Citrus Sinensis ID: 012027

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGSGCCDDYDEEPQPNRFRQLE
Secondary Structure (PSIPRED)
cccccEEEccccccEEccccccccccccEEEcccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccccccEEEccccccccccccccccccccccEEEccccHHcccccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccEEEEEcccccccccccEEEEEEEEEEcccccccccEEEcccccccEEEEEcccccccccccEEEEEEEccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccccccHcccccccEEEccccccHcccccHHcccccccEEEccccccHHcccHHcccHHHccEEEcccccccccccccccHHcccEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccHHccEEEcccccccEcccHHHHHHcccEEEcccccHHcccccccccccEEEcccccccEccccccccccccEEEEcccHHHcccccccHHHHHHHHHHHHHccccccccEccccccccHHHcccccccEEEEEcccccccccccccEEEEEEEEcccccccccccEEEccccEEEEcccccccccccccEEEEEEcccccEEcccccccccEEEEEEEEccccEEEEccccccEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHccccc
Coil and Loop (DISEMBL)
MECLRellldktdikempLSIELLSGLVQLTLKGcknlvrlpsninslkslktlnllgcfkfENLLETVgqvesleeldisgtaircppssiFLMKNLKTlsfrgcngppssascylpfpinlmrrssdlgalmlpslsglgsltkldlsdcglgegaipsdignlHSLKTLYlsknnfvtlpaSINClfnleklkledckrlqslpqlppnvekvrVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEvvsapshkfsivvpgseipkwfmyqnegssitvtrpsylcnmnqvvgyaacrvfhvpkhstgirrfyryphpahvlhcsmdekfghrgsdhlwllylprqsyycnvkwhfesnhfrlsfmderekhcpagsgtglkvkrcgfhpgymheveefdettKQWTRFTSYNLNEFHHDFVGSNMAVakangsgccddydeepqpnrfrqle
Flexible Loop (DISEMBL)
MECLREllldktdikempLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSlpqlppnvekvRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGSGCCDDydeepqpnrfrqle
Low Complexity Region (SEG)
MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPsninslkslktlnllGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDlgalmlpslsglgsltkldlsDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGSGCCDDYDEEPQPNRFRQLE
Disordered region (IsUnstruct)
****RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGSGCC****************
Disordered Region (DISOPRED)
MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSAS*YLP**IN****SSD**ALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLG**KLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHE**********************************************************
Disordered Region (DISEMBL)
MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGSGCCDDYDEEPQPNRFRQLE
Disordered Region (DISPRO)
*ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEV***************************************CCDDYD**P*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGSGCCDDYDEEPQPNRFRQLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.614	0.253	0.338	2e-35
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.381	0.175	0.330	6e-13
P0CB16	1201	Putative disease resistan	no	no	0.415	0.163	0.304	8e-13
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.434	0.157	0.301	5e-09
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.188	0.046	0.39	2e-08
O82500	1095	Putative disease resistan	no	no	0.663	0.285	0.235	2e-08
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.438	0.111	0.327	6e-08
P26337	630	Putative adenylate cyclas	N/A	no	0.383	0.287	0.272	1e-07
P23799	630	Putative adenylate cyclas	N/A	no	0.415	0.311	0.270	1e-07
Q96NW7	1537	Leucine-rich repeat-conta	yes	no	0.444	0.136	0.294	2e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  150 bits (380), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/319 (33%), Positives = 162/319 (50%), Gaps = 29/319 (9%)

Query: 6    ELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN 64
            ++ +  + I+E+P SI +  + + +L L   KNLV LPS+I  LKSL +L++ GC K E+
Sbjct: 716  QIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLES 775

Query: 65   LLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLM 124
            L E +G +++L   D S T I  PPSSI  +  L  L FRG          +  FP    
Sbjct: 776  LPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKD-----GVHFEFP---- 826

Query: 125  RRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA 184
                       P   GL SL  L+LS C L +G +P +IG+L SLK L LS+NNF  LP+
Sbjct: 827  -----------PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPS 875

Query: 185  SINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFV 244
            SI  L  L+ L L+DC+RL  LP+LPP + ++ V+ C   +  +  L  ++     +   
Sbjct: 876  SIAQLGALQSLDLKDCQRLTQLPELPPELNELHVD-CHMALKFIHYLVTKRKKLHRVKLD 934

Query: 245  DSLKLLGKNGLAISMLREFLEV---VSAPSHKFSIVVPGS----EIPKWFMYQNEGSSIT 297
            D+      N  A +M +    +   +SA       V  G     +IP WF +Q   SS++
Sbjct: 935  DAHNDTMYNLFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVS 994

Query: 298  VTRPSYLCNMNQVVGYAAC 316
            V  P      ++ +G+A C
Sbjct: 995  VNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 32/212 (15%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           M  L++L +D + + ++P     L  L  ++L   K L  LP++I +L +LKTL+L    
Sbjct: 381 MSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSNTK-LRDLPASIGNLFTLKTLSLQDNP 439

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           K  +L  + GQ+  L+EL ++G  I   P S+    +L+TL+         +A   LP  
Sbjct: 440 KLGSLPASFGQLSGLQELTLNGNRIHELP-SMGGASSLQTLTVD------DTALAGLP-- 490

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKN-NF 179
                  +D GAL         +L  L LS+  L E  +P++ GNLH+LKTL L  N   
Sbjct: 491 -------ADFGALR--------NLAHLSLSNTQLRE--LPANTGNLHALKTLSLQGNQQL 533

Query: 180 VTLPASINCLFNLEKLKLEDCKRLQSLPQLPP 211
            TLP+S+  L  LE+L L++     S+ +LPP
Sbjct: 534 ATLPSSLGYLSGLEELTLKNS----SVSELPP 561

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 27/223 (12%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           LR L + KT + E+  +I  +  L +L L+ C  +  LPS I  L  L+  ++ GC K +
Sbjct: 681 LRILDMSKTSLPELADTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLK 739

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           N+  + G++  L E+++S T +   P  I  + NLK L  R C+   +            
Sbjct: 740 NINGSFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKT------------ 787

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
                      LP+L  L +L   D+S C   E  I     NL  L  + LS+ N   LP
Sbjct: 788 -----------LPNLEKLTNLEIFDVSGCTELE-TIEGSFENLSCLHKVNLSETNLGELP 835

Query: 184 ASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKV--RVNGCASL 224
             I+ L NL++L L +C +L++LP L      V   V+GC +L
Sbjct: 836 NKISELSNLKELILRNCSKLKALPNLEKLTHLVIFDVSGCTNL 878

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 104/242 (42%), Gaps = 37/242 (15%)

Query: 7    LLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL 66
            L L+ T I+E+P +I  L  LV+L +K C  L  LP+++N L SL+TL+L GC    +  
Sbjct: 869  LYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVN-LSSLETLDLSGCSSLRSFP 927

Query: 67   ETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRR 126
                  ES++ L +  TAI   P  +    NLK L    C      +   LP  I  +++
Sbjct: 928  LI---SESIKWLYLENTAIEEIP-DLSKATNLKNLKLNNCK-----SLVTLPTTIGNLQK 978

Query: 127  SSDL------GALMLPSLSGLGSLTKLDLSDCG-------------------LGEGAIPS 161
                      G  +LP    L SL  LDLS C                         IPS
Sbjct: 979  LVSFEMKECTGLEVLPIDVNLSSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPS 1038

Query: 162  DIGNLHSLKTLYLSK-NNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNG 220
             IGNLH L  L + +      LP  +N L +L  L L  C  L++ P +   +E + +  
Sbjct: 1039 TIGNLHRLVKLEMKECTGLEVLPTDVN-LSSLMILDLSGCSSLRTFPLISTRIECLYLQN 1097

Query: 221  CA 222
             A
Sbjct: 1098 TA 1099

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 60/100 (60%)

Query: 4    LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
            ++EL +  T I+E+P SI+ L  L +L L+  ++L  LP++I  LK L+TLNL GC   E
Sbjct: 1351 VKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLE 1410

Query: 64   NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSF 103
               ++  +++ L  LD+S T I+  PSSI  +  L  L F
Sbjct: 1411 RFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLF 1450

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 22/335 (6%)

Query: 2   ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
           ECL EL +  + +K++   ++ L  L  + L   +NL  LP N+     L  L+L  C  
Sbjct: 608 ECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILP-NLMEATKLNRLDLGWCES 666

Query: 62  FENLLETVGQVESLEELDISG-TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
              L  ++  ++ L  L++S    +   P++I L  +L+ L FR C    +      P  
Sbjct: 667 LVELPSSIKNLQHLILLEMSCCKKLEIIPTNINL-PSLEVLHFRYCTRLQT-----FPEI 720

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN-F 179
              +R  + +G  +      +   +K+D  +  +    +   +   + L+ L L +N   
Sbjct: 721 STNIRLLNLIGTAITEVPPSVKYWSKID--EICMERAKVKRLVHVPYVLEKLCLRENKEL 778

Query: 180 VTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCT 239
            T+P  +  L  L+ + +  C  + SLP+LP +V  +    C SL  L G     ++   
Sbjct: 779 ETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQILHGHF---RNKSI 835

Query: 240 IIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVT 299
            ++F++ LKL  +    I        V    S   + V+PG  +P +F Y++ GSSI + 
Sbjct: 836 HLNFINCLKLGQRAQEKIHR-----SVYIHQSSYIADVLPGEHVPAYFSYRSTGSSIMIH 890

Query: 300 RPSYLCNMNQVVGYAACRVFHVPKHSTGIR-RFYR 333
             S   ++++   +  C V    K   G   +FY+
Sbjct: 891 --SNKVDLSKFNRFKVCLVLGAGKRFEGCDIKFYK 923

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 99/220 (45%), Gaps = 13/220 (5%)

Query: 2   ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
           E L EL + + DI ++P  I+ L  L Q+       + +LPS  + LK+L  L L     
Sbjct: 83  ENLVELDVSRNDIPDIPDDIKHLQSL-QVADFSSNPIPKLPSGFSQLKNLTVLGL-NDMS 140

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNG----PPSSASCYL 117
              L    G +  LE L++    ++  P +I  +  LK L   G N     PP     YL
Sbjct: 141 LTTLPADFGSLTQLESLELRENLLKHLPETISQLTKLKRLDL-GDNEIEDLPPYLG--YL 197

Query: 118 PFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKN 177
           P    L    + L  L  P L  L  LT LD+S+  L E  +P++I  L SL  L L++N
Sbjct: 198 PGLHELWLDHNQLQRLP-PELGLLTKLTYLDVSENRLEE--LPNEISGLVSLTDLDLAQN 254

Query: 178 NFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVR 217
               LP  I  L  L  LKL D  RLQ L     N E ++
Sbjct: 255 LLEALPDGIAKLSRLTILKL-DQNRLQRLNDTLGNCENMQ 293

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 6/187 (3%)

Query: 43  SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLS 102
           + I  ++SL+ L+L GC+     LE + +  +L ELDISG  +      +  + NLK LS
Sbjct: 271 TAIGGMRSLEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGSAVVLKNLINLKVLS 330

Query: 103 FRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162
              C              ++ +  S   G   L  ++ L +L +LD+S C   E  +  D
Sbjct: 331 VSNCKNFKDLNGLERLVNLDKLNLSGCHGVSSLGFVANLSNLKELDISGC---ESLVCFD 387

Query: 163 -IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPP--NVEKVRVN 219
            + +L++L+ LYL      T   +I  L  + +L L  C+R+ SL  L     +E++ + 
Sbjct: 388 GLQDLNNLEVLYLRDVKSFTNVGAIKNLSKMRELDLSGCERITSLSGLETLKGLEELSLE 447

Query: 220 GCASLVT 226
           GC  +++
Sbjct: 448 GCGEIMS 454

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 7/203 (3%)

Query: 27  LVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR 86
           L  L +  C  +  L + I  ++SL+ L+L GC+     LE + +  +L ELDISG  + 
Sbjct: 256 LKMLDISSCHEITDLTA-IGGVRSLEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVL 314

Query: 87  CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTK 146
                +  + NLK LS   C              +  +  S   G   L  ++ L +L +
Sbjct: 315 GSAVVLKNLINLKVLSVSNCKNFKDLNGLERLVNLEKLNLSGCHGVSSLGFVANLSNLKE 374

Query: 147 LDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQS 205
           LD+S C   E  +  D + +L++L+ LYL      T   +I  L  + +L L  C+R+ S
Sbjct: 375 LDISGC---ESLVCFDGLQDLNNLEVLYLRDVKSFTNVGAIKNLSKMRELDLSGCERITS 431

Query: 206 LPQLPP--NVEKVRVNGCASLVT 226
           L  L     +E++ + GC  +++
Sbjct: 432 LSGLETLKGLEELSLEGCGEIMS 454

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 28/238 (11%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L +L L+   ++ +P +   L  L  L L+   +L  LP +++ L  L+ L+L G  +F 
Sbjct: 140 LTQLYLNDAFLEFLPANFGRLVKLRILELRE-NHLKTLPKSMHKLAQLERLDL-GNNEFG 197

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLS------------FRGCNGPP- 110
            L E + Q+++L EL +   A++  P SI  +K L  L               GC     
Sbjct: 198 ELPEVLDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALED 257

Query: 111 ----SSASCYLPFPINLMRRSSDLGA-----LMLPSLSGLGSLTKLDLSDCGLGE-GAIP 160
               S+    LP  I L+++ + L        MLP+   +G+L+ L+  DC   E  ++P
Sbjct: 258 LLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNT--IGNLSLLEEFDCSCNELESLP 315

Query: 161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRV 218
           S IG LHSL+TL + +N    LP  I    N+  + L   K L+ LP+    ++K+RV
Sbjct: 316 STIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNK-LEFLPEEIGQMQKLRV 372

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.927	0.364	0.390	6e-73
224146780	540	predicted protein [Populus trichocarpa]	0.951	0.831	0.389	2e-70
224114331	1119	tir-nbs-lrr resistance protein [Populus	0.781	0.329	0.425	4e-66
359496026	1250	PREDICTED: TMV resistance protein N-like	0.853	0.322	0.407	3e-65
296090591	771	unnamed protein product [Vitis vinifera]	0.853	0.522	0.403	5e-65
224114311	1144	tir-nbs-lrr resistance protein [Populus	0.855	0.353	0.384	3e-64
359493273	1233	PREDICTED: TMV resistance protein N-like	0.919	0.351	0.360	9e-61
224104273	1033	tir-nbs-lrr resistance protein [Populus	0.769	0.351	0.413	4e-60
105922631	1336	TIR-NBS-LRR-TIR type disease resistance	0.769	0.271	0.413	5e-60
224126507	1741	tir-nbs-lrr resistance protein [Populus	0.637	0.172	0.462	1e-59

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 195/499 (39%), Positives = 273/499 (54%), Gaps = 61/499 (12%)

Query: 2    ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
            +CLR+L LD+T I+E+P SI+ L GL+ L+LK CK L  LPS+IN LKSLKTL+L GC +
Sbjct: 737  KCLRKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLKSLKTLHLSGCSE 796

Query: 62   FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY---LP 118
             ENL E  GQ+E L ELD+SGTAIR PP SIF +KNLK LSF GC     S +     L 
Sbjct: 797  LENLPENFGQLECLNELDVSGTAIREPPVSIFSLKNLKILSFHGCAESSRSTTNIWQRLM 856

Query: 119  FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
            FP+   +R++    ++  SLSGL SLT+L LS+C LGEGA+P+DIG L SL+ L LS+N 
Sbjct: 857  FPLMPGKRANSTSLVLP-SLSGLSSLTRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNK 915

Query: 179  FVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSC 238
            FV+LP SI+ L  L+ L++EDCK LQSLP+LP N+E+ RVNGC SL  +  + KL + + 
Sbjct: 916  FVSLPTSIDQLSGLQFLRMEDCKMLQSLPELPSNLEEFRVNGCTSLEKMQFSRKLCQLNY 975

Query: 239  TIIDFVDSLKLLGK---NGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSS 295
                F++  +L      N +  ++LR+  +        FS+++PGSEIP WF +Q+EGSS
Sbjct: 976  LRYLFINCWRLSESDCWNNMFPTLLRKCFQGPPNLIESFSVIIPGSEIPTWFSHQSEGSS 1035

Query: 296  ITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRR----------------FYRYPHPAH 339
            ++V  P +    ++ +GYA C     P     + R                 Y    P  
Sbjct: 1036 VSVQTPPHSHENDEWLGYAVCASLGYPDFPPNVFRSPMQCFFNGDGNESESIYVRLKPCE 1095

Query: 340  VLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGTG 399
            +L            SDHLW LY P        ++     H R  F D    +C     + 
Sbjct: 1096 IL------------SDHLWFLYFPS-------RFKRFDRHVRFRFED----NC-----SQ 1127

Query: 400  LKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDF-------VGSNMAVAKANG 452
             KV +CG    Y  +VEE +  T  +   T   ++E   +        +G    V +A+G
Sbjct: 1128 TKVIKCGVRLVYQQDVEELNRMTNLYENSTFEGVDECFQESGGALVKRLGHTNDVGEASG 1187

Query: 453  SGCCDDYDEEPQPNRFRQL 471
            S      DE+P   + +Q+
Sbjct: 1188 SVSS---DEQPPTKKLKQI 1203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146780|ref|XP_002336335.1| predicted protein [Populus trichocarpa] gi|222834747|gb|EEE73210.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 194/498 (38%), Positives = 272/498 (54%), Gaps = 49/498 (9%)

Query: 2   ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
           +CLR+L LD+T I+E+P SI+ L GL+ L+LK CK L  LPS+IN LKSLKTL+L GC +
Sbjct: 64  KCLRKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLKSLKTLHLSGCSE 123

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY---LP 118
            ENL E  GQ+E L ELD+SGTAIR PP SIF +KNLK LSF GC     S +     L 
Sbjct: 124 LENLPENFGQLECLNELDVSGTAIREPPVSIFSLKNLKILSFHGCAESSRSTTNIWQRLM 183

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
           FP+   +R++    ++  SLSGL SLT+L LS+C LGEGA+P+DIG L SL+ L LS+N 
Sbjct: 184 FPLMPGKRANSTSLVLP-SLSGLSSLTRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNK 242

Query: 179 FVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSC 238
           FV+LP SI+ L  L+ L +EDCK LQSLPQLPPN+E +RVNGC SL  +  +    K +C
Sbjct: 243 FVSLPTSIDQLSGLKFLYMEDCKMLQSLPQLPPNLELLRVNGCTSLEKMQFSSNPYKFNC 302

Query: 239 TIIDFVDSLKLLGK---NGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSS 295
               F++  +L      N +  ++LR+  +        FS+ +PGSEIP WF +Q+EGSS
Sbjct: 303 LSFCFINCWRLSESDCWNNMFHTLLRKCFQGPPNLIEVFSVFIPGSEIPTWFSHQSEGSS 362

Query: 296 ITVTRPSYLCNMNQVVGYAACRVFHVPKHSTG--IRRFYRYPHPAHVLHCSMDE----KF 349
           ++V  P +    ++ +GYA C        ++   +  ++    P       ++      +
Sbjct: 363 VSVQTPPHSLENDECLGYAVCASLEYDGCASSELLTDYWVSGVPISCFFNGVNYGSVMSY 422

Query: 350 GHRG-----------SDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMDEREKHCPAGSGT 398
            HRG           SDHLW L+ P        ++     H  L F   R +        
Sbjct: 423 FHRGIEMQWKRDNIPSDHLWYLFFPS-------RFKIFDRHVSLRFETYRPQ-------- 467

Query: 399 GLKVKRCGFHPGYMHEVEE-----FDETTKQWTRFTSYNLNEFHHDFVGSNMAVAKANGS 453
            +KV +CG  P Y  +VE       DE  ++    T             +N  V +A+GS
Sbjct: 468 -IKVIKCGVRPVYHQDVENSTFEGVDECFQESGGSTMRGGGALVKRLCYTN-DVGEASGS 525

Query: 454 GCCDDYDEEPQPNRFRQL 471
                 DE+P   + +Q+
Sbjct: 526 ---VSSDEQPPTKKLKQI 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114331|ref|XP_002332400.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832723|gb|EEE71200.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 177/416 (42%), Positives = 234/416 (56%), Gaps = 47/416 (11%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           M CL  L LD T I+E+  SI  L GL  L++K CKNL  +PS+I  LKSLK L+L GC 
Sbjct: 560 MNCLMVLRLDGTGIEELSSSIHHLIGLEVLSMKTCKNLKSIPSSIGCLKSLKKLDLFGCS 619

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           +FEN+ E +G+VESLEE D+SGT+IR PP+SIFL+KNLK LSF GC              
Sbjct: 620 EFENIPENLGKVESLEEFDVSGTSIRQPPASIFLLKNLKVLSFDGCK------------- 666

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
               R +  L    LPSLSGL SL  LDL  C L EGA+P DIG L SLK+L LS+NNFV
Sbjct: 667 ----RIAESLTDQRLPSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSRNNFV 722

Query: 181 TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTI 240
           +LP SIN L  LE L LEDC  L+SLP++P  V+ + +NGC  L  +    +L  S  + 
Sbjct: 723 SLPRSINQLSGLEMLALEDCTMLESLPEVPSKVQTLNLNGCIRLKEIPDPTELSSSKRSE 782

Query: 241 IDFVDSLKLLGKNG---LAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT 297
              ++  +L   NG   + ++ML  +LE +S P   F I +PG+EIP WF +Q+ GSSI+
Sbjct: 783 FICLNCWELYNHNGEDSMGLTMLERYLEGLSNPRPGFGIAIPGNEIPGWFNHQSMGSSIS 842

Query: 298 VTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYR------YPHPAHVLHCSMDEKFGH 351
           V  PS+       +G+ AC  F     S  +   ++      YP P   + C+  +    
Sbjct: 843 VQVPSW------SMGFVACVAFSANGESPSLFCHFKANGRENYPSPM-CISCNYIQVL-- 893

Query: 352 RGSDHLWLLYLPRQSYYCNVKWHFES-NHFRLSFMDEREKHCPAGSGTGLKVKRCG 406
             SDH+WL YL         +W  ES ++  LSF   +          G+KVK CG
Sbjct: 894 --SDHIWLFYLSFDHLKELKEWKHESYSNIELSFHSFQ---------PGVKVKNCG 938

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 181/444 (40%), Positives = 246/444 (55%), Gaps = 41/444 (9%)

Query: 1    MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
            ME LREL LD T IKE+PLS+E L+GLV L L+ C+ L+ LPS+I +LKSL TL L GC 
Sbjct: 743  MEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCS 802

Query: 61   KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            + E L E +G +E L EL   G+A+  PPSSI L++NLK LSF+GCNG PSS      + 
Sbjct: 803  QLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWS 862

Query: 121  INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGN-LHSLKTLYLSKNNF 179
            +  +RR SD     LPSLSGL SL +L+LSDC + EGA+P+D+G  L SL+ L L  N+F
Sbjct: 863  MLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDF 922

Query: 180  VTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCT 239
            VTLP  I+ L NL+ L L  CKRLQ LP LPPN+ ++    C SL TL G      S+  
Sbjct: 923  VTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGL-----SAPC 977

Query: 240  IIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVT 299
             + F +S +   +N    + L    EV   P  KF+  +PG+ IP+WF  Q  G SI V 
Sbjct: 978  WLAFTNSFR---QNWGQETYLA---EVSRIP--KFNTYLPGNGIPEWFRNQCMGDSIMVQ 1029

Query: 300  RPSYLCNMNQVVGYAACRVFHVPKHSTGIR-----RFYRYPHPAHVLHCSMD-------- 346
             PS+  N N  +G+A C VF + + +   R                L C +D        
Sbjct: 1030 LPSHWYNDN-FLGFAMCIVFALKEPNQCSRGAMLCELESSDLDPSNLGCFLDHIVWEGHS 1088

Query: 347  EKFGHRGSDHLWLLYLPRQSYYC-NVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRC 405
            +  G   SDHLWL Y P       ++ W  + +H + SF+          +G   +VK C
Sbjct: 1089 DGDGFVESDHLWLGYHPNFPIKKDDMDWPNKLSHIKASFV---------IAGIPHEVKWC 1139

Query: 406  GFHPGYMHEVEEFDETTKQWTRFT 429
            GF   YM   E+ ++   + T+++
Sbjct: 1140 GFRLVYM---EDLNDDNSKITKYS 1160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090591|emb|CBI40960.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 179/444 (40%), Positives = 245/444 (55%), Gaps = 41/444 (9%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           ME LREL LD T IKE+PLS+E L+GLV L L+ C+ L+ LPS+I +LKSL TL L GC 
Sbjct: 249 MEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCS 308

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           + E L E +G +E L EL   G+A+  PPSSI L++NLK LSF+GCNG PSS      + 
Sbjct: 309 QLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWS 368

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGN-LHSLKTLYLSKNNF 179
           +  +RR SD     LPSLSGL SL +L+LSDC + EGA+P+D+G  L SL+ L L  N+F
Sbjct: 369 MLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDF 428

Query: 180 VTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCT 239
           VTLP  I+ L NL+ L L  CKRLQ LP LPPN+ ++    C SL TL G      S+  
Sbjct: 429 VTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGL-----SAPC 483

Query: 240 IIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVT 299
            + F +S +   +N    + L E   +      KF+  +PG+ IP+WF  Q  G SI V 
Sbjct: 484 WLAFTNSFR---QNWGQETYLAEVSRI-----PKFNTYLPGNGIPEWFRNQCMGDSIMVQ 535

Query: 300 RPSYLCNMNQVVGYAACRVFHVPKHSTGIR-----RFYRYPHPAHVLHCSMD-------- 346
            PS+  N N  +G+A C VF + + +   R                L C +D        
Sbjct: 536 LPSHWYNDN-FLGFAMCIVFALKEPNQCSRGAMLCELESSDLDPSNLGCFLDHIVWEGHS 594

Query: 347 EKFGHRGSDHLWLLYLPRQSYYC-NVKWHFESNHFRLSFMDEREKHCPAGSGTGLKVKRC 405
           +  G   SDHLWL Y P       ++ W  + +H + SF+          +G   +VK C
Sbjct: 595 DGDGFVESDHLWLGYHPNFPIKKDDMDWPNKLSHIKASFVI---------AGIPHEVKWC 645

Query: 406 GFHPGYMHEVEEFDETTKQWTRFT 429
           GF   YM   E+ ++   + T+++
Sbjct: 646 GFRLVYM---EDLNDDNSKITKYS 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114311|ref|XP_002332395.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832718|gb|EEE71195.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 178/463 (38%), Positives = 253/463 (54%), Gaps = 59/463 (12%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           M CL  L LD+T I ++  SI  L GL  L++  CKNL  +PS+I+ LKSLK L+L GC 
Sbjct: 561 MNCLMVLRLDETGITKLSSSIRHLIGLGLLSMNSCKNLKSIPSSISCLKSLKKLDLSGCS 620

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           + +N+ + +G+VESLEE D+SGT+IR PP+SIFL+K+LK LSF GC              
Sbjct: 621 ELKNIPKNLGKVESLEEFDVSGTSIRQPPASIFLLKSLKVLSFDGCK------------- 667

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
               R + +     LPSLSGL SL  LDL  C L EGA+P DIG L SL++L LS+NNFV
Sbjct: 668 ----RIAVNPTDHRLPSLSGLCSLEVLDLCACNLREGALPEDIGFLSSLRSLDLSQNNFV 723

Query: 181 TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTI 240
           +LP SIN LF LE+L LEDC  L+SLP++P  V+ V +NGC SL  +   +KL  S  + 
Sbjct: 724 SLPQSINQLFELERLVLEDCSMLESLPEVPSKVQTVNLNGCISLKEIPDPIKLSSSKISE 783

Query: 241 IDFVDSLKLL---GKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT 297
              ++  +L    G++ + ++ML  +L+ +S P   F IVVPG+EIP WF ++++GSSI+
Sbjct: 784 FLCLNCWELYEHNGQDSMGLTMLERYLKGLSNPRPGFGIVVPGNEIPGWFNHRSKGSSIS 843

Query: 298 VTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYR------YPHPAHVLHCSMDEKFGH 351
           V  PS+       +G+ AC  F     S  +   ++      YP P   + C+  +    
Sbjct: 844 VQVPSW------SMGFVACVAFSANGESPSLFCHFKTNGRENYPSPM-CISCNSIQVL-- 894

Query: 352 RGSDHLWLLYLPRQSYYCNVKW-HFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGF--- 407
             SDH+WL YL         +W H   ++  LSF   + +         +KVK CG    
Sbjct: 895 --SDHIWLFYLSFDYLIELKEWQHGSFSNIELSFHSSQPR---------VKVKNCGVCLL 943

Query: 408 -------HPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGS 443
                   P   H +    ET   +    S  L+  +H ++ S
Sbjct: 944 SSLYITSQPSSAHFIVTSKETASSYK--ASLTLSSSYHHWMAS 984

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 255/491 (51%), Gaps = 57/491 (11%)

Query: 1    MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
            ME L++LLLD T +K++  SIE L+GLV L L+ CKNL  LP +I +LKSL+TL + GC 
Sbjct: 726  MEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCS 785

Query: 61   KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            K + L E +G ++ L +L   GT +R PPSSI L++NL+ LSF GC G  S++   L   
Sbjct: 786  KLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSSLFSF 845

Query: 121  INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
              L R+SSD   L LPSLSGL SL +LD+SDC L EGA+P DI NL SL+TL LS+NNF 
Sbjct: 846  WLLPRKSSDTIGLQLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFF 905

Query: 181  TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKL--RKSSC 238
            +LPA I+ L  L  L L  CK L  +P+LP ++ +V    C+SL T+L    +   +  C
Sbjct: 906  SLPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSLNTILTPSSVCNNQPVC 965

Query: 239  TIIDFV--DSLKLLGKNGLA--ISMLREFLEVVS---------APSHKFSIVVPGSEIPK 285
              + F   +   L  +N  +  ++++   +++V+          P   FSI +PGSEIP 
Sbjct: 966  RWLVFTLPNCFNLDAENPCSNDMAIISPRMQIVTNMLQKLQNFLPDFGFSIFLPGSEIPD 1025

Query: 286  WFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVP-------------KHSTGIRRFY 332
            W   QN GS +T+  P +    N  +G+A C VF                +  +    F 
Sbjct: 1026 WISNQNLGSEVTIELPPHWFESN-FLGFAVCCVFAFEDIAPNGCSSQLLCQLQSDESHFR 1084

Query: 333  RYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFESNHFRLSFMD--EREK 390
               H  H + C  + +     S H+WL Y PR                R+S+ D   R +
Sbjct: 1085 GIGHILHSIDCEGNSE-DRLKSHHMWLAYKPR-------------GRLRISYGDCPNRWR 1130

Query: 391  HCPAGSG-----TGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFHHDFVGSNM 445
            H  A  G         V++CG H  Y  + EE + T    +   +++      D   ++ 
Sbjct: 1131 HAKASFGFISCCPSNMVRKCGIHLIYAQDHEERNSTMIHHSSSGNFS------DLKSADS 1184

Query: 446  AVAKANGSGCC 456
            +V  A+GSG C
Sbjct: 1185 SVG-ASGSGLC 1194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104273|ref|XP_002333965.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222839252|gb|EEE77603.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 172/416 (41%), Positives = 229/416 (55%), Gaps = 53/416 (12%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           M CL EL LD T ++E+  SI  L  L  L++  CKNL  +PS+I  LKSLK L+L GC 
Sbjct: 475 MNCLMELRLDGTGVEELSSSIHHLISLEVLSMNNCKNLESIPSSIGCLKSLKKLDLSGCS 534

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           + +NL     +VES EE D SGT+IR PP+ IFL+KNLK LSF GC              
Sbjct: 535 ELKNL----EKVESSEEFDASGTSIRQPPAPIFLLKNLKVLSFDGCK------------- 577

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
               R +  L    LPSLSGL SL  LDL  C L EGA+P DIG L SLK+L LS+NNFV
Sbjct: 578 ----RIAVSLTDQRLPSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSRNNFV 633

Query: 181 TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTI 240
           +LP S+N L  LE L LEDC+ L+SLP++P  V+ V +NGC SL  +   +KL  S  + 
Sbjct: 634 SLPRSVNQLSGLEMLVLEDCRMLESLPEVPSKVQTVNLNGCTSLKEIPDPIKLSSSKISE 693

Query: 241 IDFVDSLKLL---GKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT 297
              ++  +L    G++ + ++ML  +L+ +S P   F I VPG+EIP WF +Q++GSSI+
Sbjct: 694 FLCLNCWELYEHNGQDSMGLTMLERYLQGLSNPRPGFGIAVPGNEIPGWFNHQSKGSSIS 753

Query: 298 VTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAH------VLHCSMDEKFGH 351
           V  PS+       +G+ AC  F     + G R F R    A+       L C    +   
Sbjct: 754 VQVPSW------SMGFVACVAF----SAYGERPFLRCDFKANGRENYPSLMCINSIQV-- 801

Query: 352 RGSDHLWLLYLPRQSYYCNVKWHFES-NHFRLSFMDEREKHCPAGSGTGLKVKRCG 406
             SDH+WL YL         +W  ES ++  LSF     +         +KVK CG
Sbjct: 802 -LSDHIWLFYLSFDYLKELKEWQNESFSNIELSFHSYERR---------VKVKNCG 847

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922631|gb|ABF81427.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 172/416 (41%), Positives = 229/416 (55%), Gaps = 53/416 (12%)

Query: 1    MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
            M CL EL LD T ++E+  SI  L  L  L++  CKNL  +PS+I  LKSLK L+L GC 
Sbjct: 647  MNCLMELRLDGTGVEELSSSIHHLISLEVLSMNNCKNLESIPSSIGCLKSLKKLDLSGCS 706

Query: 61   KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            + +NL     +VES EE D SGT+IR PP+ IFL+KNLK LSF GC              
Sbjct: 707  ELKNL----EKVESSEEFDASGTSIRQPPAPIFLLKNLKVLSFDGCK------------- 749

Query: 121  INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
                R +  L    LPSLSGL SL  LDL  C L EGA+P DIG L SLK+L LS+NNFV
Sbjct: 750  ----RIAVSLTDQRLPSLSGLCSLEVLDLCACNLREGALPEDIGCLSSLKSLDLSRNNFV 805

Query: 181  TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTI 240
            +LP S+N L  LE L LEDC+ L+SLP++P  V+ V +NGC SL  +   +KL  S  + 
Sbjct: 806  SLPRSVNQLSGLEMLVLEDCRMLESLPEVPSKVQTVNLNGCTSLKEIPDPIKLSSSKISE 865

Query: 241  IDFVDSLKLL---GKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT 297
               ++  +L    G++ + ++ML  +L+ +S P   F I VPG+EIP WF +Q++GSSI+
Sbjct: 866  FLCLNCWELYEHNGQDSMGLTMLERYLQGLSNPRPGFGIAVPGNEIPGWFNHQSKGSSIS 925

Query: 298  VTRPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAH------VLHCSMDEKFGH 351
            V  PS+       +G+ AC  F     + G R F R    A+       L C    +   
Sbjct: 926  VQVPSW------SMGFVACVAF----SAYGERPFLRCDFKANGRENYPSLMCINSIQV-- 973

Query: 352  RGSDHLWLLYLPRQSYYCNVKWHFES-NHFRLSFMDEREKHCPAGSGTGLKVKRCG 406
              SDH+WL YL         +W  ES ++  LSF     +         +KVK CG
Sbjct: 974  -LSDHIWLFYLSFDYLKELKEWQNESFSNIELSFHSYERR---------VKVKNCG 1019

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126507|ref|XP_002319855.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222858231|gb|EEE95778.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/324 (46%), Positives = 209/324 (64%), Gaps = 23/324 (7%)

Query: 1    MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
            + CLREL LD T I ++  S   L+GLV L++  CKNL  +PS+I  LKSLK L++  C 
Sbjct: 1199 INCLRELRLDGTAIAKLSSSFHCLAGLVLLSMNNCKNLESIPSSIRGLKSLKRLDVSDCS 1258

Query: 61   KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            + +N+ E +G+VESLEE D SGT+IR PP+S FL+KNLK LSF+GC              
Sbjct: 1259 ELKNIPENLGEVESLEEFDASGTSIRQPPTSFFLLKNLKVLSFKGCK------------- 1305

Query: 121  INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
                R + +L   +LPSLSGL SL +LDL  C LGEGA+P DIG L SL++L LS+NNF+
Sbjct: 1306 ----RIAVNLTDQILPSLSGLCSLEELDLCACNLGEGAVPEDIGCLSSLRSLNLSRNNFI 1361

Query: 181  TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALK---LRKSS 237
            +LP SIN L  LEKL L+DC  L+SLP++P  V+KV+++GC  L  +   +K   L++S 
Sbjct: 1362 SLPKSINQLSRLEKLALKDCVMLESLPEVPLKVQKVKLDGCLKLKEIPDPIKLCSLKRSE 1421

Query: 238  CTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT 297
               ++  +     G+N + ++ML ++L+  S+P   F I VPG+EIP WF +Q++ SSI 
Sbjct: 1422 FKCLNCWELYMHNGQNNMGLNMLEKYLQ-GSSPRPGFGIAVPGNEIPGWFTHQSKESSIR 1480

