Citrus Sinensis ID: 012006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEcccEEEccccccccccccEEEEEEEcccEEEEEEEcccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccccccEEEEcccHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccEEEccccccccccccEEEEEEccccEEEEEEccccccccccccccccccEEEccccHHHcEEEEccccccccEEEEEEEccccccccEEcccccHHHHHHHHHHHHHHccccccccEEEEccccHHHHHccEEEccccccccccccccHHHHccccccccHHccccHHcccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcccHHHccccccHHHHccccccccccHHHHHcccHHHEEEcccccccHHHHHcccccccccccccccHHHHHHHccccccEccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHcc
Coil and Loop (DISEMBL)
mqemelhdlsddaDYAASMqqgsssmmrsdsskrssssesegaelvylkdnvtihptqfASERISGRLKLIKQGSSLFMTWipykgqnsntrlsekdrnlytiravpftevrsirrhtpaFGWQYIIVVLSsglafpplyfytgGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSslelpravsiasgsstpvsigdsptnvnlertngglghdshsisqfhgrqkqkaqdpardISIQVLEKFSLVTKFARETTSQLFRenhsngfgafekkfdsqsaldfdhkasydtetivneipvapdpvefdkltlvwgkprqpplgseewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQVITSNIE
Flexible Loop (DISEMBL)
MQEMELHDLSDDADYAASMQqgsssmmrsdsskrssSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIpykgqnsntrlsekdrnlytiravpftevrsirrHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAvsiasgsstpvsigdsptNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWgkprqpplgseewttfldnegrvmdsnaLRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQVITSNIE
Low Complexity Region (SEG)
MQEMELHDLSDDADYAAsmqqgsssmmrsdsskrssssesegAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE
Disordered region (IsUnstruct)
********************************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQN*******KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTL*************************************************************ISIQVLEKFSLVTKFARETTSQLFR*****GFGAFE*******ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPR***LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVIT****
Disordered Region (DISOPRED)
****ELH***DD********************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWI**********************AVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLA*******************************************************************************************************************************EKKFDSQSALDFDHKASYDTETI******************************EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSN**
Disordered Region (DISEMBL)
*********SDDADYAA*************************AELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH*****************RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE
Disordered Region (DISPRO)
******HDLSDDADYAASMQQG***************SESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVN*ERT********************KAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLV***PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q8TC07	691	TBC1 domain family member	yes	no	0.680	0.465	0.311	2e-39
Q9HA65	648	TBC1 domain family member	no	no	0.630	0.459	0.319	4e-39
Q9CXF4	671	TBC1 domain family member	yes	no	0.300	0.211	0.478	1e-35
Q8BYH7	645	TBC1 domain family member	no	no	0.306	0.224	0.455	8e-32
Q8TBP0	767	TBC1 domain family member	no	no	0.293	0.181	0.475	6e-30
Q9UUH7	743	GTPase-activating protein	yes	no	0.871	0.554	0.248	1e-25
P09379	730	GTPase-activating protein	yes	no	0.841	0.545	0.241	2e-21
Q6BU76	757	GTPase-activating protein	yes	no	0.862	0.538	0.226	2e-19
A1A5B6	742	TBC1 domain family member	no	no	0.298	0.190	0.362	4e-19
Q3MII6	688	TBC1 domain family member	no	no	0.298	0.204	0.362	1e-18

>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 175/360 (48%), Gaps = 38/360 (10%)

Query: 108 FTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDAN 167
            T+++SI+++    GW Y++  L   +  P L+F+ G  +          LL+ S+E   
Sbjct: 132 LTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSK----------LLIESLEKYV 181

Query: 168 VFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSIS 227
           V   +  D R         L       S S +  ++ D P    ++    GL      + 
Sbjct: 182 VLCESPQDKR--------TLLVNCQNKSLSQSFENLLDEPAYGLIQ---AGLLDRRKLLW 230

Query: 228 QFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKF-DSQS 286
             H  +K K +DP     I     FS VT +  ++        H            D+  
Sbjct: 231 AIHHWKKIK-KDPYTATMI----GFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIP 285

Query: 287 ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMD 346
            L  + +     E ++  I +   PV            R+ P+  EEWT  +D+EGR+++
Sbjct: 286 GLKINQQEEPGFE-VITRIDLGERPV----------VQRREPVSLEEWTKNIDSEGRILN 334

Query: 347 SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406
            + +++ IF GG+ H LR++ W FLLGY+ +DST  ER  L+  K  EY  +K QW+SIS
Sbjct: 335 VDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSIS 394

Query: 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
            EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP + LL DIL+TY  Y+FDLGY Q
Sbjct: 395 QEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQ 454

Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)

>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 174/369 (47%), Gaps = 71/369 (19%)

Query: 105 AVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVE 164
           +V   E++SIRR  P   W Y+++V  +G + P L+F+ GG R  L  + +++LL  S +
Sbjct: 120 SVSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQ 179

Query: 165 DANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH 224
                     D+RL      L  P   S  S S   + + D  +              S+
Sbjct: 180 ----------DSRLY-----LVFPHDSSALSNSFHHLQLFDQDS--------------SN 210

Query: 225 SISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDS 284
            +S+F        QDP           FS VT F R               GA + + + 
Sbjct: 211 VVSRF-------LQDPYS----TTFSSFSRVTNFFR---------------GALQPQPEG 244

Query: 285 QSALDFDHKASYDTET---IVNEIPVAPDP-VEFDKLTLVWGKPRQPPLGSEEWTTFLDN 340
            +A D       + E    +++ + + P P VE           R PP+  EEW   +  
Sbjct: 245 -AASDLPPPPDDEPEPGFEVISCVELGPRPTVE-----------RGPPVTEEEWARHVGP 292

Query: 341 EGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKR 400
           EGR+     L+ RIF GG+   LRRE W FLLGY +++ T  E +     K  EY  +K 
Sbjct: 293 EGRLQQVPELKNRIFSGGLSPSLRREAWKFLLGYLSWEGTAEEHKAHIRKKTDEYFRMKL 352

Query: 401 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNF 460
           QW+S+SPEQ RR +     + LI++DV RTDR+  F++G +NP + LL DILLTY  Y+F
Sbjct: 353 QWKSVSPEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHF 412

Query: 461 DLGYCQVIT 469
           DLGY Q ++
Sbjct: 413 DLGYVQGMS 421

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 98/142 (69%)

Query: 325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
           R+ P+  EEW   LD EGR++   +++++IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct: 296 RREPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEER 355

Query: 385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
             L+  K  EY  +K QW+S+S  Q +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct: 356 TQLQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 415

Query: 445 VHLLRDILLTYSFYNFDLGYCQ 466
           + LL DIL+TY  Y+FDLGY Q
Sbjct: 416 LILLHDILMTYCMYDFDLGYVQ 437

Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.

Mus musculus (taxid: 10090)

>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2

 Score =  138 bits (348), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 93/145 (64%)

Query: 325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
           R PP+  EEW  ++  EGR+ +   L+ RIF GG+   LRRE W FLLGY +++S+  E 
Sbjct: 277 RAPPVTEEEWNRYVGPEGRLQNVPELKNRIFSGGLSPGLRREAWKFLLGYLSWESSAEEH 336

Query: 385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
           +     K  EY  +K QW+S+S EQ RR +     + LI++DV RTDR+  F++G +NP 
Sbjct: 337 KAHVRKKTDEYFRMKLQWKSVSAEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPG 396

Query: 445 VHLLRDILLTYSFYNFDLGYCQVIT 469
           + LL DILLTY  Y+FDLGY Q ++
Sbjct: 397 LSLLHDILLTYCMYHFDLGYVQGMS 421

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 329 LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLR 388
           LG   W   L+  G+V +   LRK IF+GG+D  +R EVW FLL YY+++ST  ERE LR
Sbjct: 396 LGVSAWLNHLNELGQVEEEYKLRKAIFFGGIDVSIRGEVWPFLLRYYSHESTSEEREALR 455

Query: 389 CIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLL 448
             K+ EY  I+++  S++PE+ R F  +R  +  +DKDVVRTDR+  FF G+DNPNV  +
Sbjct: 456 LQKRKEYSEIQQKRLSMTPEEHRAF--WRNVQFTVDKDVVRTDRNNQFFRGEDNPNVESM 513

Query: 449 RDILLTYSFYNFDLGYCQVIT 469
           R ILL Y+ YN  +GY Q ++
Sbjct: 514 RRILLNYAVYNPAVGYSQGMS 534

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 213/511 (41%), Gaps = 99/511 (19%)

Query: 45  LVYLKDNVTIHPTQFASERISGRLKLIKQ---------GSSLFMTWIPYKG--------- 86
           L++ K  V +HPT    + ISG L L K          GS + ++W+P            
Sbjct: 31  LLFSKSKVFVHPTSKMKDNISGYLSLSKSKALGNSSVAGSDILLSWVPDSFLKNRPRDLS 90

Query: 87  --QNSNTRLSEKDRNLYTIR-------AVPFTEVRSIRRHTPAFGWQYIIVVLS---SGL 134
             QN+ T  +   R    I        +V    + SI    P +GW Y  +V++   SG 
Sbjct: 91  VFQNAETLSNGSIREWVEIPQHLDYSFSVRLCSIYSIIFRPPRYGWNYGSIVINLRDSGE 150

Query: 135 AFPPLYFYTG----------------------------GVREFLATIKQHVLLVRSVEDA 166
           + PPL+F+                              G    L  +K++  L +S  ++
Sbjct: 151 SLPPLFFHDDECISTIEYGKQITRDRFDPFDESGNMFWGGTHLLMQLKKYASLEQSSHES 210

Query: 167 NVFLVNDFDNRLQRTLSSLELPRAVSI--ASGSSTPVSIGDSPTNVN------------- 211
            ++LVN           S+EL + +S    + SSTP +   S +  N             
Sbjct: 211 QLYLVNPSPED-TVAFQSVELQKVISNNRLNSSSTPPTPRSSSSIFNPFRRALHDLSFTV 269

Query: 212 LERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARE-TTSQLFREN 270
           LER +    +    + +    +  K+  P     +QVL +   V K   E   +++F   
Sbjct: 270 LERFSRVTNYGKSEVDRLMEHKVTKSILPHLPRELQVLLESKRVQKLTEEYDPARMFLAR 329

Query: 271 HSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLG 330
            + G     +  +SQ     ++   +       +  + P    F+ + +     R  PL 
Sbjct: 330 WAEGIVEQSESNNSQPV---NNAGVWTDAQREEDSSLGP----FELVYIEERVKRDDPLS 382

Query: 331 SEEWTTFLDNEGRV-MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRC 389
            E+W +  +  G++ +D + +   IF+GG+   LR+EVW FLL  Y +DST  ER  +  
Sbjct: 383 VEQWNSMFNAHGKLQVDVHRVLGIIFHGGIQPSLRKEVWPFLLSVYPWDSTSEERRVIYL 442

Query: 390 IKKSEYENIKRQW-QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP----- 443
             + EY  +KR+W + I  +   R+  F E++  I+KDV RTDR   +F  +D P     
Sbjct: 443 SLQEEYCTLKRKWYEDIHKQFNDRW--FIEQRNRIEKDVHRTDRQHEYFQIEDLPHPDPQ 500

Query: 444 --------NVHLLRDILLTYSFYNFDLGYCQ 466
                   N+ +++DILLTY+ Y+ +LGY Q
Sbjct: 501 STFTGTNMNMEMMKDILLTYNEYDTELGYVQ 531

Most effectively accelerates the intrinsic GTPase activity of ypt7.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 209/530 (39%), Gaps = 132/530 (24%)

Query: 44  ELVYLKDNVTIHPTQFASERISGRLKLIK-QGSS----LFMTWIPYK------------- 85
           +L  +   V +HPT  + + I G L L K +G++    + + WIP               
Sbjct: 13  QLTSINHQVYVHPTPSSKDNIPGFLALAKPRGATTDKEILVAWIPESKLQESAADFESYV 72

Query: 86  -------GQNSNTRLSEKDRNLYTIR---------AVPFTEVRSIRRHTPAFGWQYIIVV 129
                  G  +++ L+  +  +             ++P +++ S++   P+ GW +  + 
Sbjct: 73  KVDIKESGTPASSSLNLAETLVSPPPSSSFSSYAFSIPISDIFSLQVKQPSLGWWWGSIT 132

Query: 130 L---SSGLAFPPLYFYTG-----------------------------GVREFLATIKQHV 157
           +   S     PPLYF+                               G   F+  + ++ 
Sbjct: 133 IHTRSKEDQLPPLYFHDAESQSTIMEQKRRNKKFETFDSESGSSMFWGGDHFIQVLSKYA 192

Query: 158 LLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVS-IGDSPTNVNLERTN 216
            L R+  D +  LVN  +   +R           ++  GS  P   +   P      R  
Sbjct: 193 NLERAESDHSFLLVNPREGDAERF--------GTNLTGGSEEPSQLVAGIPG-----RGA 239

Query: 217 GGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFG 276
           GG   D        G Q QKA     DI   +L   + VT+  R+ +  ++  +      
Sbjct: 240 GGDPVD-------RGAQVQKA---FSDIRWGLLSNLAKVTQLTRKVSQGVWDSSPQPVKQ 289

Query: 277 AFEKKFDSQSALDFDHKASYDTE---TIVNEIPVAPDPVEFD------------KLTLVW 321
              K    +   DFD    Y  +   ++  E   A   V FD            +L    
Sbjct: 290 LLMKPEVKKIGDDFDSARIYLAKWALSVAEESQRAKLKVLFDDELRELVSDEGFELIDAE 349

Query: 322 GKP-RQPPLGSEEWTTFLDNEGR-VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDS 379
             P R+  +   EW  F D  GR ++  N +++RIF+GG+   +R E W FLLG Y +DS
Sbjct: 350 NNPQRRNEVSLAEWNAFFDYNGRLIVTVNEVKERIFHGGLAPAVRPEGWLFLLGVYPWDS 409

Query: 380 TYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDG 439
           T AER+ L    + +Y  +K++W     E   R   +R++   I+KDV RTDR++TFF  
Sbjct: 410 TAAERKELVSKLRVDYNRLKKEWW--VQEDKERDDFWRDQLSRIEKDVHRTDRNITFFAE 467

