  Score=53.48  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999997644

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=93.93  E-value=0.038  Score=48.03  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +++..|++.|.+|+||||+...|...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45688999999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.92  E-value=0.036  Score=47.18  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+..|+|.|.+|+|||||...|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            346799999999999999998864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.91  E-value=0.033  Score=49.46  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=20.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .++..|++.|.+|+||||+...|..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999975

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.90  E-value=0.043  Score=46.99  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .++..|+|.|.+|+||||+...|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3467899999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.88  E-value=0.041  Score=48.11  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+..|+|.|.+|+||||+...|....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.88  E-value=0.041  Score=49.37  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+..|+|.|++|+||||+...|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.84  E-value=0.033  Score=53.10  Aligned_cols=23  Identities=35%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -++.|.|++|||||||.+.|+.-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.80  E-value=0.043  Score=46.99  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ++..|+|.|.+|+|||||...|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4568999999999999999999753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.78  E-value=0.029  Score=54.06  Aligned_cols=24  Identities=29%  Similarity=0.226  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.77  E-value=0.038  Score=47.71  Aligned_cols=22  Identities=41%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..|+|.|.+|+|||||...|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999975

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.71  E-value=0.043  Score=46.21  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+|.|.+|+|||||...|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.70  E-value=0.031  Score=53.02  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999997654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.70  E-value=0.026  Score=52.70  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -++.|.|++|||||||.+.|+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999853

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.70  E-value=0.04  Score=49.06  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...|.|.|++|+|||||...|+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3689999999999999999998643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.68  E-value=0.031  Score=53.00  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --++.|.|++|||||||.+.|+.-+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999998654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.66  E-value=0.031  Score=53.50  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999997654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.66  E-value=0.031  Score=54.60  Aligned_cols=24  Identities=33%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            489999999999999999997655

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.66  E-value=0.037  Score=53.47  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -++.|.|++|||||||.+.|+.-
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.65  E-value=0.046  Score=48.69  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|+|.|++|+|||||...|+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            57899999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.65  E-value=0.031  Score=54.10  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            488999999999999999998654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.62  E-value=0.041  Score=52.42  Aligned_cols=27  Identities=22%  Similarity=0.203  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .+++|.|++|+||||++..++..++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~   58 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGI   58 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEE
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcE
Confidence            489999999999999999999988733

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.61  E-value=0.053  Score=51.65  Aligned_cols=26  Identities=42%  Similarity=0.528  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +++|.|++|+||||++..++..++..
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~~~   57 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELNLP   57 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            89999999999999999999987644

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.59  E-value=0.048  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .|++.|.+|+||||+...|....
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.58  E-value=0.033  Score=52.42  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999997654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.58  E-value=0.033  Score=53.18  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999997654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.55  E-value=0.038  Score=46.55  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|++.|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.53  E-value=0.039  Score=55.89  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-+|+|+|++||||||+...|+..+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3589999999999999999998866

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.52  E-value=0.04  Score=55.81  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -+|+|+|++||||||+.+.|+..+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            389999999999999999998766

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.52  E-value=0.04  Score=54.93  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --++.|.|++|||||||++.|+.-+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3589999999999999999999877

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.46  E-value=0.048  Score=46.56  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|+|.|.+|+|||||...|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.46  E-value=0.035  Score=53.79  Aligned_cols=24  Identities=33%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCC
Confidence            489999999999999999998654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.44  E-value=0.048  Score=48.74  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+...|+|.|.+|+|||||...|....
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999998654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.44  E-value=0.078  Score=51.13  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V  189 (473)
                      -+.|++.|.+|+||||++..+|..+   |..++
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~   38 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM   38 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence            3679999999999999999998776   77654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.43  E-value=0.2  Score=52.68  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+.+|.|.|+.|+||||||..++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            457999999999999999999995

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.38  E-value=0.042  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|++.|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.37  E-value=0.041  Score=48.01  Aligned_cols=24  Identities=38%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+++|.+|+|||||...|...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.36  E-value=0.032  Score=52.53  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999997654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.36  E-value=0.038  Score=53.60  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999997655

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.35  E-value=0.05  Score=45.89  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|++.|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.34  E-value=0.048  Score=47.00  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|+|.|.+|+|||||...|...
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.34  E-value=0.046  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.642  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|++.|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.33  E-value=0.038  Score=53.25  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            489999999999999999997654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.33  E-value=0.038  Score=53.15  Aligned_cols=24  Identities=33%  Similarity=0.302  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            489999999999999999997654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.31  E-value=0.074  Score=57.88  Aligned_cols=28  Identities=39%  Similarity=0.465  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.+..++|.|+||+||||+|+.|+..+
T Consensus       204 ~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          204 RRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            3456678999999999999999999987

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=93.31  E-value=0.045  Score=53.00  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+.|.|++|+||||+.+.|+..+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.30  E-value=0.051  Score=45.91  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ++.|+|.|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35799999999999999999975

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.30  E-value=0.039  Score=53.22  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999997654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.30  E-value=0.053  Score=60.31  Aligned_cols=27  Identities=37%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.+..++|.|+||+||||+++.||.++
T Consensus       189 ~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          189 RTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            444567899999999999999999987

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.30  E-value=0.04  Score=47.13  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+|.|.+|+||||+...|...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.26  E-value=0.04  Score=52.92  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            488999999999999999997644

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.25  E-value=0.048  Score=54.84  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .-|+|.|.+|+||||+|..|..+ |... +++|.+.
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~l-v~dD~~~  178 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR-GHRL-VADDNVE  178 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEE-EESSEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc-CCce-ecCCeEE
Confidence            46999999999999999999775 7764 4676554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.24  E-value=0.048  Score=55.36  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+++|.|+||+||||+|..++...|
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~G  148 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEALG  148 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhCC
Confidence            4789999999999999999998644

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.24  E-value=0.069  Score=46.90  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+..|+|.|.+|+|||||...|...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.24  E-value=0.042  Score=46.29  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|++.|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.24  E-value=0.04  Score=53.79  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            488999999999999999998655

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.23  E-value=0.053  Score=51.61  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      -.+++++|++|+||||++..++.++   |...++
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli   45 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV   45 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence            4699999999999999999999887   555444

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.18  E-value=0.048  Score=47.02  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++.|+|.|.+|+|||||...|....
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC
Confidence            4679999999999999999997543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.14  E-value=0.059  Score=48.36  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...++.|+|.|.+|+||||+...|...
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            345688999999999999999988753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.08  E-value=0.059  Score=46.23  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|+|.|.+|+|||||...|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3468999999999999999999854

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=93.06  E-value=0.054  Score=52.96  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+..|+|.|+||+|||++|+.++...
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhC
Confidence            34568999999999999999999855

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.04  E-value=0.044  Score=52.58  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            488999999999999999997654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.96  E-value=0.061  Score=47.45  Aligned_cols=26  Identities=27%  Similarity=0.569  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .....|+|.|.+|+|||||...|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            34578999999999999999998754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=92.94  E-value=0.085  Score=52.01  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..++|.|++|+||||+|..||..+
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999999999853

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.94  E-value=0.064  Score=46.92  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.93  E-value=0.085  Score=47.20  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=24.6

Q ss_pred             HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       150 l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ++..+.-..++..|++.|.+|+|||||...|..
T Consensus        15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            333333334567899999999999999998853

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.91  E-value=0.069  Score=46.65  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|++.|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999999753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.90  E-value=0.043  Score=55.18  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +++|+|++||||||+.+.|+..+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            789999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.86  E-value=0.08  Score=46.26  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .....|+|.|.+|+|||||...|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            4467899999999999999999976

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.84  E-value=0.076  Score=45.60  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +...|+|.|.+|+||||+...|...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.84  E-value=0.072  Score=45.16  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..|+|.|.+|+|||||...|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999864

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=92.82  E-value=0.041  Score=55.33  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .-|+|.|.||+||||+|..|.. .|... +++|.+.
T Consensus       148 ~gvli~G~sG~GKStlal~l~~-~G~~l-v~DD~v~  181 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLIN-KNHLF-VGDDAIE  181 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT-TTCEE-EEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH-cCCEE-EeCCEEE
Confidence            4699999999999999999864 67664 5777654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=92.81  E-value=0.052  Score=60.38  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=23.6

Q ss_pred             CCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|. .++|.|++|+|||++|+.|+..+
T Consensus       586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          586 RPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            454 89999999999999999999988

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.81  E-value=0.056  Score=46.12  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      ....|+|.|.+|+|||||...|.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999885

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.80  E-value=0.22  Score=49.51  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+..|+++|.+|+||||+...|+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999998653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.78  E-value=0.063  Score=46.03  Aligned_cols=25  Identities=20%  Similarity=0.484  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|+|.|.+|+|||||...|...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3568999999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.78  E-value=0.076  Score=45.21  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...|+|.|.+|+||||+...|....
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4689999999999999999997643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=92.77  E-value=0.058  Score=57.69  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..++|.|+||+||||+|+.|+..++.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            36899999999999999999998853

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.76  E-value=0.062  Score=46.09  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|+|.|.+|+|||||...|...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.74  E-value=0.062  Score=55.61  Aligned_cols=26  Identities=42%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      --+|+|+|++||||||+...|+..+.
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            35899999999999999999988774

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.71  E-value=0.057  Score=47.43  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..|+|.|.+|+|||||...|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.71  E-value=0.053  Score=52.54  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998654

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=92.71  E-value=0.12  Score=47.94  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ  191 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~  191 (473)
                      -.+++++|++|+||||.+..++.++   |...++.
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            4699999999999999999999887   6666553

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.71  E-value=0.067  Score=46.75  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....|+|.|.+|+|||||...|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3467999999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.66  E-value=0.073  Score=46.00  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999999854

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.66  E-value=0.068  Score=46.84  Aligned_cols=25  Identities=16%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+..|+|+|.+|+|||||...|...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3568999999999999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.65  E-value=0.043  Score=48.80  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ....|.|.|++|+|||||...|+.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.63  E-value=0.078  Score=46.57  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.59  E-value=0.066  Score=53.64  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .-.++.|+|+||||||||+..|+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34699999999999999999999876

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=92.58  E-value=0.061  Score=54.68  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..+++|+|+||+|||||+..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34699999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.57  E-value=0.061  Score=45.79  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +..|+|.|.+|+|||||...|..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            36799999999999999999974

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.57  E-value=0.088  Score=46.45  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....|+|.|.+|+|||||...|...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.55  E-value=0.1  Score=52.26  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+|.|+|+||+|||||...|...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.53  E-value=0.063  Score=46.41  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999999754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=92.52  E-value=0.069  Score=52.44  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +--+++|+|.||+||||++..+|...
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34599999999999999999998654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=92.52  E-value=0.061  Score=54.82  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            488999999999999999998654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.48  E-value=0.088  Score=44.37  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|++.|.+|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.48  E-value=0.2  Score=49.66  Aligned_cols=28  Identities=32%  Similarity=0.271  Sum_probs=24.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .....+|.|.|++|+||||+...|+..+
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4556789999999999999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.46  E-value=0.092  Score=46.58  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .++..|+|+|.+|+|||||...|...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.43  E-value=0.089  Score=45.95  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ++...|+|.|.+|+||||+...|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999974

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.42  E-value=0.072  Score=45.04  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      ..|+|.|.+|+|||||...|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            468999999999999999884