Query: 298  VTRPS-YL-CNMNQVVGYAACRVF 319
            V  PS YL  + N  +G+AAC  F
Sbjct: 1481 VQMPSNYLDGDDNGWMGFAACAAF 1504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.302	0.110	0.361	2.3e-21
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.633	0.242	0.282	3.3e-19
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.355	0.142	0.340	5.8e-19
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.345	0.136	0.311	8e-19
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.529	0.218	0.287	2.6e-17
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.345	0.129	0.308	5.6e-17
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.150	0.057	0.416	6.5e-17
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.360	0.142	0.291	4.9e-16
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.427	0.129	0.289	9.6e-09
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.423	0.144	0.279	8.1e-08

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 60/166 (36%), Positives = 92/166 (55%)

Query:   159 IPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP-QLPPNVEKVR 217
             IP+ IGNL +L  L LS NNF  +PASI  L  L +L L +C+RLQ+LP +LP  +  + 
Sbjct:   970 IPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALPDELPRGLLYIY 1029

Query:   218 VNGCASLVTLLGALK---LRK---SSCTIIDFVDSLKLLGKNGLAISMLREFLEVVSA-P 270
             ++ C SLV++ G      LRK   S+C  +D    + L+ +N          L++ SA P
Sbjct:  1030 IHSCTSLVSISGCFNQYCLRKLVASNCYKLDQAAQI-LIHRN----------LKLESAKP 1078

Query:   271 SHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAAC 316
              H +    PGS+IP  F +Q  G S+ +  P    + + ++G++AC
Sbjct:  1079 EHSY---FPGSDIPTCFNHQVMGPSLNIQLPQSESS-SDILGFSAC 1120

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 91/322 (28%), Positives = 147/322 (45%)

Query:    12 TDIKEMPLSIELLSGLVQLTLKGCKNLVRLPXXXXXXXXXXXXXXXGCFKFENLLETVGQ 71
             T +KE+P  ++ ++ LV L L+GC +L+ LP               GC  F+   E +  
Sbjct:   692 TSLKELPDEMKDMTNLVFLNLRGCTSLLSLPKITTNSLKTLILS--GCSSFQTF-EVIS- 747

Query:    72 VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP-INLMRRSSDX 130
              E LE L ++GT I   P +I  +  L  L+ + C    +   C      +  ++ S   
Sbjct:   748 -EHLESLYLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCS 806

Query:   131 XXXXXXXXXXXXXXXXXXXXDCGLGEGAIPSDIGNLHSLKTLYLSKN-NFVTLPASINCL 189
                                 D G     +P  I +L SL+ L LS+N N  TL   +  +
Sbjct:   807 KLKIFPDVTAKMESLLVLLLD-GTSIAELPCSIFHLSSLRRLCLSRNDNIRTLRFDMGHM 865

Query:   190 FNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKL-----RKSSCTIIDFV 244
             F+L+ L+L+ CK L SLP LPPN++ +  +GC SL T+     L     +  S  I    
Sbjct:   866 FHLKWLELKYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFIFTNC 925

Query:   245 DSLKLLGKNGLAISMLREFLEVVSA----PSHKFSIVV----PGSEIPKWFMYQNEGSSI 296
               L+ + KN + IS +++  +++SA    P   +  ++    PG EIP WF +Q  GS +
Sbjct:   926 HELEQVSKNAI-ISYVQKKSKLMSADRYSPDFVYKSLIGTCFPGCEIPAWFNHQALGSVL 984

Query:   297 TVTRPSYLCNMNQVVGYAACRV 318
              +  P    N ++++G A C V
Sbjct:   985 ILELPQ-AWNSSRIIGIALCVV 1005

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
 Identities = 62/182 (34%), Positives = 92/182 (50%)

Query:   163 IGNLHSLKTLYLSKNNFVT-LPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC 221
             I  L SL+ L LS+NN ++ L   IN L++L+ L L+ CK L S+P LPPN+E +  +GC
Sbjct:   849 INGLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGC 908

Query:   222 ASLVTL---LGALKLRKS--SCTIIDFVDSLKLLGKNGLAI-----SML--REFLEVVSA 269
               L T+   +  LKL +   S  I    ++L+ + KN +       S L  R   +    
Sbjct:   909 EKLKTVASPMALLKLMEQVQSKFIFTNCNNLEQVAKNSITSYAQRKSQLDARRCYKEGGV 968

Query:   270 PSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVFHVPKHSTGIR 329
                 F    PGS++P WF YQ  GS++ +  P + C+ N++   A C V   P     I 
Sbjct:   969 SEALFIACFPGSDVPSWFNYQTFGSALRLKLPPHWCD-NRLSTIALCAVVTFPDTQDEIN 1027

Query:   330 RF 331
             RF
Sbjct:  1028 RF 1029

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
 Identities = 56/180 (31%), Positives = 90/180 (50%)

Query:   154 LGEGAIPSDIGNLHSLKTLYLSKNNFVT-LPASINCLFNLEKLKLEDCKRLQSLPQLPPN 212
             L E AI  D+  + S++ L L+KN  ++ LP  +N    L+ L L+ CK L  +PQLPPN
Sbjct:   828 LDETAI-KDMPKILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLTHVPQLPPN 886

Query:   213 VEKVRVNGCASLVT----LLGALKLRK-SSCTIIDFVDSLKLLGKNGLAISMLREFLEVV 267
             ++ + V+GC+SL T    L+ ++ ++  +S  I    + L+   K  + +   R+   + 
Sbjct:   887 LQYLNVHGCSSLKTVAKPLVCSIPMKHVNSSFIFTNCNELEQAAKEEIVVYAERKCHLLA 946

Query:   268 SA---------PSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRV 318
             SA         P   F    PG E+P WF +   GS +    P +  N N++ G A C V
Sbjct:   947 SALKRCDESCVPEILFCTSFPGCEMPSWFSHDAIGSMVEFELPPHW-NHNRLSGIALCVV 1005

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 217 (81.4 bits), Expect = 2.6e-17, Sum P(3) = 2.6e-17
 Identities = 76/264 (28%), Positives = 119/264 (45%)

Query:    65 LLETVGQVESLEELDISGTA-IRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLPFPI 121
             L  ++ +++SL  L +SG + +   P  I  + NL+           PPSS        I
Sbjct:   752 LPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLII 811

Query:   122 NLMRRSSDXXXXXXXXXXXXXXXXXXXXXD-CGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
              + R   D                       C L +G +P +IG+L SLK L LS+NNF 
Sbjct:   812 LMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFE 871

Query:   181 TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTI 240
              LP+SI  L  L+ L L+DC+RL  LP+LPP + ++ V+ C   +  +  L  ++     
Sbjct:   872 HLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVD-CHMALKFIHYLVTKRKKLHR 930

Query:   241 IDFVDSLKLLGKNGLAISMLREFLEV---VSAPSHKFSIVV----PGSE-IPKWFMYQNE 292
             +   D+      N  A +M +    +   +SA S   S+ V    P  E IP WF +Q  
Sbjct:   931 VKLDDAHNDTMYNLFAYTMFQNISSMRHDISA-SDSLSLTVFTGQPYPEKIPSWFHHQGW 989

Query:   293 GSSITVTRPSYLCNMNQVVGYAAC 316
              SS++V  P      ++ +G+A C
Sbjct:   990 DSSVSVNLPENWYIPDKFLGFAVC 1013

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 5.6e-17, Sum P(3) = 5.6e-17
 Identities = 57/185 (30%), Positives = 91/185 (49%)

Query:   151 DCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP 210
             +C L E   P  I  L S++ L LS N F  LP SI  L++L  L L+ CK L S+P LP
Sbjct:   857 NCHLCEW--PRGIYGLSSVRRLSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPMLP 914

Query:   211 PNVEKVRVNGCASL--VTLLGALKLRKSS---CTIIDFVDSLKL--LGKNGLAISMLREF 263
             PN++ +  +GC SL  +++L    L ++     T I F +  KL  + +N +  S  R+ 
Sbjct:   915 PNLQWLDAHGCISLETISILSDPLLAETEHLHSTFI-FTNCTKLYKVEENSIE-SYPRKK 972

Query:   264 LEVVSAPSHKFS----------IVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGY 313
             ++++S    ++           I  PG ++P WF ++  G  +    P +  N   + G 
Sbjct:   973 IQLMSNALARYEKGLALDVLIGICFPGWQVPGWFNHRTVGLELKQNLPRHW-NAGGLAGI 1031

Query:   314 AACRV 318
             A C V
Sbjct:  1032 ALCAV 1036

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 6.5e-17, Sum P(3) = 6.5e-17
 Identities = 30/72 (41%), Positives = 48/72 (66%)

Query:   161 SDIGNLHSLKTLYLSKNNFVT-LPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVN 219
             ++I  + SL+ L LSKN+ ++ LP +I+ L  L+ L L+ CK L S+P+LPPN++ +  +
Sbjct:   804 TEIPMISSLQCLCLSKNDHISSLPDNISQLSQLKWLDLKYCKSLTSIPKLPPNLQHLDAH 863

Query:   220 GCASLVTLLGAL 231
             GC SL T+   L
Sbjct:   864 GCCSLKTVSNPL 875

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
 Identities = 56/192 (29%), Positives = 102/192 (53%)

Query:   159 IPSDIGNLH---SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEK 215
             +P+ + + +   SL +L LS N+  +L A+I+ L++L+ L L++CK+L+S+  LPPN++ 
Sbjct:   876 LPNSLSDYYLPSSLLSLCLSGNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKC 935

Query:   216 VRVNGCASLVTL---LGALKLR-KSSCTIIDFVDSLKL--LGKNGLAISMLREFLEVVSA 269
             +  +GC SL  +   L  L +  K  CT I F +  KL  + ++ + IS      +++S 
Sbjct:   936 LDAHGCDSLEEVGSPLAVLMVTGKIHCTYI-FTNCNKLDQVAESNI-ISFTWRKSQMMSD 993

Query:   270 PSHKF-------SIV---VPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACRVF 319
               +++       S+V    PG E+P  F +Q  G+ +    P + C+ +++ G A C V 
Sbjct:   994 ALNRYNGGFVLESLVSTCFPGCEVPASFDHQAYGALLQTKLPRHWCD-SRLTGIALCAVI 1052

Query:   320 HVPKHSTGIRRF 331
               P +     RF
Sbjct:  1053 LFPDYQHQSNRF 1064

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 62/214 (28%), Positives = 90/214 (42%)

Query:     1 MECLRELLLDK-TDIKEMPLSIELLSGLVQLTLKGCKNLVRLPXXXXXXXXXXXXXXXGC 59
             ++CL +  L   +++  +P +I  +  L +L L G   +  LP               GC
Sbjct:   913 LKCLEKFFLSGCSNLSVLPENIGSMPCLKELLLDGTA-ISNLPYSIFRLQKLEKLSLMGC 971

Query:    60 FKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPF 119
                E L   VG + SLE+L +  TA+R  PSSI  +KNL+ L    C    +S S  +P 
Sbjct:   972 RSIEELPSCVGYLTSLEDLYLDDTALRNLPSSIGDLKNLQKLHLMRC----TSLST-IPE 1026

Query:   120 PIN-LMRRSSDXXXXXXXXXXXXXXXXXXXXXDCGLGE----GAIPSDIGNLHSLKTLYL 174
              IN LM                          D   G+      +PS IG L+SL  L L
Sbjct:  1027 TINKLMSLKELFINGSAVEELPIETGSLLCLTDLSAGDCKFLKQVPSSIGGLNSLLQLQL 1086

Query:   175 SKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
                    LP  I  L  + +L L +CK L++LP+
Sbjct:  1087 DSTPIEALPEEIGDLHFIRQLDLRNCKSLKALPK 1120

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 60/215 (27%), Positives = 95/215 (44%)

Query:     1 MECLRELLLDK-TDIKEMPLSIELLSGLVQLTLKGCKNLVRLPXXXXXXXXXXXXXXXGC 59
             ++ L +L L   +D+  +P +I  ++ L +L L G   +  LP               GC
Sbjct:   740 LKLLEKLFLSGCSDLSVLPENIGAMTSLKELLLDGTA-IKNLPESINRLQNLEILSLRGC 798

Query:    60 FKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPF 119
              K + L   +G ++SLE+L +  TA++  PSSI  +KNL+ L    C    +S S  +P 
Sbjct:   799 -KIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDLHLVRC----TSLS-KIPD 852

Query:   120 PINLMRR------SSDXXXXXXXXXXXXXXXXXXXXXDCGLGEGAIPSDIGNLHSLKTLY 173
              IN ++       +                       DC   +  +PS IG L+SL  L 
Sbjct:   853 SINELKSLKKLFINGSAVEELPLKPSSLPSLYDFSAGDCKFLK-QVPSSIGRLNSLLQLQ 911

Query:   174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
             LS      LP  I  L  + +L+L +CK L+ LP+
Sbjct:   912 LSSTPIEALPEEIGALHFIRELELRNCKFLKFLPK 946

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	472
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-18
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-14
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 102/381 (26%), Positives = 152/381 (39%), Gaps = 77/381 (20%)

Query: 4    LRELLL-DKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
            L  L L D + + E+P SI+ L+ L  L +  C+NL  LP+ IN LKSL  LNL GC + 
Sbjct: 659  LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRL 717

Query: 63   ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            ++  +      ++  LD+  TAI   PS++ L +NL  L    C                
Sbjct: 718  KSFPDIS---TNISWLDLDETAIEEFPSNLRL-ENLDELIL--CEMKSEK---------- 761

Query: 123  LMRRSSDLGAL--MLPSLSGLGSLTKLDLSDC-GLGEGAIPSDIGNLHSLKTLYLSK-NN 178
            L  R   L  L  ML       SLT+L LSD   L E  +PS I NLH L+ L +    N
Sbjct: 762  LWERVQPLTPLMTMLSP-----SLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCIN 814

Query: 179  FVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCA--------------SL 224
              TLP  IN L +LE L L  C RL++ P +  N+  + ++                 S 
Sbjct: 815  LETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSF 873

Query: 225  VTLLGALKLRKSSCTI--------IDFVD--SLKLLGKNGLAISMLREFLEVV----SAP 270
            + + G   L++ S  I        +DF D  +L     NG    +      +     S  
Sbjct: 874  LDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTV 933

Query: 271  SHKF-------------------SIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVV 311
               F                    +++ G E+P +F ++  G+S+T     ++       
Sbjct: 934  CINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFF 993

Query: 312  GYAACRVFHVPKHSTGIRRFY 332
             + AC V            F 
Sbjct: 994  RFRACAVVDSESFFIISVSFD 1014

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 47/244 (19%)

Query: 4   LRELLLDKT-DIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           LR + L  + ++KE+P  + + + L  L L  C +LV LPS+I  L  L+ L++  C   
Sbjct: 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694

Query: 63  ENL-----LETVGQVE---------------SLEELDISGTAIRCPPSSIFLMKNLKTLS 102
           E L     L+++ ++                ++  LD+  TAI   PS++ L +NL  L 
Sbjct: 695 EILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRL-ENLDELI 753

Query: 103 FRGCNGPPSSASCYLPFPINLMRRSSDLGAL--MLPSLSGLGSLTKLDLSDC-GLGEGAI 159
              C                L  R   L  L  ML       SLT+L LSD   L E  +
Sbjct: 754 L--CEMKSEK----------LWERVQPLTPLMTMLSP-----SLTRLFLSDIPSLVE--L 794

Query: 160 PSDIGNLHSLKTLYLSK-NNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRV 218
           PS I NLH L+ L +    N  TLP  IN L +LE L L  C RL++ P +  N+  + +
Sbjct: 795 PSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLNL 853

Query: 219 NGCA 222
           +   
Sbjct: 854 SRTG 857

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 14/253 (5%)

Query: 8   LLDKTDIKEMPLSIELLSGLVQLTLK-GCKNLVRLPSNINSLKSLKTLNLLG--CFKFEN 64
           LL  + I  +  S  LL+ L   +L      L    S +  L +L +L+L          
Sbjct: 74  LLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP 133

Query: 65  LLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLM 124
           L+  +    +L+ELD+S   I   PS +  + NLK L     +   S     L    NL 
Sbjct: 134 LIGLLK--SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND--LSDLPKLLSNLSNLN 189

Query: 125 RRS-SDLGALMLPSLSGLGS-LTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
               S      LP    L S L +LDLS+  + E  + S + NL +L  L LS N    L
Sbjct: 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDL 247

Query: 183 PASINCLFNLEKLKLEDCKRLQSLPQLPP--NVEKVRVNGCASLVTLLGALKLRKSSCTI 240
           P SI  L NLE L L    ++ S+  L    N+ ++ ++G +    L     L      +
Sbjct: 248 PESIGNLSNLETLDL-SNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELL 306

Query: 241 IDFVDSLKLLGKN 253
           ++ + +LK L   
Sbjct: 307 LNLLLTLKALELK 319

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 143 SLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDC 200
           +L  LDLS+  L    IP      L +LK L LS NN  ++   + + L +L  L L   
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 201 K 201
            
Sbjct: 59  N 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 37/220 (16%)

Query: 41  LPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKT 100
           LPS+++ L SL  L+        +  E +  +  L  LD++   +R   S +  + NL +
Sbjct: 62  LPSSLSRLLSLDLLSP-SGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTS 120

Query: 101 LSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL--GSLTKLDLSDCGLGEGA 158
           L                    N+           +P L GL   +L +LDLSD  +    
Sbjct: 121 LDLDN---------------NNITD---------IPPLIGLLKSNLKELDLSDNKIES-- 154

Query: 159 IPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK--RLQSLPQLPPNVEKV 216
           +PS + NL +LK L LS N+   LP  ++ L NL  L L   K   L    +L   +E++
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214

Query: 217 RV--NGCASLVTLLGALK----LRKSSCTIIDFVDSLKLL 250
            +  N    L++ L  LK    L  S+  + D  +S+  L
Sbjct: 215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 47/195 (24%)

Query: 16  EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESL 75
           E+P  I   S L  L L G   + ++P+++ +L SL+ L L       N L  VGQ+   
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA-----SNQL--VGQI--- 204

Query: 76  EELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML 135
                        P  +  MK+LK +              YL +        ++L   + 
Sbjct: 205 -------------PRELGQMKSLKWI--------------YLGY--------NNLSGEIP 229

Query: 136 PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEK 194
             + GL SL  LDL    L  G IPS +GNL +L+ L+L +N     +P SI  L  L  
Sbjct: 230 YEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288

Query: 195 LKLEDCKRLQSLPQL 209
           L L D      +P+L
Sbjct: 289 LDLSDNSLSGEIPEL 303

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.47
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.46
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.43
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.14
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.78
PRK15386	426	type III secretion protein GogB; Provisional	98.77
PLN03150	623	hypothetical protein; Provisional	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.66
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
PRK15386	426	type III secretion protein GogB; Provisional	98.58
PLN03150	623	hypothetical protein; Provisional	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.31
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.77
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.11
KOG4341	483	consensus F-box protein containing LRR [General fu	97.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.99
KOG4341	483	consensus F-box protein containing LRR [General fu	96.87
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.08
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.85
smart00370	26	LRR Leucine-rich repeats, outliers.	89.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.78
smart00370	26	LRR Leucine-rich repeats, outliers.	88.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.6
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.29

>PLN03210 Resistant to P

Probab=100.00  E-value=5.9e-36  Score=339.16  Aligned_cols=381  Identities=22%  Similarity=0.328  Sum_probs=265.4

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      .+|++|+|.++.+..+|..+..+++|+.|+|++|..++.+|. ++.+++|++|+|++|..+..+|..++++++|+.|+++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            578899999999999998899999999999999988999986 8889999999999999999999999999999999999


Q ss_pred             Cc-cCCCCCccccCCCCCcEEEecCCCCCCCCCCC---------------CCCc------chh-----------------
Q 012027           82 GT-AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC---------------YLPF------PIN-----------------  122 (472)
Q Consensus        82 ~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~---------------~~~~------~~~-----------------  122 (472)
                      +| .+..+|..+ ++++|+.|++++|..+...+..               .++.      ...                 
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            86 677888876 7899999999998644322110               0000      000                 


Q ss_pred             --------------hhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCC--------------------CCCC
Q 012027          123 --------------LMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDI--------------------GNLH  167 (472)
Q Consensus       123 --------------l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l--------------------~~l~  167 (472)
                                    +....+. ....+|. +.++++|+.|++++|... +.+|..+                    ...+
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~  846 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINL-ETLPTGINLESLESLDLSGCSRLRTFPDIST  846 (1153)
T ss_pred             cchhhhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCc-CeeCCCCCccccCEEECCCCCcccccccccc
Confidence                          0000000 1112343 677788888888887533 2355432                    1124


Q ss_pred             CCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC---CCccEEEEccCCCcccccccccccc---------
Q 012027          168 SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP---PNVEKVRVNGCASLVTLLGALKLRK---------  235 (472)
Q Consensus       168 ~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp---~~L~~L~~~~c~sL~~~~~~~~~~~---------  235 (472)
                      +|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+   ++|+.+++.+|.+|+.++.......         
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~  926 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH  926 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence            5667777777788899999999999999999999999998754   4667889999999987654211000         


Q ss_pred             --c-ccceeeecccccccCccchHHHHHHHHHhhccCCCCceEEEecCCCCCcccccCCCCcEEE-EEcCCCCCCCCcee
Q 012027          236 --S-SCTIIDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSIT-VTRPSYLCNMNQVV  311 (472)
Q Consensus       236 --~-~~~~~~f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~q~~g~si~-~~lp~~~~~~~~~~  311 (472)
                        . ......|.+|++++....+         +.   ......+++||.++|+||+||+.|++++ |++|+.|+ ...|.
T Consensus       927 ~~~p~~~~l~f~nC~~L~~~a~l---------~~---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~  993 (1153)
T PLN03210        927 SKLPSTVCINFINCFNLDQEALL---------QQ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFF  993 (1153)
T ss_pred             ccCCchhccccccccCCCchhhh---------cc---cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCcc
Confidence              0 0012358899988643221         11   1123467899999999999999999998 99999998 78899


Q ss_pred             EEEEEEEEecCCC-------CCceeeEeecCCCCceeeeeccccCCCCCCCeEEEEEeeCcccc----------ccc-cC
Q 012027          312 GYAACRVFHVPKH-------STGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYY----------CNV-KW  373 (472)
Q Consensus       312 gfa~c~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdHl~l~y~~~~~~~----------~~~-~~  373 (472)
                      ||++|+|+.+...       .+.+.|.+....+..+ +        ....+|+|+.|....++.          +.. .+
T Consensus       994 ~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1064 (1153)
T PLN03210        994 RFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHF-D--------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLA 1064 (1153)
T ss_pred             ceEEEEEEecCccccCCCceeEEEEEEEECCCCCcc-c--------cCCCceeEeeeccccceEEecccccccccccchh
Confidence            9999999976541       2355677766555443 1        224455555554332111          000 11


Q ss_pred             CcccceEEEEEeecccccCCCCCCCccEEEEccceeeecccc
Q 012027          374 HFESNHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEV  415 (472)
Q Consensus       374 ~~~~~~i~~~f~~~~~~~~~~~~~~~~~Vk~CGv~liy~~d~  415 (472)
                      +..++|+++.|.....       ...++||+||||++|+++.
T Consensus      1065 ~~~~~~~~~~f~~~~~-------~~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210       1065 ELNYDHVDIQFRLTNK-------NSQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred             ccCCceeeEEEEEecC-------CCCeEEEeeeEEEeccCCC
Confidence            2357788888876521       2347999999999997654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=2.6e-19  Score=202.34  Aligned_cols=220  Identities=26%  Similarity=0.290  Sum_probs=140.9

Q ss_pred             CCCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            1 MECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      +++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..++++++|++|++++|...+.+|..++++++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            356677777777665 5677788888888888888776667787788888888888888777777788888888888888


Q ss_pred             eeCccCC-CCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           80 ISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      +++|.+. .+|..++++++|+.|++++|......+  ...+.....+....+.+.+.....+..+++|+.|++++|.+. 
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-
Confidence            8888776 677778888888888888776432222  222222333333344443333333566666666666666664 


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC  221 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c  221 (472)
                      +.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..   .++|+.|++++|
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            446666666666666666666665 45555666666666666666544444421   134455554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=2.7e-18  Score=194.01  Aligned_cols=205  Identities=24%  Similarity=0.242  Sum_probs=149.4

Q ss_pred             CCCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            1 MECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      +++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            578999999999886 7788899999999999999987778898899999999999999888778899999999999999


Q ss_pred             eeCccCC-CCCccccCCCCCcEEEecCCCCCCCCCC--CCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           80 ISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSAS--CYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      +++|.+. .+|..++++++|+.|++++|......+.  ..+.....+....+.+.+.....+..+++|+.|++++|.+. 
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~-  321 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT-  321 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC-
Confidence            9999887 6788889999999999988864333221  12222233333344443322223566677777777777665 


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccC
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSL  206 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~l  206 (472)
                      +.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|+....+
T Consensus       322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence            456666667777777777777665 56666666666666666666544333

>PLN03210 Resistant to P

Probab=99.74  E-value=5.5e-17  Score=184.87  Aligned_cols=207  Identities=31%  Similarity=0.427  Sum_probs=147.5

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|.+.++.++.+|..+ .+.+|+.|+|.+|+ +..+|.++..+++|++|+|++|..+..+|. +..+++|++|++++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            5788888888888888877 57899999999976 888999999999999999999988888886 78899999999999


Q ss_pred             c-cCCCCCccccCCCCCcEEEecCCCCCCCCCCCC-CCcchhhhcc---------------------cCCCCcCCCCCCC
Q 012027           83 T-AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY-LPFPINLMRR---------------------SSDLGALMLPSLS  139 (472)
Q Consensus        83 ~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~l~~~---------------------~~~~~~~~l~~l~  139 (472)
                      | .+.++|.+++++++|+.|++++|..+...+... +..+..+...                     .+.+  ..+|...
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i--~~lP~~~  744 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI--EEFPSNL  744 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc--ccccccc
Confidence            7 567999999999999999999998766655432 1111111111                     1110  0111100


Q ss_pred             -------------------------------CCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC-CCccCCcccC
Q 012027          140 -------------------------------GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKN-NFVTLPASIN  187 (472)
Q Consensus       140 -------------------------------~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n-~~~~lp~~i~  187 (472)
                                                     ..++|+.|++++|... ..+|..++.+++|+.|+|++| ++..+|..+ 
T Consensus       745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-  822 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-  822 (1153)
T ss_pred             cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence                                           1235666666666543 347777777777777777776 466777665 


Q ss_pred             CCCCcceeeccCccccccCCCCCCCccEE
Q 012027          188 CLFNLEKLKLEDCKRLQSLPQLPPNVEKV  216 (472)
Q Consensus       188 ~l~~L~~L~l~~c~~L~~lp~lp~~L~~L  216 (472)
                      .+++|+.|++++|..++.+|..+.+++.|
T Consensus       823 ~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L  851 (1153)
T PLN03210        823 NLESLESLDLSGCSRLRTFPDISTNISDL  851 (1153)
T ss_pred             CccccCEEECCCCCccccccccccccCEe
Confidence            57777777777777777666544433333

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.71  E-value=3.8e-19  Score=177.85  Aligned_cols=225  Identities=26%  Similarity=0.351  Sum_probs=150.0

Q ss_pred             CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCc------------------
Q 012027            2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF------------------   62 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l------------------   62 (472)
                      +++-+|+|++|+|..||.+ +.+|+.|-+|+|++|+ +..+|+.+.+|..|++|.|++|...                  
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            4566788888888888876 4678888888888865 8888888888888888888887432                  


Q ss_pred             -------hhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCC-CCCCCcchhhhcccCCCCcCC
Q 012027           63 -------ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA-SCYLPFPINLMRRSSDLGALM  134 (472)
Q Consensus        63 -------~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  134 (472)
                             ..+|.++..|.+|..++++.|.+..+|.-+.++.+|+.|+|++|....... ...+.....+-.+.+.++  .
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt--~  282 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT--V  282 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc--c
Confidence                   235666777777777777777777778777888888888888876332110 011111112222233222  3


Q ss_pred             CCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC---CC
Q 012027          135 LPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ---LP  210 (472)
Q Consensus       135 l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~---lp  210 (472)
                      +|+ +..++.|+.|.+.+|.+.-+.+|+.||.+..|+.+..++|++.-+|.++..|.+|+.|.|++|. |-.+|+   +.
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL  361 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLL  361 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhc
Confidence            455 6666777777777776655567777777777777777777777777777777777777776543 445664   34


Q ss_pred             CCccEEEEccCCCccccccc
Q 012027          211 PNVEKVRVNGCASLVTLLGA  230 (472)
Q Consensus       211 ~~L~~L~~~~c~sL~~~~~~  230 (472)
                      +.|+.|++++.++|..-|.+
T Consensus       362 ~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             CCcceeeccCCcCccCCCCc
Confidence            56677777777777655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1e-18  Score=149.11  Aligned_cols=179  Identities=28%  Similarity=0.432  Sum_probs=132.1

Q ss_pred             eeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccC
Q 012027           15 KEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFL   94 (472)
Q Consensus        15 ~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~   94 (472)
                      .++|. +-++.+...|.|+.|+ +..+|+.|..|++|++|++++| .++.+|..+..|+.|+.|+++-|.+..+|..++.
T Consensus        24 ~~~~g-Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPG-LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hhccc-ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence            34443 5556677777777765 6777777777888888888774 4677787788888888888877777777888888


Q ss_pred             CCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEE
Q 012027           95 MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY  173 (472)
Q Consensus        95 l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~  173 (472)
                      ++-|+.|+|..+....                      ..+|. +..+..|+.|.|++|.+  +.+|.+++.+++|+.|.
T Consensus       101 ~p~levldltynnl~e----------------------~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~  156 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILS  156 (264)
T ss_pred             Cchhhhhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEe
Confidence            8888888877665222                      12343 55667777888888877  45889999999999999


Q ss_pred             cCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCc
Q 012027          174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASL  224 (472)
Q Consensus       174 Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL  224 (472)
                      +..|++-++|..++.+++|+.|.+.++. |+   -+||.|-.|++.+-++.
T Consensus       157 lrdndll~lpkeig~lt~lrelhiqgnr-l~---vlppel~~l~l~~~k~v  203 (264)
T KOG0617|consen  157 LRDNDLLSLPKEIGDLTRLRELHIQGNR-LT---VLPPELANLDLVGNKQV  203 (264)
T ss_pred             eccCchhhCcHHHHHHHHHHHHhcccce-ee---ecChhhhhhhhhhhHHH
Confidence            9999999999999999999999999875 33   34666666666554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.61  E-value=2.9e-17  Score=164.54  Aligned_cols=180  Identities=27%  Similarity=0.395  Sum_probs=123.1

Q ss_pred             CCccEEEeeCCC--CeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTD--IKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~--l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      .+|++|.+++++  +..+|.++..|.+|+.++|+.|. +..+|..+.++.+|+.|+||+| .+..+.-..+...+|++|+
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLN  274 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhc
Confidence            344445555443  22455555555555555555432 5555555555555555555553 2333444444455555555


Q ss_pred             eeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCC
Q 012027           80 ISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      |+.|.++.+|+.+.+|++|+.|.+.+|                      .++...+|+ ++.+..|+.+..++|++  +.
T Consensus       275 lSrNQLt~LP~avcKL~kL~kLy~n~N----------------------kL~FeGiPSGIGKL~~Levf~aanN~L--El  330 (1255)
T KOG0444|consen  275 LSRNQLTVLPDAVCKLTKLTKLYANNN----------------------KLTFEGIPSGIGKLIQLEVFHAANNKL--EL  330 (1255)
T ss_pred             cccchhccchHHHhhhHHHHHHHhccC----------------------cccccCCccchhhhhhhHHHHhhcccc--cc
Confidence            555555555555555555555555544                      445557888 99999999999999998  45


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCC
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP  207 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp  207 (472)
                      +|..++.+..|+.|.|+.|.+.++|..|.-|+.|+.|++..|++|..=|
T Consensus       331 VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             CchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            9999999999999999999999999999999999999999999987433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.59  E-value=1.2e-17  Score=159.61  Aligned_cols=192  Identities=30%  Similarity=0.361  Sum_probs=108.4

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|+.+.+.+.++|++|+.+-.|..|+..+|. +.++|.++.++.+|..|++.++ ++..+|+..-+|+.|++|+...
T Consensus       115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~  192 (565)
T KOG0472|consen  115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS  192 (565)
T ss_pred             hhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence            3445555555555555555555555555555433 5556665666666666666663 3444555444577777777777


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC--CCCCCCcCEEeccCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS--LSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      |-+..+|..++.+.+|..|++..|+......+.......++....+.+.  .+|.  ..++++|..||+.+|++.+  +|
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdNklke--~P  268 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDNKLKE--VP  268 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeecccccccc--Cc
Confidence            7777777777777777777777766333222222222222222222222  2232  4456666666666666643  66


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~  201 (472)
                      +.+..+++|++||+++|.++.+|.+++++ .|+.|-+.+++
T Consensus       269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            66666666666666666666666666666 66666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=1.5e-17  Score=141.98  Aligned_cols=161  Identities=27%  Similarity=0.427  Sum_probs=138.1

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |.++..|.|++|.++.+|+.|+.|.+|+.|++.+|+ ++.+|.+|+.|+.|+.|++.- .++..+|..+|.++.|+.|++
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence            456788889999999999999999999999999876 889999999999999999987 457788999999999999999


Q ss_pred             eCccCC--CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027           81 SGTAIR--CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      .+|.+.  .+|..+..++.|+.|+|+++....                       .+|.++.+++|+.|.+.+|.+.+  
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~-----------------------lp~dvg~lt~lqil~lrdndll~--  164 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-----------------------LPPDVGKLTNLQILSLRDNDLLS--  164 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCccc-----------------------CChhhhhhcceeEEeeccCchhh--
Confidence            998877  688888889999999988876322                       24558899999999999998864  


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcccCC
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFVTLPASINC  188 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~  188 (472)
                      +|..++.++.|++|.+.||.++.+|..+++
T Consensus       165 lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  165 LPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence            899999999999999999999999976654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.54  E-value=2.2e-17  Score=157.86  Aligned_cols=104  Identities=28%  Similarity=0.480  Sum_probs=71.4

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ..|.+|++.++++.++|+.|+.+.+++.|+.+.++ +..+|..++.+.+|+.|+++.+ .+..+|+.++.+-.|+.|+..
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcc
Confidence            45666777777777777777777777777777754 6667777777777777777764 345566667777777777777


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .|.+..+|..++++.+|..|++.+++
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~  171 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNK  171 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccc
Confidence            77777777777666666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.53  E-value=3.6e-14  Score=152.70  Aligned_cols=205  Identities=22%  Similarity=0.363  Sum_probs=124.0

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|+|++|.|+.+|..+.  .+|+.|++++|. +..+|..+.  .+|+.|+|++|. +..+|..+.  .+|+.|++++
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFH  271 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence            46666777776666665443  467777777654 556665442  367777777764 345666553  4677777777


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      |.+..+|..+.  ++|+.|++++|... ..+.........+....+.+..  +|. .-.++|+.|++++|.+..  +|..
T Consensus       272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~--LP~-~l~~sL~~L~Ls~N~Lt~--LP~~  343 (754)
T PRK15370        272 NKISCLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTA--LPE-TLPPGLKTLEAGENALTS--LPAS  343 (754)
T ss_pred             CccCccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCcccc--CCc-cccccceeccccCCcccc--CChh
Confidence            77777776553  47777777777532 2221111112223333443332  222 112567888888887753  6665


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCcccccc
Q 012027          163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~~  229 (472)
                      +.  ++|+.|+|++|+++.+|..+.  ++|+.|+|++|. +..+|. ++.+|+.|++.++ +|..++.
T Consensus       344 l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N-~L~~LP~  405 (754)
T PRK15370        344 LP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNA-LTNLPENLPAALQIMQASRN-NLVRLPE  405 (754)
T ss_pred             hc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCc-CCCCCHhHHHHHHHHhhccC-CcccCch
Confidence            53  678888888888887776553  578888888875 445553 4556777777775 4555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.49  E-value=1.8e-13  Score=147.36  Aligned_cols=204  Identities=24%  Similarity=0.340  Sum_probs=142.0

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      .+..+|+++++.++.+|..+.  ++|+.|+|++|+ +..+|..+.  .+|++|++++|. +..+|..+.  .+|+.|+|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence            356789999999999997663  689999999975 889998664  699999999975 667887663  579999999


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      +|.+..+|..+.  .+|+.|++++|... ..+......+..+....+.+..  +|. +  .++|+.|++++|.+..  +|
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~Lt~--LP  320 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSLTA--LP  320 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCcccc--CC
Confidence            999999998765  58999999987633 2332222222233333443332  222 1  1357777777777653  55