Query: 440 DD---------------------NPNVHL--LRDILLTYSFYNFDLGYCQ 466
            D                     N N+HL  LRD+L+TY+ +N +LGY Q
Sbjct: 468 CDAKKDGDDDNYDKDEFGFSSQINSNIHLIQLRDMLITYNQHNKNLGYVQ 517

Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 128/565 (22%), Positives = 219/565 (38%), Gaps = 157/565 (27%)

Query: 32  SKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSS----LFMTWIPYKGQ 87
           +KR  S  S   EL+Y K    +HPT    + I G L L +  ++    + ++++  K  
Sbjct: 7   AKRKKSISSNEVELLYTKSKTYLHPTTSKKDNIPGYLSLSRGANAANRDIIISFMSEKQL 66

Query: 88  NS--------------------------NTRLSEKDRNLYTIR------------AVPFT 109
           +S                          N+R S K RNL  +             ++P +
Sbjct: 67  SSEELKAYENVDIADLQDDLEALKLGGTNSRSSGK-RNLNIVSKPPTSSAFGFCFSIPIS 125

Query: 110 EVRSIRRHTPAFGWQY--IIVVLSSGLAFPPLYF-------------------------- 141
            V SI+   P+ GW +  II+    G   P ++F                          
Sbjct: 126 FVYSIQVRKPSVGWWFGSIIINTQDGEKLPIVFFHDDESPSTLKNQKVRNQRFDPFGDNG 185

Query: 142 --YTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSST 199
             Y GG  +F+  + +   + +S  + +V+L+N   N L R  +  + P+     +    
Sbjct: 186 EMYWGG-SDFMNALGKFADVQKSSVEPSVYLINPESNDL-RNFAPFKEPKTAKTETNQE- 242

Query: 200 PVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEK-FSLVTKF 258
           P  + D                    +++F    K K  +     S +   +   LV + 
Sbjct: 243 PFKLPD--------------------VNKFFANAKWKVLETVATFSAKTRNQVLDLVDEN 282

Query: 259 ARETTSQLFRENHSNGFGAFEKKFDS-------------QSALDFDHKASYDTET---IV 302
           A     Q+  +      G    +FDS             + A +   K   D E    I 
Sbjct: 283 APMPIKQIINKPEVQKIG---NEFDSARVYLAKWAAQVKEEAEEAHRKYQLDDEIYNKIN 339

Query: 303 NEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDS-NALRKRIFYGGVDH 361
            E+ V  +  E      V    R+ P+   EW    D  GR++ S + ++ RIF+GG++ 
Sbjct: 340 KELGVGSN-TEILTDEEVSKTSRRKPISKVEWEGLFDFSGRLIISIDEIKDRIFHGGLED 398

Query: 362 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421
            +R E W FLL  Y +DS+  ER+ LR   ++ YE IK +W  ++ +  R    ++++K 
Sbjct: 399 CIRGEAWLFLLNVYPWDSSAEERKTLRNSFQTAYEEIKLKW--VNDDDKRSVDFWKDQKH 456

Query: 422 LIDKDVVRTDRSVTFF----------------------------DGDD---------NPN 444
            I+KD+ RTDR+++ F                            + DD         NP+
Sbjct: 457 RIEKDINRTDRNLSIFQNKKKISISGVGSDRLPTTRESSPETPDEADDDEFDVSNITNPH 516

Query: 445 VHLLRDILLTYSFYNFDLGYCQVIT 469
           +  +R+ILLTY+ +N +LGY Q +T
Sbjct: 517 LFKMREILLTYNEHNVNLGYVQGMT 541

Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 8/149 (5%)

Query: 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYA 382
           KP +PPL   E+ T+L++EG++     LR RI++GGV+  LR+ VW +LL  Y    T  
Sbjct: 247 KPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGR 306

Query: 383 EREYLRCIKKSEYENIKRQW-QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDG-D 440
           ER      K  EYE +K +W Q ++PE           +  + KDV+RTDR+  ++ G +
Sbjct: 307 ERMDYMKRKSREYEQLKSEWAQRVNPEDLEFI------RSTVLKDVLRTDRAHPYYAGPE 360

Query: 441 DNPNVHLLRDILLTYSFYNFDLGYCQVIT 469
           D P++  L D+L TY+  +  + YCQ ++
Sbjct: 361 DGPHLRALHDLLTTYAVTHPQVSYCQGMS 389

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 8/149 (5%)

Query: 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYA 382
           KP +PPL   E+ T+L++EG++     LR RI++GGV+  LR+ VW +LL  Y    T  
Sbjct: 193 KPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGR 252

Query: 383 EREYLRCIKKSEYENIKRQW-QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDG-D 440
           ER      K  EYE +K +W Q  +PE           +  + KDV+RTDR+  ++ G +
Sbjct: 253 ERMDYMKRKSREYEQLKSEWAQRANPEDLEFI------RSTVLKDVLRTDRAHPYYAGPE 306

Query: 441 DNPNVHLLRDILLTYSFYNFDLGYCQVIT 469
           D P++  L D+L TY+  +  + YCQ ++
Sbjct: 307 DGPHLRALHDLLTTYAVTHPQVSYCQGMS 335

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
225445585	657	PREDICTED: GTPase-activating protein gyp	0.991	0.713	0.765	0.0
449443057	655	PREDICTED: TBC1 domain family member 15-	0.985	0.711	0.744	0.0
297738991	684	unnamed protein product [Vitis vinifera]	0.991	0.685	0.723	0.0
449494018	485	PREDICTED: TBC1 domain family member 15-	0.983	0.958	0.741	0.0
356548490	656	PREDICTED: TBC1 domain family member 15-	0.976	0.704	0.725	0.0
356562977	655	PREDICTED: TBC1 domain family member 15-	0.980	0.708	0.710	0.0
357478201	666	TBC1 domain family member [Medicago trun	0.980	0.696	0.707	0.0
255572477	645	conserved hypothetical protein [Ricinus	0.945	0.693	0.738	0.0
186531517	673	RabGAP/TBC domain-containing protein [Ar	0.980	0.689	0.661	1e-179
297792599	674	hypothetical protein ARALYDRAFT_495330 [	0.980	0.688	0.658	1e-178

>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/469 (76%), Positives = 410/469 (87%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           MQE ELHDLSDDADYAAS  QGS+S  RS SSKRSSSSES+GAE+VY KDNVTIHPTQ+A
Sbjct: 1   MQEAELHDLSDDADYAASQLQGSASFSRSGSSKRSSSSESDGAEIVYSKDNVTIHPTQYA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGSSLFMTWIPYKGQ SN RLSEKD++LYTIRAVPFT+VRSIRRHTP 
Sbjct: 61  SERISGRLRLIKQGSSLFMTWIPYKGQRSNPRLSEKDKSLYTIRAVPFTDVRSIRRHTPT 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLATIKQH  LVRS +DANVFLVNDF + LQR
Sbjct: 121 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAFLVRSADDANVFLVNDFQDPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDP 240
           TLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  DP
Sbjct: 181 TLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIHDP 240

Query: 241 ARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTET 300
           ARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D + 
Sbjct: 241 ARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDEQK 300

Query: 301 IVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVD 360
           + +EIPV  DP+EFDKL LVWGKPRQPPLGSEEW TFLD+EGR+MDS ALRKRIFYGG++
Sbjct: 301 VPDEIPVPSDPLEFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGGIE 360

Query: 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 420
           H LR+EVW FLLGY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRERK
Sbjct: 361 HSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRERK 420

Query: 421 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVIT 469
           GLI+KDVVRTDRS++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQ ++
Sbjct: 421 GLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMS 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/470 (74%), Positives = 400/470 (85%), Gaps = 4/470 (0%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           M E +LHDLSDDADYAAS QQGS++MMR+DS + SSSSE EGAE+VY K+NVTIHPTQFA
Sbjct: 1   MLETDLHDLSDDADYAASQQQGSTTMMRTDSGRGSSSSEHEGAEVVYSKENVTIHPTQFA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGS LF+TWIPYKGQNSN +LSE+DRNLYTIR VPFTEVRSIRRHTPA
Sbjct: 61  SERISGRLRLIKQGSCLFITWIPYKGQNSNAKLSERDRNLYTIRGVPFTEVRSIRRHTPA 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
           FGWQY+I+VLSSGLAFP LYFY GGVREFLAT+KQHV LVRS EDAN FLVNDF N LQR
Sbjct: 121 FGWQYVIIVLSSGLAFPSLYFYNGGVREFLATVKQHVFLVRSEEDANTFLVNDFQNPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHS-ISQFHGRQKQKAQD 239
           TLSSLELPR+ SIAS  S+        +  N ER  G   HD  S IS++ G+Q+ KAQD
Sbjct: 181 TLSSLELPRSGSIASAVSSASV---DVSPSNSERRAGEDSHDERSRISRYGGKQRHKAQD 237

Query: 240 PARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTE 299
           PARD+ IQ+LEKFSLVTKFARETTSQLFRENH+NGF   E +  +QS+LD    +S D E
Sbjct: 238 PARDLPIQILEKFSLVTKFARETTSQLFRENHNNGFSVAEMRIQNQSSLDSPQTSSNDLE 297

Query: 300 TIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGV 359
            + ++ PV  DP++FDKLTLVWGKPRQPPLGSEEW TFLD EGRV+DS +LRKRIFYGGV
Sbjct: 298 KVTDDSPVVQDPIQFDKLTLVWGKPRQPPLGSEEWATFLDAEGRVLDSTSLRKRIFYGGV 357

Query: 360 DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRER 419
           +H LR+EVWAFLLG++AY+STYAEREYL+ IK+SEY  IK QWQSISPEQA+RFTKF+ER
Sbjct: 358 EHNLRKEVWAFLLGFHAYNSTYAEREYLQSIKRSEYLTIKNQWQSISPEQAKRFTKFKER 417

Query: 420 KGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVIT 469
           KGLI+KDVVRTDRS++FFDGD+NPNV LL DILLTYSFYNFDLGYCQ ++
Sbjct: 418 KGLIEKDVVRTDRSLSFFDGDENPNVKLLHDILLTYSFYNFDLGYCQGMS 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/496 (72%), Positives = 410/496 (82%), Gaps = 27/496 (5%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           MQE ELHDLSDDADYAAS  QGS+S  RS SSKRSSSSES+GAE+VY KDNVTIHPTQ+A
Sbjct: 1   MQEAELHDLSDDADYAASQLQGSASFSRSGSSKRSSSSESDGAEIVYSKDNVTIHPTQYA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGSSLFMTWIPYKGQ SN RLSEKD++LYTIRAVPFT+VRSIRRHTP 
Sbjct: 61  SERISGRLRLIKQGSSLFMTWIPYKGQRSNPRLSEKDKSLYTIRAVPFTDVRSIRRHTPT 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLATIKQH  LVRS +DANVFLVNDF + LQR
Sbjct: 121 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAFLVRSADDANVFLVNDFQDPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDP 240
           TLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  DP
Sbjct: 181 TLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIHDP 240

Query: 241 ARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTET 300
           ARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D + 
Sbjct: 241 ARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDEQK 300

Query: 301 IVNEIPVAPDPV---------------------------EFDKLTLVWGKPRQPPLGSEE 333
           + +EIPV  DP+                           EFDKL LVWGKPRQPPLGSEE
Sbjct: 301 VPDEIPVPSDPLEKTRCRKQYHDEEAVTNVGTFELIDCKEFDKLALVWGKPRQPPLGSEE 360

Query: 334 WTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKS 393
           W TFLD+EGR+MDS ALRKRIFYGG++H LR+EVW FLLGY+AYDST AEREYL  IKKS
Sbjct: 361 WATFLDSEGRIMDSKALRKRIFYGGIEHSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKS 420

Query: 394 EYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILL 453
           EYE +K+QWQSISPEQA+RFTKFRERKGLI+KDVVRTDRS++F+DGDDNPNV+LLRDILL
Sbjct: 421 EYETVKQQWQSISPEQAKRFTKFRERKGLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILL 480

Query: 454 TYSFYNFDLGYCQVIT 469
           TYSFYNFDLGYCQ ++
Sbjct: 481 TYSFYNFDLGYCQGMS 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494018|ref|XP_004159423.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/472 (74%), Positives = 398/472 (84%), Gaps = 7/472 (1%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           M E +LHDLSDDADYAAS QQGS++MMR+DS + SSSSE EGAE+VY K+NVTIHPTQFA
Sbjct: 1   MLETDLHDLSDDADYAASQQQGSTTMMRTDSGRGSSSSEHEGAEVVYSKENVTIHPTQFA 60

Query: 61  SERISGRLKLIKQGSSLFM---TWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRH 117
           SERISGRL+LIKQGS  F    TWIPYKGQNSN +LSE+DRNLYTIR VPFTEVRSIRRH
Sbjct: 61  SERISGRLRLIKQGSCRFHCKHTWIPYKGQNSNAKLSERDRNLYTIRGVPFTEVRSIRRH 120

Query: 118 TPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNR 177
           TPAFGWQY+I+VLSSGLAFP LYFY GGVREFLAT+KQHV LVRS EDAN FLVNDF N 
Sbjct: 121 TPAFGWQYVIIVLSSGLAFPSLYFYNGGVREFLATVKQHVFLVRSEEDANTFLVNDFQNP 180

Query: 178 LQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHS-ISQFHGRQKQK 236
           LQRTLSSLELPR+ SIAS  S+        +  N ER  G   HD  S IS++ G+Q+ K
Sbjct: 181 LQRTLSSLELPRSGSIASAVSSASV---DVSPSNSERRAGEDSHDERSRISRYGGKQRHK 237

Query: 237 AQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASY 296
           AQDPARD+ IQ+LEKFSLVTKFARETTSQLFRENH+NGF   E +  +QS+LD    +S 
Sbjct: 238 AQDPARDLPIQILEKFSLVTKFARETTSQLFRENHNNGFSVAEMRIQNQSSLDSPQTSSN 297

Query: 297 DTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFY 356
           D E + ++ PV  DP++FDKLTLVWGKPRQPPLGSEEW TFLD EGRV+DS +LRKRIFY
Sbjct: 298 DLEKVTDDSPVVQDPIQFDKLTLVWGKPRQPPLGSEEWATFLDAEGRVLDSTSLRKRIFY 357