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=92.33  E-value=0.072  Score=54.13  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            488999999999999999998654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.33  E-value=0.098  Score=45.25  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...|+|.|.+|+|||||.+.|....
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            4679999999999999998887654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=92.28  E-value=0.074  Score=54.09  Aligned_cols=24  Identities=25%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCC
Confidence            488999999999999999998654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.26  E-value=0.089  Score=46.05  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +++.|+|.|.+|+|||||...|...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999998753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=92.25  E-value=0.074  Score=54.13  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            488999999999999999998654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.23  E-value=0.081  Score=46.09  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .++.|+|.|.+|+|||||...|...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3568999999999999999999753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.22  E-value=0.1  Score=44.83  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|++.|.+|+|||||...|..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45799999999999999998875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.21  E-value=0.093  Score=52.31  Aligned_cols=28  Identities=29%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .....++.|.|+||+||||+...|+..+
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            3456799999999999999999998655

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=92.20  E-value=0.075  Score=54.62  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            488999999999999999998654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.16  E-value=0.065  Score=46.22  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +..|+|.|.+|+|||||...|..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46799999999999999999874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.15  E-value=0.081  Score=46.49  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +.+.|+|.|.+|+|||||...|...
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            3568999999999999999999753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.11  E-value=0.087  Score=46.81  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.+.|+|.|.+|+|||||...|..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            356899999999999999999975

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=92.10  E-value=0.077  Score=53.37  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..+++|.|+||+||||++..++...
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.10  E-value=0.065  Score=52.70  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            489999999999999999997544

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=92.09  E-value=0.19  Score=51.69  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++|.|++|+||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999877

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=92.06  E-value=0.081  Score=53.94  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCC
Confidence            488999999999999999998654

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=92.05  E-value=0.27  Score=49.30  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       121 ~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .+++++.++.+..+-.+         ...+-..++..+.|++|+|-|.-||||+|.++.|...|+-
T Consensus        56 ~~~k~~y~~~l~~lq~~---------L~~lQ~~~~~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldp  112 (304)
T 3czq_A           56 KLDREEYEETLTKLQIE---------LVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNP  112 (304)
T ss_dssp             CCCHHHHHHHHHHHHHH---------HHHHHHHHHHHCCCEEEEEEESTTSSHHHHHHHHHTTSCT
T ss_pred             cCCHHHHHHHHHHHHHH---------HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence            46677766666554332         1223333344567999999999999999999999999953

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.05  E-value=0.091  Score=45.61  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+|+|.+|+|||||...|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999999754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=92.04  E-value=0.081  Score=54.05  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            488999999999999999998644

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.01  E-value=0.056  Score=53.83  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +++|.|++||||||+.+.|+..+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            789999999999999999987763

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.98  E-value=0.085  Score=46.39  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..++.|+|.|.+|+|||||...|...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            34578999999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.98  E-value=0.09  Score=48.56  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .++.|+|.|.+|+|||||...|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4578999999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.97  E-value=0.11  Score=45.99  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +.+.|+|.|.+|+|||||...|...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999888754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.97  E-value=0.11  Score=45.87  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..+.|+|+|.+|+|||||...|..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            356899999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.95  E-value=0.09  Score=45.45  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|++.|.+|+||||+...|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5889999999999999999753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.94  E-value=0.1  Score=46.06  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....|+|.|.+|+|||||...|...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            4568999999999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.92  E-value=0.11  Score=45.03  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|+|.|.+|+||||+...|...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999998654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.90  E-value=0.089  Score=45.83  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +...|+|.|.+|+|||||...|...
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999753

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=91.89  E-value=0.092  Score=51.59  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+++|+|+||+||||++..|+...
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHH
Confidence            4599999999999999999999764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.80  E-value=0.11  Score=46.09  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ++...|+|.|.+|+|||||...|..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999998853

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=91.77  E-value=0.066  Score=54.18  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            488999999999999999998654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.74  E-value=0.09  Score=51.18  Aligned_cols=25  Identities=24%  Similarity=0.173  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...+++|+|+||+||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3469999999999999999999975

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.74  E-value=0.086  Score=54.28  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -++.|+|+||||||||+..|+..
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Confidence            48999999999999999988643

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=91.73  E-value=0.1  Score=52.83  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..+++|+|+||+||||+|..|+...
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34699999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.70  E-value=0.083  Score=45.43  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|++.|.+|+|||||...|...
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.66  E-value=0.056  Score=53.75  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|+|++|||||||.+.|+.-+
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            489999999999999999997655

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.65  E-value=0.12  Score=45.19  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999998753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=91.63  E-value=0.12  Score=51.53  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...+++|+|+||+||||++..|+..
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3469999999999999999999986

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.61  E-value=0.13  Score=45.40  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ....|+|.|.+|+|||||...|..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999998864

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=91.58  E-value=0.097  Score=54.59  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..+.+|+|.|++|+||||+|..++.
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            3467999999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.58  E-value=0.098  Score=53.55  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            488999999999999999998644

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=91.53  E-value=0.18  Score=54.45  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.++.|+|+|.+++|||||...|....
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~  191 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDL  191 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence            3456789999999999999999997543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.53  E-value=0.12  Score=48.29  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+..|+|.|.+|+|||||...|...-
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            346789999999999999999997543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.52  E-value=0.13  Score=45.16  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      |-+.+|.|++|+||||+...|.-.|
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999987655

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.52  E-value=0.096  Score=46.17  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.50  E-value=0.15  Score=49.87  Aligned_cols=24  Identities=29%  Similarity=0.547  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++.|.|+||+|||||.+.|+ .+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            488999999999999999998 553

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.49  E-value=0.13  Score=45.10  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.|+|.|.+|+|||||...|....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            4689999999999999999998654

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=91.43  E-value=0.28  Score=48.96  Aligned_cols=39  Identities=28%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM  194 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~  194 (473)
                      ......++++.|-.|+||||+|..||..+   |.++++ .+|.
T Consensus        22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   64 (349)
T 3ug7_A           22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP   64 (349)
T ss_dssp             SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred             ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            34556799999999999999999998776   776554 4565

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.43  E-value=0.097  Score=53.81  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            489999999999999999998543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=91.41  E-value=0.096  Score=45.71  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      +++..|++.|.+|+||||+...|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999873

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=91.37  E-value=0.12  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +.|.|.|.+|+|||||...|...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.34  E-value=0.12  Score=45.22  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+..|+|.|.+|+|||||...|..
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999998853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.32  E-value=0.089  Score=55.05  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            478999999999999999998765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.30  E-value=0.13  Score=45.31  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999998653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.30  E-value=0.12  Score=46.79  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ++..|+|.|.+|+|||||...|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            457899999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=91.27  E-value=0.065  Score=54.24  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+--+
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            488999999999999999998644

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=91.26  E-value=0.05  Score=58.51  Aligned_cols=27  Identities=19%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ..|||.|+||+|||++|+.|+..++..
T Consensus       328 ~~vLL~GppGtGKT~LAr~la~~~~r~  354 (595)
T 3f9v_A          328 IHILIIGDPGTAKSQMLQFISRVAPRA  354 (595)
T ss_dssp             CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred             cceEEECCCchHHHHHHHHHHHhCCCc
Confidence            368999999999999999999888644

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=91.24  E-value=0.13  Score=52.17  Aligned_cols=25  Identities=32%  Similarity=0.329  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +++..|++.|.+||||||+++++.-
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHH
Confidence            5578899999999999999999954

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.23  E-value=0.11  Score=46.12  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|+|.|.+|+|||||...|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            46799999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.21  E-value=0.15  Score=44.81  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457999999999999999999753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=91.17  E-value=0.088  Score=55.81  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+|+|+|++||||||+.+.|+..+.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4689999999999999999987663

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=91.17  E-value=0.18  Score=50.45  Aligned_cols=37  Identities=41%  Similarity=0.441  Sum_probs=29.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cch
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTD  193 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD  193 (473)
                      .....++++.|-.|+||||+|..||..+   |.++++ .+|
T Consensus        13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D   53 (334)
T 3iqw_A           13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD   53 (334)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            3446789999999999999999999877   555443 445

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=91.14  E-value=0.12  Score=53.32  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --+++|+|+||+||||++..++..+
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.12  E-value=0.11  Score=45.51  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +...|+|.|.+|+|||||...|...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999988644

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.04  E-value=0.14  Score=46.62  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+..|+|.|.+|+|||||...|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999999998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.01  E-value=0.11  Score=46.33  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+..|+|.|.+|+|||||...|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            457899999999999999999864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=90.99  E-value=0.2  Score=53.67  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNVLQ  191 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~  191 (473)
                      .+++|.|+||+||||++..|+..+   |...++.
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            488999999999999999998755   6665543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=90.96  E-value=0.41  Score=50.21  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .++.|+|+|.||+|||||...|...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567999999999999999988653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.88  E-value=0.14  Score=46.40  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....|+|.|.+|+|||||...|...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=90.83  E-value=0.095  Score=51.51  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++|.|++||||||+.+.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            378899999999999999998643

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.79  E-value=0.19  Score=49.41  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM  194 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~  194 (473)
                      ..++++.|-.|+||||+|..||..+   |.++++ .+|.
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5799999999999999999998766   666543 4554

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=90.73  E-value=0.15  Score=46.29  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      .|.|.|-.|+||||+|..||..|   |.++++
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~Vll   33 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYA   33 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            35669999999999999999887   666543

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=90.66  E-value=0.096  Score=52.93  Aligned_cols=28  Identities=25%  Similarity=0.217  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +++.|.|-|+-|+||||+++.|++.|+.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4578999999999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=90.59  E-value=0.12  Score=50.50  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++.|.|+||+|||||.+.|+..+
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            378999999999999999997544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.57  E-value=0.95  Score=57.70  Aligned_cols=68  Identities=10%  Similarity=0.212  Sum_probs=45.5

Q ss_pred             hcCcccccHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          116 DNSLLDVSQSDLEANLFKLMERRGYGEE--YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       116 ~~~v~~I~~~eLe~~v~~lL~~~~yge~--~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +-..+.....+|+++|.+.+.+.++...  .+.+.--..+....|  .=+|++|++|+||||.-+.|++.+.
T Consensus       862 gv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vR--hGvmlVGp~gsGKTt~~~~L~~al~  931 (3245)
T 3vkg_A          862 GSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNIN--HGVMMVGPSGGGKTTSWEVYLEAIE  931 (3245)
T ss_dssp             TCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTC--SEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhe--eeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4445667778899999999988776432  222211111111222  3589999999999999999998874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.54  E-value=0.15  Score=45.65  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +..|+|.|.+|+|||||...|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            46799999999999999999875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.51  E-value=0.14  Score=46.37  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....|+|.|.+|+|||||...|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3468999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.51  E-value=0.13  Score=46.06  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      ...|+|.|.+|+|||||...|.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999885

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.45  E-value=0.17  Score=44.69  Aligned_cols=23  Identities=22%  Similarity=0.559  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+.|+|.|.+|+|||||...|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999998853

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.41  E-value=0.15  Score=51.99  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .++.|.|+||+|||||...|+..+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            4889999999999999999985443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.36  E-value=0.11  Score=44.92  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=10.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|+|.|.+|+|||||...|..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46799999999999999988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.32  E-value=0.15  Score=45.19  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +...|+|.|.+|+|||||...|...
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhc
Confidence            4468999999999999999877553