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCccccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~  228 (472)
                      ..+.  ++|+.|++++|.++.+|..+.  ++|+.|++++|+ +..+|. +|++|+.|++.+| .|..++
T Consensus       321 ~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N-~Lt~LP  383 (754)
T PRK15370        321 ETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN-ALTNLP  383 (754)
T ss_pred             cccc--ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhcCCcCEEECCCC-cCCCCC
Confidence            5432  577777888887777776653  678888888774 455664 5667778887776 354444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.47  E-value=7e-13  Score=142.21  Aligned_cols=196  Identities=25%  Similarity=0.339  Sum_probs=107.9

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|++.+|+|+.+|.   .+++|++|+|++|+ ++.+|..   .++|+.|++++|. +..+|..   .++|+.|++++
T Consensus       223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~  291 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFG  291 (788)
T ss_pred             CCCEEEccCCcCCCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcC
Confidence            34555555555555543   23556666666543 4555542   3455566666543 4445543   24566777777


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      |.++.+|..   +++|+.|++++|.... .+. .......+....+.+..  +|.+  ..+|+.|+|++|++..  +|..
T Consensus       292 N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~-lp~~L~~L~Ls~N~L~~--LP~l--p~~Lq~LdLS~N~Ls~--LP~l  360 (788)
T PRK15387        292 NQLTSLPVL---PPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTS--LPTL--PSGLQELSVSDNQLAS--LPTL  360 (788)
T ss_pred             Ccccccccc---ccccceeECCCCcccc-CCC-CcccccccccccCcccc--cccc--ccccceEecCCCccCC--CCCC
Confidence            777777652   4678888888875332 111 11111122223333321  2321  1368888888887753  6653


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCccccc
Q 012027          163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~  228 (472)
                         .++|+.|++++|.+..+|..   ..+|+.|++++|+ +..+|..|++|+.|+++++. |..++
T Consensus       361 ---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~-LssIP  418 (788)
T PRK15387        361 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPVLPSELKELMVSGNR-LTSLP  418 (788)
T ss_pred             ---CcccceehhhccccccCccc---ccccceEEecCCc-ccCCCCcccCCCEEEccCCc-CCCCC
Confidence               24566667777777766643   2456777777664 55666666677777776653 44444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.46  E-value=7.9e-15  Score=146.36  Aligned_cols=196  Identities=26%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +|+.|+|.+|-|+++-+ .+..++.|+.|||+.|. +..+|. ++..=.++++|+|++|....---..+..+.+|..|.|
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            57777777777776643 36777777777777754 555553 2333456777777776544333344556667777777


Q ss_pred             eCccCCCCCccccC-CCCCcEEEecCCCCCC--CCCCCCCCcchhhh------------------------cccCCCCcC
Q 012027           81 SGTAIRCPPSSIFL-MKNLKTLSFRGCNGPP--SSASCYLPFPINLM------------------------RRSSDLGAL  133 (472)
Q Consensus        81 ~~~~i~~lp~~i~~-l~~L~~L~L~~~~~~~--~~~~~~~~~~~~l~------------------------~~~~~~~~~  133 (472)
                      +.|.|+.+|..+.+ |++|+.|+|..|....  ...+..++.+..+.                        ...+++...
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            77777777654443 7777777776665211  11122222222222                        222222222


Q ss_pred             CCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCc
Q 012027          134 MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDC  200 (472)
Q Consensus       134 ~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c  200 (472)
                      .--.+.++++|+.|++++|.+. ..-++.....++|++|+|+.|+++++++ ++..|+.|+.|+|++|
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             hcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            2223556677777777777765 3345666677777888888887777764 3444445555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.43  E-value=1e-14  Score=145.52  Aligned_cols=198  Identities=26%  Similarity=0.245  Sum_probs=107.1

Q ss_pred             CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCcc-CcccCCCCC------------------------CCEEE
Q 012027            2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRL-PSNINSLKS------------------------LKTLN   55 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~------------------------L~~L~   55 (472)
                      .+|..|-|+.|.|+.+|.- |.+|++|+.|+|..|. ++.. -..+.+|.+                        +++|+
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence            4567777788888877754 5568888888887764 3332 123444444                        44445


Q ss_pred             ccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCc
Q 012027           56 LLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGA  132 (472)
Q Consensus        56 Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~  132 (472)
                      |..|+...---.++.++++|+.|++++|+|..+ +.++....+|+.|+|+.|....-.+  +..+..+.++-...+.+..
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~  355 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH  355 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence            544433222234455666777777777777654 5556666777777777665322111  1111111122222222222


Q ss_pred             CCCCCCCCCCCcCEEeccCCCCCCCCCC---CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCcc
Q 012027          133 LMLPSLSGLGSLTKLDLSDCGLGEGAIP---SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCK  201 (472)
Q Consensus       133 ~~l~~l~~l~~L~~L~L~~~~l~~~~lp---~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~  201 (472)
                      ..--.+.++++|++|||+.|.++ +.+-   ..+..+++|+.|+|.||+++.+|. .+..+..|+.|+|.+|.
T Consensus       356 l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  356 LAEGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             HHhhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence            11112555666666666666543 2222   224556666666666666666664 45666666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.40  E-value=1.3e-14  Score=151.90  Aligned_cols=215  Identities=25%  Similarity=0.310  Sum_probs=139.4

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|+.+.|.+..+-. -..-.+|++++++.+. +..+|++++.+.+|+.|++..|. +..+|..+..+++|+.|.+..
T Consensus       220 ~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             chheeeeccCcceeecc-ccccccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence            45555555555553221 2234567777777754 66677777777777777777654 366677677777777777777


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCC----------------------------CCCcchhhhcccCCCCcCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC----------------------------YLPFPINLMRRSSDLGALM  134 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~~~  134 (472)
                      |.+..+|.....+++|+.|+|..|.... .+..                            .......+....+.++...
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            7777777777777777777776654211 1110                            0011112445567777777


Q ss_pred             CCCCCCCCCcCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCccCCcccCC----------------------CCC
Q 012027          135 LPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVTLPASINC----------------------LFN  191 (472)
Q Consensus       135 l~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~~~~lp~~i~~----------------------l~~  191 (472)
                      .|-+.++.+|+.|+|++|.+.  .+|+. +.++..|++|+||||+++.||..+..                      ++.
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~q  453 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQ  453 (1081)
T ss_pred             hhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCc
Confidence            888999999999999999995  48875 78999999999999999888866544                      455


Q ss_pred             cceeeccCcccc-ccCC-CCC-CCccEEEEccCCC
Q 012027          192 LEKLKLEDCKRL-QSLP-QLP-PNVEKVRVNGCAS  223 (472)
Q Consensus       192 L~~L~l~~c~~L-~~lp-~lp-~~L~~L~~~~c~s  223 (472)
                      |+.+|++.|..- ..+| .+| +.|++|+++|.+.
T Consensus       454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            555555544311 1122 245 7788888877765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=2.2e-12  Score=138.39  Aligned_cols=199  Identities=25%  Similarity=0.282  Sum_probs=135.6

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+|++|+|+.+|..   .++|+.|++.+|. +..+|..   +.+|+.|++++|. +..+|..   +++|++|++
T Consensus       241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdL  309 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSV  309 (788)
T ss_pred             CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeEC
Confidence            36899999999999999853   4688899999876 7777763   3568888888864 5567763   467888888


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..+|...   .+|+.|++++|.... .+. ....+..+....+.+..  +|.+  ..+|+.|++++|.+..  +|
T Consensus       310 S~N~L~~Lp~lp---~~L~~L~Ls~N~L~~-LP~-lp~~Lq~LdLS~N~Ls~--LP~l--p~~L~~L~Ls~N~L~~--LP  378 (788)
T PRK15387        310 SDNQLASLPALP---SELCKLWAYNNQLTS-LPT-LPSGLQELSVSDNQLAS--LPTL--PSELYKLWAYNNRLTS--LP  378 (788)
T ss_pred             CCCccccCCCCc---ccccccccccCcccc-ccc-cccccceEecCCCccCC--CCCC--Ccccceehhhcccccc--Cc
Confidence            888888877633   346666677665321 111 01112223334444332  3332  3467888888888853  77


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCcccccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~~  229 (472)
                      ..   .++|+.|+|++|.++.+|...   ++|+.|++++|+ +..+|.+|..|+.|++.++ .++.+|.
T Consensus       379 ~l---~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~  439 (788)
T PRK15387        379 AL---PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPE  439 (788)
T ss_pred             cc---ccccceEEecCCcccCCCCcc---cCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccCh
Confidence            54   357888999999888888643   578888998875 6678888888888888764 3555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.22  E-value=2.4e-12  Score=126.82  Aligned_cols=201  Identities=18%  Similarity=0.203  Sum_probs=122.4

Q ss_pred             CCccEEEeeCCCCe-----eccccccCCcCCcEEEeecCcCC------CccCcccCCCCCCCEEEccCCCCchhhhhhhC
Q 012027            2 ECLRELLLDKTDIK-----EMPLSIELLSGLVQLTLKGCKNL------VRLPSNINSLKSLKTLNLLGCFKFENLLETVG   70 (472)
Q Consensus         2 ~~L~~L~L~~~~l~-----~lp~si~~L~~L~~L~L~~c~~l------~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~   70 (472)
                      .+|++|+++++.++     .++..+...++|+.|+++++..-      ..++..+..+.+|+.|++++|......+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            45777777777763     35555666777777777775422      12334455677778888877766544444444


Q ss_pred             CCCC---CCEEeeeCccCCC-----CCccccCC-CCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCC-CCCC
Q 012027           71 QVES---LEELDISGTAIRC-----PPSSIFLM-KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP-SLSG  140 (472)
Q Consensus        71 ~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~~  140 (472)
                      .+.+   |++|++++|.+..     +...+..+ ++|+.|++++|.......                   ..+. .+..
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------------------~~~~~~~~~  163 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-------------------EALAKALRA  163 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-------------------HHHHHHHHh
Confidence            4443   7788887776652     23344555 777777777776321000                   0011 1445


Q ss_pred             CCCcCEEeccCCCCCCCC---CCCCCCCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCccccc--------
Q 012027          141 LGSLTKLDLSDCGLGEGA---IPSDIGNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKRLQ--------  204 (472)
Q Consensus       141 l~~L~~L~L~~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~~L~--------  204 (472)
                      ++.|++|++++|++.+..   ++..+..+++|+.|+|++|.+.     .++..+..+++|+.|++++|+.-.        
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  243 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS  243 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence            667888888888776322   2233455578888888888775     344556777888888888875321        


Q ss_pred             cCCCCCCCccEEEEccC
Q 012027          205 SLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       205 ~lp~lp~~L~~L~~~~c  221 (472)
                      .++...+.|+.|++.+|
T Consensus       244 ~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         244 ALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHhccCCCceEEEccCC
Confidence            11111257788888777

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=1.2e-12  Score=130.80  Aligned_cols=168  Identities=29%  Similarity=0.417  Sum_probs=100.2

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      |+.|.|..|.|..+|..+.+|..|.+|||+.|. +..+|..++.|. |++|.+++ +++..+|+.++.+..|..|+.+.|
T Consensus       100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN  176 (722)
T ss_pred             HHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh
Confidence            444555556666666666666666666666654 566666665443 66666665 345666666666666666666666


Q ss_pred             cCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCC
Q 012027           84 AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI  163 (472)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l  163 (472)
                      .+..+|+.++++.+|+.|.+..|..+.                       .++.+..++ |..||++.|++..  +|..|
T Consensus       177 ei~slpsql~~l~slr~l~vrRn~l~~-----------------------lp~El~~Lp-Li~lDfScNkis~--iPv~f  230 (722)
T KOG0532|consen  177 EIQSLPSQLGYLTSLRDLNVRRNHLED-----------------------LPEELCSLP-LIRLDFSCNKISY--LPVDF  230 (722)
T ss_pred             hhhhchHHhhhHHHHHHHHHhhhhhhh-----------------------CCHHHhCCc-eeeeecccCceee--cchhh
Confidence            666666666666666666665554221                       111133222 6666666666643  66666


Q ss_pred             CCCCCCCEEEcCCCCCccCCccc---CCCCCcceeeccCc
Q 012027          164 GNLHSLKTLYLSKNNFVTLPASI---NCLFNLEKLKLEDC  200 (472)
Q Consensus       164 ~~l~~L~~L~Ls~n~~~~lp~~i---~~l~~L~~L~l~~c  200 (472)
                      ..|+.|++|.|.+|.+.+=|..|   +...-.++|+..-|
T Consensus       231 r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            66666666666666666666554   33444556666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=2.4e-11  Score=123.67  Aligned_cols=176  Identities=34%  Similarity=0.483  Sum_probs=125.4

Q ss_pred             CccEEEeeCCCCeeccccccCCc-CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            3 CLRELLLDKTDIKEMPLSIELLS-GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~-~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      .++.|++.++.+.++++..+.+. +|+.|++++++ +..+|..+..+++|+.|+++.|. +..+|...+.+++|+.|+++
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheecc
Confidence            46777777777777777666664 77777777755 66776667777777777777753 55666666667777777777


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      ++.+..+|..+..+..|+.|.++++....                       .+..+..+..+..|.+..+.+..  ++.
T Consensus       195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----------------------~~~~~~~~~~l~~l~l~~n~~~~--~~~  249 (394)
T COG4886         195 GNKISDLPPEIELLSALEELDLSNNSIIE-----------------------LLSSLSNLKNLSGLELSNNKLED--LPE  249 (394)
T ss_pred             CCccccCchhhhhhhhhhhhhhcCCccee-----------------------cchhhhhcccccccccCCceeee--ccc
Confidence            77777777776666677777777764111                       12235666777777777776642  577


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccC
Q 012027          162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSL  206 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~l  206 (472)
                      .++.+++++.|++++|.++.++. ++.+.+|+.|+++++.....+
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             hhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence            78888888888888888888886 888888888888887654433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.14  E-value=6.9e-12  Score=123.56  Aligned_cols=201  Identities=20%  Similarity=0.214  Sum_probs=140.2

Q ss_pred             CCccEEEeeCCCCee-------ccccccCCcCCcEEEeecCcCCCccCcccCCCCC---CCEEEccCCCCc----hhhhh
Q 012027            2 ECLRELLLDKTDIKE-------MPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKS---LKTLNLLGCFKF----ENLLE   67 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~-------lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~---L~~L~Ls~c~~l----~~lp~   67 (472)
                      ++|++|+++++.+..       ++..+..+++|+.|++++|......+..+..+.+   |++|++++|...    ..+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            568999999887653       3455778899999999998865455555544554   999999998754    23455


Q ss_pred             hhCCC-CCCCEEeeeCccCC-----CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCC
Q 012027           68 TVGQV-ESLEELDISGTAIR-----CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL  141 (472)
Q Consensus        68 ~l~~l-~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l  141 (472)
                      .+..+ ++|+.|++++|.++     .++..+..+++|+.|++++|......    ..              .....+..+
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~--------------~l~~~l~~~  192 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG----IR--------------ALAEGLKAN  192 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH----HH--------------HHHHHHHhC
Confidence            66777 89999999999988     34555677889999999988632100    00              001113455


Q ss_pred             CCcCEEeccCCCCCCC---CCCCCCCCCCCCCEEEcCCCCCcc--C---Cccc-CCCCCcceeeccCcccc--------c
Q 012027          142 GSLTKLDLSDCGLGEG---AIPSDIGNLHSLKTLYLSKNNFVT--L---PASI-NCLFNLEKLKLEDCKRL--------Q  204 (472)
Q Consensus       142 ~~L~~L~L~~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~~~~--l---p~~i-~~l~~L~~L~l~~c~~L--------~  204 (472)
                      ++|+.|++++|.+.+.   .+...+..+++|++|++++|.+..  +   ...+ ...+.|+.|++++|..-        +
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~  272 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE  272 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence            7899999999987532   134456778999999999998873  1   1111 13589999999999642        2


Q ss_pred             cCCCCCCCccEEEEccC
Q 012027          205 SLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       205 ~lp~lp~~L~~L~~~~c  221 (472)
                      .++.. +.|+.++++++
T Consensus       273 ~~~~~-~~L~~l~l~~N  288 (319)
T cd00116         273 VLAEK-ESLLELDLRGN  288 (319)
T ss_pred             HHhcC-CCccEEECCCC
Confidence            33444 57888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.13  E-value=8.9e-13  Score=138.31  Aligned_cols=194  Identities=27%  Similarity=0.331  Sum_probs=126.6

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      .+|++++++.+.++.+|+.++.+.+|+.|+...|. +..+|..+...++|+.|.+..| .++.+|+..+.+++|++|+|.
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence            36888999999999999888999999999998865 6777777777777777777764 466677777777777777777


Q ss_pred             CccCCCCCcc--------------------------------------------------ccCCCCCcEEEecCCCCCCC
Q 012027           82 GTAIRCPPSS--------------------------------------------------IFLMKNLKTLSFRGCNGPPS  111 (472)
Q Consensus        82 ~~~i~~lp~~--------------------------------------------------i~~l~~L~~L~L~~~~~~~~  111 (472)
                      .|.+..+|..                                                  +.+.++|+.|+|++|... .
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~  397 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S  397 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence            7776665532                                                  223445555555554311 1


Q ss_pred             CCCC---CCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--cCCcc
Q 012027          112 SASC---YLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV--TLPAS  185 (472)
Q Consensus       112 ~~~~---~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~--~lp~~  185 (472)
                      .+.+   .+.....+..+++.++.  +|. +..+..|++|...+|.+.  .+| .+..++.|+.+|++.|+++  .+|..
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            1111   11111223333333332  222 444555555555555553  367 6888999999999999987  45544


Q ss_pred             cCCCCCcceeeccCccccc
Q 012027          186 INCLFNLEKLKLEDCKRLQ  204 (472)
Q Consensus       186 i~~l~~L~~L~l~~c~~L~  204 (472)
                      ... ++|++||+++|.++.
T Consensus       473 ~p~-p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  473 LPS-PNLKYLDLSGNTRLV  490 (1081)
T ss_pred             CCC-cccceeeccCCcccc
Confidence            333 899999999998753

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=6.8e-11  Score=129.52  Aligned_cols=225  Identities=24%  Similarity=0.358  Sum_probs=128.5

Q ss_pred             CCccEEEeeCCC--Ceecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            2 ECLRELLLDKTD--IKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         2 ~~L~~L~L~~~~--l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +.|+.|-+.++.  +..++.. |..++.|++|||++|..+..+|.+|+.|-+|++|+++++ .+..+|..+++++.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence            346677777664  5555543 566777888888877777778877777888888888774 466777777777788888


Q ss_pred             eeeCccCCC-CCccccCCCCCcEEEecCCC-CCCCCCCCCCCcchhhhcccCCCCc-CCCCCCCCCCCcC----EEeccC
Q 012027           79 DISGTAIRC-PPSSIFLMKNLKTLSFRGCN-GPPSSASCYLPFPINLMRRSSDLGA-LMLPSLSGLGSLT----KLDLSD  151 (472)
Q Consensus        79 ~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~l~~l~~L~----~L~L~~  151 (472)
                      ++..+.... +|..+..|.+|++|.+..-. .........+..+..+......... ..+..+..+..|.    .+.+.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~  703 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG  703 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence            777775443 33334447777777775533 0000000000000000000000000 0001111111121    222222


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-----cc-C-CCCCcceeeccCccccccCC--CCCCCccEEEEccCC
Q 012027          152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-----SI-N-CLFNLEKLKLEDCKRLQSLP--QLPPNVEKVRVNGCA  222 (472)
Q Consensus       152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-----~i-~-~l~~L~~L~l~~c~~L~~lp--~lp~~L~~L~~~~c~  222 (472)
                      |..  ...+..++.+.+|+.|.+.++++.....     .. . .+++|..+.+.+|..++.+.  ..|++|+.|.+..|.
T Consensus       704 ~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  704 CSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             ccc--ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence            332  2356667788888888888887753321     11 1 14567777778887777666  357899999999988


Q ss_pred             Ccccccc
Q 012027          223 SLVTLLG  229 (472)
Q Consensus       223 sL~~~~~  229 (472)
                      -++.+..
T Consensus       782 ~~e~~i~  788 (889)
T KOG4658|consen  782 LLEDIIP  788 (889)
T ss_pred             ccccCCC
Confidence            7776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=6.9e-12  Score=125.43  Aligned_cols=185  Identities=25%  Similarity=0.331  Sum_probs=129.3

Q ss_pred             EEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCC
Q 012027            7 LLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus         7 L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      .+|+.|.+.++|..+..+-.|..|.|+.|. +..+|..+++|..|.+|+|+.| .+..+|..+..++ |+.|-+++|.++
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~  156 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLT  156 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccc
Confidence            455556666666666666666666666543 5666666666666666666663 3455666666554 666666666666


Q ss_pred             CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCC
Q 012027           87 CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGN  165 (472)
Q Consensus        87 ~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~  165 (472)
                      .+|..|+.+..|..|+.+.|...                        .+|+ ++++.+|+.|.+..|++..  +|..++.
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~------------------------slpsql~~l~slr~l~vrRn~l~~--lp~El~~  210 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQ------------------------SLPSQLGYLTSLRDLNVRRNHLED--LPEELCS  210 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhh------------------------hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhC
Confidence            66666666666666666665421                        2444 8899999999999999964  9999985


Q ss_pred             CCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC------CCCCccEEEEccCC
Q 012027          166 LHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ------LPPNVEKVRVNGCA  222 (472)
Q Consensus       166 l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~------lp~~L~~L~~~~c~  222 (472)
                      | .|..||++.|++..||..+.+++.|++|-|.+|+ |++=|.      .-.-.++|++.-|.
T Consensus       211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             C-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence            5 4899999999999999999999999999999876 333221      11124677777773

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.99  E-value=1.5e-11  Score=118.08  Aligned_cols=200  Identities=23%  Similarity=0.254  Sum_probs=130.3

Q ss_pred             ccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh---------------
Q 012027            4 LRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE---------------   67 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~---------------   67 (472)
                      -..+.|+.|+|+.||+. |+.+++|+.|||+.|..-..-|.++.+|.+|-.|-+.++.++..+|.               
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            35678888888888765 78888899999988775455577788888888887777666665543               


Q ss_pred             ----------hhCCCCCCCEEeeeCccCCCCCc-cccCCCCCcEEEecCCCCCCC--------------CCCCCCCc--c
Q 012027           68 ----------TVGQVESLEELDISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPS--------------SASCYLPF--P  120 (472)
Q Consensus        68 ----------~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~--------------~~~~~~~~--~  120 (472)
                                .+..|++|..|.+.+|.+..++. ++..+..++.+.+..+...-.              ...+....  +
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence                      34456666666667777766665 566677777776655441100              00111000  0


Q ss_pred             hh--------------------h--hcccCCCCcCCCCC--CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 012027          121 IN--------------------L--MRRSSDLGALMLPS--LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSK  176 (472)
Q Consensus       121 ~~--------------------l--~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~  176 (472)
                      .+                    +  .....+......|.  |..+++|+.|+|++|.++ +.-+.+|..+..+++|.|.+
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCc
Confidence            00                    0  01112222223344  778889999999999886 34456788888999999999


Q ss_pred             CCCccCCc-ccCCCCCcceeeccCccccc
Q 012027          177 NNFVTLPA-SINCLFNLEKLKLEDCKRLQ  204 (472)
Q Consensus       177 n~~~~lp~-~i~~l~~L~~L~l~~c~~L~  204 (472)
                      |++..+-. .+..++.|+.|+|.+|+.-.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~  336 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITT  336 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEE
Confidence            98876544 45788889999998876433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=5.9e-10  Score=108.65  Aligned_cols=106  Identities=18%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             CCccEEEeeCCCCeeccc--cccCCcCCcEEEeecCcC--CCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCC
Q 012027            2 ECLRELLLDKTDIKEMPL--SIELLSGLVQLTLKGCKN--LVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLE   76 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~--si~~L~~L~~L~L~~c~~--l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~   76 (472)
                      ++|++..|+++.+...+.  ....|++++.|||+.|=.  ...+-.-...|++|+.|+|+.|....-.. ..-..+..|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            456777777766654442  356677777777776421  11222223456777777777754321111 1112456677


Q ss_pred             EEeeeCccCC--CCCccccCCCCCcEEEecCCC
Q 012027           77 ELDISGTAIR--CPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        77 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .|.|++|++.  .+-.....+++|+.|+|.+|.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            7777777766  333334456677777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=9.2e-10  Score=112.04  Aligned_cols=160  Identities=32%  Similarity=0.408  Sum_probs=135.1

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|+++++++..+|..++.+++|+.|++++|+ +..+|...+.++.|+.|+++++ .+..+|..++.+..|++|.+++
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcC
Confidence            7999999999999998779999999999999987 8899987768999999999995 5778898877788899999999


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      |.+...+..+.+++++..|.+.++.....                       ...+..+++++.|+++.|.+++  ++. 
T Consensus       219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-----------------------~~~~~~l~~l~~L~~s~n~i~~--i~~-  272 (394)
T COG4886         219 NSIIELLSSLSNLKNLSGLELSNNKLEDL-----------------------PESIGNLSNLETLDLSNNQISS--ISS-  272 (394)
T ss_pred             CcceecchhhhhcccccccccCCceeeec-----------------------cchhccccccceeccccccccc--ccc-
Confidence            98888888899999999998777653220                       1226778889999999999975  655 


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccCCCC
Q 012027          163 IGNLHSLKTLYLSKNNFVTLPASINCLF  190 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~  190 (472)
                      ++.+.+|+.|+++++.+..++.......
T Consensus       273 ~~~~~~l~~L~~s~n~~~~~~~~~~~~~  300 (394)
T COG4886         273 LGSLTNLRELDLSGNSLSNALPLIALLL  300 (394)
T ss_pred             ccccCccCEEeccCccccccchhhhccc
Confidence            9999999999999999987665444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=1.8e-09  Score=118.52  Aligned_cols=150  Identities=27%  Similarity=0.359  Sum_probs=109.9

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcC-CCccCcc-cCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKN-LVRLPSN-INSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~-l~~lp~~-i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ..+...+-++.+..++.+.. .++|+.|-+.++.. +..++.. +..++.|++|||++|..+..+|+.++++-+|++|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             heeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            35677777788877776554 34799999988763 5666654 677999999999999999999999999999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCC-CC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGE-GA  158 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~-~~  158 (472)
                      ++|.|..+|..+++|+.|.+|++..+..+..                       ++. ...+++|++|.+....... ..
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-----------------------~~~i~~~L~~Lr~L~l~~s~~~~~~~  659 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLES-----------------------IPGILLELQSLRVLRLPRSALSNDKL  659 (889)
T ss_pred             cCCCccccchHHHHHHhhheecccccccccc-----------------------ccchhhhcccccEEEeeccccccchh
Confidence            9999999999999999999999988764432                       123 3346777777775543211 11


Q ss_pred             CCCCCCCCCCCCEEEcCC
Q 012027          159 IPSDIGNLHSLKTLYLSK  176 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~  176 (472)
                      .-..+..+.+|+.|....
T Consensus       660 ~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  660 LLKELENLEHLENLSITI  677 (889)
T ss_pred             hHHhhhcccchhhheeec
Confidence            222344455555555433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.78  E-value=3e-09  Score=94.47  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=18.0

Q ss_pred             CeeccccccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccc
Q 012027           14 IKEMPLSIELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSI   92 (472)
Q Consensus        14 l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i   92 (472)
                      |++++. +.+..+++.|+|.+|. +..+.. ++ .+.+|++|++++|. +..+ +.+..+++|++|++++|.|+.+...+
T Consensus         9 i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen    9 IEQIAQ-YNNPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNNQ-ITKL-EGLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             -----------------------------S---TT-TT--EEE-TTS---S---TT----TT--EEE--SS---S-CHHH
T ss_pred             cccccc-cccccccccccccccc-cccccc-hhhhhcCCCEEECCCCC-Cccc-cCccChhhhhhcccCCCCCCccccch
Confidence            444443 4445556666666654 444432 43 35566666666653 2333 23455666666666666666554333


Q ss_pred             -cCCCCCcEEEecCCC
Q 012027           93 -FLMKNLKTLSFRGCN  107 (472)
Q Consensus        93 -~~l~~L~~L~L~~~~  107 (472)
                       ..+++|+.|++++|.
T Consensus        84 ~~~lp~L~~L~L~~N~   99 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNK   99 (175)
T ss_dssp             HHH-TT--EEE-TTS-
T ss_pred             HHhCCcCCEEECcCCc
Confidence             234555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.77  E-value=3.7e-08  Score=97.89  Aligned_cols=73  Identities=26%  Similarity=0.484  Sum_probs=49.3

Q ss_pred             ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc-cCCCCCccccCCCCCc
Q 012027           21 IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT-AIRCPPSSIFLMKNLK   99 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~   99 (472)
                      +..+.+++.|++++| .++.+|. +  ..+|++|.+++|..+..+|+.+  ..+|++|++++| .+..+|.+      |+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence            445677888888887 5777773 2  3468888888888877777655  357788888776 56666643      45


Q ss_pred             EEEecC
Q 012027          100 TLSFRG  105 (472)
Q Consensus       100 ~L~L~~  105 (472)
                      .|++.+
T Consensus       116 ~L~L~~  121 (426)
T PRK15386        116 SLEIKG  121 (426)
T ss_pred             eEEeCC
Confidence            555543

>PLN03150 hypothetical protein; Provisional

Probab=98.71  E-value=2.6e-08  Score=106.82  Aligned_cols=104  Identities=23%  Similarity=0.316  Sum_probs=74.7

Q ss_pred             ccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            4 LRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         4 L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      ++.|+|+++.+. .+|..++.|++|+.|+|++|.....+|..++.+++|++|+|++|...+.+|+.++++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            566777777776 5677777777777777777765567777777777777777777776667777777777777777777


Q ss_pred             ccCC-CCCccccCC-CCCcEEEecCCC
Q 012027           83 TAIR-CPPSSIFLM-KNLKTLSFRGCN  107 (472)
Q Consensus        83 ~~i~-~lp~~i~~l-~~L~~L~L~~~~  107 (472)
                      |.+. .+|..++.+ .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            7776 667666553 455666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.71  E-value=1.5e-09  Score=101.09  Aligned_cols=54  Identities=28%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLG   58 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~   58 (472)
                      .|++|+|++|.|+.+..++.-+++++.|+++.|. +..+.. +..|.+|+.|+|++
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~  338 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSG  338 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeeccc
Confidence            3556666666666666666666666666666644 333332 44455555555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.7e-09  Score=105.53  Aligned_cols=181  Identities=22%  Similarity=0.245  Sum_probs=111.7

Q ss_pred             ccCCcCCcEEEeecCcCCCccC--cccCCCCCCCEEEccCCCC--chhhhhhhCCCCCCCEEeeeCccCCCCCcc--ccC
Q 012027           21 IELLSGLVQLTLKGCKNLVRLP--SNINSLKSLKTLNLLGCFK--FENLLETVGQVESLEELDISGTAIRCPPSS--IFL   94 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~Ls~c~~--l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~--i~~   94 (472)
                      =.++.+|+.+.|.+|. ....+  .....+++++.|||++|-.  ...+......+++|+.|+++.|.+...-++  -..
T Consensus       117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            3567888888888865 33333  2455688888888888632  233556677788888888888877644322  124


Q ss_pred             CCCCcEEEecCCCCCCCCC---CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 012027           95 MKNLKTLSFRGCNGPPSSA---SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT  171 (472)
Q Consensus        95 l~~L~~L~L~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~  171 (472)
                      +++|+.|.|++|.......   ...++....+....+.......-+...++.|++|+|++|++.+...-...+.++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            6788888888886321100   1123333334444443222112224446678888888887754222245677888888


Q ss_pred             EEcCCCCCcc--CCcc-----cCCCCCcceeeccCccc
Q 012027          172 LYLSKNNFVT--LPAS-----INCLFNLEKLKLEDCKR  202 (472)
Q Consensus       172 L~Ls~n~~~~--lp~~-----i~~l~~L~~L~l~~c~~  202 (472)
                      |+++.+.+.+  +|+.     ...+++|++|++..|+-
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            8888887763  3443     35678888888887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.66  E-value=2e-09  Score=103.74  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=72.8

Q ss_pred             eCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC-ccCCC
Q 012027           10 DKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG-TAIRC   87 (472)
Q Consensus        10 ~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-~~i~~   87 (472)
                      ++-+++++|..+  -..-+.|.|..|+ ++.+|+ ++..+++|+.|+|+.|..-..-|..+..+.+|..|-+.+ |.|+.
T Consensus        54 r~~GL~eVP~~L--P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   54 RGKGLTEVPANL--PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             cCCCcccCcccC--CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            445677888533  3467788898876 888886 688999999999999877666789999999988887777 89999


Q ss_pred             CCcc-ccCCCCCcEEEecCC
Q 012027           88 PPSS-IFLMKNLKTLSFRGC  106 (472)
Q Consensus        88 lp~~-i~~l~~L~~L~L~~~  106 (472)
                      +|.. +++|.+|+.|.+.-|
T Consensus       131 l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChh
Confidence            9865 455666666666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.62  E-value=3e-08  Score=88.08  Aligned_cols=101  Identities=27%  Similarity=0.336  Sum_probs=40.7

Q ss_pred             CccEEEeeCCCCeecccccc-CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhh-CCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPLSIE-LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L   80 (472)
                      .+++|+|+++.|+.+.. ++ .+.+|+.|+|++|. ++.++. +..++.|++|++++|. +..+.+.+ ..+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ----------------S---TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccc-hhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence            57899999999998854 66 68999999999987 778875 7889999999999965 45565444 46899999999


Q ss_pred             eCccCCCCC--ccccCCCCCcEEEecCCC
Q 012027           81 SGTAIRCPP--SSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~  107 (472)
                      ++|.|..+-  ..+..+++|+.|++.+|.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            999998653  346778999999999986

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=5.9e-10  Score=103.69  Aligned_cols=105  Identities=22%  Similarity=0.233  Sum_probs=76.1

Q ss_pred             CccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh--hhhhCCCCCCCEE
Q 012027            3 CLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL--LETVGQVESLEEL   78 (472)
Q Consensus         3 ~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l--p~~l~~l~~L~~L   78 (472)
                      .|+.|||+...|+  .+...+..+.+|+-|.|++...-..+-..|.+-.+|+.|+|++|+.+.+.  --.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3678888888877  56666788899999999887655555566777788999999999887653  3456778888889


Q ss_pred             eeeCccCCC--CCccccCC-CCCcEEEecCCC
Q 012027           79 DISGTAIRC--PPSSIFLM-KNLKTLSFRGCN  107 (472)
Q Consensus        79 ~L~~~~i~~--lp~~i~~l-~~L~~L~L~~~~  107 (472)
                      +++.|....  +-..+.+. +.|+.|+++||.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR  297 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence            888886552  12222222 567778888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.58  E-value=3.5e-07  Score=91.07  Aligned_cols=61  Identities=30%  Similarity=0.578  Sum_probs=32.3

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE   67 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~   67 (472)
                      ++++.|++++|.|+.+|.   ...+|+.|++++|..++.+|..+  ..+|++|++++|..+..+|+
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence            345556666555555551   22345566666655555555433  23556666665555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=1.2e-07  Score=101.82  Aligned_cols=69  Identities=33%  Similarity=0.523  Sum_probs=35.3

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCC
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLP  207 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp  207 (472)
                      +..+++|+.|+|++|++. +.+|..++.+++|+.|+|++|++. .+|..++.+++|+.|+|++|.....+|
T Consensus       438 i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             HhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence            444555555555555543 345555555555555555555554 445555555555555555554444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.56  E-value=1.3e-08  Score=94.94  Aligned_cols=103  Identities=31%  Similarity=0.329  Sum_probs=68.4

Q ss_pred             CCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccC
Q 012027           72 VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD  151 (472)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~  151 (472)
                      .+.|++|||++|.|+++-.++.-++.++.|+++.|....                        ..++..+++|+.|||++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~------------------------v~nLa~L~~L~~LDLS~  338 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT------------------------VQNLAELPQLQLLDLSG  338 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceee------------------------ehhhhhcccceEeeccc
Confidence            356778888888888887777777888888887776332                        22355667777777777


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027          152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~  201 (472)
                      |.+++  +.-.-..+-+++.|.|++|.+..+. +++.|..|..|++++|+
T Consensus       339 N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  339 NLLAE--CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             chhHh--hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence            76643  3333345566677777777766654 56666777777776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.41  E-value=1.7e-08  Score=96.15  Aligned_cols=181  Identities=24%  Similarity=0.244  Sum_probs=122.9

Q ss_pred             CCccEEEeeCCCCe--ec---cccccCCcCCcEEEeecCcCCCcc--------------CcccCCCCCCCEEEccCCCCc
Q 012027            2 ECLRELLLDKTDIK--EM---PLSIELLSGLVQLTLKGCKNLVRL--------------PSNINSLKSLKTLNLLGCFKF   62 (472)
Q Consensus         2 ~~L~~L~L~~~~l~--~l---p~si~~L~~L~~L~L~~c~~l~~l--------------p~~i~~L~~L~~L~Ls~c~~l   62 (472)
                      +.|++|+|++|.+.  .+   -.-|..+..|++|.|.+|. +...              -.-+.+-..|+++...+|..-
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            57888888888765  22   2235668888888888886 3211              112334567888888886533