Query: 357 GGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKF 416
           GGV+H LR+EVWAFLLG++AY+STYAEREYL+ IK+SEY  IK QWQSISPEQA+RFTKF
Sbjct: 358 GGVEHNLRKEVWAFLLGFHAYNSTYAEREYLQSIKRSEYLTIKNQWQSISPEQAKRFTKF 417

Query: 417 RERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVI 468
           +ERKGLI+KDVVRTDRS++FFDGD+NPNV LL DILLTYSFYNFDLGYCQV+
Sbjct: 418 KERKGLIEKDVVRTDRSLSFFDGDENPNVKLLHDILLTYSFYNFDLGYCQVL 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/467 (72%), Positives = 385/467 (82%), Gaps = 5/467 (1%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSS-MMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQF 59
           M E ELHDLSDDADYAAS QQGS+S M+RSDS+K+SS  E  GAE+V+LKDNV IHPTQF
Sbjct: 1   MLESELHDLSDDADYAASQQQGSASVMLRSDSAKQSSPRE--GAEIVFLKDNVAIHPTQF 58

Query: 60  ASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTP 119
           ASERISGRLKLIKQ SSL MTWIPYK  +S  RLS+KDRNLY IRAVPFT++RSIRRH P
Sbjct: 59  ASERISGRLKLIKQSSSLSMTWIPYKVHSSEARLSDKDRNLYIIRAVPFTDIRSIRRHNP 118

Query: 120 AFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQ 179
           AFGWQY+IVVLSSGLA PPLYFY+GGV+EFLATIKQHVLLVRS EDANVFLVNDF N LQ
Sbjct: 119 AFGWQYVIVVLSSGLAHPPLYFYSGGVKEFLATIKQHVLLVRSEEDANVFLVNDFQNTLQ 178

Query: 180 RTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQD 239
           RTLSSLE+PRAV +  G S   S+ +S    N ER + G      S++QFHG+ + K  D
Sbjct: 179 RTLSSLEMPRAVPLTCGPSN-TSVDESILIENQERADNGANDGRFSVNQFHGKPRHKV-D 236

Query: 240 PARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTE 299
           PARD+SIQVLEKFSLVT+FARETTSQLF EN SNGF   +++   Q+ LD   K+S   E
Sbjct: 237 PARDLSIQVLEKFSLVTRFARETTSQLFGENQSNGFSPIDRRTHIQTNLDHPKKSSNVEE 296

Query: 300 TIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGV 359
              +E PVA D  EFD L+LVWGKPRQPPLGSEEW TF+D+EGRV DS ALRKR+FYGG+
Sbjct: 297 NTSDESPVALDSQEFDNLSLVWGKPRQPPLGSEEWITFMDSEGRVTDSEALRKRVFYGGL 356

Query: 360 DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRER 419
           DHKLR EVW  LLGYY Y+STYAERE+L+ +KKSEY NIK QWQSIS  QA+RFTKFRER
Sbjct: 357 DHKLRNEVWGLLLGYYPYESTYAEREFLKSVKKSEYVNIKNQWQSISSAQAKRFTKFRER 416

Query: 420 KGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
           KGLI+KDVVRTDRS+ F++GDDNPNV++LRDILLTYSFYNFDLGYCQ
Sbjct: 417 KGLIEKDVVRTDRSLAFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQ 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/470 (71%), Positives = 385/470 (81%), Gaps = 6/470 (1%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSS-MMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQF 59
           M E ELHDLSDDADYAAS QQGS+S M+RSDS+K+SS     GAE+V+ KDNV IHPTQF
Sbjct: 1   MLESELHDLSDDADYAASQQQGSASVMLRSDSAKQSSPRN--GAEIVFSKDNVAIHPTQF 58

Query: 60  ASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTP 119
           ASERISGRLKLIKQ SSLFMTWIPYK  +S  RLS+KDRNLYTIRAVPFT++RSIRRH P
Sbjct: 59  ASERISGRLKLIKQSSSLFMTWIPYKAHSSEARLSDKDRNLYTIRAVPFTDIRSIRRHNP 118

Query: 120 AFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQ 179
           A GWQY+IVVLSSG ++PPLYFY+GGV+EFLATIKQHVLLVRS EDANVFLVNDF N LQ
Sbjct: 119 ALGWQYVIVVLSSGPSYPPLYFYSGGVKEFLATIKQHVLLVRSEEDANVFLVNDFQNTLQ 178

Query: 180 RTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQD 239
           RTLSSLE+PRAV +A G S   S+ +S    N ER + G      S++QFHGR + K  D
Sbjct: 179 RTLSSLEMPRAVPLACGPSN-TSVDESILIENQERADNGANDGRFSVNQFHGRPRHKV-D 236

Query: 240 PARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTE 299
           PARD+SIQVLEKFSLVT+FARETTSQLF EN SNGF   +++   Q+ LD    ++ +  
Sbjct: 237 PARDLSIQVLEKFSLVTRFARETTSQLFGENQSNGFSPIDRRTHIQTNLDHPKSSNVEEN 296

Query: 300 TIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGV 359
           T V E PV  D  EFD L+LVWGKPRQPPLGSEEW  FLD+EGRV DS ALRKR+FYGG+
Sbjct: 297 TSV-ESPVVLDSQEFDNLSLVWGKPRQPPLGSEEWNAFLDSEGRVTDSEALRKRVFYGGL 355

Query: 360 DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRER 419
           DH+L+ EVW  LLGYY Y+STYAERE+L+ +KK EYENIK QWQSIS  QA+RFTKFRER
Sbjct: 356 DHELQNEVWGLLLGYYPYESTYAEREFLKSVKKLEYENIKNQWQSISSAQAKRFTKFRER 415

Query: 420 KGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVIT 469
           KGLI+KDVVRTDRS+ F++GDDNPNV++LRDILLTYSFYNFDLGYCQ ++
Sbjct: 416 KGLIEKDVVRTDRSLAFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMS 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/482 (70%), Positives = 393/482 (81%), Gaps = 18/482 (3%)

Query: 1   MQEMELHDLSDDADYAA-SMQQGSSSMM-RSDSSKRSSSS-ESEGAELVYLKDNVTIHPT 57
           M E ELHDLSDD+DYAA S QQGS+S+M R+DS ++SSSS E EGAE+VY KDNV IHPT
Sbjct: 1   MLESELHDLSDDSDYAAASQQQGSASVMQRTDSFQQSSSSNELEGAEIVYSKDNVAIHPT 60

Query: 58  QFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRH 117
           QFA   ISGRLKLIKQG+SLFMTWIPYKG N++  LS+KDRNLYTIRAVPFT+VRSIRRH
Sbjct: 61  QFA---ISGRLKLIKQGTSLFMTWIPYKGHNADNGLSDKDRNLYTIRAVPFTDVRSIRRH 117

Query: 118 TPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNR 177
           TPA GWQYIIVVLSSGLA+PPLYFY+GGV+EFLATIKQHVLLVRS EDANVFLVNDF + 
Sbjct: 118 TPALGWQYIIVVLSSGLAYPPLYFYSGGVKEFLATIKQHVLLVRSAEDANVFLVNDFQST 177

Query: 178 LQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKA 237
           LQ+TLSSLELPRAV +A G S  +S  +S  N N ER + G+ + S S+ QFH R + K 
Sbjct: 178 LQKTLSSLELPRAVPLARGPSD-MSADESTLNENQERNDSGVNNGSVSVPQFHRRPRHKV 236

Query: 238 QDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKF----------DSQSA 287
            DP RD+SIQVLEKFSLVTKFARETTSQLFREN +NGF A E++            SQ+ 
Sbjct: 237 NDPTRDLSIQVLEKFSLVTKFARETTSQLFRENQTNGFRANERRTRIETNLDPPKSSQTN 296

Query: 288 LDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDS 347
           LD   K+S     + +E     D  EFD L+LVWGKPRQ PLGS+EW TF+D+EGRV+DS
Sbjct: 297 LD-PPKSSTVAGKVSDENSAFSDSKEFDNLSLVWGKPRQSPLGSKEWITFVDSEGRVIDS 355

Query: 348 NALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 407
            ALRKRIFYGG+DH+LR EVW  LLGYY YDSTYAERE+L+ +KKSEYE IK QWQSIS 
Sbjct: 356 EALRKRIFYGGLDHELRNEVWGLLLGYYPYDSTYAEREFLKSVKKSEYETIKNQWQSISS 415

Query: 408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQV 467
            QA+RFTKFRERKGLI+KDVVRTDRS+TF++GDDNPNV++LRDILLTYSFYNFDLGYCQ 
Sbjct: 416 AQAKRFTKFRERKGLIEKDVVRTDRSLTFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQG 475

Query: 468 IT 469
           ++
Sbjct: 476 MS 477

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/471 (73%), Positives = 383/471 (81%), Gaps = 24/471 (5%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMM---RSDSSKRSSSSESEGAELVYLKDNVTIHPT 57
           MQE ELHDLSDDADYAAS+QQGS+S+M      SSKRS+SSE EGAE+VYLKDNVTIHPT
Sbjct: 1   MQETELHDLSDDADYAASIQQGSASVMMTRSDSSSKRSTSSEPEGAEVVYLKDNVTIHPT 60

Query: 58  QFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRH 117
           QFASERISGRLKLIKQ SSLFMTWIPYKGQ SN RLSE+D NLYTIRAVPFT+VRSIRRH
Sbjct: 61  QFASERISGRLKLIKQASSLFMTWIPYKGQTSNARLSERDMNLYTIRAVPFTDVRSIRRH 120

Query: 118 TPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNR 177
           TP  GWQYIIVVLSSGLAFPPLYFY GGV+EFLAT+KQHV +VR                
Sbjct: 121 TPTLGWQYIIVVLSSGLAFPPLYFYNGGVKEFLATMKQHVFIVR---------------- 164

Query: 178 LQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKA 237
              TLSSLELPRAV +AS +S   S  +SP+  N ER +G +   S SI Q  GRQ+ K 
Sbjct: 165 ---TLSSLELPRAVPMASAASACPSASESPSYENQERADGNIHRGSSSIPQHDGRQRHKG 221

Query: 238 QDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALD-FDHKAS- 295
            DPARD+SIQVLEKFSLVTKFARETTSQLF ENHSNGF A E+K  +QS+LD   HK   
Sbjct: 222 NDPARDLSIQVLEKFSLVTKFARETTSQLFWENHSNGFDAIERKSYNQSSLDSCPHKTPP 281

Query: 296 YDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIF 355
            DTE +  +  V  DP+EFDKLTLVWGKPRQPPLG EEW TFLD+EGRV DS ALRKRIF
Sbjct: 282 KDTEEVSIQSAVPSDPLEFDKLTLVWGKPRQPPLGFEEWATFLDSEGRVTDSKALRKRIF 341

Query: 356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTK 415
           YGGV H LRREVWAFLLGY+AYDST AERE L+  KK EYE +K+QWQSISPEQA+RFTK
Sbjct: 342 YGGVGHTLRREVWAFLLGYHAYDSTSAERECLQYTKKLEYETVKKQWQSISPEQAKRFTK 401

Query: 416 FRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
           FRERKGLIDKDVVRTDRS++F+DGDDNPNV++LRDILLTYSFYNFDLGYCQ
Sbjct: 402 FRERKGLIDKDVVRTDRSLSFYDGDDNPNVNILRDILLTYSFYNFDLGYCQ 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/488 (66%), Positives = 385/488 (78%), Gaps = 24/488 (4%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           M+  EL DLSDDADYAAS QQGS+SMMRSDS KRS  SE E A L+YLKDNV IHPTQFA
Sbjct: 3   MEATELQDLSDDADYAASQQQGSASMMRSDSGKRSLQSEHEDAVLIYLKDNVAIHPTQFA 62

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRLKL KQ S LF++WIPYKGQ SN +LSEKDR+LYTI AVPFTEVRSIRRHTPA
Sbjct: 63  SERISGRLKLTKQDSVLFLSWIPYKGQTSNAKLSEKDRSLYTITAVPFTEVRSIRRHTPA 122

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLA +KQHV L RS ED NVF+VNDF + LQR
Sbjct: 123 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLAMVKQHVFLARSSEDQNVFIVNDFQSPLQR 182

Query: 181 TLSSLELPRAVSIASGSST-PVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQD 239
           TLSSLELP ++ +ASG S  P+  G S  N    RT+  +G+   S+SQ  G +KQK+ D
Sbjct: 183 TLSSLELPSSLPVASGQSVYPLDGGSSSENQR--RTSSDVGNRVSSVSQ-SGFRKQKSHD 239

Query: 240 PARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTE 299
           P RD+SI +LEKFSLVTKFAR+TT+QLF EN  NGFG+ +K++++Q    +  K S   E
Sbjct: 240 PTRDLSIHLLEKFSLVTKFARDTTTQLFSEN--NGFGSIDKRWNNQPVHSYPEKLSNIAE 297

Query: 300 TIVNE------------------IPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNE 341
              +E                  I V  DP+EFDKL+L+WGKPRQPP+G +E+T  LD+E
Sbjct: 298 EKHHEIRHSYSENDLLKDDEISYIDVPADPLEFDKLSLMWGKPRQPPMGHKEFTALLDSE 357

Query: 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ 401
           GRV++S ALR+R+FYGG++H+LRREVW FLLGYYAYDSTYAEREYLR +K+ EY  +K+Q
Sbjct: 358 GRVVESKALRERVFYGGIEHQLRREVWPFLLGYYAYDSTYAEREYLRSVKRMEYATLKQQ 417

Query: 402 WQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFD 461
           WQSISPEQA+RFTK+RERKGLIDKDVVRTDR+  +++GDDN +V+ +RDILLTYSFYNFD
Sbjct: 418 WQSISPEQAKRFTKYRERKGLIDKDVVRTDRAFEYYEGDDNLHVNSMRDILLTYSFYNFD 477