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.32  E-value=0.18  Score=45.01  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+.|+|.|.+|+|||||...|...
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999998753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=90.27  E-value=0.16  Score=46.75  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      |-+.+|.|++|+||||+...|.-.|+.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            568999999999999999998766643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=89.70  E-value=0.054  Score=48.17  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .++..|+|.|.+|+|||||...|..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4567899999999999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.16  E-value=0.17  Score=45.06  Aligned_cols=24  Identities=13%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999998753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=90.16  E-value=0.18  Score=44.96  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ....|+|.|.+|+|||||...|...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3467999999999999999988753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=90.15  E-value=0.15  Score=52.32  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --+++|+|.||+||||++..+|...
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3599999999999999999998654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.14  E-value=0.19  Score=43.95  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999999864

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=89.99  E-value=0.16  Score=54.51  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE------cchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL------QTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi------~tD~ir~~Lr  200 (473)
                      +.+|.||||+|||+++..+...+   |.+.++      +.|.+.+.+.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~  254 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA  254 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHH
Confidence            67999999999998877766555   555433      3466665554

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=89.92  E-value=0.16  Score=53.35  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQL  180 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~L  180 (473)
                      --+++|.|+||||||||+..+
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHH
Confidence            358999999999999999994

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.80  E-value=0.21  Score=44.64  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhC
Confidence            468999999999999999999753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.80  E-value=0.17  Score=53.74  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+-.+
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999998654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=89.75  E-value=0.17  Score=51.01  Aligned_cols=25  Identities=8%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --+++|+|.||+||||++..+|..+
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=89.73  E-value=0.26  Score=46.69  Aligned_cols=24  Identities=38%  Similarity=0.501  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+..|+++|.+|+|||||...|..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhC
Confidence            467899999999999999999874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.72  E-value=0.21  Score=44.44  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..|+|.|.+|+|||||..+|...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=89.57  E-value=0.2  Score=51.86  Aligned_cols=26  Identities=27%  Similarity=0.229  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.++.|.|++|+||||+.+.|+..+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            34689999999999999999998643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=89.55  E-value=0.18  Score=52.94  Aligned_cols=24  Identities=21%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -+++|.|++|+|||||+..|+..+
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=89.53  E-value=0.19  Score=50.98  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..+++|+|+||+||||+|..++...
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            34589999999999999999998754

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=89.45  E-value=0.31  Score=51.66  Aligned_cols=37  Identities=32%  Similarity=0.467  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM  194 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~  194 (473)
                      +.+.++++.|.+|+||||+|..||..+   |.+.++ .+|.
T Consensus         6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            345789999999999999999998876   766543 5664

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=89.31  E-value=0.19  Score=52.16  Aligned_cols=25  Identities=20%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      --+++|+|.||+||||++..+|...
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHH
Confidence            3599999999999999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.22  E-value=0.28  Score=44.47  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+.|+|.|.+|+|||||...|...
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999998753

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=89.20  E-value=0.76  Score=57.75  Aligned_cols=61  Identities=11%  Similarity=0.274  Sum_probs=38.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          122 VSQSDLEANLFKLMERRGYGEE--YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       122 I~~~eLe~~v~~lL~~~~yge~--~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ....+|++.+.+.+.+.++...  ...+..-+.+....+  .-||+.|++||||||+.+.|+..+
T Consensus       885 ~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r--~gvmlvGptgsGKTt~~~~La~al  947 (2695)
T 4akg_A          885 LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQ--QALILVGKAGCGKTATWKTVIDAM  947 (2695)
T ss_dssp             SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhc--ceEEEECCCCCCHHHHHHHHHHHH
Confidence            4556788888888777665422  111111111111223  248999999999999999999875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=89.18  E-value=0.19  Score=47.84  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|++.|.+|+|||||...|..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            46799999999999999999964

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=89.16  E-value=0.098  Score=46.85  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...+.|+|.|.+|+|||||...|..
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999988763

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=89.15  E-value=0.13  Score=45.99  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457899999999999999998654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=89.13  E-value=0.21  Score=48.85  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..-|+|.|++|+|||||...|..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            46789999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=89.12  E-value=0.2  Score=50.86  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +++|+|+||+|||||+..++...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999998887544

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=89.12  E-value=0.36  Score=47.67  Aligned_cols=37  Identities=32%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM  194 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~  194 (473)
                      ....++++.|-.|+||||+|..||..+   |.++++ .+|.
T Consensus        17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~   57 (329)
T 2woo_A           17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP   57 (329)
T ss_dssp             TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            345688999999999999999999776   666544 4554

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.09  E-value=0.27  Score=44.52  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999999753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.03  E-value=0.19  Score=52.47  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHh
Q 011994          163 ILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +.|.|++|+|||||...|+..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            999999999999999999754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=88.92  E-value=0.26  Score=47.58  Aligned_cols=24  Identities=17%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|.|.|.||+|||||...|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.92  E-value=0.33  Score=54.08  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+.+|.|.|+.|+||||||..++.+
T Consensus       145 ~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          145 GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            45679999999999999999988765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=88.88  E-value=0.38  Score=45.83  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      -.+.+++|+.|+||||.+..++.++   |...++
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli   61 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV   61 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            4699999999999999999999887   666555

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=88.86  E-value=0.5  Score=49.39  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ..+.|.|+|.+|+|||||...|...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3567999999999999999999865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=88.83  E-value=0.2  Score=48.85  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ...|.|.|+||+|||||...|..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            34799999999999999999974

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=88.80  E-value=0.25  Score=49.67  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=27.6

Q ss_pred             HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHH
Q 011994          409 DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGY  450 (473)
Q Consensus       409 ~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~  450 (473)
                      +..+...+.|++||.    |+..    ...++.+|++.|...
T Consensus       312 ~~~~~~~~~~~~fl~----Q~~~----~~~~~~~~~~~~~~~  345 (347)
T 2obl_A          312 DKAIKNRKLIQNFIQ----QSTK----DISSYEKTIESLFKV  345 (347)
T ss_dssp             HHHHHTHHHHHHHHC----CCTT----CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC----CCCC----CCCCHHHHHHHHHHH
Confidence            688999999999999    5553    567889999988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=88.76  E-value=0.099  Score=45.85  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=5.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +..|+|.|.+|+|||||...|...
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEC-----------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999988643

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=88.71  E-value=0.47  Score=46.31  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcC-CCCcHHHHHHHHHHhc---CCCeEE
Q 011994          158 RVPLVILVCGT-ACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~-~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      ..+.+|+|+|+ +|+||||+|..||..+   |.++++
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL  138 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF  138 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence            34567888876 8999999999998876   666554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=88.65  E-value=0.22  Score=52.94  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999998755

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.65  E-value=0.23  Score=52.72  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            377899999999999999998654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=88.64  E-value=0.23  Score=52.52  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            589999999999999999998755

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=88.55  E-value=0.26  Score=51.16  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=28.0

Q ss_pred             HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHH
Q 011994          409 DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGY  450 (473)
Q Consensus       409 ~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~  450 (473)
                      +..+...+.|++||.    |++.    ...++.+|++.|...
T Consensus       401 ~~~i~~~~~~~~fl~----Q~~~----~~~~~~~~~~~~~~~  434 (438)
T 2dpy_A          401 DKAITLWPQLEAFLQ----QGIF----ERADWEDSLQALDLI  434 (438)
T ss_dssp             HHHHTTHHHHHHHHC----CCTT----CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC----CCCC----CCCCHHHHHHHHHHH
Confidence            588999999999999    6653    667889999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=88.53  E-value=0.28  Score=46.93  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...|+|.|.+|+|||||...|...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.52  E-value=0.2  Score=53.30  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++.|.|++|||||||.+.|+..+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998654

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=88.47  E-value=0.39  Score=44.73  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      +|.|.|-.|+||||+|..||..|   |.++++
T Consensus         3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll   34 (269)
T 1cp2_A            3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence            56668999999999999999876   666544

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=88.40  E-value=0.42  Score=43.15  Aligned_cols=29  Identities=24%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             EEEEEc-CCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCG-TACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G-~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      +|+|+| -+|+||||++..||..|   |.++.+
T Consensus         3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll   35 (224)
T 1byi_A            3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            455665 48999999999999766   666543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=88.20  E-value=0.17  Score=45.58  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      ..+.|+|.|.+|+|||||...|.
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~   36 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHL   36 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBH
T ss_pred             cceEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	3e-05
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	2e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-04
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	3e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	5e-04
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	7e-04
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	0.003
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	0.003
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	0.003
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	0.004
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.004

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200
           + ++ G A VGKST   +LA +L+    ++ D++  ++ 
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVV 42

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLN 185
           P +I++ G    GK+ I+ +L + LN
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLN 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAP 206
           ++L+ G    GKSTIA  LA    +P V   +D ++  ++     P
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDP 51

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSS 219
           PLV+ V G    GK T   ++ ++    ++   ++    LR     P S        +  
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL----LRDERKNPDSQYGELIEKYIK 56

Query: 220 SEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL 265
             ++V   +    + R+        A K+   I     + D     
Sbjct: 57  EGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGW 102

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL-RTSTDAPLSSSPVW 213
           H   +    ++ G +  GKS +A+++A +L+   +    +               +    
Sbjct: 4   HDHHI---YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR 60

Query: 214 ARNFSSSEELVTEFVRECRIVRKGLAG 240
                +  +      R  ++     + 
Sbjct: 61  KPWLQALNDAAFAMQRTNKVSLIVCSA 87

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196
           P V+ V G    GK T    + +     ++   D++ 
Sbjct: 6   PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLR 42

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197
           IL+ GT  VGK+T+  +LA +  L  +   D+  E
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE 41

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197
           PL +++ G    GK T    +  +  L ++   D++  
Sbjct: 3   PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 40

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194
           T++     P  +L+ G    GK+T      +  N   +L   +
Sbjct: 1   TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPV 43

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194
            LV+ + G +  GK+T+A QL+Q L    +     
Sbjct: 22  RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189
           +I++ G +  GKS I   L   L  P +
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWL 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.97
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.94
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.86
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.85
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.85
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.8
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.76
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.63
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.59
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.59
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.55
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.54
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.5
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.49
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.47
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.46
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.45
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.42
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.4
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.4
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.39
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.3
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.28
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.28
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.27
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.19
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.95
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.83
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.82
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.73
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.68
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.67
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.58
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.55
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.52
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.52
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.44
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.43
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.42
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.41
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.38
d1okkd2	207	GTPase domain of the signal recognition particle r	97.34
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.33
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.3
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.3
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.25
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.24
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.24
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.23
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.2
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.17
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.16
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.12
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.09
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.07
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.02
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.96
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.9
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.82
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.79
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.7
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.67
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.63
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.59
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.54
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.54
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.48
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.47
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.45
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.24
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.22
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.16
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.11
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.01
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.91
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.85
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.75
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.75
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.69
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.52
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.5
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.5
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.46
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.46
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.29
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.14
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.12
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.08
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.01
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.96
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.79
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.73
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.71
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.61
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.53
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.52
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.37
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.26
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.21
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.07
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.07
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.02
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.78
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.66
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.53
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.47
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.44
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.35
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.29
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.23
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.23
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.18
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.11
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.03
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.02
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.98
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.94
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.9
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.86
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.78
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.77
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.69
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.61
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.47
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.41
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.29
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.29
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.26
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.15
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.15
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.15
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.15
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.14
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.13
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.11
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.1
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.07
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.01
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.95
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.95
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.85
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.78
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.76
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.67
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.66
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.66
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.63
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.53
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.39
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.35
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.35
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.27
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.25
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.22
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.22
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.2
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.2
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.19
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.18
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.18
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.07
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.07
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.84
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.81
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.73
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.71
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.67
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.65
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.58
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.48
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.46
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.42
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.27
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.18
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.16
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.0
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.99
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.98
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.76
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.64
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.57
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.55
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.48
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.31
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.03
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.97
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.73
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	88.67
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.63
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.45
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	88.38
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.27
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.04
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	87.63
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	87.59
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.3
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	87.22
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.15
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.47
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.33
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.17
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	85.97
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.54
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	85.12
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.03
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.9
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.87
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.06
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	83.04
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	82.82
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.03
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.93
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	81.86
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	80.95
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	80.93
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	80.86
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	80.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	80.68