Q ss_pred             h----hhhhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcC
Q 012027           63 E----NLLETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGAL  133 (472)
Q Consensus        63 ~----~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  133 (472)
                      .    .+...+...+.|+.+.+..|.|..     +-..+.++++|+.|+|++|.....                   .+.
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-------------------gs~  231 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-------------------GSV  231 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH-------------------HHH
Confidence            2    255667778899999999988762     234567889999999998762211                   000


Q ss_pred             CCCC-CCCCCCcCEEeccCCCCCCCCC---CCCC-CCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCccc
Q 012027          134 MLPS-LSGLGSLTKLDLSDCGLGEGAI---PSDI-GNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       134 ~l~~-l~~l~~L~~L~L~~~~l~~~~l---p~~l-~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~~  202 (472)
                      .+.. ++.|++|++|++++|.+....-   -+.+ ...++|+.|.+.+|.++     .+-.++...+.|+.|+|++|..
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            1112 5667899999999998864221   1222 34789999999999887     3445677789999999999864

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=4.4e-08  Score=100.29  Aligned_cols=32  Identities=38%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             CCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027          169 LKTLYLSKNNFVTLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       169 L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c  200 (472)
                      |+.+++++|.+..++..+..+..+..|++.++
T Consensus       234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             HHHHhcccCccccccccccccccccccchhhc
Confidence            66666677766666555666666666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.31  E-value=7.3e-07  Score=64.93  Aligned_cols=58  Identities=28%  Similarity=0.390  Sum_probs=43.2

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCC
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCF   60 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~   60 (472)
                      ++|++|++++|+|+.+|+ .+..+++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            578888888888888875 46778888888888766 45554 456778888888887764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.08  E-value=3.3e-06  Score=61.42  Aligned_cols=59  Identities=25%  Similarity=0.333  Sum_probs=32.7

Q ss_pred             cCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCcc
Q 012027           25 SGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTA   84 (472)
Q Consensus        25 ~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~   84 (472)
                      ++|++|++++|+ +..+|. .+..+++|++|++++|....--|..+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            356666666653 555553 45556666666666544332223455666666666666654

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.04  E-value=3.5e-07  Score=87.29  Aligned_cols=38  Identities=29%  Similarity=0.512  Sum_probs=16.7

Q ss_pred             CCCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCc
Q 012027          163 IGNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c  200 (472)
                      +..+++|+.|||..|-|+     .+-..+..+++|+.|++++|
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            344455555555555443     12222333444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=8.3e-06  Score=54.88  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS   43 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~   43 (472)
                      ++|++|++++|+|+.+|+.+++|++|++|++++|+ +..++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            57899999999999998889999999999999986 555553

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.93  E-value=8.9e-07  Score=90.70  Aligned_cols=129  Identities=28%  Similarity=0.349  Sum_probs=71.0

Q ss_pred             CcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEe
Q 012027           24 LSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSF  103 (472)
Q Consensus        24 L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L  103 (472)
                      +..++.+++..+. +..+-..+..+++|+.|++.++. +..+...+..|++|++|++++|.|..+.. +..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhh-hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence            4555555555543 33333335566677777776643 44444445666777777777777766543 455556777777


Q ss_pred             cCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCcc
Q 012027          104 RGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVT  181 (472)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~~~~  181 (472)
                      .+|....                        +..+..+.+|+.+++++|.+..  +... +..+.+++.+.+.+|.+..
T Consensus       148 ~~N~i~~------------------------~~~~~~l~~L~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISD------------------------ISGLESLKSLKLLDLSYNRIVD--IENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchh------------------------ccCCccchhhhcccCCcchhhh--hhhhhhhhccchHHHhccCCchhc
Confidence            6665221                        2223345566666666665542  2222 3555666666666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1.6e-05  Score=53.47  Aligned_cols=33  Identities=39%  Similarity=0.554  Sum_probs=19.6

Q ss_pred             CCCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027          168 SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       168 ~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c  200 (472)
                      +|++|++++|+++.+|..+++|++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            456666666666666655666666666666665

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=8.2e-07  Score=83.08  Aligned_cols=108  Identities=25%  Similarity=0.304  Sum_probs=74.1

Q ss_pred             CCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCc--ccCCCCCCCEEEccCCCCchhhhhh-hCC-CCCCC
Q 012027            2 ECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPS--NINSLKSLKTLNLLGCFKFENLLET-VGQ-VESLE   76 (472)
Q Consensus         2 ~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~-l~~L~   76 (472)
                      ..|+.|.|.|..+. .+-..|+.=.+|+.|||+.|..++....  -+.+++.|..|+|++|......-.. +.. -++|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            46888999998887 5555688889999999999987775432  2467899999999999765432111 111 25788


Q ss_pred             EEeeeCccCC----CCCccccCCCCCcEEEecCCCCC
Q 012027           77 ELDISGTAIR----CPPSSIFLMKNLKTLSFRGCNGP  109 (472)
Q Consensus        77 ~L~L~~~~i~----~lp~~i~~l~~L~~L~L~~~~~~  109 (472)
                      .|+++|+.-.    .+..-..++++|..|||++|..+
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l  326 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML  326 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence            8999987421    22222345667777777766543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.77  E-value=3.5e-07  Score=94.66  Aligned_cols=42  Identities=36%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCC
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF  179 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~  179 (472)
                      +.++.+|+.||+++|-+.+-.-...+..+..|..|.|.||.+
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            445555556666655443211122244455555555655544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=1.1e-05  Score=75.80  Aligned_cols=88  Identities=15%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCC--cccCCCCCcceeeccCccccccCCCCCCCccEEEE
Q 012027          141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRV  218 (472)
Q Consensus       141 l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp--~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~  218 (472)
                      ++++..+-+..|.+....--.....++.+-.|+|+.+++.++.  ..+..++.|..|.+.+++.+..+..  .-=+.|-+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llI  275 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLI  275 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEE
Confidence            4667777777776543333344566777888999999988654  3678899999999999887766654  11223445


Q ss_pred             ccCCCccccccc
Q 012027          219 NGCASLVTLLGA  230 (472)
Q Consensus       219 ~~c~sL~~~~~~  230 (472)
                      ...+.++.+.++
T Consensus       276 aRL~~v~vLNGs  287 (418)
T KOG2982|consen  276 ARLTKVQVLNGS  287 (418)
T ss_pred             eeccceEEecCc
Confidence            555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.46  E-value=3e-06  Score=87.98  Aligned_cols=99  Identities=26%  Similarity=0.210  Sum_probs=54.4

Q ss_pred             CCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCC
Q 012027           75 LEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL  154 (472)
Q Consensus        75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l  154 (472)
                      |...+.++|++..+-.++.-++.|+.|+|+.|+...                        ...+..++.|++|||++|.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~------------------------v~~Lr~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK------------------------VDNLRRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh------------------------hHHHHhcccccccccccchh
Confidence            444455555555555556666666666666655211                        11244556666666666666


Q ss_pred             CCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027          155 GEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       155 ~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c  200 (472)
                      ..  +|..-..--.|+.|.|++|.++++- +|.+|.+|+.||+++|
T Consensus       222 ~~--vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  222 RH--VPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYN  264 (1096)
T ss_pred             cc--ccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchhHh
Confidence            42  4432111122666666666666554 5666666666666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=3.9e-05  Score=82.67  Aligned_cols=155  Identities=28%  Similarity=0.251  Sum_probs=95.8

Q ss_pred             CcCCcEEEeecCcCCCccC-ccc-CCCCCCCEEEccCCCCc-hhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcE
Q 012027           24 LSGLVQLTLKGCKNLVRLP-SNI-NSLKSLKTLNLLGCFKF-ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKT  100 (472)
Q Consensus        24 L~~L~~L~L~~c~~l~~lp-~~i-~~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~  100 (472)
                      -.+|++|++++...+..-. ..+ ..|++|+.|.++|=... ..+-....+.++|..||+++|.++.+ ..|++|++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            3578888888744332211 112 24788888888873221 22445556788899999999998887 77888999998


Q ss_pred             EEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC-CC----CCCCCCCCCCEEEcC
Q 012027          101 LSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA-IP----SDIGNLHSLKTLYLS  175 (472)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~-lp----~~l~~l~~L~~L~Ls  175 (472)
                      |.+.+-.....                     ..+..+.++++|+.||+|........ +.    +.-..|+.|+.||.|
T Consensus       200 L~mrnLe~e~~---------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  200 LSMRNLEFESY---------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HhccCCCCCch---------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            88776331110                     12233667888999999887543221 11    112347889999999


Q ss_pred             CCCCc--cCCcccCCCCCcceeeccCc
Q 012027          176 KNNFV--TLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       176 ~n~~~--~lp~~i~~l~~L~~L~l~~c  200 (472)
                      |+.+.  .+-..+..-++|+.+.+-+|
T Consensus       259 gTdi~~~~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  259 GTDINEEILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             CcchhHHHHHHHHHhCccHhhhhhhhh
Confidence            88776  22223344455555544433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.26  E-value=1.5e-05  Score=66.58  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=82.5

Q ss_pred             ccEEEeeCCCCeecccc---ccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            4 LRELLLDKTDIKEMPLS---IELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~s---i~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      +..|+|+.|.|-.++..   +.....|...+|++|. ++.+|..+. +.+.+++|+++. +.+..+|+.+..|+.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence            45678888887766655   4455667777999976 788887654 445789999998 46788999999999999999


Q ss_pred             eeCccCCCCCccccCCCCCcEEEecCCCC
Q 012027           80 ISGTAIRCPPSSIFLMKNLKTLSFRGCNG  108 (472)
Q Consensus        80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~  108 (472)
                      ++.|.+...|.-|..|.+|..|+..++..
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            99999999998888899999998887753

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.12  E-value=0.00073  Score=60.32  Aligned_cols=100  Identities=20%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             cEEEeeCCCCeecccccc-CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIE-LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      ++++|++..+..+-. ++ -+.+...+||.+|. +..++. +..+..|.+|.|.+|.....-|..-.-+++|+.|.+.+|
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            345666655543322 22 24567788888865 555554 556888888888886655444443344577888999888


Q ss_pred             cCCCCC--ccccCCCCCcEEEecCCC
Q 012027           84 AIRCPP--SSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        84 ~i~~lp--~~i~~l~~L~~L~L~~~~  107 (472)
                      .|.++-  .-+..++.|++|.+-+|.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCc
Confidence            888652  235567788888887776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.11  E-value=5.5e-05  Score=63.25  Aligned_cols=87  Identities=17%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             CccEEEeeCCCCeecccccc-CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            3 CLRELLLDKTDIKEMPLSIE-LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      .|...+|++|.++.+|+.+. ..+.++.|||++|+ +..+|..+..++.|+.|+++.|. +...|+.+..+.+|-.|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence            46778999999999999874 55699999999976 89999999999999999999965 66788888889999999999


Q ss_pred             CccCCCCCcc
Q 012027           82 GTAIRCPPSS   91 (472)
Q Consensus        82 ~~~i~~lp~~   91 (472)
                      ++++.++|..
T Consensus       132 ~na~~eid~d  141 (177)
T KOG4579|consen  132 ENARAEIDVD  141 (177)
T ss_pred             CCccccCcHH
Confidence            9999998865

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.05  E-value=9.4e-06  Score=79.42  Aligned_cols=105  Identities=24%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             ccEEEeeCCC---CeeccccccCCcCCcEEEeecCcCCCccC--cccCCCCCCCEEEccCCCCchhh--hhhhCCCCCCC
Q 012027            4 LRELLLDKTD---IKEMPLSIELLSGLVQLTLKGCKNLVRLP--SNINSLKSLKTLNLLGCFKFENL--LETVGQVESLE   76 (472)
Q Consensus         4 L~~L~L~~~~---l~~lp~si~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~Ls~c~~l~~l--p~~l~~l~~L~   76 (472)
                      |+.|.++|+.   .+.+-....+++++++|++.+|++++.-.  ..-..+..|++|++..|..+...  -.....+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            6778888763   22333445678888888888888665321  11134678888888888776542  22345678888


Q ss_pred             EEeeeCc-cCCC--CCccccCCCCCcEEEecCCCC
Q 012027           77 ELDISGT-AIRC--PPSSIFLMKNLKTLSFRGCNG  108 (472)
Q Consensus        77 ~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~  108 (472)
                      +|+++.+ .|+.  +-.-..+++.|+.+.+.||..
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e  254 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE  254 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhccccc
Confidence            8888876 3442  333345566677777777763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.99  E-value=0.00041  Score=74.89  Aligned_cols=103  Identities=23%  Similarity=0.349  Sum_probs=50.8

Q ss_pred             CCCccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchh--hhhhhCCCCCCC
Q 012027            1 MECLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN--LLETVGQVESLE   76 (472)
Q Consensus         1 l~~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~   76 (472)
                      ||+|+.|.+.+-.+.  ++-.-..++++|..||++++. +..+ .++++|++|++|.+.+ -.++.  --..+.++++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence            355555555554332  222223456666666666633 4444 4466666666666554 22221  112345566666


Q ss_pred             EEeeeCccCCCCCcc-------ccCCCCCcEEEecCC
Q 012027           77 ELDISGTAIRCPPSS-------IFLMKNLKTLSFRGC  106 (472)
Q Consensus        77 ~L~L~~~~i~~lp~~-------i~~l~~L~~L~L~~~  106 (472)
                      .||+|......-+..       -..|+.|+.||.++.
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            666666543322211       112566666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.87  E-value=5.5e-05  Score=74.15  Aligned_cols=226  Identities=19%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             CCCccEEEeeCCC-Ceec-cccc-cCCcCCcEEEeecCcCCCccC--cccCCCCCCCEEEccCCCCchh--hhhhhCCCC
Q 012027            1 MECLRELLLDKTD-IKEM-PLSI-ELLSGLVQLTLKGCKNLVRLP--SNINSLKSLKTLNLLGCFKFEN--LLETVGQVE   73 (472)
Q Consensus         1 l~~L~~L~L~~~~-l~~l-p~si-~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~l~   73 (472)
                      ++|++.|.+.++. |+.- -.++ ..+++|++|+|..|.+++..-  .-...+++|++|++++|..+..  +-....+++
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~  242 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK  242 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence            3677777777763 3311 1122 457788888888877666432  1123467788888888765543  222234455


Q ss_pred             CCCEEeeeCccCCCC---CccccCCCCCcEEEecCCCCCCCCCCC----CCCcchhhhc-ccCCCCcCCCCC-CCCCCCc
Q 012027           74 SLEELDISGTAIRCP---PSSIFLMKNLKTLSFRGCNGPPSSASC----YLPFPINLMR-RSSDLGALMLPS-LSGLGSL  144 (472)
Q Consensus        74 ~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~~~~~~~~----~~~~~~~l~~-~~~~~~~~~l~~-l~~l~~L  144 (472)
                      .|+.+.+.||.-.++   -..-..+.-+..+++..|..+.....-    .......+.. ...+.+...+-. -.+..+|
T Consensus       243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L  322 (483)
T KOG4341|consen  243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL  322 (483)
T ss_pred             hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence            555555554322111   011112222333333344211110000    0000000000 000111111111 2345778


Q ss_pred             CEEeccCCC-CCCCCCCCCCCCCCCCCEEEcCCCCCc---cCCcccCCCCCcceeeccCccccccC--------CCCCCC
Q 012027          145 TKLDLSDCG-LGEGAIPSDIGNLHSLKTLYLSKNNFV---TLPASINCLFNLEKLKLEDCKRLQSL--------PQLPPN  212 (472)
Q Consensus       145 ~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~~~---~lp~~i~~l~~L~~L~l~~c~~L~~l--------p~lp~~  212 (472)
                      +.|-++.|. +++..+-..-.+.+.|+.+++.++...   ++-..-.+++.|+.|.+++|......        ..-...
T Consensus       323 ~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~  402 (483)
T KOG4341|consen  323 QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG  402 (483)
T ss_pred             EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc
Confidence            888888885 332112222245678888888877543   34444457888888888888765433        122245


Q ss_pred             ccEEEEccCCCccc
Q 012027          213 VEKVRVNGCASLVT  226 (472)
Q Consensus       213 L~~L~~~~c~sL~~  226 (472)
                      ++.+.+++|+....
T Consensus       403 l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  403 LEVLELDNCPLITD  416 (483)
T ss_pred             cceeeecCCCCchH
Confidence            66677777766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.62  E-value=0.00099  Score=62.10  Aligned_cols=190  Identities=19%  Similarity=0.209  Sum_probs=108.8

Q ss_pred             ccCCcCCcEEEeecCcCCCc----cCcccCCCCCCCEEEccCCCC----------chhhhhhhCCCCCCCEEeeeCccCC
Q 012027           21 IELLSGLVQLTLKGCKNLVR----LPSNINSLKSLKTLNLLGCFK----------FENLLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~~----lp~~i~~L~~L~~L~Ls~c~~----------l~~lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      +.-+..++.++|++|+.-+.    +...|.+-++|++.++++-..          +..+...+-.++.|+..+|+.|++.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34467777788887763332    333455566777777765211          1123344567788888888888877


Q ss_pred             -CCCc----cccCCCCCcEEEecCCCCCCCCCCCCC-CcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           87 -CPPS----SIFLMKNLKTLSFRGCNGPPSSASCYL-PFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        87 -~lp~----~i~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                       +.|.    .|.+-+.|++|.+++|.. .+.....+ .-.  +...       .......-+.|+......|++..+..-
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal--~~la-------~nKKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKAL--FHLA-------YNKKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHH--HHHH-------HHhhhccCCCceEEEeccchhccCcHH
Confidence             4443    356678888888888762 21110000 000  0000       011134456688888887776543211


Q ss_pred             ---CCCCCCCCCCEEEcCCCCCcc------CCcccCCCCCcceeeccCccccc--------cCCCCCCCccEEEEccC
Q 012027          161 ---SDIGNLHSLKTLYLSKNNFVT------LPASINCLFNLEKLKLEDCKRLQ--------SLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       161 ---~~l~~l~~L~~L~Ls~n~~~~------lp~~i~~l~~L~~L~l~~c~~L~--------~lp~lp~~L~~L~~~~c  221 (472)
                         ..+..-.+|+.+.+..|.+..      +-..+.++.+|+.|++..|..-.        .++..+ .|+.|.+.+|
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDC  252 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDC  252 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccch
Confidence               123334678888888887751      11245677888888888875432        223333 4788888887

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.40  E-value=0.0056  Score=54.82  Aligned_cols=102  Identities=22%  Similarity=0.337  Sum_probs=79.4

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCchhhh--hhhCCCCCCCEEe
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFENLL--ETVGQVESLEELD   79 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~   79 (472)
                      +...++|++|.+..++. +..++.|..|.|.+|. +..+...+. .+++|++|.|.+|+.. .+-  +-+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            45678999999988876 8889999999999976 666655454 4567999999997643 332  3356788999999


Q ss_pred             eeCccCCCCC----ccccCCCCCcEEEecCCC
Q 012027           80 ISGTAIRCPP----SSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        80 L~~~~i~~lp----~~i~~l~~L~~L~L~~~~  107 (472)
                      +-+|.+..-.    -.+..+++|+.||..+-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9999988553    347789999999998765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.30  E-value=0.00051  Score=71.42  Aligned_cols=107  Identities=25%  Similarity=0.368  Sum_probs=45.3

Q ss_pred             CCccEEEeeCC-CCee--ccccccCCcCCcEEEeecC-cCCCccC----cccCCCCCCCEEEccCCCCchh--hhhhhCC
Q 012027            2 ECLRELLLDKT-DIKE--MPLSIELLSGLVQLTLKGC-KNLVRLP----SNINSLKSLKTLNLLGCFKFEN--LLETVGQ   71 (472)
Q Consensus         2 ~~L~~L~L~~~-~l~~--lp~si~~L~~L~~L~L~~c-~~l~~lp----~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~   71 (472)
                      ++|+.|.+.++ .+..  +-.....+++|+.|++++| ......+    .....+.+|+.|++++|..+..  +......
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            34444444443 2332  2233445555555555552 2111111    1122345555555555553221  1111122


Q ss_pred             CCCCCEEeeeCcc-CC--CCCccccCCCCCcEEEecCCCC
Q 012027           72 VESLEELDISGTA-IR--CPPSSIFLMKNLKTLSFRGCNG  108 (472)
Q Consensus        72 l~~L~~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~~~~  108 (472)
                      +++|++|.+.++. ++  .+-.....+++|+.|++++|..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            5555665554443 32  2222333455566666665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.00  E-value=0.0039  Score=57.94  Aligned_cols=64  Identities=33%  Similarity=0.405  Sum_probs=41.3

Q ss_pred             CCCCCCcCEEeccCC--CCCCCCCCCCCCCCCCCCEEEcCCCCCcc---CCcccCCCCCcceeeccCcccc
Q 012027          138 LSGLGSLTKLDLSDC--GLGEGAIPSDIGNLHSLKTLYLSKNNFVT---LPASINCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       138 l~~l~~L~~L~L~~~--~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~---lp~~i~~l~~L~~L~l~~c~~L  203 (472)
                      +..+++|+.|.++.|  .++ +.++.-...+++|++|+|++|.+..   ++ .+..+.+|..|++.+|.-.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCcc
Confidence            455667888888877  444 3344445556888888888887763   22 3455666667777776533

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.99  E-value=0.0034  Score=35.21  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=13.0

Q ss_pred             CccEEEeeCCCCeeccccccC
Q 012027            3 CLRELLLDKTDIKEMPLSIEL   23 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~   23 (472)
                      +|++|+|++|+|+++|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466666666666666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.80  E-value=0.0014  Score=61.12  Aligned_cols=182  Identities=17%  Similarity=0.142  Sum_probs=113.1

Q ss_pred             CCCccEEEeeCCCCe-----eccccccCCcCCcEEEeecCcCCC----ccC-------cccCCCCCCCEEEccCCCCchh
Q 012027            1 MECLRELLLDKTDIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLP-------SNINSLKSLKTLNLLGCFKFEN   64 (472)
Q Consensus         1 l~~L~~L~L~~~~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp-------~~i~~L~~L~~L~Ls~c~~l~~   64 (472)
                      |..+.+++|+||.|.     .+..-|.+-.+|+..++++-- +.    .+|       ..+-+++.|++.+||+|-.-..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            456788999999876     345557778888888887631 21    222       2355788999999999876655


Q ss_pred             hhh----hhCCCCCCCEEeeeCccCCCCC--------------ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcc
Q 012027           65 LLE----TVGQVESLEELDISGTAIRCPP--------------SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRR  126 (472)
Q Consensus        65 lp~----~l~~l~~L~~L~L~~~~i~~lp--------------~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~  126 (472)
                      +|+    .|..-+.|.+|.|.+|.+..+.              .-+..-+.|+.+....|+....        +..+.  
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng--------s~~~~--  177 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG--------SKELS--  177 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC--------cHHHH--
Confidence            554    4556788999999999877432              1122345666666655542110        00000  


Q ss_pred             cCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC----CCCCCCCCCCEEEcCCCCCccCC-----cccCCCCCcceeec
Q 012027          127 SSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP----SDIGNLHSLKTLYLSKNNFVTLP-----ASINCLFNLEKLKL  197 (472)
Q Consensus       127 ~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp----~~l~~l~~L~~L~Ls~n~~~~lp-----~~i~~l~~L~~L~l  197 (472)
                              ...+..-..|+.+.+..|.+....+-    ..+..+.+|+.|||..|-|+..-     ..+..-+.|+.|.+
T Consensus       178 --------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         178 --------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             --------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence                    00011124688888888877422111    12456789999999999887322     22334456888888


Q ss_pred             cCcc
Q 012027          198 EDCK  201 (472)
Q Consensus       198 ~~c~  201 (472)
                      ..|-
T Consensus       250 nDCl  253 (388)
T COG5238         250 NDCL  253 (388)
T ss_pred             cchh
Confidence            8884

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.0044  Score=34.77  Aligned_cols=21  Identities=38%  Similarity=0.562  Sum_probs=14.4

Q ss_pred             CCCEEEcCCCCCccCCcccCC
Q 012027          168 SLKTLYLSKNNFVTLPASINC  188 (472)
Q Consensus       168 ~L~~L~Ls~n~~~~lp~~i~~  188 (472)
                      +|++|+|++|+++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.65  E-value=0.0061  Score=56.66  Aligned_cols=84  Identities=25%  Similarity=0.292  Sum_probs=59.6

Q ss_pred             cCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCC--CCchhhhhhhCCCCCCCEEeeeCccCCCCCcc---ccCCC
Q 012027           22 ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGC--FKFENLLETVGQVESLEELDISGTAIRCPPSS---IFLMK   96 (472)
Q Consensus        22 ~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c--~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~---i~~l~   96 (472)
                      ..+.+|+.|.+.++. +.++-. +-.|++|++|.++.|  .....++-....+++|++|++++|.|+. +++   +..+.
T Consensus        40 d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence            345666777776654 333322 346889999999998  5555566666677999999999999885 222   45677


Q ss_pred             CCcEEEecCCCC
Q 012027           97 NLKTLSFRGCNG  108 (472)
Q Consensus        97 ~L~~L~L~~~~~  108 (472)
                      +|..|++.+|..
T Consensus       117 nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  117 NLKSLDLFNCSV  128 (260)
T ss_pred             chhhhhcccCCc
Confidence            888899988873

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.0059  Score=57.80  Aligned_cols=175  Identities=22%  Similarity=0.173  Sum_probs=103.5

Q ss_pred             CccEEEeeCCCCe---eccccccCCcCCcEEEeecCcC---CCccCcccCCCCCCCEEEccCCCCc-hhhhhhhCCCCCC
Q 012027            3 CLRELLLDKTDIK---EMPLSIELLSGLVQLTLKGCKN---LVRLPSNINSLKSLKTLNLLGCFKF-ENLLETVGQVESL   75 (472)
Q Consensus         3 ~L~~L~L~~~~l~---~lp~si~~L~~L~~L~L~~c~~---l~~lp~~i~~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L   75 (472)
                      .+++|+|.+|.|+   ++-..+.+|+.|++|||+.|..   +..+|   -.+++|++|.|.|...- ...-..+..++.+
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            5688999999887   5556678999999999998752   23444   25779999999885432 2244556778888


Q ss_pred             CEEeeeCccCCCCC---ccccCC-CCCcEEEecCCCCCCCC----CCCCCCcchhhhcccCCCCcCC-CCCCCCCCCcCE
Q 012027           76 EELDISGTAIRCPP---SSIFLM-KNLKTLSFRGCNGPPSS----ASCYLPFPINLMRRSSDLGALM-LPSLSGLGSLTK  146 (472)
Q Consensus        76 ~~L~L~~~~i~~lp---~~i~~l-~~L~~L~L~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-l~~l~~l~~L~~  146 (472)
                      ++|+++.|....+-   .-+... +-+++|.+.+|......    ....++....+.....-+.... ......++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            99999988655331   111111 23444555444311000    0001121111111111111111 111344566678


Q ss_pred             EeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 012027          147 LDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV  180 (472)
Q Consensus       147 L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~  180 (472)
                      |+|+.+++-+..--+.+..+++|..|.++.+.+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            8888888855444567888999999999988765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.35  E-value=0.00056  Score=71.13  Aligned_cols=131  Identities=33%  Similarity=0.371  Sum_probs=75.7

Q ss_pred             CCCCCEEEccCCCCchh--hhhhhCCCCCCCEEeeeCc-c-CCC----CCccccCCCCCcEEEecCCCCCCCCCCCCCCc
Q 012027           48 LKSLKTLNLLGCFKFEN--LLETVGQVESLEELDISGT-A-IRC----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPF  119 (472)
Q Consensus        48 L~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~-~-i~~----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~  119 (472)
                      .+.|+.|.+.+|..+..  +-.....+++|+.|+++++ . +..    .......+.+|+.|+++.|......       
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-------  259 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-------  259 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-------
Confidence            67777777777776665  4455667777888887763 1 111    1223445577788888777632210       


Q ss_pred             chhhhcccCCCCcCCCCCC-CCCCCcCEEeccCCC-CCCCCCCCCCCCCCCCCEEEcCCCCCc---cCCcccCCCCCcce
Q 012027          120 PINLMRRSSDLGALMLPSL-SGLGSLTKLDLSDCG-LGEGAIPSDIGNLHSLKTLYLSKNNFV---TLPASINCLFNLEK  194 (472)
Q Consensus       120 ~~~l~~~~~~~~~~~l~~l-~~l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~~~---~lp~~i~~l~~L~~  194 (472)
                                    .+..+ ..+++|+.|.+..|. +++..+-.....+++|++|+|+++...   .+......+++|+.
T Consensus       260 --------------~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~  325 (482)
T KOG1947|consen  260 --------------GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRE  325 (482)
T ss_pred             --------------hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhh
Confidence                          11111 226678888877775 554444444566777888888877543   23333444555555


Q ss_pred             eeccC
Q 012027          195 LKLED  199 (472)
Q Consensus       195 L~l~~  199 (472)
                      |.+..
T Consensus       326 l~~~~  330 (482)
T KOG1947|consen  326 LKLLS  330 (482)
T ss_pred             hhhhh
Confidence            44433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.08  E-value=0.0035  Score=58.76  Aligned_cols=79  Identities=22%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh--hhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL--ETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L~L   80 (472)
                      +.++|+..||.|..|.- ...++.|++|.|+=|+ +.++.+ +..+++|++|.|..|. +..+.  ..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHH-HHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence            45566666666665532 4556666777766654 444443 4556666666666543 23332  23556666666666


Q ss_pred             eCccC
Q 012027           81 SGTAI   85 (472)
Q Consensus        81 ~~~~i   85 (472)
                      ..|..
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            65543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.07  E-value=0.034  Score=28.97  Aligned_cols=16  Identities=50%  Similarity=0.781  Sum_probs=6.6

Q ss_pred             CCCEEEcCCCCCccCC
Q 012027          168 SLKTLYLSKNNFVTLP  183 (472)
Q Consensus       168 ~L~~L~Ls~n~~~~lp  183 (472)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.89  E-value=0.0053  Score=57.56  Aligned_cols=77  Identities=23%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc--ccCCCCCCCEEEccCCCCchhhhh-----hhCCCC
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS--NINSLKSLKTLNLLGCFKFENLLE-----TVGQVE   73 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~Ls~c~~l~~lp~-----~l~~l~   73 (472)
                      |+.|++|.|+-|.|+.+-+ +..+++|+.|.|..|. +..+..  .+.+|++|++|-|..|...+.-+.     .+.-++
T Consensus        40 Mp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             cccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            7899999999999999876 9999999999999865 555543  367899999999988765544322     244456


Q ss_pred             CCCEEe
Q 012027           74 SLEELD   79 (472)
Q Consensus        74 ~L~~L~   79 (472)
                      +|+.||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            666664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.29  E-value=0.051  Score=28.29  Aligned_cols=16  Identities=31%  Similarity=0.538  Sum_probs=6.7

Q ss_pred             CccEEEeeCCCCeecc
Q 012027            3 CLRELLLDKTDIKEMP   18 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp   18 (472)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.88  E-value=0.91  Score=37.64  Aligned_cols=56  Identities=11%  Similarity=0.272  Sum_probs=20.1

Q ss_pred             cCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEe
Q 012027           45 INSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSF  103 (472)
Q Consensus        45 i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L  103 (472)
                      +.+.++|+.+.+..  .+..++ ..+.++++|+.+.+..+ +..++.. +.++++|+.+.+
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence            44455566666553  233333 23444555555555543 3333321 233334444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.85  E-value=0.26  Score=28.59  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=16.3

Q ss_pred             CCCCCEEEcCCCCCccCCccc
Q 012027          166 LHSLKTLYLSKNNFVTLPASI  186 (472)
Q Consensus       166 l~~L~~L~Ls~n~~~~lp~~i  186 (472)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.85  E-value=0.26  Score=28.59  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=16.3

Q ss_pred             CCCCCEEEcCCCCCccCCccc
Q 012027          166 LHSLKTLYLSKNNFVTLPASI  186 (472)
Q Consensus       166 l~~L~~L~Ls~n~~~~lp~~i  186 (472)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.78  E-value=0.99  Score=37.39  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=40.8

Q ss_pred             CccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEe
Q 012027            3 CLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELD   79 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~   79 (472)
                      +|+.+.+.. .++.++.. +..+++|+.+.+.+.  +..++. .+..+++|+.+.+.+  .+..++ ..+..+++|+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence            556666653 45555443 566666777776552  555543 344555667777654  233333 2344466677776


Q ss_pred             eeCccCCCCCc-cccCCCCCcEEEecC
Q 012027           80 ISGTAIRCPPS-SIFLMKNLKTLSFRG  105 (472)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~  105 (472)
                      +..+ +..++. .+.+. .|+.+.+..
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC
Confidence            6553 443332 23333 666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.88  E-value=0.27  Score=28.51  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=14.5

Q ss_pred             CCCccEEEeeCCCCeecccc
Q 012027            1 MECLRELLLDKTDIKEMPLS   20 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s   20 (472)
                      |++|+.|+|.+|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46777777777777777754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.88  E-value=0.27  Score=28.51  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=14.5

Q ss_pred             CCCccEEEeeCCCCeecccc
Q 012027            1 MECLRELLLDKTDIKEMPLS   20 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s   20 (472)
                      |++|+.|+|.+|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46777777777777777754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.60  E-value=0.027  Score=51.64  Aligned_cols=92  Identities=20%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             Ceeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccc
Q 012027           14 IKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSI   92 (472)
Q Consensus        14 l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i   92 (472)
                      ++++|- .|......+.||++.+. +..+-..++.++.|..|+++.+ .+..+|+..++...++.+++..|....+|.+.
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence            345552 26778889999999866 6677777778889999999974 46778999999999999999999999999999


Q ss_pred             cCCCCCcEEEecCCC
Q 012027           93 FLMKNLKTLSFRGCN  107 (472)
Q Consensus        93 ~~l~~L~~L~L~~~~  107 (472)
                      +.++.++++++-++.
T Consensus       108 ~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTE  122 (326)
T ss_pred             cccCCcchhhhccCc
Confidence            999999999988765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.29  E-value=0.35  Score=43.59  Aligned_cols=60  Identities=35%  Similarity=0.596  Sum_probs=25.6

Q ss_pred             CCCCCCCEEEccCCCCchhh-hhhhC-CCCCCCEEeeeCc-cCCCC-CccccCCCCCcEEEecC
Q 012027           46 NSLKSLKTLNLLGCFKFENL-LETVG-QVESLEELDISGT-AIRCP-PSSIFLMKNLKTLSFRG  105 (472)
Q Consensus        46 ~~L~~L~~L~Ls~c~~l~~l-p~~l~-~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L~~L~L~~  105 (472)
                      .++++++.|.+.+|..+... -+.++ -.++|+.|++++| .|++- -..+.++++|+.|.+.+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            34444555555555444321 01111 1245555555544 33321 22344555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	472
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 83/217 (38%), Gaps = 50/217 (23%)
Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPXXXXXXXXXXXXXXXGCFKFE 63
           L  L L +  ++ +P SI  L+ L +L+++ C  L  LP                     
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG----------- 177
Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSS---ASCYLPFP 120
              E  G V +L+ L +  T IR  P+SI  ++NLK+L  R  N P S+   A  +LP  
Sbjct: 178 ---EHQGLV-NLQSLRLEWTGIRSLPASIANLQNLKSLKIR--NSPLSALGPAIHHLPKL 231
Query: 121 INLMRRSSDXXXXXXXXXXXXXXXXXXXXXDCGLGEGAIPSDIGNLHSLKTLYLSK-NNF 179
             L  R                                 P   G    LK L L   +N 
Sbjct: 232 EELDLRGCTALRN-------------------------YPPIFGGRAPLKRLILKDCSNL 266
Query: 180 VTLPASINCLFNLEKLKLEDCKRLQSLP----QLPPN 212
           +TLP  I+ L  LEKL L  C  L  LP    QLP N
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (362), Expect = 5e-39
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 35/222 (15%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           +  L+ + +D   + E+P +++  +GL  LTL     L  LP++I SL  L+ L++  C 
Sbjct: 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACP 161

Query: 61  KFENLLETVGQVE---------SLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPS 111
           +   L E +   +         +L+ L +  T IR  P+SI  ++NLK+L  R       
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP---- 217

Query: 112 SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT 171
                             L AL  P++  L  L +LDL  C       P   G    LK 
Sbjct: 218 ------------------LSAL-GPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKR 257

Query: 172 LYLS-KNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPN 212
           L L   +N +TLP  I+ L  LEKL L  C  L  LP L   
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (340), Expect = 6e-36
 Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 26/231 (11%)

Query: 4   LRELLLDKTDIKEMPLSIELLS--GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
            +        +K     +E  +  G V L L+    L + P     L  L+ + +     
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-G 115