Query: 462 LGYCQVIT 469
           LGYCQ ++
Sbjct: 478 LGYCQGMS 485

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 322/489 (65%), Positives = 385/489 (78%), Gaps = 25/489 (5%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           M+  EL DLSDDADYAAS QQGS+SMMRSDS KRSS SE + AEL+YLKDNV IHPTQFA
Sbjct: 3   MEASELQDLSDDADYAASQQQGSASMMRSDSGKRSSPSEHDDAELIYLKDNVAIHPTQFA 62

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRLKL KQ S LF++WIPYKGQ SN +LSEKDR+LYTI AVPFTEVRSIRRHTP 
Sbjct: 63  SERISGRLKLTKQDSVLFLSWIPYKGQTSNAKLSEKDRSLYTITAVPFTEVRSIRRHTPT 122

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLA +KQHV L RS ED NVF+VNDF + LQR
Sbjct: 123 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLAIVKQHVFLARSSEDPNVFIVNDFQSPLQR 182

Query: 181 TLSSLELPRAVSIASGSST-PVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQD 239
           TLSSLELP ++ +ASG S  P+  G S  N N  RT+  +G+   S+ Q  G +K K+ D
Sbjct: 183 TLSSLELPSSLPVASGQSVYPLDGGSS--NENQGRTSADIGNRVSSVIQ-SGLRKHKSHD 239

Query: 240 PARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKAS---- 295
           P RD+SI +LEKFSLVTKFAR+TT+QLF EN  NGFG+ +K++++     +  K S    
Sbjct: 240 PTRDLSIHLLEKFSLVTKFARDTTTQLFSEN--NGFGSVDKRWNNLPVHSYPEKLSNIAE 297

Query: 296 ---------------YDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDN 340
                             E I N+I V  DP+EF+KL+LVWGKPRQPP+G +E+T  LD+
Sbjct: 298 EKHNEIRHSYSENDLLKDEEISNDIDVPADPLEFNKLSLVWGKPRQPPMGHKEFTALLDS 357

Query: 341 EGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKR 400
           EGRV++S ALR+R+FYGG++H+LRREVW FLLGYYAYDSTYAEREYLR +K+ EY  +K+
Sbjct: 358 EGRVVESKALRERVFYGGIEHQLRREVWPFLLGYYAYDSTYAEREYLRSVKRMEYATLKQ 417

Query: 401 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNF 460
           QWQSISPEQA+RFTK+RERKGLIDKDVVRTDR+  +++GDDN +V+ +RDILLTYSFYNF
Sbjct: 418 QWQSISPEQAKRFTKYRERKGLIDKDVVRTDRAFEYYEGDDNLHVNSMRDILLTYSFYNF 477

Query: 461 DLGYCQVIT 469
           DLGYCQ ++
Sbjct: 478 DLGYCQGMS 486

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
DICTYBASE|DDB_G0288811	829	DDB_G0288811 "putative GTPase	0.549	0.313	0.360	9.4e-61
UNIPROTKB|F1NBY5	667	TBC1D15 "Uncharacterized prote	0.300	0.212	0.485	3.2e-49
UNIPROTKB|F1SH24	674	TBC1D15 "Uncharacterized prote	0.300	0.210	0.485	3e-48
UNIPROTKB|F1PGI0	682	TBC1D15 "Uncharacterized prote	0.300	0.208	0.485	6.8e-48
UNIPROTKB|J9NYJ6	674	TBC1D15 "Uncharacterized prote	0.300	0.210	0.485	9.5e-48
UNIPROTKB|Q8TC07	691	TBC1D15 "TBC1 domain family me	0.300	0.205	0.492	1e-47
UNIPROTKB|J3KNI9	682	TBC1D15 "TBC1 domain family me	0.300	0.208	0.492	1.1e-47
UNIPROTKB|F1N090	675	TBC1D15 "Uncharacterized prote	0.300	0.210	0.485	2.1e-47
UNIPROTKB|J9P0U9	648	TBC1D17 "Uncharacterized prote	0.298	0.217	0.475	5.6e-47
UNIPROTKB|Q9HA65	648	TBC1D17 "TBC1 domain family me	0.424	0.310	0.385	6.2e-47

DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 433 (157.5 bits), Expect = 9.4e-61, Sum P(3) = 9.4e-61
 Identities = 102/283 (36%), Positives = 159/283 (56%)

Query:   205 DSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTS 264
             D+  N N   +N    +++++ S       ++A    R+IS  + + F+ VT+ A+    
Sbjct:   363 DNENNSNNTNSNNNSNNNANTGSLSTSPTNKRALK--REISSSIFDNFAKVTQLAKSAQK 420

Query:   265 QLFRENHSNGFGAFEKKFDSQSALDFD---HKASYDTETIVNE----IPVAPD---PVEF 314
              +F E        F     S+S++  +     A+     I+NE    +  + D   P   
Sbjct:   421 NIFEEPAKRIDNHFRNLIGSKSSIGSNLSPQNANNQYFDILNESGSSLNASSDYFTPFNI 480

Query:   315 DKL--TLVWGKPRQP--PLGSEEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVW 368
               L  ++  G  R+   P+   EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW
Sbjct:   481 SSLNFSIELGANRRECNPMSPSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVW 540

Query:   369 AFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVV 428
              FLLG Y++DSTY+ RE ++  K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+
Sbjct:   541 PFLLGVYSFDSTYSSREVVKYEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVI 600

Query:   429 RTDR-SVTFFDGDD----NPNVHLLRDILLTYSFYNFDLGYCQ 466
             RTDR    F  G+D    N N+ L+RD+LLTYSF+NFD+GY Q
Sbjct:   601 RTDRLHPMFIQGEDDIDSNENLRLMRDVLLTYSFFNFDIGYVQ 643

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 3.2e-49, Sum P(3) = 3.2e-49
 Identities = 69/142 (48%), Positives = 102/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR+E W FLLGY+ ++ST  ER
Sbjct:   294 RREPVSIEEWTKNMDSEGRILNVDYIKQSIFKGGLCHTLRKEAWKFLLGYFPWNSTKEER 353

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+S+S EQ +R ++ R+ + LI+KDV RTDR+  F++G+DNP 
Sbjct:   354 ANLQKRKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGEDNPG 413

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   414 LILLHDILMTYCMYDFDLGYVQ 435

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 382 (139.5 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
 Identities = 69/142 (48%), Positives = 101/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct:   296 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 355

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+S+S EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct:   356 TELQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 415

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   416 LILLHDILMTYCMYDFDLGYVQ 437

GO:0005739 "mitochondrion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 6.8e-48, Sum P(3) = 6.8e-48
 Identities = 69/142 (48%), Positives = 101/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct:   304 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 363

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+S+S EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct:   364 TQLQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 423

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   424 LILLHDILMTYCMYDFDLGYVQ 445

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 9.5e-48, Sum P(3) = 9.5e-48
 Identities = 69/142 (48%), Positives = 101/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct:   296 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 355

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+S+S EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct:   356 TQLQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 415

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   416 LILLHDILMTYCMYDFDLGYVQ 437

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
 Identities = 70/142 (49%), Positives = 101/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct:   313 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 372

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+SIS EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct:   373 TQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 432

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   433 LILLHDILMTYCMYDFDLGYVQ 454

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0032313 "regulation of Rab GTPase activity" evidence=ISS

GO:0005097 "Rab GTPase activator activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.1e-47, Sum P(3) = 1.1e-47
 Identities = 70/142 (49%), Positives = 101/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct:   304 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 363

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+SIS EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct:   364 TQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 423

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   424 LILLHDILMTYCMYDFDLGYVQ 445

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
 Identities = 69/142 (48%), Positives = 101/142 (71%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct:   297 RREPVSLEEWTKNVDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 356

Query:   385 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 444
               L+  K  EY  +K QW+S+S EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct:   357 TQLQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 416

Query:   445 VHLLRDILLTYSFYNFDLGYCQ 466
             + LL DIL+TY  Y+FDLGY Q
Sbjct:   417 LILLHDILMTYCMYDFDLGYVQ 438

GO:0005739 "mitochondrion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|J9P0U9 TBC1D17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 5.6e-47, Sum P(3) = 5.6e-47
 Identities = 68/143 (47%), Positives = 93/143 (65%)

Query:   325 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 384
             R PP+  EEWT  +  EGR+ +   L+ RIF GG+   LRR+ W FLLGY +++ + AE 
Sbjct:   277 RAPPVTEEEWTHHVGPEGRLQEVPVLKARIFSGGLSPGLRRDAWKFLLGYLSWEGS-AEE 335

Query:   385 EYLRCIKKS-EYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP 443
                   KK+ EY  +K QW+S+SPEQ RR +     + LI++DV RTDR+  F++G +NP
Sbjct:   336 HKAHVRKKTDEYFRMKLQWKSVSPEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENP 395

Query:   444 NVHLLRDILLTYSFYNFDLGYCQ 466
              + LL DILLTY  Y+FDLGY Q
Sbjct:   396 GLGLLNDILLTYCMYHFDLGYVQ 418

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q9HA65 TBC1D17 "TBC1 domain family member 17" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 6.2e-47, Sum P(3) = 6.2e-47
 Identities = 84/218 (38%), Positives = 120/218 (55%)

Query:   265 QLFRENHSNGFGAFEKKFDSQSALDFDHKASY-------DTETIVNEIPVAPD--PVE-F 314
             QLF ++ SN    F +   S +   F    ++         E   +++P  PD  P   F
Sbjct:   202 QLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPQPEGAASDLPPPPDDEPEPGF 261

Query:   315 DKLTLVWGKPRQ-----PPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWA 369
             + ++ V   PR      PP+  EEW   +  EGR+     L+ RIF GG+   LRRE W 
Sbjct:   262 EVISCVELGPRPTVERGPPVTEEEWARHVGPEGRLQQVPELKNRIFSGGLSPSLRREAWK 321

Query:   370 FLLGYYAYDSTYAERE-YLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVV 428
             FLLGY +++ T  E + ++R  K  EY  +K QW+S+SPEQ RR +     + LI++DV 
Sbjct:   322 FLLGYLSWEGTAEEHKAHIRK-KTDEYFRMKLQWKSVSPEQERRNSLLHGYRSLIERDVS 380

Query:   429 RTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
             RTDR+  F++G +NP + LL DILLTY  Y+FDLGY Q
Sbjct:   381 RTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQ 418

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
pfam12068	210	pfam12068, DUF3548, Domain of unknown function (DU	2e-18
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	2e-13
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	3e-12
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	6e-07

>gnl|CDD|192931 pfam12068, DUF3548, Domain of unknown function (DUF3548)

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 47/195 (24%)

Query: 40  SEGAELVYLKDNVTIHPT----QFASERISGRLKLIKQGSSLFMTWIP-----------Y 84
            E  ++V+ K+ V +H +          I G ++++++   +F+ W P            
Sbjct: 1   PESYKVVFEKEGVFLHTSAKKGSDQDTLIPGTIRIVEKDGEVFLEWKPLEETADASNILC 60

Query: 85  KGQNSNTRLSEKDR---------NLYTIR----------------------AVPFTEVRS 113
             ++S++ + E D           + T+                       +    +++S
Sbjct: 61  AKKDSSSVVREPDHDPSYEPDWAMISTVSFKRKVHANGPGEPVNEQSKWAFSFSLADLKS 120

Query: 114 IRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVND 173
           IRR+ P  GW Y+++ L  G + PPL+F+ GG REFL +++++++L  S +D+ +FLV  
Sbjct: 121 IRRNKPGLGWSYLVLTLKDGTSLPPLHFHQGGTREFLKSLQKYIILAESPQDSRLFLVVP 180

Query: 174 FD-NRLQRTLSSLEL 187
                L ++ S+L L
Sbjct: 181 QSSKALSQSFSNLLL 195

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 184 to 216 amino acids in length. This domain is found associated with pfam00566. This domain is found at the N-terminus of GYP7 proteins. Length = 210

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 355 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 414
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 415 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQ
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQ 93

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 23/106 (21%)

Query: 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 420
             LR EVW  LLG  +             + K E    + Q                   
Sbjct: 1   DSLRGEVWKLLLGNLSESKQRDSVSQYSKLLKLEDSPDEEQ------------------- 41

Query: 421 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
             I+KDV RT     FF   +      LR IL  YS YN D+GYCQ
Sbjct: 42  --IEKDVPRTFPHHFFFK--NGEGQQQLRRILKAYSIYNPDVGYCQ 83

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 405
             + LR+ I  G + ++LR +VW FLLG   +D       Y R +               
Sbjct: 201 QLSKLRELIRKG-IPNELRGDVWEFLLGIG-FDLDKNPGLYERLLN-------------- 244

Query: 406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYC 465
                      +E    I+KD+ RT    + F  + +     LR +L  YS YN ++GY 
Sbjct: 245 --LHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYV 302

Query: 466 Q 466
           Q
Sbjct: 303 Q 303

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG1648	813	consensus Uncharacterized conserved protein, conta	100.0
PF12068	213	DUF3548: Domain of unknown function (DUF3548); Int	100.0
KOG2224	781	consensus Uncharacterized conserved protein, conta	100.0
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	99.82
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	99.8
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	99.78
KOG2223	586	consensus Uncharacterized conserved protein, conta	99.66
COG5210	496	GTPase-activating protein [General function predic	99.65
KOG4567	370	consensus GTPase-activating protein [General funct	99.63
KOG2222	848	consensus Uncharacterized conserved protein, conta	99.5
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.37
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	99.28
KOG4347	671	consensus GTPase-activating protein VRP [General f	99.26
KOG2221	267	consensus PDZ-domain interacting protein EPI64, co	99.16
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.14
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.03
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	99.03
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	98.2
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	97.96
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.51
KOG2595	395	consensus Predicted GTPase activator protein [Sign	96.17

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]

Probab=100.00  E-value=5.1e-49  Score=398.70  Aligned_cols=379  Identities=18%  Similarity=0.243  Sum_probs=291.6

Q ss_pred             CCcEEEEeeCceEEccCCcccCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeee--eeCCCeeEEEeec
Q 012006           41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT  118 (473)
Q Consensus        41 ~~~~lly~K~~V~vhpt~~~~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~s--v~ls~I~SI~~~~  118 (473)
                      ++++|||+||+|.|+|.. +++.+||||+|+|-...++|+|+||++|+++...++.+++.||.++  |++.||.+||||+
T Consensus       250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ  328 (813)
T KOG1648|consen  250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ  328 (813)
T ss_pred             chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence            678999999999999986 8999999999999999999999999999999998999999999765  9999999999999