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.6e-09  Score=91.56  Aligned_cols=42  Identities=19%  Similarity=0.423  Sum_probs=38.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      |++|+|.|+|||||||+|..||++||+.++..+|.+|+.+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~   42 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN   42 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHh
Confidence            899999999999999999999999999999888999987643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.94  E-value=1.5e-08  Score=89.45  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.+|.+|+|.|+|||||||+|..||+++|+.++..+|.+|+.+..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~   47 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQS   47 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhh
Confidence            457999999999999999999999999999998777888876543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.86  E-value=8.6e-09  Score=91.04  Aligned_cols=43  Identities=19%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      .|+.|+|.|+|||||||+|..|++++|+.+|..+|.+++.+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~   44 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAA   44 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhc
Confidence            5899999999999999999999999999998667788876543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.85  E-value=1.1e-09  Score=92.25  Aligned_cols=84  Identities=21%  Similarity=0.356  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAG  240 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~  240 (473)
                      .+|+|+|+|||||||+|+.|+++++..+++..|.+++.+....   .   ..+    ...+..        ......+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~---~---~~~----~~~~~~--------~~~~~~~~~   64 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGY---R---PPW----ESDELL--------ALTWKNITD   64 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTC---C---CGG----GCHHHH--------HHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccc---c---chh----HHHHHH--------HHHHHHHHH
Confidence            5899999999999999999999999998888999886543311   0   011    111111        111223445


Q ss_pred             HHHHHHhCCCcEEEEcccCCcc
Q 011994          241 DLKKAMKDGKPIIIEGIHLDPS  262 (473)
Q Consensus       241 ~IekaL~eG~sVIIEGvhL~Pe  262 (473)
                      .+...+..+..+|++++.....
T Consensus        65 ~~~~~~~~~~~~iid~~~~~~~   86 (176)
T d2bdta1          65 LTVNFLLAQNDVVLDYIAFPDE   86 (176)
T ss_dssp             HHHHHHHTTCEEEEESCCCHHH
T ss_pred             HHHHHHhcCCCcccccccccHH
Confidence            5667889999999998765433

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.85  E-value=9.2e-09  Score=87.60  Aligned_cols=83  Identities=25%  Similarity=0.396  Sum_probs=53.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE-cchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL-QTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL  238 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi-~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL  238 (473)
                      +.+|+|.|+|||||||+|+.|++++|++++. ..|.++..+.....      ..|...  ..+..        ......+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~------~~~~~~--~~~~~--------~~~~~~~   67 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRI------DPWLPQ--SHQQN--------RMIMQIA   67 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCC------CTTSSS--HHHHH--------HHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCc------ccccch--hhhHH--------HHHHHHH
Confidence            5699999999999999999999999999874 56888775433211      111111  01111        1112233


Q ss_pred             HHHHHHHHhCCCcEEEEccc
Q 011994          239 AGDLKKAMKDGKPIIIEGIH  258 (473)
Q Consensus       239 ~~~IekaL~eG~sVIIEGvh  258 (473)
                      ...+...+..+..+|+++..
T Consensus        68 ~~~~~~~~~~~~~vi~~~~~   87 (176)
T d1zp6a1          68 ADVAGRYAKEGYFVILDGVV   87 (176)
T ss_dssp             HHHHHHHHHTSCEEEECSCC
T ss_pred             HHHHHHHHhcCCCeEecccc
Confidence            44556677889999998754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.80  E-value=2.7e-08  Score=87.62  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|+|.|+|||||||+|..||+++|+.+|..+|.+|+....
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~   44 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVAS   44 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc
Confidence            45557899999999999999999999998778999986543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=4e-09  Score=93.85  Aligned_cols=68  Identities=21%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      ..|.+|+++|+|||||||+|+.|+..+|+.+| +.|.++..                                     ..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i-~~D~~~~~-------------------------------------~~   53 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV-NRDTLGSW-------------------------------------QR   53 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEE-EHHHHCSH-------------------------------------HH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEE-chHHHHHH-------------------------------------HH
Confidence            46899999999999999999999999998875 56654311                                     01


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      +...++.+|.+|..||+|+++..+..
T Consensus        54 ~~~~~~~~l~~g~~vIiD~t~~~~~~   79 (172)
T d1yj5a2          54 CVSSCQAALRQGKRVVIDNTNPDVPS   79 (172)
T ss_dssp             HHHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred             HHHHHHHHHHCCCCceeeCcCCCHHH
Confidence            23455668899999999999987655

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=7.7e-08  Score=81.76  Aligned_cols=37  Identities=22%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV  195 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i  195 (473)
                      ..+.+|+|+|+|||||||+|+.|++++|+.++ .+|.+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~-~~d~~   40 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL-DGDFL   40 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEE-EGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCee-chhhh
Confidence            45789999999999999999999999999986 45544

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=3.4e-08  Score=87.65  Aligned_cols=44  Identities=18%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      ++|.+|+|.|+|||||||+|..||+++|+.++..+|.+|+.+..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~   49 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSS   49 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHH
Confidence            45679999999999999999999999999998788899987654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.59  E-value=7.3e-08  Score=80.77  Aligned_cols=41  Identities=24%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRT  201 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~  201 (473)
                      ..+|+|+|+|||||||+|+.|+... |+.+ +..|.++..+..
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~-~~~d~~~~~~~~   43 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMA   43 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEE-ECHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEE-echHHHHHHHhc
Confidence            3588999999999999999997665 5554 577777765543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=4.9e-08  Score=85.49  Aligned_cols=42  Identities=24%  Similarity=0.412  Sum_probs=35.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHHHHhh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYELLRT  201 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~~Lr~  201 (473)
                      |.+|+++|.|||||||+|++|++.++   .. .++..|.+|..+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~   47 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVK   47 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhcc
Confidence            89999999999999999999999885   32 34577988887654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=9.5e-08  Score=84.43  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=36.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      ...+|+|.|+|||||||+|..||++||+.++..+|.+|+.+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~   48 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQG   48 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhh
Confidence            345788889999999999999999999999877789887654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.55  E-value=8e-08  Score=81.66  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      +.+|+.|+|+|+|||||||+|..||++|+...++.+|.+...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~   43 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE   43 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence            457889999999999999999999999986666677666654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.55  E-value=9.7e-08  Score=83.59  Aligned_cols=41  Identities=22%  Similarity=0.417  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      |.|+|.|+|||||||+|..||++||+.++..+|.+|+....
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~   41 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQE   41 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhc
Confidence            46899999999999999999999999998778988876543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.54  E-value=1.1e-07  Score=85.11  Aligned_cols=43  Identities=16%  Similarity=0.325  Sum_probs=37.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.+.|+|.|+|||||||+|..||+++|+.++..+|.+|+.+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~   47 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLR   47 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHT
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHh
Confidence            4567778899999999999999999999998778999987643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.6e-08  Score=87.10  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +.||.|.|||||||+|+|+.||++||++++..+|.+|+.+.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            44899999999999999999999999999888899998653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.49  E-value=2.1e-07  Score=78.43  Aligned_cols=96  Identities=22%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE-cchhHHHHHhhCCCCCCCCCcccc-ccccChHHHHHHHHhcchhhHhH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL-QTDMVYELLRTSTDAPLSSSPVWA-RNFSSSEELVTEFVRECRIVRKG  237 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi-~tD~ir~~Lr~~~s~pL~~~~~W~-~~y~s~EelI~gf~~q~~~V~eg  237 (473)
                      +.+|+|+|+|||||||+|+.|+++||.+.+. ..|.++..+............... .........        .++...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~   74 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEF--------RALEGA   74 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHH--------HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHH--------HHHHHH
Confidence            4689999999999999999999999988653 457776653221100000000000 000000000        122233


Q ss_pred             HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          238 LAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       238 L~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                      +...+......+..+|+++..+.+..
T Consensus        75 ~~~~~~~~~~~~~~~i~~~~~~~~~~  100 (178)
T d1qhxa_          75 WAEGVVAMARAGARIIIDDVFLGGAA  100 (178)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCTTTHH
T ss_pred             HHHHHHHHHhhccceEEeeeecchHH
Confidence            44445556678888898887766643

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=1.7e-07  Score=81.78  Aligned_cols=41  Identities=24%  Similarity=0.477  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      +.|+|.|+|||||||+|..||+++|+.+|..+|.+++.+..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~   41 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEE   41 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhh
Confidence            46899999999999999999999999998777888876543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.46  E-value=3.7e-08  Score=83.28  Aligned_cols=36  Identities=36%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      .|+|+|+|||||||+|+.||++||++++..+|.+++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~   41 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE   41 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHH
Confidence            577999999999999999999999999866666665

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.45  E-value=4.8e-07  Score=81.99  Aligned_cols=67  Identities=13%  Similarity=0.284  Sum_probs=48.1

Q ss_pred             cccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHH
Q 011994          119 LLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYE  197 (473)
Q Consensus       119 v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~  197 (473)
                      +.+.+..++++.+...+..            +.........|..||+.|||||||||+|+.||..++..++ +.+|.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_           3 IVNFTDKQFENRLNDNLEE------------LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             TTCCCHHHHHHHHHHHHHH------------HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CcccChHHHHHHHHHHHHH------------HHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            4456666777666665533            1222234567999999999999999999999999976543 46777765

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.42  E-value=7.1e-08  Score=86.03  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL  199 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L  199 (473)
                      ++++|.|.|||||||||+|+.||++||++++..+|++|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            35788999999999999999999999999998889999754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7e-08  Score=83.53  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ++++|+|+|+|||||||+|+.||++|+..++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~   48 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI   48 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999976654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=9.6e-08  Score=78.82  Aligned_cols=35  Identities=37%  Similarity=0.413  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .|+|.|+|||||||+|+.||++||++++...+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~   38 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE   38 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHH
Confidence            47888999999999999999999999874444333