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
              L +T+ Q   LE L ++   +R  P+SI  +  L+ LS R C               
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP-------------- 161

Query: 122 NLMRRSSDLGALMLP-SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
            L      L +        GL +L  L L   G+    +P+ I NL +LK+L +  +   
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLS 219

Query: 181 TLPASINCLFNLEKLKLEDCKRLQSLP----QLPPNVEKVRVNGCASLVTL 227
            L  +I+ L  LE+L L  C  L++ P         ++++ +  C++L+TL
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 2e-25
 Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 43/239 (17%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKS--LKTLNLLGCFK 61
            +       +           +   Q+  +  + L      +          L L     
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNP-QIETRTGRALKATADLLEDATQPGRVALELRSV-P 92

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
                +   ++  L+ + I    +   P ++     L+TL+                   
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN--------------- 137

Query: 122 NLMRRSSDLGALMLP-SLSGLGSLTKLDLSDC--------GLGEGAIPSDIGNLHSLKTL 172
            L           LP S++ L  L +L +  C         L       +   L +L++L
Sbjct: 138 PLRA---------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 173 YLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP----QLPPNVEKVRVNGCASLVTL 227
            L      +LPASI  L NL+ LK+ +   L +L      L P +E++ + GC +L   
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHL-PKLEELDLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 2e-24
 Identities = 34/186 (18%), Positives = 54/186 (29%), Gaps = 31/186 (16%)

Query: 24  LSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83
            SG   L  +G   L      ++  +     +                  + +    +G 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ----ANSNNPQIETRTGR 66

Query: 84  AIRCPPSSIFL--MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL 141
           A++     +          L  R    P        P                      L
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP------QFP-----------------DQAFRL 103

Query: 142 GSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK 201
             L  + +   GL E  +P  +     L+TL L++N    LPASI  L  L +L +  C 
Sbjct: 104 SHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161

Query: 202 RLQSLP 207
            L  LP
Sbjct: 162 ELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           ++ L+ L +  + +  +  +I  L  L +L L+GC  L   P        LK L L  C 
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 61  KFENLLETVGQVESLEELDISG-TAIRCPPSSIFLMKNLKTLSFRGC 106
               L   + ++  LE+LD+ G   +   PS I  +     +     
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 1   MECLREL-LLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGC 59
              L+ L L D +++  +PL I  L+ L +L L+GC NL RLPS I  L +   + +   
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 60  FKFENLLE 67
            +   L +
Sbjct: 312 LQ-AQLDQ 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 16/205 (7%), Positives = 54/205 (26%), Gaps = 21/205 (10%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
             ++     +I  +  ++  L+ L Q  +     +          ++ +           
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK----- 239

Query: 64  NLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
                   ++ L ++++         P+ +  +  ++ ++     G             +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI------SGEQLKD 293

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
             +         L        +  + +    L    + + +  +  L  L    N     
Sbjct: 294 DWQA--------LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 183 PASINCLFNLEKLKLEDCKRLQSLP 207
             +      L  L L    ++  +P
Sbjct: 346 LPAFGSEIKLASLNLAYN-QITEIP 369

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 5e-18
 Identities = 19/213 (8%), Positives = 59/213 (27%), Gaps = 19/213 (8%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLL------ 57
           L  L L     K +   +    G+        K  +R+      +      +        
Sbjct: 107 LEVLALGSHGEK-VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 58  --GCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC 115
                + +++ ++        ++      I     ++  +  L+            +   
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN--- 222

Query: 116 YLPFPINLMRRSSDLGALML--PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
                      S               L  LT +++ +C      +P+ +  L  ++ + 
Sbjct: 223 --ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLIN 279

Query: 174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSL 206
           ++ N  ++     +    L    +   +++Q +
Sbjct: 280 VACNRGISGEQLKDDWQALADAPV--GEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 9e-18
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 31/215 (14%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSN--INSLKSLKTLNL---- 56
           L  L L    I E+P +       +  L+    K L  +P+     S+  +  ++     
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 57  ---LGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIF-LMKNLKTLSFRGCNGPPSS 112
              +    F+ L  T  +  ++  +++S   I   P  +F     L +++  G       
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN------ 467

Query: 113 ASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI--GNLHSLK 170
                     L     +       +      LT +DL    L +  +  D     L  L 
Sbjct: 468 ---------MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLV 516

Query: 171 TLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQS 205
            + LS N+F   P        L+   + + +  Q 
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 44/221 (19%)

Query: 18  PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNL--------LGCFKFENLLETV 69
            L  + L  L  + +  C NL +LP+ + +L  ++ +N+                 L   
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 70  GQVESLEELDISGTAIRC--PPSSIFLMKNLKTLSFRGCN---GPPSSASCYLPFPINLM 124
              E ++ + I    ++     +S+  MK L  L           P+  S      I L 
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE-----IKLA 356

Query: 125 RRSSDLGALML---------PSLSG-LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYL 174
                   L L          +  G    +  L  +   L       D  ++  +  +  
Sbjct: 357 S-------LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 175 SKNN--------FVTLPASINCLFNLEKLKLEDCKRLQSLP 207
           S N         F  L  +     N+  + L + + +   P
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFP 449

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 36/224 (16%)

Query: 9   LDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNL-------LGCF 60
           +D  +   +  +      +  + L     + + P  + ++   L ++NL       +   
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFL--MKNLKTLSFRGCN--GPPSSASCY 116
             ++  E       L  +D+    +           +  L  +     +    P+     
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-- 533

Query: 117 LPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSK 176
                               +L G G   + D           P  I    SL  L +  
Sbjct: 534 -----------------NSSTLKGFGIRNQRDAQGNRT-LREWPEGITLCPSLTQLQIGS 575

Query: 177 NNFVTLPASINCLFNLEKLKLEDCKRLQ-SLPQLPPNVEKVRVN 219
           N+   +   I    N+  L ++D   +   L  + P +E     
Sbjct: 576 NDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 27/209 (12%), Positives = 53/209 (25%), Gaps = 45/209 (21%)

Query: 24  LSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNL----LGCFKFENLLETVGQVESLEELD 79
              +  L+L+G     R+P  I  L  L+ L L        +     + +    S E+  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 80  ISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLS 139
                     + +                                  S      +  S  
Sbjct: 140 KMRMHY--QKTFVDYDPREDFSDLI-----------------KDCINSDPQQKSIKKSSR 180

Query: 140 GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV------------------- 180
                T++      +    +   +  L  L+  Y+  + FV                   
Sbjct: 181 ITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 181 -TLPASINCLFNLEKLKLEDCKRLQSLPQ 208
            T     + L +L  +++ +C  L  LP 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 13/142 (9%), Positives = 37/142 (26%), Gaps = 8/142 (5%)

Query: 68  TVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN---GPPSSASCYLPFPINL 123
           ++     +  L + G       P +I  +  L+ L+                 +   ++ 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGL----GEGAIPSDIGNLHSLKTLYLSKNNF 179
            ++           +         DL    +     + +I            +    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 180 VTLPASINCLFNLEKLKLEDCK 201
             +  ++  L  L +  + +  
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 27/199 (13%), Positives = 54/199 (27%), Gaps = 35/199 (17%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCK-------NLVRLPSNINSLKSLKTLN 55
           +  + L    I + P  +    S L  + L G         +L     N  +   L +++
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 56  LLGCFKFENLLETV------GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGP 109
           L       N L  +        +  L  +D+S  +    P+       LK    R     
Sbjct: 495 L-----RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN-QRD 548

Query: 110 PSSASCYLPFPINLMRRSSDLGALMLPSLSG----------LGSLTKLDLSDCGLGEGAI 159
                    +P  +    +   +L    +              +++ LD+ D        
Sbjct: 549 AQGNRTLREWPEGI----TLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN-ISID 603

Query: 160 PSDIGNLHSLKTLYLSKNN 178
            S +          L  + 
Sbjct: 604 LSYVCPYIEAGMYMLFYDK 622

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.9 bits (215), Expect = 3e-18
 Identities = 21/205 (10%), Positives = 59/205 (28%), Gaps = 25/205 (12%)

Query: 6   ELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL 65
           ++      I  +  +I+ L+ L  +              ++   +           +EN 
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQ----YENE 483

Query: 66  LETVGQVESLEELDISGTA-IRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLPFPIN 122
             +   ++ L ++++     +   P  ++ +  L++L+             + +      
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-- 541

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
                                +    +    L E    + +  +  L  L    N    L
Sbjct: 542 -------------DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

Query: 183 PASINCLFNLEKLKLEDCKRLQSLP 207
             +      L  LKL+   +++ +P
Sbjct: 589 E-AFGTNVKLTDLKLDYN-QIEEIP 611

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.5 bits (214), Expect = 4e-18
 Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 32/226 (14%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L+ L                   L     +  K+ +R+      L   + LNL      +
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEE-LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL--Q 405

Query: 64  NLLETVGQVESLE----------ELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPS 111
           + +    +++ ++          ++      I     +I  +  L+ + F          
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 112 SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT 171
           +         +     +        S S L  LT ++L +C      +P  + +L  L++
Sbjct: 466 AVDW-----EDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQS 519

Query: 172 LYLSKNNFVT----------LPASINCLFNLEKLKLEDCKRLQSLP 207
           L ++ N  ++          L    +    ++   +     L+  P
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFP 564

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 42/236 (17%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNL---- 56
           ++            +   LS   L  L  + L  C N+ +LP  +  L  L++LN+    
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 57  -----LGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFL--MKNLKTLSFRGCN-- 107
                     +  L +       ++   +    +   P+S  L  M  L  L        
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 108 GPPSSASCYLPFPINLMRRSSDLGALML--------PS--LSGLGSLTKLDLSDCGLGEG 157
              +  +      + L         L L        P    +    +  L  S   L   
Sbjct: 587 HLEAFGTN-----VKLTD-------LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINC------LFNLEKLKLEDCKRLQSLP 207
               +  +++ + ++  S N   +   +I+C        N   + L   + +Q  P
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFP 689

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 7e-14
 Identities = 33/209 (15%), Positives = 65/209 (31%), Gaps = 37/209 (17%)

Query: 20  SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD 79
            ++    +  L+L G     R+P  I  L  LK L+        +     G++   EEL 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGT-----HSETVSGRLFGDEEL- 371

Query: 80  ISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLS 139
                    P      K+   + ++                 + + R+ ++  +     S
Sbjct: 372 --------TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI--KKDS 421

Query: 140 GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL----------------- 182
            + SL    + +       I   I  L  L+ +Y + + F                    
Sbjct: 422 RI-SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 183 ---PASINCLFNLEKLKLEDCKRLQSLPQ 208
                S + L +L  ++L +C  +  LP 
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 40/261 (15%), Positives = 76/261 (29%), Gaps = 53/261 (20%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPS--NINSLKSLKTLNLLGCF 60
           L +L LD   I+E+P         +  L     K L  +P+  N  S+  + +++     
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN- 654

Query: 61  KFENLLETVG------QVESLEELDISGTAIRCPPSSIF-LMKNLKTLSFRGCN--GPPS 111
           K  +    +       +  +   + +S   I+  P+ +F     + T+          P 
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 112 SASCYLPFPINLMRR--------------SSDLGALMLPSLSGL---------------- 141
           ++                           S D  A  LP LS +                
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774

Query: 142 -GSLTKLDLSDCGLGE-----GAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKL 195
              L    +      E        P+ I    SL  L +  N+   +   +     L  L
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYIL 832

Query: 196 KLEDCKRLQ-SLPQLPPNVEK 215
            + D   +   +  + P +E 
Sbjct: 833 DIADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 27/196 (13%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCK-------NLVRLPSNINSLKSLKTLN 55
              + L   +I++ P  +    S +  + L           +L     N  +   L T++
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 56  LLGCFKFENLLETV------GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGP 109
           L       N L ++        +  L  +D+S       P+       LK    R     
Sbjct: 735 L-----RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH-QRD 788

Query: 110 PSSASCYLPFPINLMRRSS----DLGALMLPSL--SGLGSLTKLDLSDCGLGEGAIPSDI 163
                    +P  +    S     +G+  +  +       L  LD++D       + S  
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVC 848

Query: 164 GNLHS-LKTLYLSKNN 178
             + + +  L   K  
Sbjct: 849 PYIEAGMYVLLYDKTQ 864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 5e-18
 Identities = 51/232 (21%), Positives = 76/232 (32%), Gaps = 53/232 (22%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           +  L++   ++  +P    L   L  L + G + L  LP     L  L   +        
Sbjct: 63  ITTLVIPDNNLTSLP---ALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPL----- 113

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
             L  +     L +L I G  +   P        L+ LS                     
Sbjct: 114 THLPAL--PSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQ---------------- 152

Query: 124 MRRSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
                      L SL +    L KL   +  L    +P        L+ L +S N   +L
Sbjct: 153 -----------LASLPALPSELCKLWAYNNQLTS--LPMLPSG---LQELSVSDNQLASL 196

Query: 183 PASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRV--NGCASLVTLLGALK 232
           P   +    L KL   +  RL SLP LP  ++++ V  N   SL  L   LK
Sbjct: 197 PTLPS---ELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 9e-17
 Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 30/207 (14%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L +L +    +  +P    L  GL +L++   + L  LP+  + L  L   N        
Sbjct: 123 LCKLWIFGNQLTSLP---VLPPGLQELSVSDNQ-LASLPALPSELCKLWAYN-------- 170

Query: 64  NLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
           N L ++      L+EL +S   +   P+    +  L   + R  + P          P  
Sbjct: 171 NQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL--------PSG 222

Query: 123 LMRRSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT 181
           L  +   +    L SL      L +L +S   L    +P     L    +L + +N    
Sbjct: 223 L--KELIVSGNRLTSLPVLPSELKELMVSGNRLTS--LPMLPSGL---LSLSVYRNQLTR 275

Query: 182 LPASINCLFNLEKLKLEDCKRLQSLPQ 208
           LP S+  L +   + LE    L     
Sbjct: 276 LPESLIHLSSETTVNLEGN-PLSERTL 301

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 7e-14
 Identities = 43/245 (17%), Positives = 71/245 (28%), Gaps = 46/245 (18%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L +L      +  +P    L SGL +L++   + L  LP+  + L  L   N        
Sbjct: 163 LCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYN-------- 210

Query: 64  NLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
           N L ++      L+EL +SG  +   P        LK L   G                N
Sbjct: 211 NRLTSLPALPSGLKELIVSGNRLTSLPVLP---SELKELMVSG----------------N 251

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
            +          LP L     L  L +    L    +P  + +L S  T+ L  N     
Sbjct: 252 RLTS--------LPML--PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSER 299

Query: 183 PASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIID 242
                    +          ++          + R    A+   L+ A +   +      
Sbjct: 300 TLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 243 FVDSL 247
                
Sbjct: 358 MFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 129 DLGALMLPSL--SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI 186
           ++G   L +L       +T L + D  L    +P+    L   +TL +S N   +LP   
Sbjct: 46  NVGESGLTTLPDCLPAHITTLVIPDNNLTS--LPALPPEL---RTLEVSGNQLTSLPVLP 100

Query: 187 NCLFNLEKLKLEDCKRLQSLPQLPPNVEK--VRVNGCASLVTLLGALK 232
             L  L          L  LP LP  + K  +  N   SL  L   L+
Sbjct: 101 PGLLELSIFSN----PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 55/179 (30%)

Query: 74  SLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGAL 133
               L++  + +   P  +    ++ TL     N                          
Sbjct: 41  GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-------------------------- 72

Query: 134 MLPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLH-----------------SLKTLYLS 175
            L SL +    L  L++S   L    +P     L                   L  L++ 
Sbjct: 73  -LTSLPALPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIF 129

Query: 176 KNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC--ASLVTLLGALK 232
            N   +LP        L++L + D  +L SLP LP  + K+        SL  L   L+
Sbjct: 130 GNQLTSLPVLPP---GLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L+E L   +++ EMP+  E +    +      +     P      + +    L  C   +
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72

Query: 64  --------NLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSAS 114
                     L ++      LE L  S  ++   P     +K+L   +            
Sbjct: 73  AHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS----- 127

Query: 115 CYLPFPINLMR-RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
                P  L     S+     LP L     L  +D+ +  L +  +P    +   L+ + 
Sbjct: 128 ---DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LPDLPPS---LEFIA 179

Query: 174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEK 215
              N    LP  +  L  L  +  ++   L+ LP LP ++E 
Sbjct: 180 AGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLES 219

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.6 bits (202), Expect = 8e-17
 Identities = 69/266 (25%), Positives = 93/266 (34%), Gaps = 38/266 (14%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
             EL L+   +  +P   EL   L  L    C +L  LP    SLKSL   N        
Sbjct: 73  AHELELNNLGLSSLP---ELPPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLK-ALS 127

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGC------NGPPS----SA 113
           +L         LE L +S   +   P  +     LK +           + PPS    +A
Sbjct: 128 DLPP------LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 180

Query: 114 SC----YLPFPINLMR-RSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLH 167
                  LP   NL    +       L  L     SL  +   +  L E     ++ NL 
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE---LPELQNLP 237

Query: 168 SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRV--NGCASLV 225
            L T+Y   N   TLP       +LE L + D   L  LP+LP ++  + V  N  + L 
Sbjct: 238 FLTTIYADNNLLKTLPDLPP---SLEALNVRDN-YLTDLPELPQSLTFLDVSENIFSGLS 293

Query: 226 TLLGALK-LRKSSCTIIDFVDSLKLL 250
            L   L  L  SS  I    D    L
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPSL 319

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 58/252 (23%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  +  D   +K++P   +L   L  +       L  LP  + +L  L T+         
Sbjct: 197 LTAIYADNNSLKKLP---DLPLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADN----- 246

Query: 64  NLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
           NLL+T+     SLE L++    +   P     +  L                     P N
Sbjct: 247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE--------LPPN 298

Query: 123 LMRRSSDLGALMLPSLSG-LGSLTKLDLSDCGLGEGAIPSDIGNLH-------------- 167
           L     +  +  + SL     SL +L++S+  L E  +P+    L               
Sbjct: 299 L--YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 354

Query: 168 ---SLKTLYLSKNNFVTLPASINCL----------------FNLEKLKLEDCKRLQSLPQ 208
              +LK L++  N     P     +                 NL++L +E    L+  P 
Sbjct: 355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPD 413

Query: 209 LPPNVEKVRVNG 220
           +P +VE +R+N 
Sbjct: 414 IPESVEDLRMNS 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 39/231 (16%), Positives = 70/231 (30%), Gaps = 48/231 (20%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           +  L  +  D   +K +P   +L   L  L ++    L  LP    SL  L     +   
Sbjct: 236 LPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFS- 290

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLP 118
               L        +L  L+ S   IR       L  +L+ L+         P+       
Sbjct: 291 GLSELPP------NLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL------ 335

Query: 119 FPINLMRRSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLH---------- 167
            P  L           L  +     +L +L +    L E   P    ++           
Sbjct: 336 -PPRL--ERLIASFNHLAEVPELPQNLKQLHVEYNPLRE--FPDIPESVEDLRMNSHLAE 390

Query: 168 ------SLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPN 212
                 +LK L++  N     P       ++E L++ + +R+    +    
Sbjct: 391 VPELPQNLKQLHVETNPLREFPDIPE---SVEDLRM-NSERVVDPYEFAHE 437

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 18/148 (12%)

Query: 74  SLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGAL 133
            L+E     + +   P     +K+                  +            ++   
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--------WERNAPPGNGEQREMAVS 63

Query: 134 MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLE 193
            L          +L+L++ GL    +P    +   L++L  S N+   LP     L +L 
Sbjct: 64  RLRDCLDR-QAHELELNNLGLSS--LPELPPH---LESLVASCNSLTELPELPQSLKSLL 117

Query: 194 KLKLEDCKRLQSLPQLPPNVEKVRVNGC 221
                    L++L  LPP +E + V+  
Sbjct: 118 VDNN----NLKALSDLPPLLEYLGVSNN 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 32/200 (16%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
            + L  L + +     +    EL   L  L     + +  L    +   SL+ LN+    
Sbjct: 276 PQSLTFLDVSENIFSGLS---ELPPNLYYLNASSNE-IRSLC---DLPPSLEELNV---- 324

Query: 61  KFENLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPF 119
              N L  +      LE L  S   +   P      +NLK L                P 
Sbjct: 325 -SNNKLIELPALPPRLERLIASFNHLAEVPELP---QNLKQLHVEYNPLR------EFPD 374

Query: 120 PINLMRR-SSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
               +     +     +P L    +L +L +    L E   P    ++   + L ++   
Sbjct: 375 IPESVEDLRMNSHLAEVPEL--PQNLKQLHVETNPLRE--FPDIPESV---EDLRMNSER 427

Query: 179 FVTLPASINCLFNLEKLKLE 198
            V      +     +KL+ +
Sbjct: 428 VVDPYEFAHET--TDKLEDD 445

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 1e-16
 Identities = 49/214 (22%), Positives = 74/214 (34%), Gaps = 28/214 (13%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS--NINSLKSLKTLNLLGC-F 60
           L  L L  + I       +  + L  L L        + +  ++ S   LK LN+     
Sbjct: 79  LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

Query: 61  KFENLLETVGQVESLEELDISGTAIRCP-PSSIFL---MKNLKTLSFRGCN--GPPSSAS 114
            F   +    ++ SLE LD+S  +I         L      LK L+  G    G      
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD----- 193

Query: 115 CYLPFPINLMR--RSSDLGALML----PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS 168
                 ++        D+ +       P L    +L  LD+S   L  G     I     
Sbjct: 194 ----VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL-SGDFSRAISTCTE 248

Query: 169 LKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCK 201
           LK L +S N FV  +P     L +L+ L L + K
Sbjct: 249 LKLLNISSNQFVGPIPPLP--LKSLQYLSLAENK 280

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 51/199 (25%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 18  PLSIELLSGLVQLTLKGCKNLV-RLPSNI-NSLKSLKTLNLLGCFKFENLLETVGQVESL 75
           P+    L  L  L+L         +P  +  +  +L  L+L G   +  +    G    L
Sbjct: 262 PIPPLPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 76  EELDISGTAIRC--PPSSIFLMKNLKTLSFRGCN--GPPSSASCYLPFPINLMRRSSDLG 131
           E L +S        P  ++  M+ LK L        G           P +L   S+ L 
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE---------LPESLTNLSASLL 371

Query: 132 ALMLPS--LSG----------LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF 179
            L L S   SG            +L +L L + G   G IP  + N   L +L+LS N  
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYL 430

Query: 180 V-TLPASINCLFNLEKLKL 197
             T+P+S+  L  L  LKL
Sbjct: 431 SGTIPSSLGSLSKLRDLKL 449

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 52/216 (24%), Positives = 75/216 (34%), Gaps = 45/216 (20%)

Query: 4   LRELLLDKTDI-KEMPLSIELLSGLVQLTLKGCKNLVRLPSN-------INSLKSLKTLN 55
           L  L L    I     +   L  G  +L        + +  N       ++   +L+ L+
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKH------LAISGNKISGDVDVSRCVNLEFLD 206

Query: 56  LLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN--GPPSS 112
           +     F   +  +G   +L+ LDISG  +      +I     LK L+       GP   
Sbjct: 207 VSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 113 ASCYLPFPINLMRRSSDLGALML----------PSLSG-LGSLTKLDLSDCGLGEGAIPS 161
                            L  L L            LSG   +LT LDLS      GA+P 
Sbjct: 266 LPL------------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPP 312

Query: 162 DIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLK 196
             G+   L++L LS NNF   LP     L  +  LK
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLK 346

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 39/166 (23%)

Query: 41  LPSNINSLKSLKTLNLLGCFKFENLL-----ETVGQVESLEELDISGTAIRCP-PSSIFL 94
           +P  +++   L +L+L       N L      ++G +  L +L +    +    P  +  
Sbjct: 410 IPPTLSNCSELVSLHL-----SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 95  MKNLKTLSFRGCN--GPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDC 152
           +K L+TL     +  G        +P                   LS   +L  + LS+ 
Sbjct: 465 VKTLETLILDFNDLTGE-------IP-----------------SGLSNCTNLNWISLSNN 500

Query: 153 GLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKL 197
            L  G IP  IG L +L  L LS N+F   +PA +    +L  L L
Sbjct: 501 RL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 44/212 (20%)

Query: 24  LSGLVQLTLKGCKNLVRL-----------PSNINSLKSLKTLNLLGCFKFENLLETVGQV 72
           L+G +   L  C NL  +           P  I  L++L  L L       N+   +G  
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 73  ESLEELDI-----SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRS 127
            SL  LD+     +GT I   P+++F        +F          +  +    +     
Sbjct: 538 RSLIWLDLNTNLFNGT-I---PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593

Query: 128 SDLGALMLPSLSGLGSLTKLDLSDCGLG-----------------------EGAIPSDIG 164
            +   +    L+ L +    +++    G                        G IP +IG
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

Query: 165 NLHSLKTLYLSKNNFV-TLPASINCLFNLEKL 195
           ++  L  L L  N+   ++P  +  L  L  L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 8e-09
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 30/154 (19%)

Query: 50  SLKTLNLLGC---FKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGC 106
            + +++L        F  +  ++  +  LE L +S + I    S      +L +L     
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 107 N--GPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP-SDI 163
           +  GP       +                   SL     L  L++S   L +     S  
Sbjct: 111 SLSGP-------VTTL---------------TSLGSCSGLKFLNVSSNTL-DFPGKVSGG 147

Query: 164 GNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLK 196
             L+SL+ L LS N+                +LK
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 36/198 (18%)

Query: 24  LSGLVQLTLKGCKNLVRL-----------PSNINSLKSLKTLNLLGCFKFENLLETVGQV 72
            SG +   L  C++L+ L           P+ +         N +           +   
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI----AGKRYVYIKND 581

Query: 73  ESLEELDISGTAIR---CPPSSIFLMKNLKTLSFRGCN--G--PPSSASCYLPFPINLMR 125
              +E   +G  +         +  +      +       G   P+  +      +++  
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM-- 639

Query: 126 RSSDLGALML-----PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
            S +    ML       +  +  L  L+L    +  G+IP ++G+L  L  L LS N   
Sbjct: 640 -SYN----MLSGYIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 181 -TLPASINCLFNLEKLKL 197
             +P +++ L  L ++ L
Sbjct: 694 GRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 142 GSLTKLDLSDCGL--GEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKL 197
             +T +DLS   L  G  A+ S + +L  L++L+LS ++     +   C  +L  L L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 35/171 (20%), Positives = 51/171 (29%), Gaps = 34/171 (19%)

Query: 16  EMPLSIELLSGLVQLTLKGCKNLV--RLPSNINSLKSLKTLNLLGCFKFENLLETVGQVE 73
           +  + I+      +    G            +N L +    N+       +   T     
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 74  SLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN---GP-PSSASCYLPFPINLMRRSS 128
           S+  LD+S   +    P  I  M  L  L+  G N   G  P                  
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNL-GHNDISGSIPDE---------------- 675

Query: 129 DLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF 179
                    +  L  L  LDLS   L +G IP  +  L  L  + LS NN 
Sbjct: 676 ---------VGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNL 716

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 5e-16
 Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 34/206 (16%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
              L      I ++      L+  ++  L+  K  V        L+S+  L + G  K  
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQ--KASVTDVVTQEELESITKLVVAGE-KVA 57

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           + ++ +  + +LE L+++G  I      +  +  L  L                   I  
Sbjct: 58  S-IQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNK-------------IT- 101

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
                      + +L  L +L +L L++  + +    S + NL  + +L L  N+ ++  
Sbjct: 102 ----------DISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDL 148

Query: 184 ASINCLFNLEKLKLEDCKRLQSLPQL 209
           + ++ +  L  L + + K ++ +  +
Sbjct: 149 SPLSNMTGLNYLTVTESK-VKDVTPI 173

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 33/209 (15%), Positives = 68/209 (32%), Gaps = 40/209 (19%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L L+   I ++   +  L  L  L +    N +   S + +L +L+ L L      E
Sbjct: 68  LEYLNLNGNQITDIS-PLSNLVKLTNLYIGT--NKITDISALQNLTNLRELYL-----NE 119

Query: 64  NLLETV---GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           + +  +     +  +  L++         S +  M  L  L+                  
Sbjct: 120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK------------- 166

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
           +             +  ++ L  L  L L+   + +    S + +L SL       N   
Sbjct: 167 VK-----------DVTPIANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQIT 212

Query: 181 TLPASINCLFNLEKLKLEDCKRLQSLPQL 209
            +   +  +  L  LK+ +  ++  L  L
Sbjct: 213 DIT-PVANMTRLNSLKIGNN-KITDLSPL 239

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 6e-15
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 32/198 (16%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L L+   I+++   +  L+ L   T     N +   + + ++  L +L +    K  
Sbjct: 179 LYSLSLNYNQIEDIS-PLASLTSLHYFTAY--VNQITDITPVANMTRLNSLKIGNN-KIT 234

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           +L   +  +  L  L+I    I    + +  +  LK L+                  I+ 
Sbjct: 235 DL-SPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQ-------------IS- 278

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
                      +  L+ L  L  L L++  L        IG L +L TL+LS+N+   + 
Sbjct: 279 ----------DISVLNNLSQLNSLFLNNNQL-GNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 184 ASINCLFNLEKLKLEDCK 201
             +  L  ++     +  
Sbjct: 328 P-LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 36/211 (17%), Positives = 78/211 (36%), Gaps = 38/211 (18%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           LREL L++ +I ++   +  L+ +  L L    + +   S ++++  L  L +    K +
Sbjct: 112 LRELYLNEDNISDIS-PLANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTES-KVK 168

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           ++   +  +  L  L ++   I    S +  + +L   +                  I  
Sbjct: 169 DV-TPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQ-------------IT- 212

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
                      +  ++ +  L  L + +  + +    S + NL  L  L +  N    + 
Sbjct: 213 ----------DITPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISDIN 259

Query: 184 ASINCLFNLEKL-----KLEDCKRLQSLPQL 209
           A +  L  L+ L     ++ D   L +L QL
Sbjct: 260 A-VKDLTKLKMLNVGSNQISDISVLNNLSQL 289

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 37/182 (20%)

Query: 34  GCKNLVRLPSNINS------LKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC 87
           G   L  LP+ IN       L       L      +  + T  ++ES+ +L ++G  +  
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS 58

Query: 88  PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKL 147
               I  + NL+ L+  G               I             +  LS L  LT L
Sbjct: 59  IQ-GIEYLTNLEYLNLNGNQ-------------IT-----------DISPLSNLVKLTNL 93

Query: 148 DLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP 207
            +    +      S + NL +L+ LYL+++N   +   +  L  +  L L     L  L 
Sbjct: 94  YIGTNKI---TDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS 149

Query: 208 QL 209
            L
Sbjct: 150 PL 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 48/216 (22%), Positives = 76/216 (35%), Gaps = 30/216 (13%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLG-CFK 61
           L+EL L  T + E+P  +  LS L +L L   K    L     ++  SL  L++ G   +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKR 338

Query: 62  FENLLETVGQVESLEELDISG---TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLP 118
            E     +  +E+L ELD+S        C    +  + +L++L+                
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE----------- 387

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
                        +L   +      L  LDL+   L      S   NLH LK L LS + 
Sbjct: 388 -----------PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 179 FVTLPASI-NCLFNLEKLKLEDCKRLQSLPQLPPNV 213
                  + + L  L+ L L+             N 
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNS 471

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 39/208 (18%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLT---LKGCKNLVRLPSNI-NSLKSLKTLNL 56
           +E LREL L   DI+        L  L  L    L   +  + L +        L+ L+L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDL 407

Query: 57  LGCFKFENLLETV------GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGP 109
                    L+          +  L+ L++S + +      +F  +  L+ L+ +G +  
Sbjct: 408 -----AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF- 461

Query: 110 PSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSL 169
                                      SL  LG L  L LS C L          +L  +
Sbjct: 462 ------------------PKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKMM 502

Query: 170 KTLYLSKNNFVTLPASINCLFNLEKLKL 197
             + LS N   +       L +L+ + L
Sbjct: 503 NHVDLSHNRLTSSSIEA--LSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 12/202 (5%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLLGC-- 59
              L L+  DI  +       +    L   G +NL+ +   +  ++++SL          
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 60  FKFENLLETVGQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCN-GPPSSASCYL 117
                 +       S+E +++         S+ F     L+ L     +     S    L
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300

Query: 118 PFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYL 174
                L +    ++    L   S S   SLT L +             + NL +L+ L L
Sbjct: 301 S---TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 175 SKNNFVTLPASINCLFNLEKLK 196
           S ++  T       L NL  L+
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQ 379

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 38/178 (21%)

Query: 37  NLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-----GQVESLEELDISGTAIRCPPSS 91
            L  +P  +    S + L         N+L T+      ++ +L  LD++   I      
Sbjct: 23  GLNEIPGTL--PNSTECLEF-----SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 92  IFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLS 150
            F     L TL                            L  +   +LSG  +L  L   
Sbjct: 76  TFQSQHRLDTLVLTANP----------------------LIFMAETALSGPKALKHLFFI 113

Query: 151 DCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP 207
             G+        + N  +L++LYL  N+  ++          L+ L  ++   +  L 
Sbjct: 114 QTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLS 169

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 8e-16
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 42/225 (18%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           ++EL L    + ++    +   + L  L L    N++    ++ SL +L+TL+L      
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLDLESLSTLRTLDL-----N 88

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            N ++ +    S+E L  +   I     S    +  K +                     
Sbjct: 89  NNYVQELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNK--------------- 131

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
                  +  L          +  LDL    +          +  +L+ L L  N    +
Sbjct: 132 -------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 183 PASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTL 227
              +     L+ L L   K    L  + P  +       A +  +
Sbjct: 185 KGQVV-FAKLKTLDLSSNK----LAFMGPEFQ-----SAAGVTWI 219

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 49/201 (24%)

Query: 14  IKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKFENLLETV--- 69
           I E+  +    +      +    +L +  +++  S  ++K L+L G     N L  +   
Sbjct: 2   IHEIKQN---GNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSG-----NPLSQISAA 52

Query: 70  --GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRS 127
                  LE L++S   +      +  +  L+TL                          
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-------------------- 91

Query: 128 SDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SI 186
                  +  L    S+  L  ++  +    +    G     K +YL+ N    L     
Sbjct: 92  -------VQELLVGPSIETLHAANNNISR--VSCSRGQ--GKKNIYLANNKITMLRDLDE 140

Query: 187 NCLFNLEKLKLEDCKRLQSLP 207
            C   ++ L L+    + ++ 
Sbjct: 141 GCRSRVQYLDLKLN-EIDTVN 160

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLK 196
                 ++ +LDLS   L      +D+     L+ L LS N        +  L  L  L 
Sbjct: 29  LRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLD 86

Query: 197 LEDCKRLQSLPQLP 210
           L +   +Q L   P
Sbjct: 87  LNNN-YVQELLVGP 99

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 4   LRELLLDKTDIKEMPLS--IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
           ++ L L   +I  +  +        L  L L+    +  +   +     LKTL+L    K
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSN-K 202

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRG 105
              +         +  + +    +     ++   +NL+    RG
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.6 bits (187), Expect = 3e-15
 Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 37/200 (18%)

Query: 18  PLSIELLSGLVQLTLKGCKNLV-RLPSNINSLKSLKTLNLLGCFKFENLL-----ETVGQ 71
           P S+  L  L  L + G  NLV  +P  I  L  L  L +         +     + + Q
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-----THTNVSGAIPDFLSQ 123

Query: 72  VESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN--GPPSSASCYLPFPINLMRRSS 128
           +++L  LD S  A+    P SI  + NL  ++F G    G           P +    S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA---------IPDSYGSFSK 174

Query: 129 DLGALML----------PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
              ++ +          P+ + L +L  +DLS   L EG      G+  + + ++L+KN+
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNS 232

Query: 179 FV-TLPASINCLFNLEKLKL 197
               L   +    NL  L L
Sbjct: 233 LAFDLG-KVGLSKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 35/147 (23%)

Query: 68  TVGQVESLEELDISGTAIR---CPPSSIFLMKNLKTLSFRGCNG-----PPSSASCYLPF 119
           T  Q   +  LD+SG  +      PSS+  +  L  L   G N      PP+ A      
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL---- 100

Query: 120 PINLMRRSSDLGALML----------PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSL 169
                   + L  L +            LS + +L  LD S   L  G +P  I +L +L
Sbjct: 101 --------TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNL 151

Query: 170 KTLYLSKNNFV-TLPASINCLFNLEKL 195
             +    N     +P S     +  KL
Sbjct: 152 VGITFDGNRISGAIPDSY---GSFSKL 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 42/203 (20%)

Query: 18  PLSIELLSGLVQLTLKGCKNLV-RLPSNINSLKSLKT-LNLLGCFKFENLL-----ETVG 70
           P SI  L  LV +T      +   +P +  S   L T + +       N L      T  
Sbjct: 142 PPSISSLPNLVGITF-DGNRISGAIPDSYGSFSKLFTSMTI-----SRNRLTGKIPPTFA 195

Query: 71  QVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSD 129
            + +L  +D+S   +           KN + +     +         L F +        
Sbjct: 196 NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS---------LAFDL-------- 237