Q ss_pred             CCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhcccccCccccccC
Q 012006          119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAVSIA  194 (473)
Q Consensus       119 p~~G~~yiii~~~dG~~~PpL~F~~GG~-~~FL~~L~~~~~l~rS~~dp~l~Lvn~~---~~~L~r~~s~~~~~~~~~~~  194 (473)
                      ......+++||.+||++.|||+|+.||| ..||+||++ ++|++.++||+||...+.   .+.|++.-+....+..-.-.
T Consensus       329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKRS~~~s~~~~~~~~  407 (813)
T KOG1648|consen  329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKRSTAVSNPAMEMGT  407 (813)
T ss_pred             ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhcCcccCCchhhcCc
Confidence            9866689999999999999999999999 799999988 999999999999999764   36776653222111100112


Q ss_pred             CCCCCCcccC-CCCCcccccccCCC---------------CCCCCCCccccccc---ccCcCCChhhhhHHHHHHhHHHH
Q 012006          195 SGSSTPVSIG-DSPTNVNLERTNGG---------------LGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSLV  255 (473)
Q Consensus       195 ~~~~~~~~~~-~~~~~~~~~~~d~~---------------~~~~~~s~~~~~~~---~~~~~~d~~~~~~~~~l~~~s~v  255 (473)
                      ...++||+++ ++++..+....|-.               ++..+.+|+...+.   +.+++..++ .+...++     |
T Consensus       408 ~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll-----C  481 (813)
T KOG1648|consen  408 GRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL-----C  481 (813)
T ss_pred             ccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----H
Confidence            2357899886 55555443322210               12222334333221   122333344 3456776     9


Q ss_pred             HHHHHHHHHHhhhccCCCCCcccccccccccccccCcCccccccccc---cCCCC-CCCcccccccccccCCCCCCCCCH
Q 012006          256 TKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---NEIPV-APDPVEFDKLTLVWGKPRQPPLGS  331 (473)
Q Consensus       256 T~~~r~~~~~~~~~~~~~g~~~~~r~~~~~~~~d~~~~~~~v~e~~~---~~~~l-~~~~~e~~~~~~~~~~~r~~plt~  331 (473)
                      .+|.+|+++++|     |||.+|||++            ++|+++..   +...+ |++|.+           ....||+
T Consensus       482 ~sMk~QI~sRAF-----YGWLaycRHL------------sTvRTHLsaLV~h~~~~pD~pcd-----------a~~glt~  533 (813)
T KOG1648|consen  482 QSMKNQIMSRAF-----YGWLAYCRHL------------STVRTHLSALVDHKTLIPDDPCD-----------ASAGLTE  533 (813)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHH------------HHHHHHHHHHhcccccCCCCCCC-----------ccccccH
Confidence            999999999999     9999998764            34444432   22222 334432           2568999


Q ss_pred             HHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhh
Q 012006          332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR  411 (473)
Q Consensus       332 ~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~  411 (473)
                      +.|+++...  ..+.+-++.+..++||+....|+-+|+++++.+...++..+-+.........|.+..-.|.        
T Consensus       534 ~~W~qy~~d--~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~--------  603 (813)
T KOG1648|consen  534 KFWKQYRAD--PTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF--------  603 (813)
T ss_pred             HHHHHHhcC--CchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH--------
Confidence            999999864  2444556666667999999999999999999999888887777777777888987665554        


Q ss_pred             hhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       412 ~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                           +-..++|+||+.|++++..||.+.++  ++. +++.++|.-.|-+-||.|||+||+|
T Consensus       604 -----~~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~  657 (813)
T KOG1648|consen  604 -----RANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLA  657 (813)
T ss_pred             -----hhheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccC
Confidence                 34567999999999999999998665  566 8899999999999999999999986

>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=2.8e-38  Score=300.11  Aligned_cols=148  Identities=31%  Similarity=0.653  Sum_probs=129.2

Q ss_pred             CcEEEEeeCceEEccCCcc----cCCCCceEEEEEeCCeeEEEEEecCCCCC-Cc-------------------------
Q 012006           42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNS-NT-------------------------   91 (473)
Q Consensus        42 ~~~lly~K~~V~vhpt~~~----~d~I~G~LsL~~~~~~~~l~W~P~~~~~~-~~-------------------------   91 (473)
                      .++|||+|+||||||++..    +++|||||+|++++++++|+|+|.++..+ +.                         
T Consensus         3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~   82 (213)
T PF12068_consen    3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP   82 (213)
T ss_pred             cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence            5799999999999999977    79999999999999999999999887411 10                         


Q ss_pred             -c--cc----------------ccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHH
Q 012006           92 -R--LS----------------EKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT  152 (473)
Q Consensus        92 -~--~~----------------~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~GG~~~FL~~  152 (473)
                       +  .+                ..+....|+|+|||+||+||++++|++|||||+|+++||+.+||||||+||.++||++
T Consensus        83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~  162 (213)
T PF12068_consen   83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS  162 (213)
T ss_pred             CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence             0  00                0001123479999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccccCCCCceEEEeCCc-hhhhhhcccccCcc
Q 012006          153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR  189 (473)
Q Consensus       153 L~~~~~l~rS~~dp~l~Lvn~~~-~~L~r~~s~~~~~~  189 (473)
                      |++|+.|.||+.|+++|||++.. ++|+++|+.|++++
T Consensus       163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~  200 (213)
T PF12068_consen  163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD  200 (213)
T ss_pred             HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence            99999999999999999999987 89999999887663

This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=274.07  Aligned_cols=145  Identities=41%  Similarity=0.781  Sum_probs=131.4

Q ss_pred             CCCCHHHHHH-hhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh-c
Q 012006          327 PPLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-S  404 (473)
Q Consensus       327 ~plt~~~W~~-~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~-~  404 (473)
                      ..|+-..|-. .++..|.+.+.-+||+.||.|||+.++|++||+|||.+|...||.++|++++..++.+|.++.++-. +
T Consensus       403 kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlys  482 (781)
T KOG2224|consen  403 KKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYS  482 (781)
T ss_pred             hhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3556667766 7888899988889999999999999999999999999999999999999999999999999876554 6


Q ss_pred             CChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          405 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       405 ~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      +++++...|  |+...-.++|||.||||+++||.+++|||.+.|+|||+.||+|||.+||.|||+||+|
T Consensus       483 mspeeh~~f--wknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdlla  549 (781)
T KOG2224|consen  483 MSPEEHIAF--WKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLA  549 (781)
T ss_pred             CCHHHHHHH--HhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcc
Confidence            788776666  6666778999999999999999999999999999999999999999999999999987

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.2e-20  Score=195.70  Aligned_cols=121  Identities=26%  Similarity=0.338  Sum_probs=94.2

Q ss_pred             HHHHHHhhhcc-------CCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh
Q 012006          331 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ  403 (473)
Q Consensus       331 ~~~W~~~~~~~-------g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~  403 (473)
                      ...|..++..+       --+...+++|+.| |+|||+++|+.||..+.|.+.           ....++.|+++++.-.
T Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~~~  190 (436)
T KOG2058|consen  123 QLRWELELQSNIKLHSPNDFPPRSDELKRLI-RKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRKGD  190 (436)
T ss_pred             HHHHHHHhhhhhcccccccccCCcHHHHHHH-HcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhcCC
Confidence            35566665542       1124578999999 999999999999999999421           1122788888875422


Q ss_pred             cCChhHhhhhhhccccccccccccccCCCCC-cccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          404 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       404 ~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~-~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      ...          .....+|+.|+.||||++ +.|..++..++..|+|||+||++|||.||||||||+|+|
T Consensus       191 ~~~----------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAa  251 (436)
T KOG2058|consen  191 EKK----------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAA  251 (436)
T ss_pred             Ccc----------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Confidence            110          023568999999999999 899988887789999999999999999999999999986

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=99.80  E-value=6.5e-20  Score=173.27  Aligned_cols=99  Identities=29%  Similarity=0.481  Sum_probs=83.5

Q ss_pred             cCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccccccccccCCCCCc
Q 012006          356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT  435 (473)
Q Consensus       356 ~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~  435 (473)
                      ++|||+++|++||+.++|+.+...+         ..+..|.++++++......          ...+|++||.||+|+++
T Consensus         2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~~----------~~~~I~~Dv~Rt~~~~~   62 (199)
T smart00164        2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDKS----------IVHQIEKDLRRTFPEHS   62 (199)
T ss_pred             CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCChh----------hHHHHhcccCCCCCCch
Confidence            7899999999999999999864321         1367999998776432211          24589999999999999


Q ss_pred             ccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          436 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       436 ~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      +|+..++++++.|++||.+|+.+||++||||||++|+|
T Consensus        63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~  100 (199)
T smart00164       63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAA  100 (199)
T ss_pred             hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHH
Confidence            99987778899999999999999999999999999986

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=99.78  E-value=7e-20  Score=194.70  Aligned_cols=149  Identities=48%  Similarity=0.802  Sum_probs=132.7

Q ss_pred             CCCCCCCHHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh
Q 012006          324 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ  403 (473)
Q Consensus       324 ~r~~plt~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~  403 (473)
                      .+.+.++.++|......+|++......+..+|++|+-+.+|+++|++++++++|+.+..||..+... ...|.+++.+|.
T Consensus       143 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~  221 (488)
T KOG2197|consen  143 NRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWS  221 (488)
T ss_pred             CCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhhe
Confidence            4566689999999998889886666666699999998899999999999999999999999888777 999999999999


Q ss_pred             cCChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       404 ~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      .....+......+.+....|.|||.||||.+.+|.+++++++..|.+||.+|++||+++||||||+|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDlls  291 (488)
T KOG2197|consen  222 STSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLS  291 (488)
T ss_pred             eccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcC
Confidence            9877766544446677789999999999999999998888899999999999999999999999999975

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.66  E-value=5.2e-17  Score=164.45  Aligned_cols=128  Identities=22%  Similarity=0.359  Sum_probs=93.8

Q ss_pred             HHHHH-hhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHH-----hhcC
Q 012006          332 EEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ-----WQSI  405 (473)
Q Consensus       332 ~~W~~-~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~-----w~~~  405 (473)
                      ..|.. ++-+|..+.....++.++ +.|||+.+|++||-...|.. .+.|           .+.|...+.+     |+..
T Consensus       275 ~vW~~eILpnWe~m~~SrR~relW-wQGiP~~VRGkvW~laIGNe-l~it-----------~elfd~~la~Aker~ak~~  341 (586)
T KOG2223|consen  275 NVWENEILPNWEDMLKSRRVRELW-WQGIPPSVRGKVWSLAIGNE-LNIT-----------YELFDIALARAKEREAKSL  341 (586)
T ss_pred             HHHHHHhccchHHHHhhHHHHHHH-HccCChhhcchhhHhhhCcc-cccC-----------HHHHHHHHHHHHHHHHHHH
Confidence            45654 455566666778888887 99999999999999999983 2333           2334333222     3332


Q ss_pred             ChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       406 ~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      .+.....-...+....+|+.|+.||||+..+|+. ++|....|..||.+|++|.||+||||||++|+|
T Consensus       342 aeq~~~sa~~re~sv~~i~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaA  408 (586)
T KOG2223|consen  342 AEQMSNSAADREASVELIKLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAA  408 (586)
T ss_pred             HhhcccchhhhhcchhheeechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHH
Confidence            2111001122345677999999999999999996 678899999999999999999999999999986

>COG5210 GTPase-activating protein [General function prediction only]

Probab=99.65  E-value=1.4e-16  Score=171.29  Aligned_cols=129  Identities=26%  Similarity=0.385  Sum_probs=101.8

Q ss_pred             CCCCHHHHHHhhhccCC-c--CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh
Q 012006          327 PPLGSEEWTTFLDNEGR-V--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ  403 (473)
Q Consensus       327 ~plt~~~W~~~~~~~g~-~--~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~  403 (473)
                      .+.....|.++++..+. .  ....+++.+| +.|||+++|+.||.+++|++++..          .....|..+.....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~----------~~~~~y~~~~~~~~  247 (496)
T COG5210         179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLD----------KNPGLYERLLNLHR  247 (496)
T ss_pred             hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhc----------cCchHHHHHHHHHH
Confidence            56678889999988776 2  5778999999 778999999999999999987543          24556666554322


Q ss_pred             cCChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       404 ~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      .....       .....++|++||.||+|.+..|..+.+.+.+.|++||.+|++|||++|||||||+|+|
T Consensus       248 ~~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a  310 (496)
T COG5210         248 EAKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAA  310 (496)
T ss_pred             hcCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHH
Confidence            21110       0024679999999999999999987776556799999999999999999999999986

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=99.63  E-value=2.8e-16  Score=153.98  Aligned_cols=138  Identities=27%  Similarity=0.376  Sum_probs=98.9

Q ss_pred             HHHHhhhccCCcCChHHHHHHhhcCCCC--hhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhc------
Q 012006          333 EWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQS------  404 (473)
Q Consensus       333 ~W~~~~~~~g~~~~~~~lk~~If~~GIp--~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~------  404 (473)
                      ..+..+..-...++.+++|+.. ..|+|  .++|+.+|+.|||++|.+.+.+  ....++++..|..++.+-..      
T Consensus        11 ~~edvl~~~~~~id~kelr~~~-~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~~   87 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKELRKLC-FYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKKD   87 (370)
T ss_pred             hHHHhhccccchhhHHHHHHHh-hcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCccccc
Confidence            3444454434447889999998 67898  6899999999999999766554  44566778899888765321      


Q ss_pred             ----CCh--------------hHhhhhhhccccccccccccccCCCCCcccCCCCC-h----------------------
Q 012006          405 ----ISP--------------EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN-P----------------------  443 (473)
Q Consensus       405 ----~~~--------------~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~-~----------------------  443 (473)
                          +..              ..+..|-+-.+...||+|||.||.|...||..... |                      
T Consensus        88 ~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~  167 (370)
T KOG4567|consen   88 NSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL  167 (370)
T ss_pred             cccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc
Confidence                100              00112222235677999999999999999986321 1                      