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=1.2e-07  Score=81.92  Aligned_cols=40  Identities=20%  Similarity=0.418  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      |.|+|.|+|||||||+|..||+++|+.++..+|.+++...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~   40 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMK   40 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhc
Confidence            4689999999999999999999999999877888887543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=2.5e-07  Score=81.07  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      +.|+|.|+|||||||+|+.||+++|+.++..+|.+++...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~   42 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIA   42 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccc
Confidence            4577889999999999999999999999877788887643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=1.6e-07  Score=81.19  Aligned_cols=38  Identities=32%  Similarity=0.370  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      |.|||+ |+|||||||+|+.||++||++++..++.+.+.
T Consensus         2 p~Ivli-G~~G~GKSTig~~La~~l~~~fiD~D~~ie~~   39 (165)
T d2iyva1           2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDTDVAIEQR   39 (165)
T ss_dssp             CSEEEE-CSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHHhCCCeEeeccchhhh
Confidence            666666 99999999999999999999987544445443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.30  E-value=1.1e-06  Score=76.22  Aligned_cols=36  Identities=31%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      |+|.|+|||||||+|+.||++||++++..++.+++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~   38 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK   38 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhH
Confidence            677799999999999999999999998544455443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.8e-07  Score=80.23  Aligned_cols=41  Identities=22%  Similarity=0.471  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~  201 (473)
                      |.|+|.|+|||||||+|..||+++|+.++..+|.+++....
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~   41 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKS   41 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhcc
Confidence            46889999999999999999999999998778888887654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.28  E-value=8.1e-07  Score=77.05  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE  197 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~  197 (473)
                      |+|+|+|||||||+|+.||++||++++..++.+++
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~   39 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH   39 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhh
Confidence            56779999999999999999999998754444444

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.27  E-value=9.6e-07  Score=80.67  Aligned_cols=87  Identities=23%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc----CCCeE-EcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL----NLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRE  230 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L----g~~~V-i~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q  230 (473)
                      ...++++|+|+|.|||||||+|..|+.+|    ++..+ +.+|.+|+.+...    +.        | +.++....+   
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~----l~--------y-s~~~r~~~~---   83 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKD----LG--------F-SEADRNENI---   83 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTT----CC--------S-SHHHHHHHH---
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCC----CC--------C-ChhHHHHHH---
Confidence            34678999999999999999999999876    55544 5789998765321    10        1 111111111   


Q ss_pred             chhhHhHHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994          231 CRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSI  263 (473)
Q Consensus       231 ~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel  263 (473)
                           ..+...+......|..+|+..+...+..
T Consensus        84 -----~r~~~~a~~~~~~g~~viv~~i~~~~~~  111 (208)
T d1m7ga_          84 -----RRIAEVAKLFADSNSIAITSFISPYRKD  111 (208)
T ss_dssp             -----HHHHHHHHHHHHTTCEEEEECCCCCHHH
T ss_pred             -----HHHHHHHHHHhccCCceeeecccccHHH
Confidence                 1233444456678999999888877654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.19  E-value=3.4e-07  Score=77.05  Aligned_cols=29  Identities=31%  Similarity=0.390  Sum_probs=26.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..++++|+|+|+|||||||+|+.||++|+
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35678999999999999999999999995

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.17  E-value=5.1e-07  Score=75.86  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM  194 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~  194 (473)
                      .+..|+|.|+|||||||+|+.||+++|.+++ ..|.
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i-~~~~   40 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSA-WEYG   40 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEE-CCTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeE-eeeh
Confidence            3568999999999999999999999999876 4443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.95  E-value=2.2e-05  Score=65.93  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC---C--eEEcchhHHHHHhh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL---P--NVLQTDMVYELLRT  201 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~---~--~Vi~tD~ir~~Lr~  201 (473)
                      .+|+|.|+|||||||+++.|+++|+.   .  .+..+|..+.....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~   47 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKE   47 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Confidence            48999999999999999999998843   2  23345666665543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=0.00024  Score=62.82  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      ..|.|-|+.||||||++..|+++|   |+..+.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~   35 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV   35 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            468899999999999999999887   666543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=9e-06  Score=71.09  Aligned_cols=39  Identities=26%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      .|++|-|+|.+||||||+|..|. .+|++++.+++..+..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~   40 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARA   40 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHh
Confidence            59999999999999999999995 6999987544444443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.73  E-value=1.3e-05  Score=76.91  Aligned_cols=32  Identities=41%  Similarity=0.543  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ..|..|||+||||||||.+|+.||+.++.+++
T Consensus        47 ~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~   78 (309)
T d1ofha_          47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFI   78 (309)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHhhccccchh
Confidence            35678899999999999999999999998765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=2e-05  Score=70.86  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+..+||+||||+||||+|+.||..++..++.
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            34468899999999999999999999988763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=8.8e-06  Score=69.71  Aligned_cols=30  Identities=37%  Similarity=0.432  Sum_probs=26.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ....|++|.|+|++||||||+|+.|+..++
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455699999999999999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.5e-05  Score=70.79  Aligned_cols=28  Identities=32%  Similarity=0.520  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .|.+|.|+|++||||||+|+.|+..||.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            3899999999999999999999999974

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=4.4e-05  Score=77.33  Aligned_cols=75  Identities=27%  Similarity=0.336  Sum_probs=49.3

Q ss_pred             HHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          108 LELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       108 ~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .+|+..|-.   ..|.|++-+..+.-.+.++      .+|..+.......-.|..||+.||+|||||.||+.||+.++.|
T Consensus         6 ~~i~~~Ld~---yVvGQ~~AKk~lsvav~nh------yrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VP   76 (443)
T d1g41a_           6 REIVSELDQ---HIIGQADAKRAVAIALRNR------WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP   76 (443)
T ss_dssp             HHHHHHHHT---TCCSCHHHHHHHHHHHHHH------HHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcC---cccCcHHHHHHHHHHHHHH------HHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            345556542   3666777666665555442      1111111112222347789999999999999999999999999


Q ss_pred             eEEc
Q 011994          188 NVLQ  191 (473)
Q Consensus       188 ~Vi~  191 (473)
                      ++..
T Consensus        77 Fv~~   80 (443)
T d1g41a_          77 FIKV   80 (443)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00038  Score=61.43  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          163 ILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      |+|.||+||||||++..|++.++-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCc
Confidence            6799999999999999999987643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.52  E-value=2.1e-05  Score=66.52  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC---CCe--EEcchhHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN---LPN--VLQTDMVYELLR  200 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg---~~~--Vi~tD~ir~~Lr  200 (473)
                      +|+|.|++||||||+++.|+.+|+   +.+  +..+|..+....
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~   46 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATAL   46 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHH
Confidence            789999999999999999999985   333  223577766543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=2.3e-05  Score=72.53  Aligned_cols=42  Identities=26%  Similarity=0.364  Sum_probs=34.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL  198 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~  198 (473)
                      ..+|.+|+++|++|+||||++.+||.++   |.+ .++.+|++|-.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g   53 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA   53 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccc
Confidence            4679999999999999999999999877   443 33478888854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.44  E-value=4.1e-05  Score=68.91  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .|..+||.||||+||||+|+.||..+++.++.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            45578899999999999999999999988654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4.4e-05  Score=68.71  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+..++|.||||+||||+|+.||+.++..++
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            4458999999999999999999999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=3.8e-05  Score=71.00  Aligned_cols=42  Identities=29%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL  198 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~  198 (473)
                      ...|.+|+++|++|+||||++.+||.++   |.+ .++.+|++|-.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g   51 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA   51 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccccc
Confidence            3569999999999999999999999877   443 33578888753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.41  E-value=9.5e-05  Score=68.69  Aligned_cols=30  Identities=27%  Similarity=0.522  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      |.-|||.||||||||++|+.||..+|++++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~   69 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFI   69 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccc
Confidence            456999999999999999999999999876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=6e-05  Score=62.90  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPN  188 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~  188 (473)
                      +|+|+|++|||||||+..|+.+|   |+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v   33 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRP   33 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            79999999999999999999876   5554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.38  E-value=3.4e-05  Score=71.20  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL  198 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~  198 (473)
                      .+.|.+|+|+|++|+||||++.+||.++   |.+ .++.+|++|-.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g   54 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPA   54 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccc
Confidence            3579999999999999999999999887   333 33477887753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.34  E-value=4.5e-05  Score=70.15  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYE  197 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~  197 (473)
                      .+|.+|+++|++|+||||++.+||.++   |.+. ++..|++|-
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   47 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA   47 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccc
Confidence            467899999999999999999999877   4332 346787763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.33  E-value=3.4e-05  Score=67.14  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      +..+|++|.|.|..||||||+++.|++.++...+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            5678999999999999999999999999976544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=8.8e-05  Score=66.19  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ..+|-|+|.+||||||+|..|. .+|++++.+++..++.
T Consensus         2 ~~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l   39 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREV   39 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHH
Confidence            4689999999999999999996 6899986444444443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00033  Score=63.10  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      +.++|.|.|+.||||||++..|++.|   |+.++.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            45789999999999999999999987   676654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=9.5e-05  Score=69.44  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=29.9

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.-||+.||||||||++|+.||..+|++.+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            3457889999999999999999999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.24  E-value=0.0001  Score=68.65  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=30.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.|.-||+.|+||||||++|+.||..+|++++.
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~   72 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT   72 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCEEE
Confidence            3457789999999999999999999999998763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=5.9e-05  Score=62.81  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++|+|+|+||+||||++..++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            368999999999999999999887

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00025  Score=68.69  Aligned_cols=40  Identities=38%  Similarity=0.550  Sum_probs=31.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcC-----CC-eEEcchhHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLN-----LP-NVLQTDMVY  196 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~-~Vi~tD~ir  196 (473)
                      .+.|.+|.|+|++||||||+|+.|+..|.     .. .++++|.+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            46799999999999999999999999873     22 234666653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00011  Score=65.74  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=30.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL  198 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~  198 (473)
                      ++.+|.|+|.+||||||+|..|. .+|++++ ..|.+.+.
T Consensus         2 mk~iIgitG~igSGKStv~~~l~-~~G~~vi-daD~i~~~   39 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA-DLGINVI-DADIIARQ   39 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HTTCEEE-EHHHHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH-HCCCcEE-EchHHHHH
Confidence            34689999999999999999986 7899876 55555544

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.17  E-value=0.00011  Score=66.09  Aligned_cols=40  Identities=18%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR  200 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr  200 (473)
                      .+|.|+|..||||||+|..|+.++|+.++..+|.+++.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l~   41 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHHH
Confidence            3799999999999999999999999987644788877653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00036  Score=64.72  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.-||+.||||||||++++.+|..++.+++.
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~   68 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL   68 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCCeEEE
Confidence            457789999999999999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.15  E-value=9.6e-05  Score=67.75  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYEL  198 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~  198 (473)
                      +.+.+|+++|++|+||||++.+||.++   |... ++..|++|-.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   52 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA   52 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccch
Confidence            346799999999999999999999887   4443 3467887753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.12  E-value=0.00011  Score=62.25  Aligned_cols=26  Identities=31%  Similarity=0.624  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +.|+|+|+||||||||++.|+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            35899999999999999999998864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00028  Score=67.74  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=30.7

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc------CCCe-EEcchhH
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL------NLPN-VLQTDMV  195 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L------g~~~-Vi~tD~i  195 (473)
                      ..++|.+|-|+|++||||||++..|...|      +... +++.|.+
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            45579999999999999999999887665      2232 3466766