Query: 130 LGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINC 188
                   +    +L  LDL +  +  G +P  +  L  L +L +S NN    +P   N 
Sbjct: 238 ------GKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN- 289

Query: 189 LFNLEKLKLEDCKRLQSLPQLPP 211
           L   +     + K L   P LP 
Sbjct: 290 LQRFDVSAYANNKCLCGSP-LPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 136 PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEK 194
            SL+ L  L  L +       G IP  I  L  L  LY++  N    +P  ++ +  L  
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 195 LKLEDCK 201
           L      
Sbjct: 130 LDFSYNA 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 29/219 (13%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNL------- 56
            + L + +  +K+       L  L  LTL    N   +     +L SL  L+L       
Sbjct: 309 WQSLSIIRCQLKQ--FPTLDLPFLKSLTLTM--NKGSISFKKVALPSLSYLDLSRNALSF 364

Query: 57  LGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNG----PPSS 112
            GC  + +L        SL  LD+S        ++   ++ L+ L F+  +        S
Sbjct: 365 SGCCSYSDLGTN-----SLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFS 418

Query: 113 ASCYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSL 169
           A   L     L+      ++          GL SL  L ++     +  + +   N  +L
Sbjct: 419 AFLSLE---KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 170 KTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
             L LSK     +   + + L  L+ L +     L  L 
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLD 513

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 9e-15
 Identities = 57/268 (21%), Positives = 92/268 (34%), Gaps = 38/268 (14%)

Query: 1   MECLRELLLDKTDIKEMP---LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLL 57
           +  L  L L +  +        S    + L  L L      + + +N   L+ L+ L+  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF- 406

Query: 58  GCFKFENLLETVGQVE------SLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPP 110
                 + L+ V +         L  LDIS T  +     IFL + +L TL   G +   
Sbjct: 407 ----QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 111 SSASCYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLH 167
           ++ S       NL         L  +       L  L  L++S   L      S    L+
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLY 521

Query: 168 SLKTLYLSKNNFVTLPASINCLF-NLEKLKLE------DC------KRLQSLPQLPPNVE 214
           SL TL  S N   T    +     +L    L        C      + ++   Q   NVE
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

Query: 215 KVRVNGCASLVTLLGA--LKLRKSSCTI 240
           ++    CA+ V +  +  L    S+C +
Sbjct: 582 QMT---CATPVEMNTSLVLDFNNSTCYM 606

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 30/194 (15%)

Query: 36  KNLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-----GQVESLEELDISGTAIRC-PP 89
           + L ++P +I S  S K ++L       N L+ +          L+ LD+S   I     
Sbjct: 21  QKLSKVPDDIPS--STKNIDLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 90  SSIFLMKNLKTLSFRGCN--GPPSSASCYLPFPINLMR---RSSDLGALMLPSLSGLGSL 144
            +   + +L  L   G         +   L    +L       + L +L    +  L +L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT---SLENLVAVETKLASLESFPIGQLITL 130

Query: 145 TKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-----NCLFNLEKLKLED 199
            KL+++   +    +P+   NL +L  + LS N   T+  +              L +  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 200 CKRLQSLPQLPPNV 213
                 +  +    
Sbjct: 191 NP----IDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 38/252 (15%), Positives = 75/252 (29%), Gaps = 51/252 (20%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCK-NLVRLPSNINSLKSLKTLNL----L 57
           L  L+  +T +  +    I  L  L +L +     +  +LP+  ++L +L  ++L    +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 58  GCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN---GPPSSAS 114
                 +L       +    LD+S   I       F    L  L+ RG         +  
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 115 CYLP--------------------FPINLMRRSSDLGALML------------PSLSGLG 142
             L                     F  ++M    D+                      L 
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 143 SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKL-----KL 197
           +++ + L+   +       D+      ++L + +      P     L  L+ L     K 
Sbjct: 286 NVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKG 340

Query: 198 EDCKRLQSLPQL 209
               +  +LP L
Sbjct: 341 SISFKKVALPSL 352

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 39/223 (17%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L+ L L + +I+ +   +   L  L  L L G       P + + L SL+ L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA-----V 112

Query: 63  ENLLETV-----GQVESLEELDISGTAIRC--PPSSIFLMKNLKTLSFRGCNGPPSSASC 115
           E  L ++     GQ+ +L++L+++   I     P+    + NL  +              
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-------- 164

Query: 116 YLPFPINLMRRSSDLGALMLPSLSGLG-SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYL 174
                I        +    L  L         LD+S   +    I         L  L L
Sbjct: 165 -----I------QTITVNDLQFLRENPQVNLSLDMSLNPIDF--IQDQAFQGIKLHELTL 211

Query: 175 SKNNFVT--LPASINCLFNLEKLKL--EDCKRLQSLPQLPPNV 213
             N   +  +   +  L  L   +L   + K  ++L    P++
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 42/214 (19%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGC-F 60
           L  L+L    I+   P S   L+ L  L       L  L S  I  L +LK LN+     
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFI 140

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIF-----LMKNLKTLSFRGCNGPPSSASC 115
               L      + +L  +D+S   I+    +         +   +L              
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-------- 192

Query: 116 YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLS 175
                         +  +   +  G+  L +L L         + + + NL  L    L 
Sbjct: 193 --------------IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 176 KNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209
              F           +   L++ +   ++ L  +
Sbjct: 238 LGEF----------KDERNLEIFEPSIMEGLCDV 261

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           +  L  D+  IK +   +E L+ L Q+      N +   + + +L  L  + +       
Sbjct: 48  VTTLQADRLGIKSID-GVEYLNNLTQINFSN--NQLTDITPLKNLTKLVDILM-----NN 99

Query: 64  NLLETV---GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLP 118
           N +  +     + +L  L +    I      +  + NL  L           + +     
Sbjct: 100 NQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGL--- 155

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
              +L + S       L  L+ L +L +LD+S   + +    S +  L +L++L  + N 
Sbjct: 156 --TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQ 210

Query: 179 FVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209
              +   +  L NL++L L   + L+ +  L
Sbjct: 211 ISDITP-LGILTNLDELSLNGNQ-LKDIGTL 239

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L L    I ++   ++ L+ L +L L    N +   S ++ L SL+ L+        
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSS--NTISDISALSGLTSLQQLSFGNQVTD- 169

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
             L+ +  + +LE LDIS   +      +  + NL++L                   I+ 
Sbjct: 170 --LKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ-------------IS- 212

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
                      +  L  L +L +L L+   L +      + +L +L  L L+ N    L 
Sbjct: 213 ----------DITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLA 259

Query: 184 ASINCLFNLEKLKLEDCKRLQSLPQL 209
             ++ L  L +LKL   + + ++  L
Sbjct: 260 P-LSGLTKLTELKLGANQ-ISNISPL 283

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 7e-14
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 19/207 (9%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L+     I ++   + +L+ L +L+L G  N ++    + SL +L  L+L    +  
Sbjct: 201 LESLIATNNQISDIT-PLGILTNLDELSLNG--NQLKDIGTLASLTNLTDLDLANN-QIS 256

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           N L  +  +  L EL +    I    S +  +  L  L          S    L    NL
Sbjct: 257 N-LAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLK---NL 311

Query: 124 MRRSSDLGA---LMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
                 L       +  +S L  L +L   +  + +    S + NL ++  L    N   
Sbjct: 312 --TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQIS 366

Query: 181 TLPASINCLFNLEKLKLEDCKRLQSLP 207
            L   +  L  + +L L D     + P
Sbjct: 367 DLT-PLANLTRITQLGLNDQA-WTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 52/211 (24%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L L    I      I  LSGL  L      N V     + +L +L+ L++    K  
Sbjct: 136 LNRLELSSNTIS----DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVS 190

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLPFPI 121
           ++   + ++ +LE L  +   I      + ++ NL  LS  G       + AS       
Sbjct: 191 DI-SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASL-----T 243

Query: 122 NLMRRSSDLGA---LMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
           NL     DL       L  LSGL  LT+L L    +      S +  L +L  L L++N 
Sbjct: 244 NL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISN---ISPLAGLTALTNLELNENQ 298

Query: 179 FVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209
              +   I+ L NL  L L     +  +  +
Sbjct: 299 LEDIS-PISNLKNLTYLTLYFNN-ISDISPV 327

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 27/195 (13%), Positives = 61/195 (31%), Gaps = 50/195 (25%)

Query: 31  TLKGCKNLVRL---------PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS 81
           T       ++            +   L  + TL        ++ ++ V  + +L +++ S
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL-GIKS-IDGVEYLNNLTQINFS 76

Query: 82  GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL 141
              +      +  +  L  +                   I             +  L+ L
Sbjct: 77  NNQLTDIT-PLKNLTKLVDILMNNNQ-------------IA-----------DITPLANL 111

Query: 142 GSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKL---- 197
            +LT L L +  + +      + NL +L  L LS N    +  +++ L +L++L      
Sbjct: 112 TNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQV 167

Query: 198 ------EDCKRLQSL 206
                  +   L+ L
Sbjct: 168 TDLKPLANLTTLERL 182

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 61/221 (27%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL---------PSNINSLKSLKTL 54
             + +L KT++ +              +      +  L            +  L +L  +
Sbjct: 26  KMKTVLGKTNVTDTV------------SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 73

Query: 55  NLLGCFKFENLLETV---GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPS 111
           N        N L  +     +  L ++ ++   I      +  + NL  L+         
Sbjct: 74  NF-----SNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ---- 123

Query: 112 SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT 171
                    I             +  L  L +L +L+LS   + +    S +  L SL+ 
Sbjct: 124 ---------IT-----------DIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQ 160

Query: 172 LYLSKNNFVTLPASINCLFNLEKLKLEDCK--RLQSLPQLP 210
           L    N    L   +  L  LE+L +   K   +  L +L 
Sbjct: 161 LSFG-NQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLT 199

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
           + + + L    K  L    + +        +L  + TL   +    ++   +  L NL +
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQ 72

Query: 195 LKLEDCKRLQSLPQL 209
           +   + + L  +  L
Sbjct: 73  INFSNNQ-LTDITPL 86

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 35/184 (19%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L L   +I ++   +  L+ L +L      N V   S++ +L ++  L+     +  
Sbjct: 311 LTYLTLYFNNISDIS-PVSSLTKLQRLFFYN--NKVSDVSSLANLTNINWLSAGHN-QIS 366

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           +L   +  +  + +L ++  A    P +     ++                         
Sbjct: 367 DL-TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV--------------------- 404

Query: 124 MRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF--- 179
               +  GAL+ P+ +S  GS T+ D++                    T+      F   
Sbjct: 405 ---KNVTGALIAPATISDGGSYTEPDIT--WNLPSYTNEVSYTFSQPVTIGKGTTTFSGT 459

Query: 180 VTLP 183
           VT P
Sbjct: 460 VTQP 463

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.4 bits (188), Expect = 4e-15
 Identities = 44/297 (14%), Positives = 85/297 (28%), Gaps = 50/297 (16%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           ++EL L    + ++    +   + L  L L    N++    ++ SL +L+TL+L      
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLDLESLSTLRTLDL-----N 88

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLP-- 118
            N ++ +    S+E L  +   I     S    +  K +                     
Sbjct: 89  NNYVQELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 119 ----------FPINLMRRSSDLGAL-----------MLPSLSGLGSLTKLDLSDCGLGEG 157
                       +N    ++    L            +        L  LDLS   L   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF- 205

Query: 158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK-----------RLQSL 206
            +  +  +   +  + L  N  V +  ++    NLE   L               + Q +
Sbjct: 206 -MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 207 PQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIID--FVDSLKLLGKNGLAISMLR 261
             +     K          T+          C  +   F D L  L +   A+   +
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 10/212 (4%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L L    I ++   + + + L  L L   K L  +     S   +  ++L    K  
Sbjct: 171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLV 227

Query: 64  NLLETVGQVESLEELDISGTAIRC--PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
            + + +   ++LE  D+ G    C          + ++T++ +               P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 122 NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE---GAIPSDIGNLHSLKTLYLSKNN 178
                +     L  P    L +L + + +           +  +  N    + +   K  
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 179 FVTLPASI-NCLFNLEKLKLEDCKRLQSLPQL 209
           + T+   +         L+ +  K L      
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKK-KALDEQVSN 378

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 49/201 (24%)

Query: 14  IKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKFENLLETV--- 69
           I E+       +      +    +L +  +++  S  ++K L+L G     N L  +   
Sbjct: 2   IHEIKQ---NGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSG-----NPLSQISAA 52

Query: 70  --GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRS 127
                  LE L++S   +      +  +  L+TL                          
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL-DLESLSTLRTL-------------------------- 85

Query: 128 SDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SI 186
            DL    +  L    S+  L  ++  +    +    G     K +YL+ N    L     
Sbjct: 86  -DLNNNYVQELLVGPSIETLHAANNNISR--VSCSRGQ--GKKNIYLANNKITMLRDLDE 140

Query: 187 NCLFNLEKLKLEDCKRLQSLP 207
            C   ++ L L+    + ++ 
Sbjct: 141 GCRSRVQYLDLKLN-EIDTVN 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLK 196
                 ++ +LDLS   L      +D+     L+ L LS N        +  L  L  L 
Sbjct: 29  LRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLD 86

Query: 197 LEDCKRLQSLPQLP 210
           L +   +Q L   P
Sbjct: 87  LNNN-YVQELLVGP 99

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 7e-15
 Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 14/205 (6%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L  L +   +++ +     +  + L  L L     L  +   ++ + SL   N+      
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSY---- 201

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            NLL T+    ++EELD S  +I      +     L  L  +  N   ++     P  + 
Sbjct: 202 -NLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVE 258

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
           +    ++L  +M      +  L +L +S+  L    +      + +LK L LS N+ + +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHV 316

Query: 183 PASINCLFNLEKLKLEDCKRLQSLP 207
             +      LE L L+    + +L 
Sbjct: 317 ERNQPQFDRLENLYLDHN-SIVTLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 31/213 (14%)

Query: 13  DIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL-LETVGQ 71
           + K +  +++       + +      V       +L + K +          L    +  
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDS 73

Query: 72  VESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDL 130
              +E L+++   I    +  F     ++ L                            +
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----------------------I 111

Query: 131 GALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NC 188
             L       +  LT L L    L    +P  I  N   L TL +S NN   +       
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 189 LFNLEKLKLEDCKRLQSLP-QLPPNVEKVRVNG 220
             +L+ L+L    RL  +   L P++    V+ 
Sbjct: 170 TTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSY 201

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L E+ L   +++++       +  L +L +   + LV L      + +LK L+L      
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HL 313

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            ++     Q + LE L +   +I     S      LK L+    N      +       N
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSH-N--DWDCNSLRALFRN 368

Query: 123 LMRRSSD 129
           + R + D
Sbjct: 369 VARPAVD 375

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 9e-15
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 39/187 (20%)

Query: 36  KNLVRLPSNINS--------LKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC 87
           K  +      +S        + SL  + L       +L   +    ++++L I+      
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATN 80

Query: 88  PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKL 147
             + I  + NL+ L   G +                      + +  +P+LSGL SLT L
Sbjct: 81  Y-NPISGLSNLERLRIMGKD----------------------VTSDKIPNLSGLTSLTLL 117

Query: 148 DLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK-----R 202
           D+S     +  + + I  L  + ++ LS N  +T    +  L  L+ L ++         
Sbjct: 118 DISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 203 LQSLPQL 209
           ++  P+L
Sbjct: 177 IEDFPKL 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 56/178 (31%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT---LKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           +++L ++         +   +SGL  L    + G         N++ L SL  L++    
Sbjct: 68  IKDLTINNIHAT----NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI---- 119

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
              +       +  +  L                   + ++                   
Sbjct: 120 -SHSAH-DDSILTKINTL-----------------PKVNSIDLSYNG------------- 147

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
                  +D     +  L  L  L  L++   G+ +      I +   L  LY     
Sbjct: 148 -----AITD-----IMPLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAFSQT 192

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 14/205 (6%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L  L +   +++ +     +  + L  L L     L  +   ++ + SL   N+      
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSY---- 195

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            NLL T+    ++EELD S  +I      +     L  L  +  N   ++     P  + 
Sbjct: 196 -NLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVE 252

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
           +    ++L  +M      +  L +L +S+  L    +      + +LK L LS N+ + +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHV 310

Query: 183 PASINCLFNLEKLKLEDCKRLQSLP 207
             +      LE L L+    + +L 
Sbjct: 311 ERNQPQFDRLENLYLDHN-SIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 40/193 (20%)

Query: 37  NLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-----GQVESLEELDISGTAIRCPPSS 91
           ++     +I  L + K +         + +  +          +E L+++   I    + 
Sbjct: 34  DVYFGFEDIT-LNNQKIVTFKN-----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87

Query: 92  IFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLS 150
            F     ++ L                            +  L       +  LT L L 
Sbjct: 88  AFAYAHTIQKLYMGFNA----------------------IRYLPPHVFQNVPLLTVLVLE 125

Query: 151 DCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP- 207
              L    +P  I  N   L TL +S NN   +         +L+ L+L    RL  +  
Sbjct: 126 RNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL 182

Query: 208 QLPPNVEKVRVNG 220
            L P++    V+ 
Sbjct: 183 SLIPSLFHANVSY 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 22/177 (12%), Positives = 58/177 (32%), Gaps = 42/177 (23%)

Query: 41  LPSNINSLKSLK-------TLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIF 93
           + SN+              T ++   F+   L        + + +    + +R  P+++ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL-------NNQKIVTFKNSTMRKLPAALL 65

Query: 94  L-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDC 152
              + ++ L+                           +  +   + +   ++ KL +   
Sbjct: 66  DSFRQVELLNLNDLQ----------------------IEEIDTYAFAYAHTIQKLYMGFN 103

Query: 153 GLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
            +    +P  +  N+  L  L L +N+  +LP  I +    L  L + +   L+ + 
Sbjct: 104 AIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIE 157

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L E+ L   +++++       +  L +L +   + LV L      + +LK L+L      
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HL 307

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            ++     Q + LE L +   +I     S      LK L+    N      +       N
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSH-N--DWDCNSLRALFRN 362

Query: 123 LMRRSSD 129
           + R + D
Sbjct: 363 VARPAVD 369

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 35/205 (17%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT---LKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           L  L L +  +       +   G   L    L     ++ + SN   L+ L+ L+     
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS- 406

Query: 61  KFENLLETV--GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYL 117
             + + E      + +L  LDIS T  R   + IF  + +L+ L   G +          
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---------- 456

Query: 118 PFPINLMRRSSDLGALMLP-SLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLS 175
                            LP   + L +LT LDLS C L +  +      +L SL+ L ++
Sbjct: 457 ------------FQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMA 502

Query: 176 KNNFVTLPASI-NCLFNLEKLKLED 199
            N   ++P  I + L +L+K+ L  
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 15/208 (7%)

Query: 9   LDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF--KFENLL 66
           L+  + K        L  L +LT    K      S ++ L SL+ L+L            
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 67  ETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN---GPPSSASCYLPFPINL 123
           ++     SL+ LD+S   +    S+   ++ L+ L F+  N       S    L    NL
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NL 423

Query: 124 MR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
           +      +          +GL SL  L ++     E  +P     L +L  L LS+    
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 181 TLPASI-NCLFNLEKLKLEDCKRLQSLP 207
            L  +  N L +L+ L +    +L+S+P
Sbjct: 484 QLSPTAFNSLSSLQVLNMASN-QLKSVP 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 36  KNLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDISGTAIRCPPSSIFL 94
            N  ++P N+    S K L+L       +L          L+ LD+S   I+      + 
Sbjct: 17  LNFYKIPDNLPF--STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 95  -MKNLKTLSFRGCN--GPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD 151
            + +L TL   G         A   L     L+   ++L +L    +  L +L +L+++ 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLP 210
             +    +P    NL +L+ L LS N   ++    +  L  +  L L     L  +  + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 211 PNV 213
           P  
Sbjct: 194 PGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 42/218 (19%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCFK 61
            + L L    ++ +   S      L  L L  C  +  +      SL  L TL L G   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG--- 85

Query: 62  FENLLETV-----GQVESLEELDISGTAIRCPPSSIF-LMKNLKTLSFRGCNGPPSSASC 115
             N ++++       + SL++L    T +    +     +K LK L+             
Sbjct: 86  --NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-------- 135

Query: 116 YLPFPINLMRRSSDLGALMLP-SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLK---- 170
                         + +  LP   S L +L  LDLS   + +    +D+  LH +     
Sbjct: 136 --------------IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNL 180

Query: 171 TLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
           +L LS N    +         L KL L +     ++ +
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 48/266 (18%), Positives = 86/266 (32%), Gaps = 29/266 (10%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLG-CF 60
           L  L+L    I+ + L     LS L +L      NL  L +  I  LK+LK LN+     
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLI 136

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           +   L E    + +LE LD+S   I+    +    + L  +               L   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--RVLHQMP-------------LLNLS 181

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
           ++L    + +  +   +   +  L KL L +       + + I  L  L+   L    F 
Sbjct: 182 LDL--SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 181 TLPA----SINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKS 236
                     + L  L  L +E+  RL  L     ++  +           L ++ + + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEE-FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 237 SCTIIDFVDSLKLLGKNGLAISMLRE 262
                 +    + L            
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQFPT 321

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 54/304 (17%), Positives = 93/304 (30%), Gaps = 32/304 (10%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L  L      I E  L +     L +L      N+ +L   +N    L  L+        
Sbjct: 172 LTTLDCSFNKITE--LDVSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDC-----SS 221

Query: 64  NLLET--VGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
           N L    V  +  L   D S   +     S      L TL     +      +       
Sbjct: 222 NKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEIDLT---HNTQ 276

Query: 122 NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT 181
            +  ++     +    ++    L  LD    G+ E     D+     L  LYL+      
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE----LDLSQNPKLVYLYLNNTELTE 332

Query: 182 LPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASL-VTLLGALKLRKSSCTI 240
           L   ++    L+ L   +   +Q    +   +  +  N  A      +    L  +S TI
Sbjct: 333 LD--VSHNTKLKSLSCVNAH-IQDFSSV-GKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 241 IDFVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKW---FMYQNEGSSIT 297
                S  LL + G  +++      V    ++  +     ++ P     F  +N     T
Sbjct: 389 A---VSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGT 445

Query: 298 VTRP 301
           VT P
Sbjct: 446 VTTP 449

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 41/229 (17%), Positives = 63/229 (27%), Gaps = 54/229 (23%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           +  L  L    + I +M   IE L+GL +L      N+  L   ++   +L  L      
Sbjct: 41  LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLAC---- 92

Query: 61  KFENLLET--VGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLP 118
              N L    V  +  L  L+     +     S      L  L+                
Sbjct: 93  -DSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQ--NPLLTYLNCARNT----------- 138

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
                         L    +S    LT+LD             D+     L TL  S N 
Sbjct: 139 --------------LTEIDVSHNTQLTELDCHLNKKIT---KLDVTPQTQLTTLDCSFNK 181

Query: 179 FVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTL 227
              L   ++    L +L  +    +  L           +N    L  L
Sbjct: 182 ITELD--VSQNKLLNRLNCDTNN-ITKLD----------LNQNIQLTFL 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 45/211 (21%), Positives = 72/211 (34%), Gaps = 31/211 (14%)

Query: 24  LSGLVQLTLKGCKNLVRLPSNINS------LKSLKTLNLLGCF--KFENLLETVGQVESL 75
                 L LK  K L    +   +      L SL+ L+L            ++     SL
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 76  EELDISGTAIRCPPSSIFLMKNLKTLSFRGCN---GPPSSASCYLPFPINLMR---RSSD 129
           + LD+S   +    S+   ++ L+ L F+  N       S    L    NL+      + 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTH 432

Query: 130 LGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINC 188
                    +GL SL  L ++     E  +P     L +L  L LS+     L P + N 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 189 LFNLEKLKL-------------EDCKRLQSL 206
           L +L+ L +             +    LQ L
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 48/245 (19%), Positives = 82/245 (33%), Gaps = 27/245 (11%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLT---LKGCKNLVRLPSNINSLKSLKTLNLL 57
           +  L  L L +  +       +   G   L    L     ++ + SN   L+ L+ L+  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ 404

Query: 58  GC-FKFENLLETVGQVESLEELDISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSASC 115
               K  +       + +L  LDIS T  R         + +L+ L   G +   +    
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 116 YLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTL 172
                 NL         L  L   + + L SL  L++S               L+SL+ L
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVL 523

Query: 173 YLSKNNFVTLPASI--NCLFNLEKLKLE------DC------KRLQSLPQLPPNVEKVRV 218
             S N+ +T       +   +L  L L        C      + ++   QL   VE++  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME- 582

Query: 219 NGCAS 223
             CA+
Sbjct: 583 --CAT 585

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 36  KNLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDISGTAIRCPPSSIFL 94
            N  ++P N+    S K L+L       +L          L+ LD+S   I+      + 
Sbjct: 17  LNFYKIPDNLPF--STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 95  -MKNLKTLSFRGCN--GPPSSASCYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLD 148
            + +L TL   G         A   L    +L +     ++L +L    +  L +L +L+
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLS---SLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 149 LSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLE 198
           ++   +    +P    NL +L+ L LS N   ++    +  L  +  L L 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 21/227 (9%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCK-NLVRLPSNINSLKSLKTLNLLGCFK 61
           L++L+  +T++  +    I  L  L +L +        +LP   ++L +L+ L+L    K
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-K 160

Query: 62  FENLL-ETVGQVESLE----ELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPSSAS 114
            +++    +  +  +      LD+S   +       F    L  L+ R            
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 115 C-------YLPFPINLMRRSSDLGALMLPSLSGLGSLT--KLDLSDCGLGEGAIPSDIGN 165
                        +   R   +L      +L GL +LT  +  L+        I      
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 166 LHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPN 212
           L ++ +  L       +       F  + L+L +CK     P L   
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCK-FGQFPTLKLK 325

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 18/238 (7%)

Query: 4   LRELLLDKTDI-KEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L+ L L + +I      + + LS L  L L G           + L SL+ L  +     
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NL 112

Query: 63  ENLLE-TVGQVESLEELDISGTAIRC--PPSSIFLMKNLKTLSFRGCN--GPPSSASCYL 117
            +L    +G +++L+EL+++   I+    P     + NL+ L            +    L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 118 P----FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
                  ++L    + +  +   +   +  L KL L +       + + I  L  L+   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 174 LSKNNFVTLPA----SINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTL 227
           L    F           + L  L  L +E+  RL  L     ++  +  N   ++ + 
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEF-RLAYLDYYLDDIIDLF-NCLTNVSSF 287

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 34/233 (14%)

Query: 3   CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCK--NLVRLPSNINS---------LKSL 51
             R  +L      E+   +  +  L ++    C    L     + +            ++
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 52  KTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIF-LMKNLKTLSFRGCNGPP 110
           + L++   + F +L      +E ++ + +  + +   P S    +K+L+ L         
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE----- 343

Query: 111 SSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE-GAIPSDIGNLHSL 169
                      NLM    +             SL  L LS   L         +  L +L
Sbjct: 344 -----------NLM---VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 170 KTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGC 221
            +L +S+N F  +P S      +  L L     ++ +   +P  +E + V+  
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 22/215 (10%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
           +R L + +  +         LL  + ++T++  K +  +P +    LKSL+ L+L     
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 62  FENLLET---VGQVESLEELDISG---TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC 115
            E  L+     G   SL+ L +S     +++     +  +KNL +L        P   SC
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 116 YLPFPINLMRRSSDLGALMLPSLS--GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
             P  +  +    +L +  +  +      +L  LD+S+  L           L  L+ LY
Sbjct: 407 QWPEKMRFL----NLSSTGIRVVKTCIPQTLEVLDVSNNNLDS--FSL---FLPRLQELY 457

Query: 174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
           +S+N   TLP +      L  +K+   + L+S+P 
Sbjct: 458 ISRNKLKTLPDASL-FPVLLVMKISRNQ-LKSVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 52/279 (18%), Positives = 94/279 (33%), Gaps = 36/279 (12%)

Query: 4   LRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
           ++ L L    I  +    +   + L  L LK  + +  +  +   SL SL+ L+L     
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDL----- 81

Query: 62  FENLLETV-----GQVESLEELDISGTAIRC-PPSSIFL-MKNLKTLSFRGCNG---PPS 111
            +N L ++     G + SL+ L++ G   +    +S+F  + NL+TL             
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 112 SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGN-LHSLK 170
                L     L  ++  L      SL  +  +  L L         +     + L S++
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF--LLEIFADILSSVR 199

Query: 171 TLYLSKNNFVTLPASINCL-----------FNLEKLKLEDCKRLQSLPQLPPNVEKVRVN 219
            L L   N      S   +           F    L  E    L  L +    + +V  +
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 220 GCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAIS 258
            C    TL G      S   ++  +  ++ +    L I 
Sbjct: 260 DC----TLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 38/180 (21%)

Query: 36  KNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVG-----QVESLEELDISGTAIRCPPS 90
           ++   +PS +    ++K+L+L       N +  +G        +L+ L +  + I     
Sbjct: 15  RSFTSIPSGL--TAAMKSLDL-----SFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 91  SIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDL 149
             F  + +L+ L     +                      L +L       L SL  L+L
Sbjct: 68  DAFYSLGSLEHLDLSDNH----------------------LSSLSSSWFGPLSSLKYLNL 105

Query: 150 SDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL--PASINCLFNLEKLKLEDCKRLQSLP 207
                    + S   NL +L+TL +      +         L +L +L+++    L++  
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQ 164

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 41/247 (16%), Positives = 79/247 (31%), Gaps = 38/247 (15%)

Query: 22  ELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCFKFENLLETV-GQVESLEELD 79
            L + +  L L     +  +    + +  +L+ L L    +   +       + SLE LD
Sbjct: 23  GLTAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLD 80

Query: 80  ISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSL 138
           +S   +    SS F  + +LK L+  G                           L + SL
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNP----------------------YQTLGVTSL 118

Query: 139 -SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLK 196
              L +L  L + +          D   L SL  L +   +     + S+  + ++  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 197 LEDCKRLQSLPQLPPNVEKVRVNGCASLVTL-LGALKLRKSSCTIIDFVDSLKLLGKNGL 255
           L   +       L         +  +S+  L L    L +   + +   +    + K   
Sbjct: 179 LHLSE----SAFLLEIF----ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 256 AISMLRE 262
             S+L +
Sbjct: 231 RGSVLTD 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 51/247 (20%), Positives = 90/247 (36%), Gaps = 37/247 (14%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKN-LVRLPSNINSLKSLKTLNLLGCFK 61
           L +L L    +       +   G   L  L    N ++ + SN   L+ L+ L+      
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH--- 110

Query: 62  FENLLETVGQVE------SLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSAS 114
             + L+ + +        +L  LDIS T  R   + IF  + +L+ L   G +   +   
Sbjct: 111 --SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 115 CYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLK 170
                  NL         L  L   + + L SL  L++S       ++ +     L+SL+
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQ 226

Query: 171 TLYLSKNNFVTLPASI--NCLFNLEKLKLE------DC------KRLQSLPQLPPNVEKV 216
            L  S N+ +T       +   +L  L L        C      + ++   QL   VE++
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 286

Query: 217 RVNGCAS 223
               CA+
Sbjct: 287 E---CAT 290

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 33/204 (16%)

Query: 23  LLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNL---------LGCFKFENLLETVGQV 72
           + S   +L L+  K L  LP  + + L  L  L+L                         
Sbjct: 26  IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT------- 77

Query: 73  ESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN---GPPSSASCYLPFPINLMRRSSD 129
            SL+ LD+S   +    S+   ++ L+ L F+  N       S    L    NL     D
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NL--IYLD 132

Query: 130 LGALMLPSLS-----GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA 184
           +              GL SL  L ++     E  +P     L +L  L LS+     L  
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 185 SI-NCLFNLEKLKLEDCKRLQSLP 207
           +  N L +L+ L +       SL 
Sbjct: 193 TAFNSLSSLQVLNMSHN-NFFSLD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASINCLFNLEKL 195
               L  LTKL LS  GL      S       SLK L LS N  +T+ ++   L  LE L
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106

Query: 196 KLEDCKRLQSLPQ 208
             +    L+ + +
Sbjct: 107 DFQHS-NLKQMSE 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 23/227 (10%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L  L L   ++  +   S   L  L    L+          +++ L +++ LNL   F  
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 63  ENL---------LETVGQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRG----CNG 108
           +++           +   ++ LE L++    I    S++F  + NLK LS          
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 109 PPSSASCYLPFP----INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIG 164
             +     L       +NL    + +  +   + S LG L  LDL    +G+     +  
Sbjct: 370 LTNETFVSLAHSPLHILNL--TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 165 NLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQLP 210
            L ++  +YLS N ++ L   S   + +L++L L     L+++   P
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSP 473

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 21/200 (10%)

Query: 4   LRELLLDKTDIKEM--PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF- 60
           L  L L   +I +         L  + ++ L   K L    ++   + SL+ L L     
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 61  -KFENLLETVGQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLP 118
              ++       + +L  LD+S   I      +   ++ L+ L  +  N           
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----------- 515

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
             +  + + ++ G  +   L GL  L  L+L   G  +        +L  LK + L  NN
Sbjct: 516 --LARLWKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNN 571

Query: 179 FVTLPASI-NCLFNLEKLKL 197
             TLPAS+ N   +L+ L L
Sbjct: 572 LNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 33/231 (14%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSN---------INSLKSLKT 53
           L    L+  +I+ +   S+  L  +  L LK       +               LK L+ 
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 54  LNLLGCFKFENLLETVGQVESLEELDISG--TAIRCPPSSIFL---MKNLKTLSFRGCN- 107
           LN+               + +L+ L +S   T++R   +  F+      L  L+      
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 108 -GPPSSASCYLPFPINLMRRSSDL------GALMLPSLSGLGSLTKLDLSDCGLGEGAIP 160
               S A  +L     L     DL        L      GL ++ ++ LS          
Sbjct: 394 SKIESDAFSWLGHLEVL-----DLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTR 447

Query: 161 SDIGNLHSLKTLYLSKNNF---VTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
           +    + SL+ L L +       + P+    L NL  L L +   + ++  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 26/229 (11%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLK-----GCKNLVRLPSN-INSLKSLKTL 54
           +  L+ L L  +      L+ E    L    L          + ++ S+  + L  L+ L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVL 410

Query: 55  NLLGC-FKFENLLETVGQVESLEELDISGTAIR-CPPSSIFLMKNLKTLSFRGCN--GPP 110
           +L       E   +    +E++ E+ +S         +S  L+ +L+ L  R        
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 111 SSASCYLPFP----INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL-------GEGAI 159
           SS S + P      ++L   ++++  +    L GL  L  LDL    L         G  
Sbjct: 471 SSPSPFQPLRNLTILDL--SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 160 PSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP 207
              +  L  L  L L  N F  +P      LF L+ + L     L +LP
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 40/224 (17%), Positives = 74/224 (33%), Gaps = 30/224 (13%)

Query: 4   LRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCFK 61
           L  L +    I ++ P   + L  L  L L+    L +L         +L  L+L     
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHL----- 104

Query: 62  FENLLETV-----GQVESLEELDISGTAIRC-PPSSIFLMKNLKTLSFRGCN--GPPSSA 113
             N ++ +      + ++L  LD+S   +      +   ++NL+ L           S  
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 114 SCYLPFP----INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIG---NL 166
                      + L   S+ +          +G L  L L++  LG  ++   +      
Sbjct: 165 LDIFANSSLKKLEL--SSNQIKEFSPGCFHAIGRLFGLFLNNVQLG-PSLTEKLCLELAN 221

Query: 167 HSLKTLYLSKNNFVTLPASI---NCLFNLEKLKLEDCKRLQSLP 207
            S++ L LS +   T   +        NL  L L     L  + 
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVG 264

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 14/167 (8%)

Query: 37  NLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDISGTAIRCPPSSIFL- 94
            L ++P ++    ++  LNL    +   L      +   L  LD+    I      +   
Sbjct: 15  KLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71

Query: 95  MKNLKTLSFRGCN--GPPSSASCYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDL 149
           +  LK L+ +             +     NL      S+ +  +         +L  LDL
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCT---NLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 150 SDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLK 196
           S  GL           L +L+ L LS N    L +    +F    LK
Sbjct: 129 SHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 143 SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCK 201
           S    D S   L +  +P D+    ++  L L+ N    L  A+      L  L +    
Sbjct: 5   SHEVADCSHLKLTQ--VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 202 RLQSLPQLPPNV 213
               + +L P +
Sbjct: 61  ----ISKLEPEL 68

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 3e-13
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 45/225 (20%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           + E +   T IK++    +  +  ++  LK  K  V      N L S+  +         
Sbjct: 1   MGETITVSTPIKQIF-PDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIA-----NN 52

Query: 64  NLLETVGQVE---SLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
           + +++V  ++   ++ +L ++G  +      +  +KNL  L                   
Sbjct: 53  SDIKSVQGIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENK------------- 98

Query: 121 INLMRRSSDLGAL-----------MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSL 169
           I  +    DL  L            +  L  L  L  L L +  + +    + +  L  L
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKL 155