Q ss_pred             --hHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          444 --NVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       444 --~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                        ......+||+.||..||.||||||||+|+|
T Consensus       168 gl~~~~~erilfiyAKLNpGi~YVQGMNEIla  199 (370)
T KOG4567|consen  168 GLTRFAAERILFIYAKLNPGIGYVQGMNEILA  199 (370)
T ss_pred             chhhhHHHHHHHHHhhcCCcchHHhhhHHHhh
Confidence              112357899999999999999999999987

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=99.50  E-value=2.3e-14  Score=146.58  Aligned_cols=112  Identities=25%  Similarity=0.386  Sum_probs=93.1

Q ss_pred             CCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccc
Q 012006          342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG  421 (473)
Q Consensus       342 g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~  421 (473)
                      |-....++++.++-.||||+++|..+|+.|.|...          .++.....|..+.+++......          .-.
T Consensus       154 ~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk~~----------~~~  213 (848)
T KOG2222|consen  154 GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDKLM----------IGK  213 (848)
T ss_pred             ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhcccccc----------hhH
Confidence            44567889999998889999999999999999842          2233456788887766542211          235


Q ss_pred             ccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       422 ~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      ||+||+.|+.|++..|..+++.++..|++||.+.++.-|++||||||.-|+|
T Consensus       214 qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva  265 (848)
T KOG2222|consen  214 QIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVA  265 (848)
T ss_pred             HHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHH
Confidence            8999999999999999999999999999999999999999999999998875

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=99.37  E-value=2.6e-13  Score=128.82  Aligned_cols=98  Identities=34%  Similarity=0.518  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccccccccccCCCCCcccCCC
Q 012006          361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD  440 (473)
Q Consensus       361 ~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~  440 (473)
                      +++|+.||+.|+|..+    ..         ...|...+.++...............+...+|++||.||+++...+.  
T Consensus         1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~--   65 (214)
T PF00566_consen    1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK--   65 (214)
T ss_dssp             -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred             CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence            3689999999999976    11         11121111211111111111111123446789999999999554444  


Q ss_pred             CChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          441 DNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       441 ~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      ...++..|.+||.+|+.+||++||||||++|+|
T Consensus        66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~   98 (214)
T PF00566_consen   66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAA   98 (214)
T ss_dssp             THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHH
T ss_pred             hcchHHHHHHHHHHhccccccccccchhhhhhh
Confidence            456789999999999999999999999999975

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=2.4e-12  Score=130.87  Aligned_cols=120  Identities=26%  Similarity=0.369  Sum_probs=98.7

Q ss_pred             cCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccccc
Q 012006          344 VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLI  423 (473)
Q Consensus       344 ~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~I  423 (473)
                      .++.++||+.. ++|||...|+.+|++|+|+.|.++  +-|+...+.++.+|..++.++-.........    .+..++|
T Consensus       175 ~id~~~Lr~l~-w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~----~d~~rQI  247 (484)
T KOG1092|consen  175 IIDLEKLRKLC-WNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTNGDED----QDTWRQI  247 (484)
T ss_pred             cccHHHHHHHc-cCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCCcccc----Ccccccc
Confidence            36778888877 899999999999999999998765  4567778889999999998876543321111    2345799


Q ss_pred             ccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006          424 DKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI  472 (473)
Q Consensus       424 ekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~  472 (473)
                      ..|+.||.|+.++|..+-  -++.+.+||..++.++|..|||||.|||+
T Consensus       248 ~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlv  294 (484)
T KOG1092|consen  248 PIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLV  294 (484)
T ss_pred             ccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeee
Confidence            999999999999998633  36899999999999999999999999986

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=99.26  E-value=5.7e-12  Score=134.07  Aligned_cols=119  Identities=23%  Similarity=0.395  Sum_probs=97.8

Q ss_pred             HHHHHHhhhccCCcC---ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCCh
Q 012006          331 SEEWTTFLDNEGRVM---DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP  407 (473)
Q Consensus       331 ~~~W~~~~~~~g~~~---~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~  407 (473)
                      +..|+++|..+|+.+   ...++++.+ +.|+|...|+++|..+.|..          .-+..+.++|.++.......  
T Consensus       173 ~k~W~~~f~~~G~~~~~~qt~~~~Klv-~~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~G~--  239 (671)
T KOG4347|consen  173 EKFWKKYFIKDGPNMNQIQTILLRKLL-YNGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVTGK--  239 (671)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHH-HHhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhcccCC--
Confidence            466999999999975   467899999 89999999999999999983          23455689999887654331  


Q ss_pred             hHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006          408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI  472 (473)
Q Consensus       408 ~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~  472 (473)
                              ..-....|++|+.|.-|.|+-|+.+.  +...|++||.+|++-||+|||||-||-++
T Consensus       240 --------~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~  294 (671)
T KOG4347|consen  240 --------RSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVG  294 (671)
T ss_pred             --------cccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHH
Confidence                    11234579999999999999999754  46999999999999999999999999765

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=5.8e-12  Score=118.40  Aligned_cols=119  Identities=23%  Similarity=0.376  Sum_probs=92.6

Q ss_pred             HHHHHHhhhccCCcC--ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChh
Q 012006          331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE  408 (473)
Q Consensus       331 ~~~W~~~~~~~g~~~--~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~  408 (473)
                      +.+|-.++++|...+  ..++|+.+. +.|||+++|+.+|.+|.|.+..          ...++..|..+..+     +.
T Consensus        75 eskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~----------~~~np~~~~~~~~~-----pG  138 (267)
T KOG2221|consen   75 ESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSP----------PPKNPVVFDELGPA-----PG  138 (267)
T ss_pred             HHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCC----------CCCCcchhhhccCC-----CC
Confidence            478999999876543  456788887 9999999999999999998642          22345666554321     11


Q ss_pred             HhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006          409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI  472 (473)
Q Consensus       409 q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~  472 (473)
                      ..       ....-|++|+.|-||.|.+|......+...|+|+|.+|.+|+|+.||||+-.-|+
T Consensus       139 ~p-------~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapia  195 (267)
T KOG2221|consen  139 DP-------KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIA  195 (267)
T ss_pred             CC-------cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHH
Confidence            11       1234799999999999999998877788999999999999999999999966554

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=99.14  E-value=2.8e-11  Score=130.81  Aligned_cols=124  Identities=23%  Similarity=0.347  Sum_probs=92.3

Q ss_pred             HHHHHHhhhccCCc---CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCCh
Q 012006          331 SEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP  407 (473)
Q Consensus       331 ~~~W~~~~~~~g~~---~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~  407 (473)
                      .+.|.+++.. ++.   .+.+.+...+ +.|||.+-|+++|.||.--+          .+.....     .+++-..++.
T Consensus       549 ~~~wek~~e~-~~~~~k~d~ed~~~~l-~~gvprsrrgeiwtflA~q~----------~~~~~l~-----~~kr~~~~p~  611 (948)
T KOG4436|consen  549 IETWEKILER-TRIKIKKDMEDLHSAL-RTGVPRSRRGEIWTFLAEQH----------SLNHALP-----DKKRPPDFPY  611 (948)
T ss_pred             HHHHHHHHHH-hhhcccccHHHHHHHH-HccCchhhhHHHHHHHHHHH----------HHhccCC-----cccCCCCCCh
Confidence            3679999876 555   3778888888 99999999999999997332          1111111     1111111111


Q ss_pred             hHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       408 ~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                        ......+.+..+.|-.|+-||||+|++|+..-++++..|+|+|.+|+..+|++|||||.+++++
T Consensus       612 --~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~g  675 (948)
T KOG4436|consen  612 --KELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAG  675 (948)
T ss_pred             --HHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhh
Confidence              1112224456778999999999999999999899999999999999999999999999999875

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.3e-10  Score=122.03  Aligned_cols=108  Identities=26%  Similarity=0.343  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCCh---------------------hHhhhhhhccccc
Q 012006          362 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP---------------------EQARRFTKFRERK  420 (473)
Q Consensus       362 ~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~---------------------~q~~~~~~~~~~~  420 (473)
                      .+|+.+|+.+||+.|.+.+...-  -....+..|.+++.....-+.                     ..+..|-.-.+..
T Consensus        28 ~~Rgv~Wrl~L~vLp~~~ss~id--~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~  105 (625)
T KOG1091|consen   28 NLRGVRWRLLLGVLPSENSSWID--NLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE  105 (625)
T ss_pred             hhhhHHHHHhheecCCCchhHHH--HHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence            58999999999999976443221  122335666665443221100                     0112221224667


Q ss_pred             cccccccccCCCCC-cccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          421 GLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       421 ~~IekDV~RTd~~~-~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      ..|++||.||||.+ .||+.+..  +.+|++||+.||.-||.+||-|||++|+|
T Consensus       106 ~~i~qDvsRtfPe~~~fFqs~~~--q~mLr~iLl~~~lehp~i~YrQGMHElLA  157 (625)
T KOG1091|consen  106 KTIDQDVSRTFPEHSLFFQSPEV--QGMLRRILLLYALEHPEIGYRQGMHELLA  157 (625)
T ss_pred             HhhcchhhccCcchhhhhcCchh--hHHHHHHHHHHHhhchhhhHHhhhhhhhh
Confidence            88999999999999 78886554  58999999999999999999999999987

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=99.03  E-value=2.2e-10  Score=119.88  Aligned_cols=105  Identities=29%  Similarity=0.407  Sum_probs=76.3

Q ss_pred             ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccccccc
Q 012006          346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK  425 (473)
Q Consensus       346 ~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~Iek  425 (473)
                      ...++..++ ..|||.++|+.+|..+++..        ++...   .........++....+.          ...+| +
T Consensus       134 ~~~~l~~~~-~~gip~~~r~~~W~l~~~~~--------~~~~~---~~~~~l~~~~~~~~~~~----------~~~~~-~  190 (397)
T KOG1102|consen  134 RPLKLSRRV-LVGIPDELRGLVWQLLLYAV--------EESLF---DSLDELYRLQLDEPEPH----------ESEII-R  190 (397)
T ss_pred             cHHHHHHHh-hccccHHHHHHHHHHhcccH--------hhhhh---hhHHHHHHHhhccCCCc----------hhHHH-h
Confidence            456777777 78999999999999999862        01111   11111122222221111          12356 9


Q ss_pred             ccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          426 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       426 DV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      |+.||+|.+..|....+.+++.|.+||.+|++|++++||||||..++|
T Consensus       191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~  238 (397)
T KOG1102|consen  191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAA  238 (397)
T ss_pred             hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhh
Confidence            999999999999988888899999999999999999999999998854

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=98.20  E-value=1.1e-06  Score=94.20  Aligned_cols=85  Identities=35%  Similarity=0.632  Sum_probs=77.2

Q ss_pred             CCCCCCCCHHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHh
Q 012006          323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW  402 (473)
Q Consensus       323 ~~r~~plt~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w  402 (473)
                      +++..+++.+.|...|+++|++.+..++.++|..+||+|++|++||.+|+|+|..+++.++|.+++...+..|.+++.++
T Consensus        42 ~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c  121 (488)
T KOG2197|consen   42 IKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC  121 (488)
T ss_pred             eccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence            46778888999999999999997667777788899999999999999999999999999999999999999999999988


Q ss_pred             hcCCh
Q 012006          403 QSISP  407 (473)
Q Consensus       403 ~~~~~  407 (473)
                      ..+.+
T Consensus       122 ~~~~~  126 (488)
T KOG2197|consen  122 QMMKS  126 (488)
T ss_pred             chhhh
Confidence            87644

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=97.96  E-value=7.9e-06  Score=89.47  Aligned_cols=110  Identities=19%  Similarity=0.293  Sum_probs=84.2

Q ss_pred             CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccccc
Q 012006          345 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID  424 (473)
Q Consensus       345 ~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~Ie  424 (473)
                      ....+|+.+| .+|+|+..|-.+|..|+..-.       +++.  ...+.|.+++..-.    .+++.     ..+..|.
T Consensus       172 ~s~~~l~e~V-e~~~p~~frli~~qlLssatd-------~~q~--~I~e~~sdl~~~s~----~~Ek~-----~~~~~Ir  232 (948)
T KOG4436|consen  172 KSLHKLKELV-EGGIPMHFRLIRWQLLSSATD-------REQA--LIFEDYSDLAPCSS----QQEKE-----LHIGIIR  232 (948)
T ss_pred             hchhhhHHHH-hcCCchHHHHHHHHHhccccc-------chhh--HHHHHHHHHhhhcc----hhhhh-----HHHHHHH
Confidence            4567999999 999999999999999997621       2221  23567777764322    22211     1345799


Q ss_pred             cccccCCCCCcccCCCCCh-------hHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          425 KDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       425 kDV~RTd~~~~~F~~~~~~-------~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      .|+.||.|.|.+|++....       ++..|+|+..+|...+.++|||||=|++++
T Consensus       233 rdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~G  288 (948)
T KOG4436|consen  233 RDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVG  288 (948)
T ss_pred             HHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHH
Confidence            9999999999999975544       689999999999999999999999777653

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.51  E-value=0.00013  Score=77.70  Aligned_cols=103  Identities=19%  Similarity=0.180  Sum_probs=73.9

Q ss_pred             CCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccc
Q 012006          342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG  421 (473)
Q Consensus       342 g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~  421 (473)
                      |-......+.+.- ++++|+-.|+-+|..||++-             ......|..+- +..+.            ...+
T Consensus       340 g~~~k~~qI~r~a-~vdvpp~~R~~iW~aLL~l~-------------e~~~a~y~~ID-k~Ts~------------~tdr  392 (725)
T KOG1093|consen  340 GYPKKRLQILREA-YVDVPPLYRGFIWAALLQLE-------------ENHTAFYTLID-KGTSH------------STDR  392 (725)
T ss_pred             cchHHHHHHHHHh-ccCCChhHhHHHHHHHhcCc-------------cccchhhhhhh-cCCCC------------cchh
Confidence            4444444555555 78999999999999999883             22345565442 11111            2345