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.09  E-value=0.00072  Score=66.42  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+.|-.|||+||+|||||-+|+.||+.++.+++
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            345668999999999999999999999987765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00043  Score=66.35  Aligned_cols=34  Identities=29%  Similarity=0.573  Sum_probs=29.5

Q ss_pred             ccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          156 HQRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       156 ~~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ...+|. +++|+||+|+|||.+|+.||+.++.+++
T Consensus        47 ~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          47 HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCceEEEEECCCcchhHHHHHHHHhhccCCee
Confidence            345666 8999999999999999999999998765

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.02  E-value=0.0002  Score=63.97  Aligned_cols=26  Identities=38%  Similarity=0.414  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +..++|+|+||+||||+|+.||+.++
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            33688999999999999999999874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00022  Score=66.70  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      ..|.-||+.|+||||||++|+.||..+|++++.
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~   71 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS   71 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEE
Confidence            346789999999999999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.90  E-value=0.00027  Score=62.58  Aligned_cols=28  Identities=14%  Similarity=0.069  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ..|..++|.|+||+||||+++.|++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4577899999999999999999999884

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00034  Score=62.35  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .++|.||||+||||+|+.||+.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            47889999999999999999988654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.79  E-value=0.00048  Score=67.76  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=29.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      ...++..++|.||||+|||++|..||..+|.+++
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i  183 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKAL  183 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            3445569999999999999999999999998875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.0038  Score=55.91  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +...|.|-|+-||||||+++.|+++|...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00063  Score=60.10  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++|.|+||+||||+++.|++.+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            347899999999999999999986

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.00067  Score=60.06  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .++|.|++|+||||+|..||+.++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhc
Confidence            4789999999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.59  E-value=0.00055  Score=58.21  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPN  188 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~  188 (473)
                      +|.|+|.+|||||||+..|+.+|   |+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v   32 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV   32 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            78899999999999999999877   5543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.54  E-value=0.00035  Score=62.20  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +++|+|+||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            56778999999999999999987

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.54  E-value=0.00067  Score=58.68  Aligned_cols=25  Identities=36%  Similarity=0.620  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+|+|+|||||||||++..|.+++.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4789999999999999999998874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.48  E-value=0.001  Score=57.76  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      ++|.|.|..||||||++..|+++|   |+.++.
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~   33 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            579999999999999999999987   666543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.47  E-value=0.0035  Score=58.34  Aligned_cols=66  Identities=24%  Similarity=0.343  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEE
Q 011994           84 FSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVI  163 (473)
Q Consensus        84 FSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iI  163 (473)
                      ||+..++|-|...++|.                 ...-+.++.-.+.+.+.|.+.                 ......+|
T Consensus         2 ~~~~~~~~~l~~~~~p~-----------------~~~~~gR~~~~~~i~~~L~~~-----------------~~~~~~~v   47 (277)
T d2a5yb3           2 FSRQMLDRKLLLGNVPK-----------------QMTCYIREYHVDRVIKKLDEM-----------------CDLDSFFL   47 (277)
T ss_dssp             CCHHHHHHHHHHTTCBC-----------------CCCSCCCHHHHHHHHHHHHHH-----------------TTSSSEEE
T ss_pred             cchhhhcccccccCCCC-----------------CCceeCcHHHHHHHHHHHHhc-----------------cCCCceEE
Confidence            78889999998888872                 112233443333333433221                 11123589


Q ss_pred             EEEcCCCCcHHHHHHHHHHh
Q 011994          164 LVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       164 lI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|.|+.|+||||+|..+.+.
T Consensus        48 ~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          48 FLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEECSTTSSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00061  Score=60.74  Aligned_cols=26  Identities=23%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+..++|.|++|+||||+|+.+|+.+
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34468899999999999999999987

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.28  E-value=0.00055  Score=65.82  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVY  196 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir  196 (473)
                      +++.||.|+|.+||||||+++.|+..+   |+. .++..|.++
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            345589999999999999999998877   454 355677663

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0018  Score=57.90  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=27.4

Q ss_pred             hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       154 ~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +...+.|..++|.|++|+||||+|..+|+.+.
T Consensus        18 ~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          18 YQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            33455688899999999999999999999874

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.22  E-value=0.0013  Score=57.77  Aligned_cols=24  Identities=29%  Similarity=0.603  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +||+|.|++|+|||||...|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            589999999999999999998766

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.002  Score=57.21  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      |..|.|-|.-||||||+++.|++.|+-..+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            789999999999999999999999987665

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0021  Score=56.03  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhcC
Q 011994          163 ILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      |+|.||+||||+|++..|++.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            68999999999999999999875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0023  Score=57.81  Aligned_cols=31  Identities=42%  Similarity=0.510  Sum_probs=26.4

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      .+.|..+||.|++|+||||+|+.++..++..
T Consensus        31 ~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          31 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             TCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CCCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            3447789999999999999999999988643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.00  E-value=0.0035  Score=60.03  Aligned_cols=29  Identities=34%  Similarity=0.538  Sum_probs=25.5

Q ss_pred             ccCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPL-VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~-iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...+|. +++++|++|+|||.+|+.||+.+
T Consensus        48 ~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          48 DPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            345676 78999999999999999999987

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.91  E-value=0.0025  Score=55.96  Aligned_cols=29  Identities=38%  Similarity=0.466  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNV  189 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V  189 (473)
                      .+|+|.|++|+|||+++..++..++..+.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            47899999999999999999999986643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.88  E-value=0.0017  Score=58.23  Aligned_cols=34  Identities=38%  Similarity=0.451  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .-|+|.|.||+||||+|..|..+ |... +++|.+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~-g~~l-v~DD~~~   48 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR-GHRL-IADDRVD   48 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT-TCEE-EEEEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeE-EecCeEE
Confidence            46899999999999999999875 8875 4777553

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0026  Score=52.92  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++|+|+||+||||+|..||...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            499999999999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.83  E-value=0.012  Score=52.95  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHhc
Q 011994          163 ILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++|.|++|+|||.|+..++..+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999999877

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.75  E-value=0.0017  Score=58.30  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .-|+|+|++|+||||+|..|.. .|... +++|.+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~-~G~~l-vaDD~v~   49 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN-KNHLF-VGDDAIE   49 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT-TTCEE-EEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH-cCCce-ecCCeEE
Confidence            3589999999999999999976 48775 5888653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.75  E-value=0.01  Score=57.03  Aligned_cols=29  Identities=28%  Similarity=0.327  Sum_probs=25.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.++..+|-|+|+||+|||||...|+.++
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0034  Score=54.96  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|+|+||+|+||+||...|.++.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            57889999999999999999776

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.52  E-value=0.0028  Score=56.28  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY  196 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir  196 (473)
                      .-|+|.|.+|+||||+|..|..+ |... +++|.+.
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~-g~~l-i~DD~~~   49 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR-GHRL-VADDNVE   49 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEE-EESSEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeE-EeCCeEE
Confidence            36899999999999999999876 8775 5777664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.011  Score=57.11  Aligned_cols=30  Identities=30%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          155 HHQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.++..+|-|+|+||+|||||...|+..+
T Consensus        49 ~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            356778999999999999999999998766

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.50  E-value=0.0031  Score=61.23  Aligned_cols=28  Identities=21%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN--LPNV  189 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg--~~~V  189 (473)
                      ++|+.|+||||||.+|+.||..+|  .+++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~  154 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYA  154 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCE
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeE
Confidence            566789999999999999999986  4443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0067  Score=54.90  Aligned_cols=37  Identities=35%  Similarity=0.513  Sum_probs=30.2

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cch
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTD  193 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD  193 (473)
                      +.+|++|++.|--|+||||+|..||..|   |.++++ ..|
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4568999999999999999999998877   666543 455

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.004  Score=55.89  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .+|+|+||+|+|||||...|.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4899999999999999999998864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.29  E-value=0.0065  Score=50.34  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=22.0

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .++...|+|.|.+|+|||||..+|..
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            45567899999999999999998853

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.14  E-value=0.0064  Score=49.38  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+|+|.||||||||..+|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0043  Score=54.51  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=45.1

Q ss_pred             EEEEEecchhhHHHHHHhhhhhcccccccccchHHHHhhHHHHH-HHHhhhc-------cCCceEeeecCCCccchHHHH
Q 011994          376 PIVLKMADFDHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQ-NYLCSFK-------SQGVTVVNVSATTFPQTLDWL  447 (473)
Q Consensus       376 p~vl~~~~~dh~~lle~~~~~ra~~~~~~~~~~~~~i~nl~~IQ-~yLc~~~-------~q~~~vv~i~~~~~~~tld~l  447 (473)
                      =|.|.++++..+    +++.-|....  -......++.+|+.+- +||-...       .+...++.|+++   ++++-+
T Consensus       156 ~i~Ld~~pe~~~----~Ri~~r~~~~--e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~---~~ie~v  226 (241)
T d1p5zb_         156 IIYLQATPETCL----HRIYLRGRNE--EQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN---EDFKDK  226 (241)
T ss_dssp             EEEEECCHHHHH----HHHHHHCCGG--GTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECC---SCHHHH
T ss_pred             eeeeccCHHHHH----HHHHhhcchh--hhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECC---CCHHHH
Confidence            366777777665    3344343221  1112356777776553 4443321       123467788864   699999


Q ss_pred             HHHHHHHHHHhhh
Q 011994          448 HGYLLQCIEKGIS  460 (473)
Q Consensus       448 H~~ll~~i~~~~~  460 (473)
                      |.-+++.|+.-+.
T Consensus       227 ~~~i~~~i~~~l~  239 (241)
T d1p5zb_         227 YESLVEKVKEFLS  239 (241)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.08  E-value=0.0081  Score=48.93  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.+.|+|+|.+|||||||..++..
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            346799999999999999998865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.045  Score=50.37  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      ...+|+|+||+|||||...|.....+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~  122 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLR  122 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhh
Confidence            367899999999999999996555443

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.0051  Score=53.23  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .+++|.|+||+||||++..++..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            49999999999999999998754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.79  E-value=0.0079  Score=52.75  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++|.|+||+||||+|..++...
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            599999999999999999998654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.0081  Score=53.61  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          149 RMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       149 ~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .++.++.+.+.+..++|.|++|+||||+|..|+..+
T Consensus         4 ~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2           4 ETLKRIIEKSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            355666677788999999999999999999999866

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.71  E-value=0.014  Score=51.25  Aligned_cols=31  Identities=16%  Similarity=0.333  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN  188 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~  188 (473)
                      +...+|++.|.=|+||||+++.+++.||+.-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~   61 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG   61 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccccc
Confidence            4567999999999999999999999999863

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.61  E-value=0.0046  Score=58.31  Aligned_cols=24  Identities=42%  Similarity=0.430  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .|||.|+||+||||+|+.|+.-|.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCC
Confidence            589999999999999999998774

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.53  E-value=0.01  Score=51.02  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -.+++|.|+||+|||+++..+|...
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999999755

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.01  Score=51.67  Aligned_cols=24  Identities=17%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          160 PLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -.+++|+|+||+|||++|..++..
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            359999999999999999999863

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.021  Score=51.56  Aligned_cols=24  Identities=38%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..+++.|+||+|||+++..||.++
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            367999999999999999999876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.26  E-value=0.012  Score=51.80  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +..+++|.|+||+|||+++..+|...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34599999999999999999999876