Query: 170 KTLYLSKNNFVTLPASINCLFNLEKL-----KLEDCKRLQSLPQL 209
            TL L  N    +   +  L  L+ L      + D + L  L  L
Sbjct: 156 DTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNL 199

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 13/217 (5%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L+ L L+   I      I  L  L QL  L    N +   + ++ L  L TL+L    + 
Sbjct: 111 LKSLSLEHNGIS----DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QI 165

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            + +  +  +  L+ L +S   I     ++  +KNL  L         +    +    + 
Sbjct: 166 SD-IVPLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFS-QECLNKPINHQSNLVV 222

Query: 123 LMR-RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLH---SLKTLYLSKNN 178
               +++D   +    +S  G   K ++           S I                  
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

Query: 179 FVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEK 215
              L       ++++   ++      +    P    K
Sbjct: 283 TQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTK 319

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 30/224 (13%)

Query: 2   ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
           +  +E +L K   +           L +  L   +    L S + S K L+ L     + 
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWC 384

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
              ++  +  ++ L               ++     LK +            S +L    
Sbjct: 385 LLTIILLMRALDPLL----------YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434

Query: 122 NLMRRSSDLGAL--------MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
            L    +D+  L        +L  L  L  +T LDLS   L    +P  +  L  L+ L 
Sbjct: 435 VLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQ 492

Query: 174 LSKNNFVTLPASINCLFNLEKL--------KLEDCKRLQSLPQL 209
            S N    +   +  L  L++L        +    + L S P+L
Sbjct: 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 6e-09
 Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 33/199 (16%)

Query: 3   CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           CL  ++L    +  +    E L     L          L    +      ++  +     
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 63  ENL---------LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA 113
             L         L  + Q+  +  LD+S   +R  P ++  ++ L+ L            
Sbjct: 444 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-------- 495

Query: 114 SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
                   N +          +  ++ L  L +L L +  L + A    + +   L  L 
Sbjct: 496 --------NALEN--------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

Query: 174 LSKNNFVTLPASINCLFNL 192
           L  N+          L  +
Sbjct: 540 LQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 17/108 (15%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           +  L L    ++ +P ++  L  L  L       L  +   + +L  L+ L L       
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN----- 517

Query: 64  NLLETVGQVE------SLEELDISGTAIRCPPSS----IFLMKNLKTL 101
           N L+    ++       L  L++ G ++            ++ ++ ++
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 43/233 (18%), Positives = 67/233 (28%), Gaps = 55/233 (23%)

Query: 4   LRELLLDKTDIKEMP--LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
             +  L   +  E    L   L++   +L L    NL  LP N+     +  L +     
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNL--PPQITVLEITQN-A 91

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
             +L E       LE LD     +   P       +LK L                    
Sbjct: 92  LISLPELPAS---LEYLDACDNRLSTLPELP---ASLKHLDVDN---------------- 129

Query: 122 NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT 181
           N +          LP L     L  ++  +  L    +P    +   L+ L +  N    
Sbjct: 130 NQLTM--------LPEL--PALLEYINADNNQLTM--LPELPTS---LEVLSVRNNQLTF 174

Query: 182 LPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLR 234
           LP       +LE L +     L+SLP +P                     + R
Sbjct: 175 LPELPE---SLEALDVSTN-LLESLPAVPVR--------NHHSEETEIFFRCR 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 35/229 (15%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           +  L + +  +  +P   EL + L  L     + L  LP       SLK L++       
Sbjct: 82  ITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE---LPASLKHLDVDN----- 129

Query: 64  NLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLP-FPI 121
           N L  +      LE ++     +   P       +L+ LS R           +LP  P 
Sbjct: 130 NQLTMLPELPALLEYINADNNQLTMLPELP---TSLEVLSVRNNQ------LTFLPELPE 180

Query: 122 NLMRRSSDLGALMLPSL-SGLGSLTK-------LDLSDCGLGEGAIPSDIGNLHSLKTLY 173
           +L   + D+   +L SL +                  +  +    IP +I +L    T+ 
Sbjct: 181 SL--EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTII 236

Query: 174 LSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCA 222
           L  N   +           +                   + +   +   
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 32/247 (12%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNL----- 56
           L+ L +   D+  +       L+ L QLTL+ C NL  +P+   + L  L  L L     
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 57  --LGCFKFENLLETVGQVESLEELDISGT-AIRCPPSSIFLMKNLKTLSFRGCN--GPPS 111
             +  + F+ L         L+ L+IS    +     +     NL +LS   CN    P 
Sbjct: 189 NAIRDYSFKRL-------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241

Query: 112 SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLK 170
            A  +L +   L    + +  +    L  L  L ++ L    L    +       L+ L+
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNYLR 299

Query: 171 TLYLSKNNFVTLPASI-NCLFNLEKLKLE------DCKRLQSLPQLPPNVEKVRVNG-CA 222
            L +S N   TL  S+ + + NLE L L+      DC RL  + +    +   R    CA
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC-RLLWVFRRRWRLNFNRQQPTCA 358

Query: 223 SLVTLLG 229
           +   + G
Sbjct: 359 TPEFVQG 365

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 21/216 (9%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
           LR L L    +K +PL +   LS L +L +   K +V L   +   L +LK+L +     
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEV----- 135

Query: 62  FENLLETVGQ-----VESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCN--GPPSSA 113
            +N L  +       + SLE+L +    +   P+     +  L  L  R  N       +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 114 SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTL 172
              L     L          M P+     +LT L ++ C L    +P   + +L  L+ L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFL 253

Query: 173 YLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
            LS N   T+  S+ + L  L++++L   + L  + 
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVE 288

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 106 CNGPPSSASCY------LP--FPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGL 154
           C+    +  C+      +P   P          + +  L     +    L +L+L++  +
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 155 GEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
               +      NL +L+TL L  N    +P  +   L NL KL + +  ++  L 
Sbjct: 69  SA--VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILL 120

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 28/137 (20%)

Query: 74  SLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGA 132
               LD+    I+      F    +L+ L                            + A
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----------------------VSA 70

Query: 133 LMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLF 190
           +   + + L +L  L L    L    IP  +   L +L  L +S+N  V L   +   L+
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 191 NLEKLKLEDCKRLQSLP 207
           NL+ L++ D   L  + 
Sbjct: 129 NLKSLEVGDN-DLVYIS 144

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 40/213 (18%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
            R L L +  I+ +   S + L  L  L L     +  +     N L +L TL L     
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLEL----- 119

Query: 62  FENLLETV-----GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASC 115
           F+N L T+       +  L+EL +    I   PS  F  + +L+ L              
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-------- 171

Query: 116 YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLS 175
                         L  +   +  GL +L  L+L+ C L E  IP ++  L  L  L LS
Sbjct: 172 -------------RLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLS 215

Query: 176 KNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP 207
            N+   +   S   L +L+KL +    ++Q + 
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 46/221 (20%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
           L  L L    +  +P      LS L +L L+    +  +PS   N + SL+ L+L     
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL-- 170

Query: 62  FENLLETVGQ-----VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY 116
               L  + +     + +L  L+++   +R  P+   L   L  L   G +         
Sbjct: 171 --KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL-IKLDELDLSGNH--------- 218

Query: 117 LPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLS 175
                        L A+   S  GL  L KL +    +    I  +   NL SL  + L+
Sbjct: 219 -------------LSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLA 263

Query: 176 KNNFVTLPASI-NCLFNLEKLKLE------DCKRLQSLPQL 209
            NN   LP  +   L +LE++ L       +C  +  L   
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC-DILWLSWW 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 27/138 (19%)

Query: 73  ESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLG 131
            +   L++    I+    + F  +++L+ L     +                      + 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----------------------IR 101

Query: 132 ALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCL 189
            + + + +GL +L  L+L D  L    IP+     L  LK L+L  N   ++P+   N +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 190 FNLEKLKLEDCKRLQSLP 207
            +L +L L + KRL  + 
Sbjct: 160 PSLRRLDLGELKRLSYIS 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 40/213 (18%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
            R L L + +I+ +   +   L  L  L L    ++ ++     N L SL TL L     
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLEL----- 130

Query: 62  FENLLETVGQ-----VESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASC 115
           F+N L  +       +  L EL +    I   PS  F  + +L  L              
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-------- 182

Query: 116 YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLS 175
                         L  +   +  GL +L  L+L  C + +  +P ++  L  L+ L +S
Sbjct: 183 -------------KLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMS 226

Query: 176 KNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP 207
            N+F  +   S + L +L+KL + +  ++  + 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 51/217 (23%), Positives = 79/217 (36%), Gaps = 38/217 (17%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
           L  L L    +  +P    E LS L +L L+    +  +PS   N + SL  L+L    K
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKK 183

Query: 62  FENL-LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            E +       + +L+ L++    I+  P+   L   L+ L   G +             
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL-VGLEELEMSGNH------------- 229

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNF 179
                       +   S  GL SL KL + +  +    I  +    L SL  L L+ NN 
Sbjct: 230 ---------FPEIRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNL 278

Query: 180 VTLPASI-NCLFNLEKLKLE------DCKRLQSLPQL 209
            +LP  +   L  L +L L       DC  +  L   
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWNCDC-DILWLAWW 314

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 27/138 (19%)

Query: 73  ESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLG 131
            +   L++    I+   +  F  + +L+ L     +                      + 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----------------------IR 112

Query: 132 ALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCL 189
            + + + +GL SL  L+L D  L    IPS     L  L+ L+L  N   ++P+   N +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 190 FNLEKLKLEDCKRLQSLP 207
            +L +L L + K+L+ + 
Sbjct: 171 PSLMRLDLGELKKLEYIS 188

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 43/225 (19%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 1   MECLRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNL-- 56
           ++ L+ L L    I ++       L  L  L L     L  L S+    L  +  ++L  
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQK 347

Query: 57  -----LGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPS 111
                +    F+ L       E L+ LD+   A+    ++I  + ++  +   G      
Sbjct: 348 NHIAIIQDQTFKFL-------EKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNK---L 393

Query: 112 SASCYLPFPINLMRRSSDL--GALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSL 169
                +    NL+  S +      +L  L  +  L  L L+       +         SL
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 170 KTLYLSKNNFVTLPAS------INCLFNLEKLKLEDCKRLQSLPQ 208
           + L+L +N       +         L +L+ L L     L SLP 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP 497

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           +  + L K  I  +     + L  L  L L+         + I+ + S+  + L G    
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGN--- 391

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFL--MKNLKTLSFRGCNGPPSSASCYLPFP 120
             L+       +   + +S   +       FL  + +L+ L          S        
Sbjct: 392 -KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 121 INLMR--------RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKT 171
            +L +        + +    L      GL  L  L L+   L    +P  +  +L +L+ 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS--LPPGVFSHLTALRG 508

Query: 172 LYLSKNNFVTLPASINCLFNLEKLKLED 199
           L L+ N    L  +     NLE L +  
Sbjct: 509 LSLNSNRLTVLSHNDL-PANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 31/208 (14%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L+ +      I    +    L  L   TL    +   L    NSL S  +++   C    
Sbjct: 150 LKSIDFSSNQIFL--VCEHELEPLQGKTL----SFFSL--AANSLYSRVSVDWGKCMNPF 201

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
             +        LE LD+SG       +  F             +   + +       +  
Sbjct: 202 RNM-------VLEILDVSGNGWTVDITGNF---------SNAISKSQAFSLILAHHIMGA 245

Query: 124 MRRSSDLGALMLPSLSGLG--SLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFV 180
                ++      + +GL   S+  LDLS   +    + S +   L  LK L L+ N   
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKIN 303

Query: 181 TLPASI-NCLFNLEKLKLEDCKRLQSLP 207
            +       L NL+ L L     L  L 
Sbjct: 304 KIADEAFYGLDNLQVLNLSYN-LLGELY 330

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 33/178 (18%)

Query: 36  KNLVRLPSNINSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDISGTAIRC--PPSSI 92
            NL ++P  +N   + + L L        +  +    +E L+ L++            + 
Sbjct: 14  CNLTQVPQVLN---TTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 93  FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDC 152
             + NL+ L                            +  L   +  GL  L +L L  C
Sbjct: 70  RNLPNLRILDLGSSK----------------------IYFLHPDAFQGLFHLFELRLYFC 107

Query: 153 GLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLEDCKRLQSLP 207
           GL +  +      NL +L  L LSKN   +L    S   L +L+ +     + +  + 
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVC 164

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 30/182 (16%)

Query: 22  ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLG-CFKFENLLETVGQVESLEELD 79
           ++L+   +L L     +  + ++    L+ L+ L L           E    + +L  LD
Sbjct: 21  QVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 80  ISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS- 137
           +  + I       F  + +L  L    C                       L   +L   
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCG----------------------LSDAVLKDG 117

Query: 138 -LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLK 196
               L +LT+LDLS   +    +    G L+SLK++  S N    +      L  L+   
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE--LEPLQGKT 175

Query: 197 LE 198
           L 
Sbjct: 176 LS 177

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 43/205 (20%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKF 62
           L  L L K  +KE+P   ++   L +L +     + ++  ++ N L  +  + L      
Sbjct: 102 LERLYLSKNQLKELP--EKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVEL-----G 153

Query: 63  ENLLETVG-------QVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASC 115
            N L++ G        ++ L  + I+ T I   P  +    +L  L   G          
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-------- 203

Query: 116 YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYL 174
                         +  +   SL GL +L KL LS   +    + +    N   L+ L+L
Sbjct: 204 --------------ITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHL 247

Query: 175 SKNNFVTLPASINCLFNLEKLKLED 199
           + N  V +P  +     ++ + L +
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 31/181 (17%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKF 62
           L  + +  T+I  +P    L   L +L L G K + ++ +     L +L  L L      
Sbjct: 173 LSYIRIADTNITTIPQG--LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSF---- 225

Query: 63  ENLLETVGQ-----VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYL 117
            N +  V          L EL ++   +   P  +   K ++ +                
Sbjct: 226 -NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN------------ 272

Query: 118 PFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSK 176
               N +              +   S + + L    +    I       ++    + L  
Sbjct: 273 ----NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 177 N 177
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 41/212 (19%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
              L L    I E+     + L  L  L L   K + ++       L  L+ L L     
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYL----- 107

Query: 62  FENLLETV--GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLP 118
            +N L+ +     ++L+EL +    I     S+F  +  +  +               L 
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV--------------EL- 152

Query: 119 FPINLMRRSSDLGALMLPS--LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSK 176
                   ++ L +  + +    G+  L+ + ++D  +    IP   G   SL  L+L  
Sbjct: 153 -------GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ--GLPPSLTELHLDG 201

Query: 177 NNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP 207
           N    + A S+  L NL KL L     + ++ 
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNS-ISAVD 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 43/212 (20%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKF 62
           L++L + K  + E+P    L S LV+L +   + + ++P  + + L+++  + +      
Sbjct: 104 LQKLYISKNHLVEIPP--NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEM-----G 155

Query: 63  ENLLETVG------QVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY 116
            N LE  G          L  L IS   +   P  +   + L  L               
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNK--------- 204

Query: 117 LPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLS 175
                        + A+ L  L     L +L L    +    I +     L +L+ L+L 
Sbjct: 205 -------------IQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLD 249

Query: 176 KNNFVTLPASINCLFNLEKLKLEDCKRLQSLP 207
            N    +PA +  L  L+ + L     +  + 
Sbjct: 250 NNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVG 280

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 31/181 (17%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKF 62
           L  L + +  +  +P   +L   L +L L   K +  +          L  L L      
Sbjct: 174 LNYLRISEAKLTGIPK--DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGH---- 226

Query: 63  ENLLETVGQ-----VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYL 117
            N +  +       + +L EL +    +   P+ +  +K L+ +                
Sbjct: 227 -NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT------------ 273

Query: 118 PFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSK 176
               N + +        +           + L +  +    +       +     +    
Sbjct: 274 ----NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 177 N 177
            
Sbjct: 330 Y 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 41/211 (19%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCFKF 62
           LR +      +K +P  I        L L+   ++  L  +    L+ L  L L+     
Sbjct: 35  LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVN---- 87

Query: 63  ENLLETVG-----QVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYL 117
            N +  +       +  L++L IS   +   P ++    +L  L                
Sbjct: 88  -NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR---------- 134

Query: 118 PFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKN 177
                       +  +     SGL ++  +++    L          +   L  L +S+ 
Sbjct: 135 ------------IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 178 NFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
               +P  +     L +L L+  K +Q++  
Sbjct: 183 KLTGIPKDL--PETLNELHLDHNK-IQAIEL 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 39/220 (17%)

Query: 6   ELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL 65
           E +   T IK++  S +  +  ++  LK  K  V      N L S+  +        ++ 
Sbjct: 6   ETITVPTPIKQIF-SDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNS-DIKS- 60

Query: 66  LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMR 125
           ++ +  + ++ +L ++G  +      +  +KNL  L                   +  + 
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENK-------------VKDLS 106

Query: 126 RSSDLGAL-----------MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYL 174
              DL  L            +  L  L  L  L L +  + +    + +  L  L TL L
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSL 163

Query: 175 SKNNFVTLPASINCLFNLEKLKLEDCK-----RLQSLPQL 209
             N    +   +  L  L+ L L          L  L  L
Sbjct: 164 EDNQISDIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNL 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 12/150 (8%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L+ L L+   I +    I  L  L QL  L    N +   + ++ L  L TL+L    + 
Sbjct: 114 LKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QI 168

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRG--CNGPPSSASCYLPFP 120
            + +  +  +  L+ L +S   I     ++  +KNL  L      C   P +    L  P
Sbjct: 169 SD-IVPLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLS 150
             +  +++D   +    +S  G   K ++ 
Sbjct: 227 NTV--KNTDGSLVTPEIISDDGDYEKPNVK 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 38/191 (19%)

Query: 24  LSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT 83
           L+  +++     K+ V        L  + TL+  G      + E V  + +L  L++   
Sbjct: 18  LANAIKIAAG--KSNVTDTVTQADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDN 73

Query: 84  AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGS 143
            I    + +  +  +  L   G               +             + +++GL S
Sbjct: 74  QITD-LAPLKNLTKITELELSGNP-------------LK-----------NVSAIAGLQS 108

Query: 144 LTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKL-----KLE 198
           +  LDL+   + +    + +  L +L+ LYL  N    +   +  L NL+ L     ++ 
Sbjct: 109 IKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS 164

Query: 199 DCKRLQSLPQL 209
           D   L +L +L
Sbjct: 165 DLTPLANLSKL 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 39/211 (18%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
             ++   K+++ +   +   L G+  L+  G   +  +   +  L +L  L L    +  
Sbjct: 21  AIKIAAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDN-QIT 76

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINL 123
           +L   +  +  + EL++SG  ++   S+I  ++++KTL                   I  
Sbjct: 77  DL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQ-------------IT- 120

Query: 124 MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
                      +  L+GL +L  L L    +    I S +  L +L+ L +       L 
Sbjct: 121 ----------DVTPLAGLSNLQVLYLDLNQITN--I-SPLAGLTNLQYLSIGNAQVSDLT 167

Query: 184 ASINCLFNLEKL-----KLEDCKRLQSLPQL 209
             +  L  L  L     K+ D   L SLP L
Sbjct: 168 P-LANLSKLTTLKADDNKISDISPLASLPNL 197

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 36/199 (18%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           L  L L    I      +  L  L ++T L+   N ++  S I  L+S+KTL+L      
Sbjct: 65  LIGLELKDNQIT----DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
           +  +  +  + +L+ L +    I    S +  + NL+ LS                  ++
Sbjct: 121 D--VTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQ-------------VS 164

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
                       L  L+ L  LT L   D  + +    S + +L +L  ++L  N    +
Sbjct: 165 -----------DLTPLANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDV 210

Query: 183 PASINCLFNLEKLKLEDCK 201
              +    NL  + L +  
Sbjct: 211 SP-LANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 35/185 (18%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           + EL L    +K    ++  ++GL  +  L      +   + +  L +L+ L L    + 
Sbjct: 87  ITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN-QI 141

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
            N+   +  + +L+ L I    +    + +  +  L TL                    N
Sbjct: 142 TNI-SPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADD----------------N 183

Query: 123 LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL 182
            +          +  L+ L +L ++ L +  + +    S + N  +L  + L+       
Sbjct: 184 KIS--------DISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQ 232

Query: 183 PASIN 187
           P   N
Sbjct: 233 PVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 36/172 (20%)

Query: 43  SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLS 102
               +L +   +        +    T   ++ +  L   GT +      +  + NL  L 
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLE 69

Query: 103 FRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD 162
            +                I      +DL       L  L  +T+L+LS   L      S 
Sbjct: 70  LKDNQ-------------I------TDL-----APLKNLTKITELELSGNPLKN---VSA 102

Query: 163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK-----RLQSLPQL 209
           I  L S+KTL L+      +   +  L NL+ L L+  +      L  L  L
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNL 153

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
             + + L  +T L     G+    I   +  L++L  L L  N    L   +  L  + +
Sbjct: 34  TVTQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITE 89

Query: 195 LKLEDCK--RLQSLPQLP 210
           L+L       + ++  L 
Sbjct: 90  LELSGNPLKNVSAIAGLQ 107

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 41/210 (19%)

Query: 6   ELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN 64
           E +   T I +    +    GL         K  V    +   L  ++  N       ++
Sbjct: 1   ESIQRPTPINQ----VFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQS 55

Query: 65  LLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLM 124
           L   +    +L+EL +S   I    S +  +  L+ LS                   N +
Sbjct: 56  L-AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNR----------------NRL 97

Query: 125 RRSSDLGALML-------------PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT 171
           +  + + +  L              SL  L +L  L + +  L        +G L  L+ 
Sbjct: 98  KNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS---IVMLGFLSKLEV 154

Query: 172 LYLSKNNFVTLPASINCLFNLEKLKLEDCK 201
           L L  N        +  L  +  + L   K
Sbjct: 155 LDLHGNEITNTG-GLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 35/205 (17%), Positives = 66/205 (32%), Gaps = 41/205 (20%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT-LKGCKNLVRLPSNINSLKSLKTLNLLGCFKF 62
           ++    D ++I+    S+  +     L  L    N +   S +  L  L+ L++      
Sbjct: 43  VQNFNGDNSNIQ----SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR---- 94

Query: 63  ENLLETVGQVE--SLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            N L+ +  +    L  L +    +R    S+  +KNL+ LS R                
Sbjct: 95  -NRLKNLNGIPSACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNK------------- 139

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
           +             +  L  L  L  LDL    +        +  L  +  + L+    V
Sbjct: 140 LK-----------SIVMLGFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQKCV 185

Query: 181 TLPASINC-LFNLEKLKLEDCKRLQ 204
             P      L+    +K  D + + 
Sbjct: 186 NEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
           +    GL +  K +L    + +         L  ++      +N  +L   +    NL++
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKE 67

Query: 195 LKLEDCK-----RLQSLPQL 209
           L L   +      L+ L +L
Sbjct: 68  LHLSHNQISDLSPLKDLTKL 87

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
           L  +    +L +L LS   + +    S + +L  L+ L +++N    L    +    L +
Sbjct: 56  LAGMQFFTNLKELHLSHNQISD---LSPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSR 110

Query: 195 L-----KLEDCKRLQSLPQL 209
           L     +L D   L  L  L
Sbjct: 111 LFLDNNELRDTDSLIHLKNL 130

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 50/227 (22%), Positives = 70/227 (30%), Gaps = 25/227 (11%)

Query: 4   LRELLLDKTDIKEMPLSIEL----LSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLL 57
           L+ L +    I    L   L    +SGL +LTL+  +     P  +   +   L  LNL 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 58  GCF--KFENLLETVGQV--ESLEELDISGTAIRC-PPSSIFLMKNLKTLSFRG----CNG 108
                  +  L  + Q     L+ L I+           + +   L TL           
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 109 PPSSASCYLPFP----INLMR-RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI 163
              SA C L FP    + L          +     +    L  LDLS   L + A     
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 164 GNLHSLKTLYLSKNNFVTLPASINCLF-NLEKLKLEDCKRLQSLPQL 209
                L +L LS      +P     L   L  L L    RL   P  
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYN-RLDRNPSP 292

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 47/214 (21%), Positives = 65/214 (30%), Gaps = 23/214 (10%)

Query: 4   LRELLLDK---TDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNIN----SLKSLKTLNL 56
           L+EL L+    T     PL       L  L L+      R              LK L++
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 57  LGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFL-----MKNLKTLSFRGCNGPPS 111
                     E V    +L  LD+S          I          L+ L+ R       
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 112 SASCYLPFPINLMRRSSDL------GALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGN 165
           S  C       +  +  DL       A   PS      L  L+LS  GL +  +P  +  
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL-- 272

Query: 166 LHSLKTLYLSKNNFVTLPASINCLFNLEKLKLED 199
              L  L LS N     P+    L  +  L L+ 
Sbjct: 273 PAKLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 38/190 (20%), Positives = 60/190 (31%), Gaps = 21/190 (11%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNL-----LG 58
           LR +     D     L   L  GL  L++    +L      +    +L TL+L     LG
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 59  CFKFENLLETVGQVESLEELDISGTAIR----CPPSSIFLMKNLKTLSFRGCN--GPPSS 112
                + L    +  +L+ L +    +        +       L+ L     +      +
Sbjct: 188 ERGLISALCP-LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 113 ASCYLPFPINLMRRSSDLGALMLPSLSG--LGSLTKLDLSDCGLGEGAIPSDIGNLHSLK 170
            SC  P    L   S +L    L  +       L+ LDLS   L           L  + 
Sbjct: 247 PSCDWP--SQL--NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN---PSPDELPQVG 299

Query: 171 TLYLSKNNFV 180
            L L  N F+
Sbjct: 300 NLSLKGNPFL 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 29/217 (13%)

Query: 4   LRELLLDKTDIKEMPLSI--ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCF 60
           L  L L     K +  +     L+ L  L +       ++       L  L+ L +    
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS- 184

Query: 61  KFENLLETV-GQVESLEELDISGTAIRCPPSSIF-LMKNLKTLSFRGCNGPPSSASCYLP 118
             ++        ++++  L +              +  +++ L  R              
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR-----------DTD 233

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
                    S+L      SL    +   + ++D  L +  +   +  +  L  L  S+N 
Sbjct: 234 LDTF---HFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQ 288

Query: 179 FVTLPASI-NCLFNLEKLKLE------DCKRLQSLPQ 208
             ++P  I + L +L+K+ L        C R+  L +
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 36/217 (16%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLLGCF 60
           L  L L    +  +  S  + LS L  L L G      L      + L  L+ L +    
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD 160

Query: 61  KFENLLETV-GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLP 118
            F  +       +  LEEL+I  + ++         ++N+  L                 
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ----------- 209

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS-------DIGNLHSLKT 171
                         L+   +    S+  L+L D  L               +    + + 
Sbjct: 210 -----------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 172 LYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ 208
           + ++  +   +   +N +  L +L+     +L+S+P 
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 138 LSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKL 195
           L    +L  L L+  G+    I  D   +L SL+ L LS N    L +S    L +L  L
Sbjct: 72  LQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129

Query: 196 KLEDCKRLQSLPQ 208
            L      ++L +
Sbjct: 130 NLLGNP-YKTLGE 141

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 42/221 (19%), Positives = 68/221 (30%), Gaps = 23/221 (10%)

Query: 27  LVQLTLKGCKN-------LVRLPSNINSLKSLKTLNLLGCFK--FENLLETVGQVESLEE 77
           +  L ++           L  L  +  SL+ L    +    K   ++L        SL  
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN-FYMTEFAKISPKDLETIARNCRSLVS 224

Query: 78  LDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCY--LPFPINLMRRS-SDLGALM 134
           + +    I           NL+       N        Y  L FP  L R   S +G   
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 135 LPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT---LPASINCLF 190
           +P L      + KLDL    L      + I    +L+ L     N +    L        
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCK 342

Query: 191 NLEKLKLEDCKRLQSLPQLPPNVEKVRV----NGCASLVTL 227
            L++L++E     Q +      V +  +     GC  L  +
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 41/254 (16%), Positives = 74/254 (29%), Gaps = 37/254 (14%)

Query: 3   CLRELLLDK---TDIKEMPLSIELLSGLVQLTLKGCKNL--VRLPSNINSLKSLKTLNLL 57
            L+ +   +   +D+    L+      L  L L  C       L S +   + +KTL + 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 58  GCFKFENLLETVGQV----ESLEELDISGT-------------AIRCPPSSIFLMKNLKT 100
                E   + + ++     SLE L+   T             A  C         +L +
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR--------SLVS 224

Query: 101 LSFRGCNGPPSSASC-YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDC-GLGEGA 158
           +                          S +    M      L    KL       +G   
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 159 IPSDIGNLHSLKTLYLSKNNFVT--LPASINCLFNLEKLKLEDC---KRLQSLPQLPPNV 213
           +P        ++ L L      T      I    NLE L+  +    + L+ L Q    +
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 214 EKVRVNGCASLVTL 227
           +++R+   A    +
Sbjct: 345 KRLRIERGADEQGM 358

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 37/261 (14%), Positives = 75/261 (28%), Gaps = 45/261 (17%)

Query: 21  IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVE------- 73
           I+    L  L  +       L       K LK L +      + + +  G V        
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 74  -----SLEELDISGTAIRCPPSSIFLM----KNLKTLSFRGCNGPPSSASCYLPFPI--- 121
                 LE + +  + I     S+  +    KNL        +         L   +   
Sbjct: 374 AQGCQELEYMAVYVSDIT--NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431

Query: 122 ----------NLMRRS---SDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS 168
                         R    +DLG   +       ++  + L   G  +  +        +
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489

Query: 169 LKTLYLSKNNF--VTLPASINCLFNLEKLKLEDCK------RLQSLPQLPPNVEKVRVNG 220
           L+ L +    F    + A++  L +L  L ++  +       L  + +   N+E +    
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

Query: 221 CASLVTLLGALKLRKSSCTII 241
               V   G ++  +    I+
Sbjct: 550 V-PEVNQQGEIREMEHPAHIL 569

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 35/215 (16%), Positives = 77/215 (35%), Gaps = 13/215 (6%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
             EL    T ++ +   +      L ++ +     L  + +++ ++L  L  + +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 62  FENLLETV-GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCN---GPPSSASCY 116
              +       + +L+ L IS T I+  P    +       L  +          ++   
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 117 LPFPINLMR-RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYL 174
           L F   ++    + +  +   + +G          +  L E  +P+D+         L +
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDI 209

Query: 175 SKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209
           S+    +LP+    L NL+KL+      L+ LP L
Sbjct: 210 SRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 27/138 (19%)

Query: 74  SLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGA 132
           +  EL    T +R      F    +L+ +                    N +    +   
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ----------------NDVLEVIEADV 74

Query: 133 LMLPSLSGLGSLTKLDLSDC-GLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASINC-L 189
                 S L  L ++ +     L    I  +   NL +L+ L +S      LP       
Sbjct: 75  F-----SNLPKLHEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 190 FNLEKLKLEDCKRLQSLP 207
                L ++D   + ++ 
Sbjct: 128 LQKVLLDIQDNINIHTIE 145

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 45/263 (17%), Positives = 90/263 (34%), Gaps = 36/263 (13%)

Query: 3   CLRELLLDKTDIKEMPLSI-----ELLSGLVQLTLKGCKNLVR---LPSNINSLKSLKTL 54
            L+EL L ++D+ ++         +  + LV L +    + V    L   +    +LK+L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 55  NLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSAS 114
            L      E L   + +   LEEL   G            + +  +++  GC      + 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGG----YTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 115 CYLPFPINLMRRSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLY 173
                         D     LP++ S    LT L+LS   +    +   +     L+ L+
Sbjct: 273 F------------WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320

Query: 174 LSKN-NFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVR--VNGCASLVTLLGA 230
           +        L    +   +L +L++   +     P +    + +     GC  L ++L  
Sbjct: 321 VLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL-- 378

Query: 231 LKLRKSSCTIIDFVDSLKLLGKN 253
                  C  +    +L  + +N
Sbjct: 379 -----YFCRQMT-NAALITIARN 395

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 17/171 (9%)

Query: 77  ELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP 136
           ++ I       P + I     ++++  +G                        +   +  
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV-------PDGWGGYVYPWIEA 99

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT---LPASINCLFNLE 193
             S    L ++ L    + +  +     +  + K L LS     +   L A      NL+
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159

Query: 194 KLKLEDCKR-------LQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSS 237
           +L L +          L   P    ++  + ++  AS V+     +L    
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 35/251 (13%), Positives = 67/251 (26%), Gaps = 49/251 (19%)

Query: 30  LTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPP 89
           + +  C   V   + I     ++++ L G   F +               I   +     
Sbjct: 48  VFIGNC-YAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT- 105

Query: 90  SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDL 149
                   L+ +  +                       +D    ++       +   L L
Sbjct: 106 -------WLEEIRLKRM-------------------VVTDDCLELI--AKSFKNFKVLVL 137

Query: 150 SDC-GLGEGAIPSDIGNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKR- 202
           S C G     + +      +LK L L +++        L    +   +L  L +      
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 203 -----LQSLPQLPPNVEKVRVNGCASLVTLLGALK-------LRKSSCTIIDFVDSLKLL 250
                L+ L    PN++ +++N    L  L   L+       L     T     D    L
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 251 GKNGLAISMLR 261
                    LR
Sbjct: 258 SVALSGCKELR 268

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 45/241 (18%), Positives = 72/241 (29%), Gaps = 43/241 (17%)

Query: 24  LSGLVQLTLKGCK-NLVRLPSNINSLKSLKTLNLLGCFKF-ENLLETVGQV-ESLEELDI 80
            + L ++ LK        L     S K+ K L L  C  F  + L  +     +L+ELD+
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 81  SGTAIRCPPSSIF-----LMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML 135
             + +                +L +L+        S                S L  L  
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS---------------FSALERL-- 206

Query: 136 PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKL 195
             ++   +L  L L+     E  + + +     L+ L          P   + L      
Sbjct: 207 --VTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA--- 260

Query: 196 KLEDCKRLQSL---PQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGK 252
            L  CK L+ L       P       + C+ L T    L L  S  T+      L  L  
Sbjct: 261 -LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT----LNL--SYATVQS--YDLVKLLC 311

Query: 253 N 253
            
Sbjct: 312 Q 312

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 42/217 (19%)

Query: 22  ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVG----------- 70
            +L    Q+T      + R      +  ++    L           T+            
Sbjct: 376 SVLYFCRQMTNAALITIAR------NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 71  QVESLEELDISGTAIRCPPSSI-FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSD 129
             + L  L +SG         I    K ++ LS                         SD
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-------------------DSD 470

Query: 130 LGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCL 189
           LG   +  LSG  SL KL++ DC  G+ A+ ++   L ++++L++S  + V+  A     
Sbjct: 471 LGMHHV--LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGACKLLG 527

Query: 190 FNLEKLKLEDCKRLQSLPQLPPNVEKV-RVNGCASLV 225
             + KL +E     +  P   P    V RV    ++ 
Sbjct: 528 QKMPKLNVE-VIDERGAPDSRPESCPVERVFIYRTVA 563

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 45/235 (19%)

Query: 27  LVQLTLKGCKNLVR-LPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG--- 82
           +  + L      V  L   ++    L+ L+L G    + ++ T+ +  +L  L++SG   
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 83  ---TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLS 139
               A++   SS      L  L+   C                     ++    +  +  
Sbjct: 155 FSEFALQTLLSS---CSRLDELNLSWCF------------------DFTEKHVQVAVA-H 192

Query: 140 GLGSLTKLDLSDC--GLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLF---NLEK 194
              ++T+L+LS     L +  + + +    +L  L LS +  +         F    L+ 
Sbjct: 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-NDCFQEFFQLNYLQH 251

Query: 195 LKLEDCKRL--QSLPQLP--PNVEKVRVNGC------ASLVTLLGALKLRKSSCT 239
           L L  C  +  ++L +L   P ++ ++V G         L   L  L++  S  T
Sbjct: 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 99  KTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158
           +TL   G N  P      L   +   R         L        +  +DLS+  +    
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 159 IPSDIGNLHSLKTLYLSKNNF--VTLPASINCLFNLEKLKLEDCKR-----LQSLPQLPP 211
           +   +     L+ L L         +        NL +L L  C       LQ+L     
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCS 168

Query: 212 NVEKVRVNGCASL 224
            ++++ ++ C   
Sbjct: 169 RLDELNLSWCFDF 181

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 53/246 (21%), Positives = 84/246 (34%), Gaps = 53/246 (21%)

Query: 4   LRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
           L  L L    +  +  +    L+ L QL L     L  +     + L  L TL+L     
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL----- 112

Query: 62  FENLLETV-----GQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNGPPSSASC 115
               L+ +       + +L+ L +   A++  P   F  + NL  L   G          
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG---------- 162

Query: 116 YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYL 174
                 N       + ++   +  GL SL +L L    +    +      +L  L TLYL
Sbjct: 163 ------NR------ISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYL 208