Q ss_pred             ccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       422 ~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      +||.|+.|+..--...+.+  .++++|+++|.+++..+|..-|-||.--|+|
T Consensus       393 qievdiprchQyd~~lsSp--~~~r~lrRvLkawv~~s~~fvywqgldsLa~  442 (725)
T KOG1093|consen  393 QIEVDIPRCHQYDELLSSP--KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAA  442 (725)
T ss_pred             hhhcccchhhhcccccCCH--HHHHHHHHHHHHHHhcCcceeecCCChhhhh
Confidence            8999999997766555543  3579999999999999999999999876654

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=96.17  E-value=0.0031  Score=63.76  Aligned_cols=101  Identities=21%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             CChHHHHHHhh-cCC-CChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccc
Q 012006          345 MDSNALRKRIF-YGG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL  422 (473)
Q Consensus       345 ~~~~~lk~~If-~~G-Ip~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~  422 (473)
                      .+.+.|+..-. -+| +.+++|+.||+-|+|+---.-.           ...|....+               -.+-.+|
T Consensus        46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~-----------~~~~~~~~q---------------~hkd~nQ   99 (395)
T KOG2595|consen   46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD-----------ATSTLTPVQ---------------KHKDYNQ   99 (395)
T ss_pred             ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc-----------ccccCChhh---------------hCcccce
Confidence            46677775542 223 4789999999999997321100           111111110               0112458


Q ss_pred             cccccccCCCCCcccCCCCC---hhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006          423 IDKDVVRTDRSVTFFDGDDN---PNVHLLRDILLTYSFYNFDLGYCQVITSNI  472 (473)
Q Consensus       423 IekDV~RTd~~~~~F~~~~~---~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~  472 (473)
                      +..||.|++...+-=. +.+   ..+..|..++.---..||.+-|-||.+||+
T Consensus       100 V~LDv~RSl~rfppg~-p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~  151 (395)
T KOG2595|consen  100 VILDVERSLGRFPPGI-PKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIV  151 (395)
T ss_pred             EEEehhhhhccCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHH
Confidence            9999999987643100 111   123445544444445689999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	4e-29
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	8e-29
2qq8_A	334	TBC1 domain family member 14; structural genomics	7e-15
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	6e-13
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	7e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	1e-06

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score =  117 bits (294), Expect = 4e-29
 Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L  +  +++   LR +I + G+    R  VW  L+GY   ++    +E     K
Sbjct: 9   SKFDNIL-KDKTIINQQDLR-QISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRK 64

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           + EY +  +   S       + ++       I+ D+ RT+  +  +      N   L+ I
Sbjct: 65  RKEYRDSLKHTFS------DQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 116

Query: 452 LLTYSFYNFDLGYCQ 466
           L  ++  +   GY Q
Sbjct: 117 LYLWAIRHPASGYVQ 131

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score =  115 bits (289), Expect = 8e-29
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 13/135 (9%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
           +++   L   G   D   LR+  +  G+   +R   W  L GY   +     R      K
Sbjct: 27  DKFKQLL--AGPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRK 81

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           + EY      +     ++       ++    I  D+ R                 +   I
Sbjct: 82  QKEYFAFIEHYYDSRNDEV-----HQDTYRQIHIDIPRMSPEALIL---QPKVTEIFERI 133

Query: 452 LLTYSFYNFDLGYCQ 466
           L  ++  +   GY Q
Sbjct: 134 LFIWAIRHPASGYVQ 148

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score = 74.5 bits (183), Expect = 7e-15
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 334 WTTFLDNEGRVM-DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKK 392
           W   +      M  S  +R    + G+   +R +VW+  +G     +   E   +   + 
Sbjct: 24  WNNEILPNWETMWCSRKVRDLW-WQGIPPSVRGKVWSLAIG--NELNITHELFDICLARA 80

Query: 393 SEYENIKRQWQSISPEQARRFTKFRERK--GLIDKDVVRTDRSVTFFDGDDNPNVHLLRD 450
            E         S    +   F+         LI  D+ RT  ++  F     P   +L  
Sbjct: 81  KERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQ-QGGPYHDMLHS 139

Query: 451 ILLTYSFYNFDLGYCQ 466
           IL  Y+ Y  D+GY Q
Sbjct: 140 ILGAYTCYRPDVGYVQ 155

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 31/137 (22%), Positives = 45/137 (32%), Gaps = 28/137 (20%)

Query: 332 EEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRC 389
             W   L      + +    L   +   GV   LR EVW  L G   +D+      Y   
Sbjct: 6   YSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAG--CHDNQAMLDRYRIL 62

Query: 390 IKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLR 449
           I K                          ++ +I +D+ RT  +  +F          L 
Sbjct: 63  ITKDS-----------------------AQESVITRDIHRTFPAHDYFKDTGGDGQESLY 99

Query: 450 DILLTYSFYNFDLGYCQ 466
            I   YS Y+ D+GYCQ
Sbjct: 100 KICKAYSVYDEDIGYCQ 116

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score = 68.7 bits (168), Expect = 7e-13
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 332 EEWTTFLDNEGRVM---DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLR 388
             W   L   GR     D   +   +   GV    R E+W FL   +          +L+
Sbjct: 31  TVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQF----------HLK 79

Query: 389 CIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLL 448
               S+ +     ++ +         +   ++  I  D+ RT  +  +F          L
Sbjct: 80  HQFPSKQQPKDVPYKELL-------KQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSL 132

Query: 449 RDILLTYSFYNFDLGYCQ 466
            +IL  YS  + ++GYCQ
Sbjct: 133 YNILKAYSLLDQEVGYCQ 150

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 73/476 (15%), Positives = 151/476 (31%), Gaps = 119/476 (25%)

Query: 45  LVYLKD--NVTIH------PTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEK 96
           L+ L+   NV I        T  A +         K    +F  W+  K  NS   + E 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEM 201

Query: 97  DRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQH 156
            + L       +T       +         I  + + L            R  L + K +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIK-----LRIHSIQAEL------------RRLLKS-KPY 243

Query: 157 V--LLV-RSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLE 213
              LLV  +V++A     N F+    + L        ++      T      + T+++L+
Sbjct: 244 ENCLLVLLNVQNAKA--WNAFNLSC-KIL--------LTTRFKQVTDFLSAATTTHISLD 292

Query: 214 RTNGGLGHDSHSISQFHGRQKQKAQD-P--ARDISIQVLEKFSLVTKFARETTSQLFREN 270
             +  L  D    S        + QD P      + + L   S++ +  R+  +      
Sbjct: 293 HHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWK 348

Query: 271 HSNGFGAFEKKFD-SQSALDF-DHKASYDTETIVNE-IPVAPDPVEFDKLTLVWGKP--- 324
           H N         + S + L+  +++  +D  ++      + P  +    L+L+W      
Sbjct: 349 HVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTIL----LSLIWFDVIKS 402

Query: 325 ----------------RQPPLGSEEWTT-----FLDNEGRVMDSNALRKRIFYGGVDH-K 362
                           +QP    +E T      +L+ + ++ +  AL + I    VDH  
Sbjct: 403 DVMVVVNKLHKYSLVEKQP----KESTISIPSIYLELKVKLENEYALHRSI----VDHYN 454

Query: 363 LRREV-------------WAFLLGYYAYDSTYAERE------YL--RCIK-KSEYENIKR 400
           + +               +   +G++  +  + ER       +L  R ++ K  +++   
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 401 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLR----DIL 452
                     ++   ++    + D D           D       +L+     D+L
Sbjct: 515 NASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 66/498 (13%), Positives = 145/498 (29%), Gaps = 162/498 (32%)

Query: 39  ESEGAELVY------LKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPY--KGQNSN 90
            S+  E+V       L+ N      +F    I    +   Q S +   +I    +  N N
Sbjct: 72  LSKQEEMVQKFVEEVLRINY-----KFLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDN 123

Query: 91  TRLSEKDRNLYTIRAVPFTEVRS-IRRHTPAFGWQYIIV--VLSSG---LAFPPLYFYTG 144
              +    N+   R  P+ ++R  +    PA   + +++  VL SG   +A         
Sbjct: 124 QVFA--KYNVS--RLQPYLKLRQALLELRPA---KNVLIDGVLGSGKTWVA--------- 167

Query: 145 GVREFLATIKQHVLLVRSVEDANVFLVN--------DFDNRLQRTLSSLELPRAVSIASG 196
                L     + +  +   D  +F +N             LQ+ L  ++          
Sbjct: 168 -----LDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 197 SSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDI-SIQVLEKFS-- 253
           S+  + I        L R                 +  +       ++ + +    F+  
Sbjct: 221 SNIKLRIHS--IQAELRR-------------LLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 254 ---LVT--------KFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV 302
              L+T          +  TT+ +  ++HS      E     +S L       Y  +   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLL-----LKY-LDCRP 315

Query: 303 NEIP---VAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRI--FYG 357
            ++P   +  +P    +L+++    R      + W        + ++ + L   I     
Sbjct: 316 QDLPREVLTTNPR---RLSIIAESIRDGLATWDNW--------KHVNCDKLTTIIESSLN 364

Query: 358 GVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ-----WQSISPEQARR 412
            ++    R+        +         + L     S   +I        W  +       
Sbjct: 365 VLEPAEYRK-------MF---------DRLSVFPPSA--HIPTILLSLIWFDVIKSDVMV 406

Query: 413 FTKFRERKGLIDKDVVRTDRSVTFFD--------GDDNPNVHLLRDILLTYS-------- 456
                 +  L++K     + +++            ++   +H  R I+  Y+        
Sbjct: 407 VVNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSD 462

Query: 457 ----------FYNFDLGY 464
                     FY+  +G+
Sbjct: 463 DLIPPYLDQYFYSH-IGH 479

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 6/104 (5%)

Query: 331 SEEWTTFLD--NEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLR 388
             E    L+   +   +D+  L        +    R  VW  LLG             + 
Sbjct: 22  GVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHE--SHAKVM 79

Query: 389 CIKKSEYENIKRQWQSISPEQAR--RFTKFRERKGLIDKDVVRT 430
             +K +Y ++    + +        +   +     L    + R+
Sbjct: 80  MYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRS 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.9
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.89
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.89
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.88
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.86
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.71
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	98.73
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	96.18
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	95.96
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	89.45

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=220.01  Aligned_cols=140  Identities=21%  Similarity=0.307  Sum_probs=101.6

Q ss_pred             HHHHH-HhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhH
Q 012006          331 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ  409 (473)
Q Consensus       331 ~~~W~-~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q  409 (473)
                      ..+|. .++.+|+.+.+.+++|+++ ++|||+++|+.||++|+|++ +..+.+.++.+.+..+..|..+...+.....+.
T Consensus        21 ~~~W~~~il~~w~~~~~~~~lr~l~-~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d   98 (334)
T 2qq8_A           21 VLTWNNEILPNWETMWCSRKVRDLW-WQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENED   98 (334)
T ss_dssp             HHHHHHTTGGGCC--CCCHHHHHHH-HTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHhHHhccChHHHHHHH-HCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence            68998 5888888888999999988 89999999999999999986 567777776666666666666554432221111


Q ss_pred             h-hhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          410 A-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       410 ~-~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      . .......+...+|++||.||+|++++|.. ++++++.|++||.+|++|||++|||||||+|+|
T Consensus        99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa  162 (334)
T 2qq8_A           99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAA  162 (334)
T ss_dssp             --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHH
T ss_pred             cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHH
Confidence            0 00001133457999999999999999986 456789999999999999999999999999985

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.89  E-value=9.5e-24  Score=219.26  Aligned_cols=131  Identities=20%  Similarity=0.328  Sum_probs=110.0

Q ss_pred             HHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHh
Q 012006          331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  410 (473)
Q Consensus       331 ~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~  410 (473)
                      .++|.++++.+. .++.++||+++ ++|||+.+|+.||++|||+++++.+  +|+.....+++.|.+++.+|....... 
T Consensus         8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~~-   82 (396)
T 1fkm_A            8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHSR-   82 (396)
T ss_dssp             HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCST-
T ss_pred             HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCcc-
Confidence            589999998643 47899999988 6899999999999999999998764  566777788999999999886521111 


Q ss_pred             hhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       411 ~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                           -.+..++|++||.||+|++++|+.  ..+++.|++||.+|+++||++|||||||+|+|
T Consensus        83 -----~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a  138 (396)
T 1fkm_A           83 -----DIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVT  138 (396)
T ss_dssp             -----HHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHH
T ss_pred             -----cHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHH
Confidence                 112356899999999999999996  35789999999999999999999999999985

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.89  E-value=5.5e-24  Score=216.93  Aligned_cols=131  Identities=18%  Similarity=0.299  Sum_probs=106.7

Q ss_pred             CHHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhH
Q 012006          330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ  409 (473)
Q Consensus       330 t~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q  409 (473)
                      ..++|.++++.+  .++.++||+++ ++|||+.+|+.||++|||++|.+.  ++|+.....++..|.+++.+|......+
T Consensus        25 r~~kw~~~l~~~--~~d~~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~~   99 (345)
T 2qfz_A           25 RLDKFKQLLAGP--NTDLEELRRLS-WSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRNDE   99 (345)
T ss_dssp             HHHHHHHHHHCS--BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHcCC--CCCHHHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            458999999853  47899999998 799999999999999999998765  4667777788999999999986532211


Q ss_pred             hhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       410 ~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      .     ..+..++|++||.||+|+ ++|..+  ..++.|++||.+|+.+||++|||||||+|+|
T Consensus       100 ~-----~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a  155 (345)
T 2qfz_A          100 V-----HQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVT  155 (345)
T ss_dssp             ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHH
T ss_pred             c-----hHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHH
Confidence            0     123457899999999999 999864  4578999999999999999999999999985

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.88  E-value=2.5e-24  Score=218.12  Aligned_cols=126  Identities=23%  Similarity=0.422  Sum_probs=104.1

Q ss_pred             CHHHHHHhhhccCCc---CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCC
Q 012006          330 GSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS  406 (473)
Q Consensus       330 t~~~W~~~~~~~g~~---~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~  406 (473)
                      +.++|.++++.+|+.   .+.+++++++ ++|||+++|+.||++|+|++++.++..++   ...++..|.++..++.   
T Consensus        29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~---  101 (331)
T 3qye_A           29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT---  101 (331)
T ss_dssp             HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC---
T ss_pred             HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC---
Confidence            568999999988883   5789999999 78999999999999999997643322111   1234678888875432   