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.023  Score=53.52  Aligned_cols=24  Identities=42%  Similarity=0.493  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ..++++|+||+|||+++..||.++
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            467899999999999999999876

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.015  Score=46.73  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+|.|.||+|||||..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.021  Score=48.69  Aligned_cols=29  Identities=28%  Similarity=0.251  Sum_probs=24.6

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCGTA-CVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G~~-GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      .++|+|.. |+||||++.-||..|   |.+++.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~   35 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            68999995 999999999999877   777543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.02  E-value=0.017  Score=48.05  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.|+|+|.+|||||||..+|..
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            6799999999999999998864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.98  E-value=0.017  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.|+|.|.+|+|||||..+|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            5689999999999999998853

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.80  E-value=0.017  Score=49.01  Aligned_cols=29  Identities=31%  Similarity=0.409  Sum_probs=23.4

Q ss_pred             HhhccCCCeEEEEEcCCCCcHHHHHHHHH
Q 011994          153 RFHHQRVPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      .+...++-+-|++.|.+|+|||||..+|.
T Consensus        10 ~l~~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          10 KLWGSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             GGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             HHhCCCceEEEEEECCCCCCHHHHHHHHh
Confidence            33445667889999999999999998763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.78  E-value=0.018  Score=49.39  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +..+++|+|.||+|||++|..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            345999999999999999987764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.66  E-value=0.021  Score=47.77  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHH
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      +.+.+.|++.|.+|+|||||..+|.
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHh
Confidence            3456889999999999999999884

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.019  Score=53.09  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            489999999999999999887544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.47  E-value=0.02  Score=53.22  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            389999999999999999997644

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.44  E-value=0.017  Score=53.31  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+.-+
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCcchhhHhccCCC
Confidence            389999999999999999887544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.056  Score=48.56  Aligned_cols=37  Identities=32%  Similarity=0.467  Sum_probs=28.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cch
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTD  193 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD  193 (473)
                      .....||+++|--|+||||++..||..|   |.++++ -.|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3445799999999999999988888766   666543 345

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.29  E-value=0.025  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +-|++.|.+|+|||||..+|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.018  Score=53.31  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -.|.|+|++|||||||++.|..-+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            379999999999999999997655

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.23  E-value=0.018  Score=53.61  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|+|++||||||+++.|+.-+
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            489999999999999999997544

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.18  E-value=0.017  Score=51.75  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+..+
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            478999999999999999997655

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.11  E-value=0.02  Score=52.84  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|+|++||||||+.+.|+.-+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            489999999999999999997654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.03  E-value=0.025  Score=52.59  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ++.|.|++||||||+.+.|+.-+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            56688999999999999998755

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.025  Score=50.75  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+.+|+|++|+||||++..||..+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            378899999999999999998753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.028  Score=47.92  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+|.|.||+|||||..+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5788999999999999999764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.99  E-value=0.018  Score=53.13  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            389999999999999999998655

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.98  E-value=0.028  Score=47.06  Aligned_cols=21  Identities=38%  Similarity=0.653  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .|.|+|.+|+|||||..+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.94  E-value=0.024  Score=48.53  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .|.|+|.||+|||||...|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            588999999999999999963

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.031  Score=47.48  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             CCceEeeecCC---CccchHHHHHHHHHHHHHHhh
Q 011994          428 QGVTVVNVSAT---TFPQTLDWLHGYLLQCIEKGI  459 (473)
Q Consensus       428 q~~~vv~i~~~---~~~~tld~lH~~ll~~i~~~~  459 (473)
                      .|+..+++||.   ++.+.++||...+++.+++.+
T Consensus       151 ~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~~~  185 (186)
T d2f7sa1         151 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV  185 (186)
T ss_dssp             TTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            35678888875   789999999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.026  Score=52.42  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|+|++|||||||++.|..-+
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            489999999999999999997655

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.86  E-value=0.029  Score=50.59  Aligned_cols=30  Identities=30%  Similarity=0.213  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc----CCCeE
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL----NLPNV  189 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L----g~~~V  189 (473)
                      --+++|+|.||+||||++..|+..+    |.+++
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~   68 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG   68 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhccccee
Confidence            3589999999999999999998643    56544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.84  E-value=0.025  Score=52.41  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      ....+|+|+||+|||||...|...+.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             cceEEEECCCCccHHHHHHhhccHhH
Confidence            34667899999999999999965443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.022  Score=52.90  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+--+
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            488999999999999999997544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.78  E-value=0.026  Score=47.27  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+|+|.||+|||||...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            379999999999999999964

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.78  E-value=0.031  Score=46.95  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|+++|.+|+|||||..+|...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            5899999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.77  E-value=0.025  Score=53.34  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+..+
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            489999999999999999998655

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.74  E-value=0.029  Score=52.03  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            388999999999999999997655

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.69  E-value=0.037  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +-|+|.|++|+|||||..+|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999998653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.033  Score=46.91  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=24.5

Q ss_pred             CCceEeeecC---CCccchHHHHHHHHHHHHHHhh
Q 011994          428 QGVTVVNVSA---TTFPQTLDWLHGYLLQCIEKGI  459 (473)
Q Consensus       428 q~~~vv~i~~---~~~~~tld~lH~~ll~~i~~~~  459 (473)
                      .++..+++||   .++.+-..+|=..+++.|++|+
T Consensus       138 ~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~~~  172 (173)
T d2a5ja1         138 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL  172 (173)
T ss_dssp             HTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHccC
Confidence            3567888886   4567777888788889888875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.47  E-value=0.028  Score=52.46  Aligned_cols=24  Identities=29%  Similarity=0.226  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+++.|+.-+
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            489999999999999999997533

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.04  Score=45.62  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .-|++.|.+|+|||||..++..
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.29  E-value=0.15  Score=47.41  Aligned_cols=54  Identities=24%  Similarity=0.476  Sum_probs=35.4

Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHhh--ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          131 LFKLMERRGYGEEYISRYRMMTRFH--HQRVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       131 v~~lL~~~~yge~~a~rY~l~~~~~--~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +..+|.-++|.......  .+..+.  +..+-..++|.|++++|||+++..|+.-+|.
T Consensus        75 i~~~l~~q~~~~~~f~~--~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_          75 IYKILELNGYDPQYAAS--VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             HHHHHHHTTCCHHHHHH--HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             HHHHHHHcCcCHHHHHH--HHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            45555556665432111  122222  2244568999999999999999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.035  Score=46.27  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+-|+|.|.+|+|||||..+|..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35688999999999999999865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.043  Score=46.01  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=24.8

Q ss_pred             CCceEeeecC---CCccchHHHHHHHHHHHHHHh
Q 011994          428 QGVTVVNVSA---TTFPQTLDWLHGYLLQCIEKG  458 (473)
Q Consensus       428 q~~~vv~i~~---~~~~~tld~lH~~ll~~i~~~  458 (473)
                      .+++.+++||   .++.+.++||=..||+.|+.|
T Consensus       140 ~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         140 NELMFLETSALTGENVEEAFVQCARKILNKIESG  173 (174)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            4667888885   678999999988899988865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.041  Score=45.95  Aligned_cols=21  Identities=24%  Similarity=0.691  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+|+|.+|+|||||..++..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.041  Score=46.07  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|+|.|.+|+|||||..+|...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999999753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.15  E-value=0.038  Score=46.62  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|.|+|.+|+|||||...|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.043  Score=45.00  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +-|+|.|.+++|||||..+|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999974

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.045  Score=45.56  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|++.|.+|+|||||..+|...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.038  Score=46.96  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +.+-|+|.|.+|+|||||..+|...
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.13  E-value=0.044  Score=47.27  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .|+|.|++|+|||||..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.047  Score=46.26  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+++|.+|||||||...|..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.04  Score=45.85  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .|+|.|.+++|||||..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.07  E-value=0.049  Score=45.46  Aligned_cols=21  Identities=19%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+|.|.+|+|||||..+|..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999999865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.05  Score=45.84  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +-|+|.|.+|+|||||..+|..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.01  E-value=0.023  Score=52.87  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++||||||+.+.|+.-+
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            489999999999999999998644

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.047  Score=45.74  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|+|.|.+|+|||||..+|...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.045  Score=45.63  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|++.|.+|+|||||..+|...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.047  Score=45.48  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|++.|.+|+|||||..+|...
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999999764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.91  E-value=0.057  Score=45.41  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+.|.|+|.+|+|||||..+|..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            46799999999999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.85  E-value=0.038  Score=46.40  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.+-|+++|.+|+|||||..+|..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            457799999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.78  E-value=0.069  Score=52.22  Aligned_cols=25  Identities=44%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      -+|+|+|+.||||||+...+-..++
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4899999999999999999988774

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.76  E-value=0.03  Score=54.14  Aligned_cols=29  Identities=24%  Similarity=0.187  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      ..++.|.|-|+-|+||||+++.|++.++.
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHHhcc
Confidence            34678999999999999999999998853

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.046  Score=45.58  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|++.|.+|+|||||..+|..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.67  E-value=0.04  Score=50.72  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|+||||+.+.|+--+
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            489999999999999999997655

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.05  Score=45.70  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+++|.+|+|||||..+|..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.054  Score=45.66  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|+|.|.+|+|||||..+|...
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.047  Score=45.75  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|+|.|.+|||||||..++...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=0.047  Score=45.54  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .-|+|.|.+|+|||||..+|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999999875

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.39  E-value=0.067  Score=45.16  Aligned_cols=27  Identities=11%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +.-..|++.|.+|+||+|+|..|-..|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999997776

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=0.04  Score=50.28  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -++.|.|++||||||+.+.|+.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            3899999999999999998875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.35  E-value=0.045  Score=50.65  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|.|++|||||||.+.|+-.+
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            488999999999999999997655

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.067  Score=45.09  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.|+++|.+|+|||||..+|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.25  E-value=0.028  Score=52.41  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -++.|+|++||||||+.+.|..-+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            389999999999999999887544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.22  E-value=0.063  Score=52.75  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      .+++.|.||+|||+++..||.++
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHH
Confidence            44777999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.06  Score=45.02  Aligned_cols=21  Identities=19%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+|+|.+|+|||++..++..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.056  Score=44.71  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+|.|.+|+|||||..+|..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.065  Score=44.66  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|+++|.+|+|||+|..++...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.19  E-value=0.047  Score=49.07  Aligned_cols=16  Identities=38%  Similarity=0.407  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHHH
Q 011994          163 ILVCGTACVGKSTIAT  178 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~  178 (473)
                      ++|.|+|||||||++.
T Consensus        17 ~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEECCCTTSCHHHHHH
T ss_pred             EEEEeeCCccHHHHHH
Confidence            5777999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.18  E-value=0.069  Score=45.06  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQL  180 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~L  180 (473)
                      ..-|+|.|.+|+|||||..++
T Consensus         2 ~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            356899999999999999998

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.057  Score=45.28  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|++.|.+|+|||||...+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            478999999999999998854

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.07  E-value=0.048  Score=52.15  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      .|+|+|++||||||+...|...+.
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CEEEEeeccccchHHHHHHhhhcc
Confidence            589999999999999999988774

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.058  Score=44.90  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|++.|.+|+|||||..+|...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.078  Score=44.37  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +-|++.|.+|+|||+|..++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.042  Score=45.35  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 011994          160 PLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      ...|.|.|.|++|||||...|.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999998773