Q ss_pred             hhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       407 ~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                                 ...++|++||.||+|++++|..+.+++++.|++||.+|++|||++|||||||+|+|
T Consensus       102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a  157 (331)
T 3qye_A          102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAG  157 (331)
T ss_dssp             -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHH
T ss_pred             -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHH
Confidence                       12358999999999999999998889999999999999999999999999999985

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.86  E-value=4.2e-23  Score=207.43  Aligned_cols=117  Identities=24%  Similarity=0.372  Sum_probs=98.3

Q ss_pred             HHHHHHhhhccCCcC--ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChh
Q 012006          331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE  408 (473)
Q Consensus       331 ~~~W~~~~~~~g~~~--~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~  408 (473)
                      .++|.+++++|++..  +.+++++++ ++|||+++|+.||+.|+|+.+.           ....+.|..+..+..     
T Consensus         5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~-----   67 (310)
T 3hzj_A            5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS-----   67 (310)
T ss_dssp             -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence            478999999887764  678999999 7999999999999999999752           123467877653211     


Q ss_pred             HhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       409 q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                               ...++|++||.||+|++++|..+++.+++.|++||.+|+.|||++|||||||+|+|
T Consensus        68 ---------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa  123 (310)
T 3hzj_A           68 ---------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAA  123 (310)
T ss_dssp             ---------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHH
T ss_pred             ---------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHH
Confidence                     12358999999999999999988888999999999999999999999999999985

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=99.71  E-value=8.5e-19  Score=174.69  Aligned_cols=115  Identities=24%  Similarity=0.176  Sum_probs=86.4

Q ss_pred             HHHHHHhhhccCCcCChHHHHHHhhcC-C-CChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChh
Q 012006          331 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE  408 (473)
Q Consensus       331 ~~~W~~~~~~~g~~~~~~~lk~~If~~-G-Ip~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~  408 (473)
                      .+++++++.  ...++.++||+.+..+ | +|+++|+.||+.|+|+.+.....            .|....        .
T Consensus        20 ~~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~--------~   77 (292)
T 4hl4_A           20 VAEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNL--------R   77 (292)
T ss_dssp             HHHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTH--------H
T ss_pred             HHHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhh--------c
Confidence            355666664  4457889999998643 3 79999999999999998765321            121110        0


Q ss_pred             HhhhhhhccccccccccccccCCCCCcccCCC--CChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       409 q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~--~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                      .      -.+..++|++||.||+|+++.|..+  ....++.|++||.+|++|||++|||||||+|+|
T Consensus        78 ~------~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa  138 (292)
T 4hl4_A           78 Q------MSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVV  138 (292)
T ss_dssp             H------HCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHH
T ss_pred             c------cchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHH
Confidence            0      1223568999999999999988642  245678999999999999999999999999985

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=98.73  E-value=2.2e-08  Score=99.66  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=57.2

Q ss_pred             HHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHH
Q 012006          332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ  401 (473)
Q Consensus       332 ~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~  401 (473)
                      +..+.++.  +.+++.++||+.+++||||+.+|+.||++|+|++|++++.  |+.+.++++++|.+++++
T Consensus        27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~   92 (294)
T 3qwl_A           27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHA   92 (294)
T ss_dssp             HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHh
Confidence            45556664  6789999999999777799999999999999999998654  788889999999999977

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=96.18  E-value=0.01  Score=52.52  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             EEEEeeCceEEccCCcc-cCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCC
Q 012006           44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG  122 (473)
Q Consensus        44 ~lly~K~~V~vhpt~~~-~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G  122 (473)
                      .+||..++|-++..... ...-.|.|.|+    .--|-|+|...           . ....|++||..|..+...+|.+|
T Consensus        30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~-~~~SfslPL~~v~~~e~~~~~fg   93 (145)
T 2cay_A           30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------P-TQNSLGLELDDLAYVNYSSGFLT   93 (145)
T ss_dssp             CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------H-HHHCEEEEGGGEEEEEEECSSSS
T ss_pred             EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------C-cceEEEeEhHheeeeeEEcCccc
Confidence            68888899999987644 45677888887    44688987432           1 11258999999999999999887


Q ss_pred             ce-EEEEEeC---CCCcCCceEeecCChHHHHHHHHhccccc
Q 012006          123 WQ-YIIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLV  160 (473)
Q Consensus       123 ~~-yiii~~~---dG~~~PpL~F~~GG~~~FL~~L~~~~~l~  160 (473)
                      +. -|++..+   .|...--|-|..||..+|...|.+-+.-.
T Consensus        94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~  135 (145)
T 2cay_A           94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENI  135 (145)
T ss_dssp             SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHH
Confidence            65 3666775   35567789999999999999998754433

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=95.96  E-value=0.055  Score=47.56  Aligned_cols=95  Identities=21%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             EEEEeeCceEEccCCcccCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCc
Q 012006           44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW  123 (473)
Q Consensus        44 ~lly~K~~V~vhpt~~~~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~  123 (473)
                      .+|+..++|-++........-.|.|.|+    .--|-|+....            .. ..+++||+.|..+...+|.+|.
T Consensus        18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~------------~~-~s~~lpl~~v~~~e~~~~~f~~   80 (140)
T 2hth_B           18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN------------HE-CCMAILLSQIVFIEEQAAGIGK   80 (140)
T ss_dssp             CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC------------CS-CCEEEEGGGEEEEEEECCTTSS
T ss_pred             eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC------------Cc-eEEEEEhHHeeeeeeecccccc
Confidence            6888899999998765566778888887    44688875432            11 2478999999999999997764


Q ss_pred             -eEEEEEeCC-------------CCcCCceEeecCChHHHHHHHHh
Q 012006          124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ  155 (473)
Q Consensus       124 -~yiii~~~d-------------G~~~PpL~F~~GG~~~FL~~L~~  155 (473)
                       .-|++.++.             |...--|-|+.||..+|...|..
T Consensus        81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~  126 (140)
T 2hth_B           81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE  126 (140)
T ss_dssp             CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred             CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence             457777764             33455799999999999999977

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=89.45  E-value=1.7  Score=36.32  Aligned_cols=63  Identities=14%  Similarity=0.276  Sum_probs=48.1

Q ss_pred             CceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCceEeecC
Q 012006           65 SGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG  144 (473)
Q Consensus        65 ~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~G  144 (473)
                      .|.|.|...    .|.|+|+.. +.           . ..++++++|...++.|++.--=-+-|++++|.++ .|+|-++
T Consensus        21 dGtL~l~~d----~i~W~p~~~-~~-----------~-~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~   82 (108)
T 1pfj_A           21 DGALYLMAE----RIAWAPEGK-DR-----------F-TISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNE   82 (108)
T ss_dssp             BCEEEEETT----EEEEECSSS-SS-----------C-SEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCS
T ss_pred             CceEEEEcc----eEEEccCCC-CC-----------c-eEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCc
Confidence            399999865    899999544 21           1 2457899999999999965444578889988765 8999887


Q ss_pred             C
Q 012006          145 G  145 (473)
Q Consensus       145 G  145 (473)
                      +
T Consensus        83 ~   83 (108)
T 1pfj_A           83 S   83 (108)
T ss_dssp             S
T ss_pred             H
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	2e-20

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.9 bits (214), Expect = 2e-20
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K
Sbjct: 8   SKFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRK 65

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           +             S +              I+ D+ RT+  +  +      N   L+ I
Sbjct: 66  EYRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 115

Query: 452 LLTYSFYNFDLGYCQ 466
           L  ++  +   GY Q
Sbjct: 116 LYLWAIRHPASGYVQ 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.94
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	96.98
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	94.84
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	93.99

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.2e-27  Score=220.95  Aligned_cols=130  Identities=20%  Similarity=0.322  Sum_probs=106.6

Q ss_pred             HHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhh
Q 012006          332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR  411 (473)
Q Consensus       332 ~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~  411 (473)
                      .+|..++.. ..+++.++||+++ ++|||+++|+.||++|||+++++++..  +.....++..|..+...........  
T Consensus         8 ~~~~~~l~~-~~~i~~~~lr~l~-~~Gip~~lR~~vW~~llg~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~--   81 (194)
T d1fkma1           8 SKFDNILKD-KTIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQHSR--   81 (194)
T ss_dssp             HHHHHHHSS-CSBCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSSCST--
T ss_pred             HHHHHHhcc-cCCCCHHHHHHHH-HcCCChHHHHHHHHHHHhhcCCchhhH--HHHHHHHhhhhhhhhhhhhhccccc--
Confidence            578888864 6678999999988 789999999999999999999988754  4455677888888776654322211  


Q ss_pred             hhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006          412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE  473 (473)
Q Consensus       412 ~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a  473 (473)
                          ..+..++|++||.||+|++++|..  .++++.|++||.+||++||++|||||||||+|
T Consensus        82 ----~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a  137 (194)
T d1fkma1          82 ----DIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVT  137 (194)
T ss_dssp             ----HHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHH
T ss_pred             ----chHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHH
Confidence                123456899999999999999986  45689999999999999999999999999986

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0041  Score=51.94  Aligned_cols=95  Identities=21%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             EEEEeeCceEEccCCcccCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCc
Q 012006           44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW  123 (473)
Q Consensus        44 ~lly~K~~V~vhpt~~~~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~  123 (473)
                      .+|+..++|-++-.+.....-.|.|.|+    .--|-|++....           .  ..+++||+.|.++.+++|..|.
T Consensus        14 ~~l~~~~~V~lydG~~k~~~~~G~l~LT----thRli~~~~~~~-----------~--~s~~lpl~~i~~~e~~~~~fg~   76 (129)
T d2hthb1          14 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKNH-----------E--CCMAILLSQIVFIEEQAAGIGK   76 (129)
T ss_dssp             CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTCC-----------S--CCEEEEGGGEEEEEEECCTTSS
T ss_pred             EEEEEeCCEEeecCCCcccccceEEEEE----eceEEEecCCCC-----------c--eEEEEEhHHceeeeEEcccccC
Confidence            7899999999975543334456999887    336889874221           1  2578999999999999999986


Q ss_pred             e-EEEEEeCC---CCcC----------CceEeecCChHHHHHHHHh
Q 012006          124 Q-YIIVVLSS---GLAF----------PPLYFYTGGVREFLATIKQ  155 (473)
Q Consensus       124 ~-yiii~~~d---G~~~----------PpL~F~~GG~~~FL~~L~~  155 (473)
                      . .++++++.   +...          --|-|..||..+|.+.|.+
T Consensus        77 s~ki~l~l~~~~~~~~~gp~~~s~~~~~KLsFk~GG~~eF~~~l~~  122 (129)
T d2hthb1          77 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE  122 (129)
T ss_dssp             CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred             CceEEEEEccCCcCCcCCCcCcCCceEEEEEECCCCHHHHHHHHHH
Confidence            5 68887752   2111          2388999999999999987

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.059  Score=44.70  Aligned_cols=96  Identities=13%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             EEEEeeCceEEccCCccc-CCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCC
Q 012006           44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG  122 (473)
Q Consensus        44 ~lly~K~~V~vhpt~~~~-d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G  122 (473)
                      .+||..++|-++-..... ..-.|.|.|+    +--|-|++....           . ...+++||..|..+...+|.+|
T Consensus        22 ~~l~~qd~V~Ly~g~~k~~~~~~G~l~LT----shRiI~v~~~~~-----------~-~~S~slpL~~i~~~e~~~~~~~   85 (130)
T d2caya1          22 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAKP-----------T-QNSLGLELDDLAYVNYSSGFLT   85 (130)
T ss_dssp             CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSCH-----------H-HHCEEEEGGGEEEEEEECSSSS
T ss_pred             EEEEEeCCEEEEECCccCccccCceEEEE----eeEEEEecCCCC-----------c-eeEEEeEhhheeEeEEEccccC
Confidence            689999999998654222 3446778776    447889974311           1 1248999999999999999766


Q ss_pred             ce-EEEEEeCC---CCcCCceEeecCChHHHHHHHHh
Q 012006          123 WQ-YIIVVLSS---GLAFPPLYFYTGGVREFLATIKQ  155 (473)
Q Consensus       123 ~~-yiii~~~d---G~~~PpL~F~~GG~~~FL~~L~~  155 (473)
                      .. =|++.++.   +..+--|-|..||..+|.++|++
T Consensus        86 ss~KI~l~l~~~~~~~~~vklsFr~gg~~~F~~~~~~  122 (130)
T d2caya1          86 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATER  122 (130)
T ss_dssp             SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCCCEEEEEEcCCChHHHHHHHHH
Confidence            33 47777764   45577899999999999999887

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.092  Score=42.02  Aligned_cols=74  Identities=14%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             CCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCceEeec
Q 012006           64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYT  143 (473)
Q Consensus        64 I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~  143 (473)
                      .+|.|.|..+    .|.|+|+....            . ..+|++.+|.+.++.|++..---+-|++++|.++ .|+|-+
T Consensus        20 ~~GtL~l~~d----~l~W~p~~~~~------------~-~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~~s~-~F~Ftn   81 (108)
T d2rnrb1          20 QDGALYLMAE----RIAWAPEGKDR------------F-TISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSN   81 (108)
T ss_dssp             CEEEEEECSS----EEEEEESSCSS------------C-SEEEETTTEEEEEECCTTCSSEEEEEEETTSCEE-EEEECC
T ss_pred             CCcEEEEEcC----eEEEEcCCCCC------------c-eEEEEhhhhhceecCCCCcccceeEEEEeCCCeE-EEEECC
Confidence            7899999855    49999954221            1 2579999999999999865545578888998874 788877


Q ss_pred             CCh-----HHHHHHHHh
Q 012006          144 GGV-----REFLATIKQ  155 (473)
Q Consensus       144 GG~-----~~FL~~L~~  155 (473)
                      ...     ..+-+.|.+
T Consensus        82 ~~~~~~~Rd~iK~~Lq~   98 (108)
T d2rnrb1          82 ESTAVKERDAVKDLLQQ   98 (108)
T ss_dssp             TTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            543     345556655