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.71  E-value=0.089  Score=48.04  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      ..++.|++.|.+|+||||+...|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            4568899999999999999998853

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.077  Score=44.62  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|+|.|.+|+|||||..++...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788899999999999988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.65  E-value=0.073  Score=44.69  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+++|.+|+|||||..++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.58  E-value=0.086  Score=43.88  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +-|+|.|.+|+|||+|..++...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            56889999999999999988654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.48  E-value=0.061  Score=49.45  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      -++-|.|++|+|||||.+.|+..+.
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4889999999999999999987653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.07  Score=45.83  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|+|+|.+|+|||||...|..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            488999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.077  Score=44.71  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|++.|.+|+|||||..++..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.18  E-value=0.44  Score=43.47  Aligned_cols=27  Identities=33%  Similarity=0.518  Sum_probs=23.3

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994          157 QRVPLVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      ...+..|+|+|.|.+||||+...|..+
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCceEEEEEecCccchhhhhhhhhcc
Confidence            346788999999999999999999753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.16  E-value=0.046  Score=46.01  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=8.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA  181 (473)
                      -|+|.|.+|||||||..+|.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEECCCCC----------
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999999885

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.00  E-value=0.073  Score=48.46  Aligned_cols=17  Identities=29%  Similarity=0.481  Sum_probs=13.5

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 011994          163 ILVCGTACVGKSTIATQ  179 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~  179 (473)
                      ++|.|+|||||||++-.
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            56779999999987643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.99  E-value=0.057  Score=45.48  Aligned_cols=39  Identities=28%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             HHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHHHH
Q 011994          415 LKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEK  457 (473)
Q Consensus       415 l~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~~  457 (473)
                      ++.+++.|-   ..+..++.|||.+= +-+|-|-..+.++++.
T Consensus       131 ~~~~~~~~~---~~~~~~~~iSA~tg-~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         131 VKALADALA---REGLAVLPVSALTG-AGLPALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHH---TTTSCEEECCTTTC-TTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH---hcCCeEEEEEcCCC-CCHHHHHHHHHHHHhh
Confidence            344555543   25888999999773 5577766666666653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.98  E-value=0.087  Score=46.63  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=22.7

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          159 VP-LVILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       159 ~P-~iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +| +.|.|.|++++|||||..+|-...|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            35 5699999999999999999976554

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.023  Score=46.54  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLN  185 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg  185 (473)
                      +.+|.|++||||||+..+|.--|+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            568899999999999999987664

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.64  E-value=0.089  Score=50.87  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQL  180 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~L  180 (473)
                      +.+|.|+||+||||+...+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            7899999999999988554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.57  E-value=0.031  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|.|.|.|++|||||..+|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.11  Score=44.33  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|+|.|.+|+|||||..+|...
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            46999999999999999998753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.48  E-value=0.072  Score=44.92  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 011994          163 ILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       163 IlI~G~~GsGKSTlA~~LA~  182 (473)
                      |.|.|.|++|||||..+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998853

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.44  E-value=0.14  Score=45.80  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      .|.|.|--|+||||+|.-||..|   |.++++
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVll   34 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEE
Confidence            56778999999999999888776   666543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.094  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +++|+|.-||||||+...|.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            78999999999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.03  E-value=0.12  Score=43.42  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|++.|.+|+|||||..++...
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5788999999999999998753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.97  E-value=0.12  Score=43.81  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHh
Q 011994          162 VILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      -|+|.|.+|+|||+|..++...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999988753

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.97  E-value=0.085  Score=45.58  Aligned_cols=51  Identities=12%  Similarity=0.269  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHH
Q 011994          126 DLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQ  179 (473)
Q Consensus       126 eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~  179 (473)
                      .+-+.+...|.++||.+-+--....+..+...+   .+++++++|+|||++|..
T Consensus         9 ~~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~---~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3           9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGK---NLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHHHHHHHHHHCC---CCCCCCHHHHHHHTTCS---CEEEECSSHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC---CEEEEcCCCCchhHHHHH
Confidence            466666677777665322100112333333322   478999999999988743

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.12  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      -.++.|+|+||+||||++..++...
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHH
Confidence            3699999999999999999988655

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.67  E-value=0.13  Score=45.74  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc
Q 011994          162 VILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +|.|.|.+++|||||...|....
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            58899999999999999986543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.63  E-value=0.11  Score=50.22  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +.|.|-|+-|+||||+++.|++.++..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~~   31 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSRD   31 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----C
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCCC
Confidence            358999999999999999999888643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.45  E-value=0.11  Score=46.17  Aligned_cols=31  Identities=35%  Similarity=0.284  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcc
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNLPNVLQT  192 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~t  192 (473)
                      +|||.|...||||.+|..|+...+-.+|++|
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~~~~YiAT   31 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAPQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred             CEEEECCCCccHHHHHHHHHhcCCCcEEEEc
Confidence            4799999999999999999876665556665

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.14  Score=43.59  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      +-|++.|.+|+|||+|..++...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46889999999999999988653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.27  E-value=0.079  Score=44.53  Aligned_cols=21  Identities=19%  Similarity=0.370  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 011994          162 VILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      -|++.|.+|+|||||..++..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999987754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.04  E-value=0.16  Score=42.35  Aligned_cols=24  Identities=38%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +-|++.|.+|+||||+..++....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999996543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=87.63  E-value=0.12  Score=49.67  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +.|.|-|.-|+||||+++.|++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45999999999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.59  E-value=0.14  Score=45.25  Aligned_cols=22  Identities=36%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .-|+|.|.+|+||||+..++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999854

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.30  E-value=0.17  Score=40.71  Aligned_cols=30  Identities=17%  Similarity=0.065  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi  190 (473)
                      .+.+|.++.|+|||+++-.+....|...++
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli   38 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLV   38 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTCCEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCCcEEE
Confidence            367999999999999998888788876554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.28  E-value=0.18  Score=41.79  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +-|++.|..|+||||+..+|..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998854

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.22  E-value=0.13  Score=46.42  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      |.+-+|+|++||||||+-.+|+--||..
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg~~   51 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFGEQ   51 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSCC-
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            4477899999999999999997766653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.15  E-value=0.31  Score=41.79  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          161 LVILVC-GTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       161 ~iIlI~-G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      .+|.|. +-.|+||||+|..||..|   |.++++
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vll   36 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA   36 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            355555 889999999999998876   666543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.47  E-value=0.16  Score=48.31  Aligned_cols=30  Identities=30%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      ..++|.|++|+|||++...|...+   |...++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ii   83 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVI   83 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            468999999999999987665443   666554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.33  E-value=0.24  Score=44.93  Aligned_cols=28  Identities=21%  Similarity=0.355  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      -..|+|.|||++|||++|..|..-++-.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            3589999999999999999999988643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.17  E-value=0.25  Score=45.86  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          160 PLVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      |-+-+|.|++|+|||++..+|.--||.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            446788999999999999999876765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.26  Score=41.94  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHh
Q 011994          161 LVILVCGTACVGKSTIATQLAQR  183 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~  183 (473)
                      .-|++.|.+|+|||||..++...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999988653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.54  E-value=0.42  Score=43.31  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=21.8

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ....|  |+|.|.+|+||+++|+.|....
T Consensus        21 ~~~~p--vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          21 CAECP--VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             TCCSC--EEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCC--EEEECCCCcCHHHHHHHHHHhc
Confidence            44556  5888999999999999997654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.12  E-value=0.7  Score=44.72  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 011994          158 RVPLVILVCGTACVGKSTIATQLA  181 (473)
Q Consensus       158 ~~P~iIlI~G~~GsGKSTlA~~LA  181 (473)
                      ..|+.|.|.|.||+||||+...|-
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            358899999999999999999885

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.03  E-value=0.42  Score=41.02  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      |.+..|-.|+||||+|..||..|   |.+.++
T Consensus         4 Iav~s~KGGvGKTtia~nlA~~la~~g~~Vll   35 (232)
T d1hyqa_           4 ITVASGKGGTGKTTITANLGVALAQLGHDVTI   35 (232)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCCCChHHHHHHHHHHHHHhCCCCEEE
Confidence            45555999999999999988766   666543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.90  E-value=0.37  Score=43.62  Aligned_cols=29  Identities=24%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          162 VILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      .|.|.|=-|+||||+|.-||..|   |.++++
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLl   35 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI   35 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            45678999999999888777655   777543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=83.87  E-value=0.35  Score=42.51  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VP-LVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P-~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      +| +.|.|.|+.++|||||+.+|...+
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHH
Confidence            46 459999999999999999886543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.06  E-value=0.37  Score=44.84  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...++.|.|++|+||||+|..++...
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHH
Confidence            34699999999999999998887644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.04  E-value=0.4  Score=42.44  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +.|.+.|+-++|||||+..|-...|.-
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i   30 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFI   30 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCc
Confidence            469999999999999999998777753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=82.82  E-value=0.37  Score=40.67  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +.|-|.|.+.+|||||...|..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4689999999999999999974

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.03  E-value=2.2  Score=38.70  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994          156 HQRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL  190 (473)
Q Consensus       156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi  190 (473)
                      ....|+..|++|..|||||-++-..+...   |...++
T Consensus        72 ~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~  109 (233)
T d2eyqa3          72 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV  109 (233)
T ss_dssp             HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEE
T ss_pred             hccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEE
Confidence            45678999999999999999998887654   655443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.93  E-value=0.42  Score=44.38  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994          159 VPLVILVCGTACVGKSTIATQLAQRL  184 (473)
Q Consensus       159 ~P~iIlI~G~~GsGKSTlA~~LA~~L  184 (473)
                      ...++.|.|++||||||+|..++...
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHH
Confidence            45699999999999999999887654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.86  E-value=0.4  Score=43.41  Aligned_cols=22  Identities=32%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 011994          161 LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      .+++|+|++++||||+.+.++-
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHH
Confidence            5789999999999999998874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=80.95  E-value=0.51  Score=42.25  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          162 VILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       162 iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      .|+++|+.++|||||+..|....|.
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4888999999999999999877774

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=80.93  E-value=0.53  Score=40.72  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHH
Q 011994          159 VP-LVILVCGTACVGKSTIATQLAQ  182 (473)
Q Consensus       159 ~P-~iIlI~G~~GsGKSTlA~~LA~  182 (473)
                      +| +.|.|.|...+|||||...|..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            56 5699999999999999999954

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=80.86  E-value=0.53  Score=43.62  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +.|.|.|+.|+|||||+..|....|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            46899999999999999999776654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.72  E-value=0.4  Score=43.48  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNLP  187 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~  187 (473)
                      +.|.|+|+.++|||||+..|....|.-
T Consensus        25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i   51 (245)
T d1r5ba3          25 VNIVFIGHVDAGKSTLGGNILFLTGMV   51 (245)
T ss_dssp             EEEEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            349999999999999999998877754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.68  E-value=0.5  Score=44.17  Aligned_cols=26  Identities=15%  Similarity=0.070  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994          161 LVILVCGTACVGKSTIATQLAQRLNL  186 (473)
Q Consensus       161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~  186 (473)
                      +.|.|+|+.|+|||||+..|....|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            57999999999999999999877664