Query: 175 SKNNFVTLPASI-NCLFNLEKLKLE------DCKRLQSLP----QLPPNVEKVRVNGCAS 223
             NN   LP      L  L+ L+L       DC R + L     +   +  +V    C+ 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVP---CSL 264

Query: 224 LVTLLG 229
              L G
Sbjct: 265 PQRLAG 270

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 33/189 (17%)

Query: 36  KNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQ-----VESLEELDISGTAIRCPPS 90
           + L  +P  I +  + + + L       N +  V         +L  L +    +    +
Sbjct: 21  QGLQAVPVGIPA--ASQRIFL-----HGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 91  SIFL-MKNLKTLSFRGCNGP----PSSASCYLPFPINLMRRSSDLGALMLPSL-----SG 140
           + F  +  L+ L     N        +    L     L   +  L    L  L      G
Sbjct: 74  AAFTGLALLEQLDLSD-NAQLRSVDPATFHGLG---RL--HTLHLDRCGLQELGPGLFRG 127

Query: 141 LGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLE 198
           L +L  L L D  L    +P D   +L +L  L+L  N   ++P      L +L++L L 
Sbjct: 128 LAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 199 DCKRLQSLP 207
              R+  + 
Sbjct: 186 QN-RVAHVH 193

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 36/233 (15%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLK--------SLKTLN 55
           ++    +   +      +     L+ +TL+  +   +    +            ++  L 
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 56  LLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIF-LMKNLKTLSFRGCNGPPSSAS 114
           +      E    +   ++SL    +          +++ +   +                
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI--------- 338

Query: 115 CYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYL 174
                        SD   + +       S T L+ +     + ++      L  L+TL L
Sbjct: 339 -------------SDTPFIHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLIL 384

Query: 175 SKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTL 227
            +N             N+  L+  D     SL  L  +          S++ L
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDV----SLNSLNSHAYDRTCAWAESILVL 433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 29/167 (17%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 46  NSLKSLKTLNLLGCFKFENLLETV-GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFR 104
            S  S   LN      F + +      ++ L+ L +    ++       + KN+ +L   
Sbjct: 350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 105 GCNG---PPSSASCYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158
             +       +      +  +++     S+ L   +   L     +  LDL +  +   +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM--S 464

Query: 159 IPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLE----DC 200
           IP D+ +L +L+ L ++ N   ++P  + + L +L+ + L     DC
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLE 198
              L  LD+S   L    I      + SL+ L LS N+F  LP       L  L  L L 
Sbjct: 99  NQDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL- 153

Query: 199 DCKRLQSLP 207
              + + L 
Sbjct: 154 SAAKFRQLD 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 32/201 (15%)

Query: 12  TDIKEMPLSIELLSGLVQLTLK------GCKNLVRLPSNINSLKSLKTLNLLGCFKFENL 65
           T IK+     E    +V    +          + ++ + +++LK+ K L  L     E  
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA-LSTNNIEK- 62

Query: 66  LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMR 125
           + ++  +E+L  L +    I+   +   +   L+ L                    N + 
Sbjct: 63  ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY----------------NQIA 106

Query: 126 RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS 185
                    L  +  L +L  L +S+  +        +  L  L+ L L+ N        
Sbjct: 107 S--------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

Query: 186 INCLFNLEKLKLEDCKRLQSL 206
            N         ++    L+ L
Sbjct: 159 NNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 134 MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLE 193
           M  +LS L +   L LS   + +  I S +  + +L+ L L +N    +         LE
Sbjct: 40  MDATLSTLKACKHLALSTNNIEK--I-SSLSGMENLRILSLGRNLIKKIENLDAVADTLE 96

Query: 194 KL-----KLEDCKRLQSLPQL 209
           +L     ++     ++ L  L
Sbjct: 97  ELWISYNQIASLSGIEKLVNL 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEK 194
           S      L  LDLS C +    I      +L  L TL L+ N   +L     + L +L+K
Sbjct: 47  SFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 195 LKLEDCKRLQSLP 207
           L   +   L SL 
Sbjct: 105 LVAVETN-LASLE 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 61/194 (31%)

Query: 24  LSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKFENLLETV-----GQVESLEE 77
              L  L L  C+ +  +      SL  L TL L       N ++++       + SL++
Sbjct: 51  FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLIL-----TGNPIQSLALGAFSGLSSLQK 104

Query: 78  LDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS 137
           L    T +    +                                               
Sbjct: 105 LVAVETNLASLENFPI-------------------------------------------- 120

Query: 138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLK 196
              L +L +L+++   +    +P    NL +L+ L LS N   ++  +    L  +  L 
Sbjct: 121 -GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 197 LE---DCKRLQSLP 207
           L        +  + 
Sbjct: 180 LSLDLSLNPMNFIQ 193

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLE 193
           L     L  L  LDLS   L   ++P     L +L  L +S N   +LP      L  L+
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 194 KLKLEDCKRLQSLP 207
           +L L+  + L++LP
Sbjct: 128 ELYLKGNE-LKTLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLK 196
           +L     LT+L+L    L    +  D G L  L TL LS N   +LP     L  L  L 
Sbjct: 50  TLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106

Query: 197 LEDCKRLQSLP 207
           +   + L SLP
Sbjct: 107 VSFNR-LTSLP 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 135 LPSL-SGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFN 191
           LP L   L +LT LD+S   L   ++P      L  L+ LYL  N   TLP  +      
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 192 LEKLKLEDCKRLQSLP 207
           LEKL L +   L  LP
Sbjct: 150 LEKLSLANNN-LTELP 164

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 64/207 (30%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
           L +L LD+ ++ ++ +   L   L  L L   + L  LP    +L +L  L++       
Sbjct: 57  LTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV-----SF 109

Query: 64  NLLETV-----GQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLP 118
           N L ++       +  L+EL + G  ++  P  +                          
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL------------------------- 144

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKN 177
                               +    L KL L++  L    +P+ +   L +L TL L +N
Sbjct: 145 --------------------TPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQEN 182

Query: 178 NFVTLPASINCLFNLEKLKLE----DC 200
           +  T+P        L    L      C
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 41/240 (17%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLT---LKGCKNLVRLPSNI--NSLKSLKTLNL-- 56
           L  L L + ++    LS      L  L    L+    + ++       +++    L+L  
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTF 163

Query: 57  --LGCFK---FENLLETVGQVESLEE---LDISGTAIRCPPSSIFL-MKNLKTLSFRG-- 105
             +         N       +  L      D++   +            ++ TL   G  
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 106 ---------CNGPPSSASCYLPFPINLMRRSS-------DLGALMLPSLSGLGSLTKLDL 149
                     +    +    L    +    SS       D        L     +   DL
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDL 282

Query: 150 SDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
           S   +    +   +  +   L+ L L++N    +  +    L +L KL L     L S+ 
Sbjct: 283 SKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSID 339

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKL 195
           S S L  L  L +     G     +    L SL  L L  N F+ L     N L NLE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 196 KLEDCKRLQSLPQLPPNV 213
            L  C  L     L  N 
Sbjct: 109 TLTQCN-LDGAV-LSGNF 124

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 39/224 (17%), Positives = 66/224 (29%), Gaps = 36/224 (16%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE 63
              L L    +K +      L             L+RL S      +   L    C    
Sbjct: 156 FHVLDLTFNKVKSICEED--LLNFQGKHFT----LLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 64  NLLETVGQVESLEELDISGTAIRCPPSSIFL----MKNLKTLSFRGCNGPPSSASC-YLP 118
                     S+  LD+SG   +   +  F        +++L         SS       
Sbjct: 210 KNT-------SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 119 FPINLMRRSSDLGAL-----------MLPS--LSGLGSLTKLDLSDCGLGEGAIPSDI-G 164
            P N   +  +   +            L     S    L +L L+   + +  I  +   
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFW 320

Query: 165 NLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLP 207
            L  L  L LS+N   ++ + +   L  LE L L     +++L 
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG 363

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 49/233 (21%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
              +  L L     KE     +     +  T      L    +  +S       +     
Sbjct: 211 NTSITTLDLSGNGFKESMA--KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF- 267

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFL-MKNLKTLS-------------FRGC 106
            F+ L  +      ++  D+S + I     S+F    +L+ L+             F G 
Sbjct: 268 TFKGLEAS-----GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 107 NGPPSSASCYLPFPINLMR---RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI 163
                          +L++     + LG++       L  L  LDLS   +   A+    
Sbjct: 323 T--------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR--ALGDQS 366

Query: 164 -GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLE------DCKRLQSLPQ 208
              L +LK L L  N   ++P  I + L +L+K+ L        C R+  L +
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEK 194
           + + L +L  L LS   L    I S+    + +L+ L LS N+  TL   + + L  LE 
Sbjct: 59  TPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116

Query: 195 LKLEDCKRLQSLP 207
           L L +   +  + 
Sbjct: 117 LLLYNNH-IVVVD 128

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 35/174 (20%), Positives = 52/174 (29%), Gaps = 41/174 (23%)

Query: 37  NLVRLPSNI--NSLKSLKTLNLLGCFKFENLLETV-----GQVESLEELDISGTAIRCPP 89
           NL RL +      L +L +L L       N L  +       V +L  LD+S   +    
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLL-----SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104

Query: 90  SSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLD 148
             +F  ++ L+ L     +                      +  +   +   +  L KL 
Sbjct: 105 EFLFSDLQALEVLLLYNNH----------------------IVVVDRNAFEDMAQLQKLY 142

Query: 149 LSDCGL---GEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLED 199
           LS   +       I  D   L  L  L LS N    LP     L  L       
Sbjct: 143 LSQNQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPA----SINCLFN 191
             S L +L  L L +  +    +  +   ++  L+ LYLS+N     P       N L  
Sbjct: 107 LFSDLQALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 192 LEKLKLEDCKRLQSLPQ 208
           L  L L    +L+ LP 
Sbjct: 165 LMLLDLSS-NKLKKLPL 180

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 16/188 (8%)

Query: 23  LLSGLVQLTLK--GCKNLVRLPSNI-NSLKSLKTLNLLGCFKFENLLETV-GQVESLEEL 78
           +      + +K         +     + +     L+        + +    G +  LE L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETL 353

Query: 79  DISGTAIRC--PPSSIFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML 135
            +    ++     + +   MK+L+ L     +           +  +L   S ++ + +L
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL--LSLNMSSNIL 411

Query: 136 PSL---SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFN 191
                      +  LDL    +   +IP  +  L +L+ L ++ N   ++P  I + L +
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 192 LEKLKLED 199
           L+K+ L  
Sbjct: 470 LQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 33/189 (17%)

Query: 50  SLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFL-MKNLKTLSFRGCNG 108
           S+  + L G   F +   +   +++L    +       P S I+    N+   +F     
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 109 PPSSASC--------YLPFPINLM--------RRSSDLGALML--------PSLSG---- 140
                 C        +L F  NL+           ++L  L+L          ++     
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLF-NLEKLKLED 199
           + SL +LD+S   +       D     SL +L +S N          CL   ++ L L  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHS 430

Query: 200 CKRLQSLPQ 208
            K ++S+P+
Sbjct: 431 NK-IKSIPK 438

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 41/198 (20%)

Query: 4   LRELLLDKTDIKEMPLS-------IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNL 56
              L     D +E  +S         +L  +  L     K    L        +LK+L +
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 57  LGCFKFENLLETVGQVE--SLEELDI----------SGTAIRCPPSSIFLMKNLKTLSFR 104
           +     ++++E +   +  +LE+L +              +  P  S     NLK L   
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 105 GCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG---AIPS 161
                                   ++   M      L  L  +D+S   L +     +  
Sbjct: 261 DA-------------------EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 162 DIGNLHSLKTLYLSKNNF 179
            +  +  LK + +  N  
Sbjct: 302 HVDKIKHLKFINMKYNYL 319

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEK 194
           + S    L ++DLS+  +    +  D    L SL +L L  N    LP S+   LF+L+ 
Sbjct: 51  AFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108

Query: 195 LKLEDCKRLQSLP 207
           L L    ++  L 
Sbjct: 109 LLLNA-NKINCLR 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 28/149 (18%)

Query: 37  NLVRLPSNINSLKSLKTLNLLGCF--KFENLLETVGQVESLEELDISGTAIRCPPSSIFL 94
            L+   +   +    + L+L G      ENL  T+ Q    + +D S   IR       L
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQ---FDAIDFSDNEIR-KLDGFPL 62

Query: 95  MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL 154
           ++ LKTL                    N + R  +     LP       LT+L L++  L
Sbjct: 63  LRRLKTLLVNN----------------NRICRIGEGLDQALP------DLTELILTNNSL 100

Query: 155 GEGAIPSDIGNLHSLKTLYLSKNNFVTLP 183
            E      + +L SL  L + +N      
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 73  ESLEELDISGTAIRCPPSSIFL--MKNLKTLSFRGCNGPPSSA---SCYLPFPINLMR-- 125
             ++ LDI    +     +  L  ++  + +    C    +     S  L     L    
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 126 -RSSDLGALMLPSLS-GLGS----LTKLDLSDCGLGE---GAIPSDIGNLHSLKTLYLSK 176
            RS++LG + +  +  GL +    + KL L +C L     G + S +  L +L+ L+LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 177 NNFVTLPASI------NCLFNLEKLKLEDCK 201
           N        +      +    LEKL+LE C 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 34/204 (16%)

Query: 29  QLTLKGCKNLVRLPSNINSLKSLKTLNL----LGCFKFENLLETVGQVESLEELDISGTA 84
            L   G + L     +      L+ L L    L     E L   +      +EL +S   
Sbjct: 124 LLGDAGLQLLCEGLLDPQC--RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 85  IRCPPSSIFLMK-------NLKTLSFRGCNGPPSSA---SCYLPFPINLMR------RSS 128
           I        L +        L+ L    C     +       +    +L        +  
Sbjct: 182 I-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 129 DLGALMLPS--LSGLGSLTKLDLSDCGLGE---GAIPSDIGNLHSLKTLYLSKNNF---- 179
           D+G   L    L     L  L + +CG+     G +   +    SLK L L+ N      
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 180 --VTLPASINCLFNLEKLKLEDCK 201
             +     +     LE L ++ C 
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCS 324

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 33/213 (15%)

Query: 4   LRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFK 61
            + L L +T ++ +P  +   L  + ++ +     L +L S+   +L  +  + +     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 62  FENL-LETVGQVESLEELDISGTAIRCPP--SSIFLMKNLKTLSFRGCNGPPSSASCYLP 118
              +  + + ++  L+ L I  T ++  P  + ++       L                 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL----------------- 135

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTK-LDLSDCGLGEGAIPSDIGNLHSLKTLYLSKN 177
                +  +  + ++ + +  GL + T  L L + G     +     N   L  +YL+KN
Sbjct: 136 ----EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLNKN 189

Query: 178 NFVT-LPASI--NCLFNLEKLKLEDCKRLQSLP 207
            ++T +              L +     + +LP
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP 221

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 137 SLSGLGSLTKLDLSD-CGLGEGAIPSDI-GNLHSLKTLYLSKNNFVT-LPASI-NCLFNL 192
           + S L +++++ +S    L +  + S    NL  +  + +     +T +       L  L
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQ--LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107

Query: 193 EKLKLEDCKRLQSLPQLP 210
           + L + +   L+  P L 
Sbjct: 108 KFLGIFNT-GLKMFPDLT 124

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 139 SGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLK 196
             L  L K++ S+  +    I          +  + L+ N    +   +   L +L+ L 
Sbjct: 54  KKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 197 LEDCKRLQSLP 207
           L   + +  + 
Sbjct: 112 LRSNR-ITCVG 121

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 4   LRELLLD--KTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
           +REL+LD  K++  ++         L  L+L     L+ + SN+  L  LK L L     
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRI 83

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFL--MKNLKTLSFRGC 106
           F  L     ++ +L  L++SG  ++   +   L  ++ LK+L    C
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
           + +L  L  L KL+LS+  +  G +      L +L  L LS N    + +++  L  LE 
Sbjct: 64  VSNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLEC 121

Query: 195 LK---LEDC----------KRLQSLPQL 209
           LK   L +C             + LPQL
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQL 149

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 26/125 (20%), Positives = 36/125 (28%), Gaps = 31/125 (24%)

Query: 83  TAIRC-------PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML 135
           + +RC           +   +NL  L                            L  L L
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQ---------------------HLQHLEL 49

Query: 136 PSLSGLGSLTKLDLSDCGLGEGAIPSDI-GNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
             L GLG L  L +   GL    +  D       L  L LS N   +L        +L++
Sbjct: 50  RDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

Query: 195 LKLED 199
           L L  
Sbjct: 108 LVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 2   ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCF 60
            C R+  LD          +     L +L ++  ++L  L    +  L  L+ L ++   
Sbjct: 14  RCTRDGALD------SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-- 65

Query: 61  KFENLLETVGQ-----VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRG 105
              + L  V          L  L++S  A+           +L+ L   G
Sbjct: 66  ---SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 45/175 (25%)

Query: 29  QLTLKGCKNL------VRLPSNINSLKSLKTLNLLGCFKFEN-----LLETVGQVESLEE 77
            L  +    +      + +     +   L+++      + EN       +T      L  
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHT 191

Query: 78  LDISGTAIRCPPSSIFL------MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLG 131
           + +    IR       L       + LK L  +                       + LG
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-------------F------THLG 232

Query: 132 ALML-PSLSGLGSLTKLDLSDCGLG-EGAIP-----SDIGNLHSLKTLYLSKNNF 179
           +  L  +L    +L +L L+DC L   GA       S + N+  L+TL L  N  
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEI 286

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 47/352 (13%), Positives = 91/352 (25%), Gaps = 97/352 (27%)

Query: 144 LTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN-----FVTLPASINCLFNLEKLKLE 198
           L+K ++    +        +     L    LSK       FV     IN  F +  +K E
Sbjct: 46  LSKEEIDHI-IMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 199 DCK--------------RLQSLPQL--PPNVEKVRVNGCASLVTLLGALKLRKSSCTIID 242
             +              RL +  Q+    NV   R+     L   L  L+LR +    + 
Sbjct: 102 -QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQAL--LELRPAK--NV- 153

Query: 243 FVDSLKLLGKNGLAISMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITV---T 299
            +D +   GK  +A+ +   +          F           W         + +    
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-----------W---------LNLKNCN 193

Query: 300 RPSYLCNMNQVVGYAACRVFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGS----- 354
            P  +  M Q            P  ++            H +   +      +       
Sbjct: 194 SPETVLEMLQ----KLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 355 --DHLW-------------LLYLPRQSYYCNV-----KWHFESNHFRLSFM-DEREK--- 390
              ++              +L   R     +        H   +H  ++   DE +    
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 391 ---HCPAGSGTGLKVKRCGFHPGYMHEV-EEFDETTKQWTRFTSYNLNEFHH 438
               C       L  +    +P  +  + E   +    W  +   N ++   
Sbjct: 309 KYLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.57
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.97
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.27

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=8.3e-24  Score=208.35  Aligned_cols=202  Identities=24%  Similarity=0.357  Sum_probs=170.3

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ++++.|+|+++.++.+|..++.+++|++|+|++|. +..+|..++++++|++|+|++|.. ..+|..++++++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence            57899999999999999999999999999999987 569999999999999999999864 4889999999999999999


Q ss_pred             Ccc-CCCCCccccC---------CCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEecc
Q 012027           82 GTA-IRCPPSSIFL---------MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLS  150 (472)
Q Consensus        82 ~~~-i~~lp~~i~~---------l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~  150 (472)
                      +|. +..+|..+..         +++|+.|++++|...                        .+|. +..+++|++|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCGGGGGCTTCCEEEEE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchHhhcCCCCCCEEEcc
Confidence            965 4578887765         999999999998632                        1232 6778889999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCCCccc
Q 012027          151 DCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVT  226 (472)
Q Consensus       151 ~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~  226 (472)
                      +|.+..  +|..++.+++|++|+|++|++. .+|..+..+++|+.|++++|..+..+|.-   .++|+.|++++|..+..
T Consensus       215 ~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          215 NSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             SSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            998863  7778888899999999998765 77888888999999999999888888752   36788899999888888


Q ss_pred             ccccc
Q 012027          227 LLGAL  231 (472)
Q Consensus       227 ~~~~~  231 (472)
                      +|...
T Consensus       293 iP~~l  297 (328)
T 4fcg_A          293 LPSLI  297 (328)
T ss_dssp             CCGGG
T ss_pred             ccHHH
Confidence            87654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.3e-22  Score=199.70  Aligned_cols=184  Identities=33%  Similarity=0.511  Sum_probs=138.7

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCC---------
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQ---------   71 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~---------   71 (472)
                      |++|++|+|++|.++.+|..++.+++|++|+|++|. +..+|..+.++++|++|++++|..++.+|..++.         
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            457788888888887788778888888888888875 5577777878888888888887777777776654         


Q ss_pred             CCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccC
Q 012027           72 VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD  151 (472)
Q Consensus        72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~  151 (472)
                      +++|++|++++|.+..+|..++++++|+.|++++|....                       ..+.+..+++|++|++++
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-----------------------l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-----------------------LGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----------------------CCGGGGGCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----------------------CchhhccCCCCCEEECcC
Confidence            788888888888888888778888888888888776321                       122366677788888888


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC
Q 012027          152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL  209 (472)
Q Consensus       152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l  209 (472)
                      |++. +.+|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|..++.+|+.
T Consensus       239 n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          239 CTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             Ccch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            7776 567777888888888888887654 77777888888888888888877777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=5.3e-22  Score=194.09  Aligned_cols=219  Identities=21%  Similarity=0.223  Sum_probs=168.9

Q ss_pred             CCccEEEeeCCCCe---eccccccCCcCCcEEEeec-CcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCE
Q 012027            2 ECLRELLLDKTDIK---EMPLSIELLSGLVQLTLKG-CKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEE   77 (472)
Q Consensus         2 ~~L~~L~L~~~~l~---~lp~si~~L~~L~~L~L~~-c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~   77 (472)
                      .++++|+|+++.+.   .+|..++.+++|++|+|++ +.....+|..+.++++|++|++++|...+.+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            46889999999988   5888899999999999995 6656688988999999999999998877788999999999999


Q ss_pred             EeeeCccCC-CCCccccCCCCCcEEEecCCCCCCCCCC--CCCC-cchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCC
Q 012027           78 LDISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSAS--CYLP-FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCG  153 (472)
Q Consensus        78 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~  153 (472)
                      |++++|.+. .+|..+..+++|++|++++|......+.  ..+. ....+....+.+.+.....+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999988 7888999999999999999875422222  2222 233344455555443334466666 8888888888


Q ss_pred             CCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027          154 LGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA  222 (472)
Q Consensus       154 l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~  222 (472)
                      +. +..|..++.+++|+.|+|++|.++..+..+..+++|+.|++++|.....+|..   .++|+.|+++++.
T Consensus       209 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          209 LE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            76 45777788888888888888888865556788888888888888766566642   2577888887774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=3.1e-21  Score=188.65  Aligned_cols=206  Identities=17%  Similarity=0.152  Sum_probs=167.7

Q ss_pred             CCCccEEEeeC-CCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDK-TDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~-~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +++|++|+|++ +.+. .+|..++.+++|++|+|++|.....+|..+.++++|++|++++|.....+|..++.+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            57899999995 8887 788889999999999999988656889889999999999999987776889999999999999


Q ss_pred             eeeCccCC-CCCccccCCC-CCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCC
Q 012027           79 DISGTAIR-CPPSSIFLMK-NLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL  154 (472)
Q Consensus        79 ~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l  154 (472)
                      ++++|.+. .+|..++.++ +|+.|++++|......+  ..... ...+....+.+.......+..+++|+.|++++|.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            99999998 8899999998 99999999987432222  11222 33344455555544334488899999999999988


Q ss_pred             CCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC
Q 012027          155 GEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL  209 (472)
Q Consensus       155 ~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l  209 (472)
                      . +.+|. +..+++|++|+|++|.++ .+|..+..+++|+.|++++|+....+|..
T Consensus       234 ~-~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          234 A-FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             C-CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             e-eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            6 34444 888999999999999998 88999999999999999999877677764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=1e-20  Score=206.97  Aligned_cols=225  Identities=21%  Similarity=0.217  Sum_probs=136.8

Q ss_pred             CccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            3 CLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         3 ~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      +|++|+|++|.+. .+|..++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|..++.+++|++|+++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS  522 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence            3444444444444 334444444444444444444333444444555555555555554444455555555555555555


Q ss_pred             CccCC-CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchh--------------------------------------
Q 012027           82 GTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN--------------------------------------  122 (472)
Q Consensus        82 ~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~--------------------------------------  122 (472)
                      +|.+. .+|..++.+++|+.|++++|......+...+.....                                      
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            55554 445555555555555555554221111111000000                                      


Q ss_pred             ----------hhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCC
Q 012027          123 ----------LMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFN  191 (472)
Q Consensus       123 ----------l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~  191 (472)
                                .....+...+...+.+..+++|+.|++++|+++ +.+|..++.+++|+.|+|++|.++ .+|..++.+++
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~  681 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG  681 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence                      000001122223344777899999999999997 789999999999999999999998 89999999999


Q ss_pred             cceeeccCccccccCCCC---CCCccEEEEccCCCccccc
Q 012027          192 LEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       192 L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~  228 (472)
                      |+.|+|++|+....+|..   .++|+.|+++++.--..+|
T Consensus       682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            999999999988888864   3578899998875444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=2.3e-20  Score=204.81  Aligned_cols=195  Identities=17%  Similarity=0.182  Sum_probs=153.2

Q ss_pred             CCCccEEEeeCCCCee------------------cccccc--CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCC
Q 012027            1 MECLRELLLDKTDIKE------------------MPLSIE--LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF   60 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~------------------lp~si~--~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~   60 (472)
                      |++|++|+|++|.|+.                  +|+.++  ++++|++|+|++|.....+|..+++|++|++|+|++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5789999999999998                  999988  99999999999999899999999999999999999997


Q ss_pred             -Cch-hhhhhhCCCC-------CCCEEeeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCC
Q 012027           61 -KFE-NLLETVGQVE-------SLEELDISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSD  129 (472)
Q Consensus        61 -~l~-~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (472)
                       ... .+|..+++++       +|++|++++|.+..+|.  .++++++|+.|++++|... .                  
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~------------------  587 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H------------------  587 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-B------------------
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-c------------------
Confidence             444 6888777665       99999999999999999  9999999999999998743 1                  


Q ss_pred             CCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCC-CCEEEcCCCCCccCCcccCCCCC--cceeeccCccccccC
Q 012027          130 LGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS-LKTLYLSKNNFVTLPASINCLFN--LEKLKLEDCKRLQSL  206 (472)
Q Consensus       130 ~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~-L~~L~Ls~n~~~~lp~~i~~l~~--L~~L~l~~c~~L~~l  206 (472)
                           +|.+..+++|+.|++++|.+.  .+|..+..+++ |+.|+|++|.++.+|..+..++.  |+.|++++|.....+
T Consensus       588 -----lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          588 -----LEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             -----CCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             -----chhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence                 334566666777777777664  36666666666 77777777777766666655543  777777776655555


Q ss_pred             CCCC--------CCccEEEEccC
Q 012027          207 PQLP--------PNVEKVRVNGC  221 (472)
Q Consensus       207 p~lp--------~~L~~L~~~~c  221 (472)
                      |.++        ++|+.|++++|
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSS
T ss_pred             ccchhhhccccCCCcCEEEccCC
Confidence            5444        25666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.3e-20  Score=180.48  Aligned_cols=217  Identities=23%  Similarity=0.274  Sum_probs=136.8

Q ss_pred             CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCcc---CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCE
Q 012027            2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRL---PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEE   77 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~l---p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~   77 (472)
                      ++|++|+|+++.++.+|.. ++.+++|++|+|++|. +..+   |..+..+++|++|++++|. +..+|..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence            4788889988888888875 5888899999998876 4433   5556678889999998865 4567777888889999


Q ss_pred             EeeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCC
Q 012027           78 LDISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDC  152 (472)
Q Consensus        78 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~  152 (472)
                      |++++|.+..++.  .+..+++|+.|++++|......+  ...+.....+....+.+.....|. +..+++|+.|++++|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            9999888887764  67888889999988886332111  112222222333333333212222 555666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCC----CCCCCccEEEEccC
Q 012027          153 GLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLP----QLPPNVEKVRVNGC  221 (472)
Q Consensus       153 ~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp----~lp~~L~~L~~~~c  221 (472)
                      .+. +..|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|......|    .+|++|+.|++.++
T Consensus       186 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          186 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            654 2335556666666666666666665543 45556666666666664433222    23345555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=1.2e-20  Score=202.24  Aligned_cols=217  Identities=15%  Similarity=0.193  Sum_probs=163.7

Q ss_pred             CCCccEEEeeCCCCee------------------cccccc--CCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCC
Q 012027            1 MECLRELLLDKTDIKE------------------MPLSIE--LLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF   60 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~------------------lp~si~--~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~   60 (472)
                      |++|++|+|++|.++.                  +|..++  ++++|++|+|++|.....+|..++++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            5789999999999998                  999999  99999999999999899999999999999999999998


Q ss_pred             -Cch-hhhhhhCCC------CCCCEEeeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCC-CCCCCcchhhhcccCC
Q 012027           61 -KFE-NLLETVGQV------ESLEELDISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSA-SCYLPFPINLMRRSSD  129 (472)
Q Consensus        61 -~l~-~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~l~~~~~~  129 (472)
                       ..+ .+|..++.+      ++|++|++++|.+..+|.  .++++++|+.|++++|......+ ...+.....+....+.
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence             555 799998887      999999999999999999  99999999999999997542222 1112222233444444


Q ss_pred             CCcCCCCC-CCCCCC-cCEEeccCCCCCCCCCCCCCCCCC--CCCEEEcCCCCCc-cCCcccC-------CCCCcceeec
Q 012027          130 LGALMLPS-LSGLGS-LTKLDLSDCGLGEGAIPSDIGNLH--SLKTLYLSKNNFV-TLPASIN-------CLFNLEKLKL  197 (472)
Q Consensus       130 ~~~~~l~~-l~~l~~-L~~L~L~~~~l~~~~lp~~l~~l~--~L~~L~Ls~n~~~-~lp~~i~-------~l~~L~~L~l  197 (472)
                      +.  .+|. +..+++ |+.|++++|.+.  .+|..++.++  +|+.|++++|.+. .+|..+.       .+++|+.|++
T Consensus       365 l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          365 IT--EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             EE--ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             cc--cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            44  2333 666777 777777777775  3777666544  7777777777776 4555666       6667777777


Q ss_pred             cCccccccCCC----CCCCccEEEEccCC
Q 012027          198 EDCKRLQSLPQ----LPPNVEKVRVNGCA  222 (472)
Q Consensus       198 ~~c~~L~~lp~----lp~~L~~L~~~~c~  222 (472)
                      ++|.. ..+|.    ..++|+.|++.++.
T Consensus       441 s~N~l-~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          441 SNNQI-SKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             CSSCC-CSCCTHHHHTTCCCSEEECCSSC
T ss_pred             cCCcc-CcCCHHHHccCCCCCEEECCCCC
Confidence            77653 34553    13567777777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=2.6e-19  Score=176.04  Aligned_cols=212  Identities=19%  Similarity=0.156  Sum_probs=127.3

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.|+.+++ .++.+++|++|+|++|......|..+..+++|++|++++|. +..+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence            467888888888887765 57888888888888877444447778888888888888865 445665543  56777777


Q ss_pred             eCccCCCCCc-cccCCCCCcEEEecCCCCCC----CCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027           81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPP----SSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG  155 (472)
Q Consensus        81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~  155 (472)
                      ++|.+..++. .+.++++|+.|++++|....    ......+.....+....+.+..  +|. ...++|+.|++++|.+.
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~-~~~~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ-GLPPSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCS-SCCTTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCc-cccccCCEEECCCCcCC
Confidence            7777765544 35666777777776665321    1111122222223333333221  222 11256666666666664


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027          156 EGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC  221 (472)
Q Consensus       156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c  221 (472)
                       +..|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|+ +..+|..   .++|+.|++.++
T Consensus       206 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          206 -KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             -EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred             -ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence             2334556666666666666666665443 56666666666666663 3344431   245666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=2e-19  Score=173.06  Aligned_cols=195  Identities=21%  Similarity=0.236  Sum_probs=144.0

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh-hhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL-LETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~   79 (472)
                      ++|++|+|+++.++.++. .++.+++|++|+|++|......|..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            467788888888887764 4777888888888877633333667777888888888887645555 66777788888888


Q ss_pred             eeCccCCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027           80 ISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      +++|.+..+ |..+.++++|+.|++++|....                      .....+..+++|+.|++++|.+..  
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~--  167 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA----------------------LPDDTFRDLGNLTHLFLHGNRISS--  167 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccc----------------------cCHhHhccCCCccEEECCCCcccc--
Confidence            888887766 4557778888888887775322                      112237788999999999999863  


Q ss_pred             CCC-CCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccC
Q 012027          159 IPS-DIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGC  221 (472)
Q Consensus       159 lp~-~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c  221 (472)
                      +|. .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.. ..++.    -.++|+.|++.++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-CcCCHHHcccCcccCEEeccCC
Confidence            554 588999999999999999865 78899999999999999854 33431    1246777777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=1.3e-19  Score=182.54  Aligned_cols=221  Identities=18%  Similarity=0.152  Sum_probs=146.8

Q ss_pred             CCCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L   78 (472)
                      |++|++|+|+++.++.+++ .++.+++|++|+|++|......|..+.++++|++|++++|. +..+|.. ++++++|++|
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEE
Confidence            4567777777777766654 56777777777777765333334456677777777777754 3345544 4667777777


Q ss_pred             eeeCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcch------------------------------------
Q 012027           79 DISGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI------------------------------------  121 (472)
Q Consensus        79 ~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~------------------------------------  121 (472)
                      ++++|.+..++ ..+..+++|+.|++++|..... +...++...                                    
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~  225 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  225 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence            77777776553 3466777777777777653221 111111110                                    


Q ss_pred             ----hhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeec
Q 012027          122 ----NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKL  197 (472)
Q Consensus       122 ----~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l  197 (472)
                          .+....+.+.  ..+.+..+++|++|++++|.+. +..|..+..+++|+.|+|++|.++.+|..+..+++|+.|++
T Consensus       226 ~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          226 VELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             SSCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred             ccccEEECCCCCCc--ccHHHcCCCCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence                1111112221  1234667889999999999986 45688899999999999999999999998999999999999


Q ss_pred             cCccccccCCCC---CCCccEEEEccCCCccccc
Q 012027          198 EDCKRLQSLPQL---PPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       198 ~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~  228 (472)
                      ++|+ +..+|..   .++|+.|++.+|. +..++
T Consensus       303 ~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~  334 (390)
T 3o6n_A          303 SHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK  334 (390)
T ss_dssp             CSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred             CCCc-ceecCccccccCcCCEEECCCCc-cceeC
Confidence            9995 4455532   2689999998875 44443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.2e-19  Score=198.55  Aligned_cols=220  Identities=22%  Similarity=0.197  Sum_probs=148.1

Q ss_pred             CCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.+. .+|..++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|..++.+++|++|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            45777777777776 56667777777888888777755577777777777888888777766677777777778888888


Q ss_pred             eCccCC-CCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCC
Q 012027           81 SGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        81 ~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  157 (472)
                      ++|.+. .+|..+.++++|+.|++++|......+  ...+.....+....+.+.+.....+..+++|+.|++++|.+. +
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g  552 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN-G  552 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE-S
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC-C
Confidence            887777 567777777888888887776443332  223333334455555555444444677777777777777554 2


Q ss_pred             CCC----------------------------------------------------------------------CCCCCCC
Q 012027          158 AIP----------------------------------------------------------------------SDIGNLH  167 (472)
Q Consensus       158 ~lp----------------------------------------------------------------------~~l~~l~  167 (472)
                      .+|                                                                      ..++.++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            333                                                                      2344456


Q ss_pred             CCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027          168 SLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA  222 (472)
Q Consensus       168 ~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~  222 (472)
                      +|+.|+|++|+++ .+|..++.++.|+.|+|++|.....+|.-   .++|+.|+++++.
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence            6777777777776 67777777777777777777766666642   2456677766654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=1.2e-19  Score=193.12  Aligned_cols=220  Identities=17%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             CCCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L   78 (472)
                      |++|++|+|++|.|..+++ .++.+++|++|+|++|......|..++++++|++|+|++|.. ..+|.. ++++++|++|
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEE
Confidence            4678888888888887764 688888888888888773333344567888888888888754 455544 5788888888


Q ss_pred             eeeCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcch------------------------------------
Q 012027           79 DISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPI------------------------------------  121 (472)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~------------------------------------  121 (472)
                      ++++|.+..++. .++.+++|+.|++++|..... +...++...                                    
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            888888886644 578888888888888763221 111111111                                    


Q ss_pred             ----hhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeec
Q 012027          122 ----NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKL  197 (472)
Q Consensus       122 ----~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l  197 (472)
                          .+....+.+..  .+.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|
T Consensus       232 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L  308 (597)
T 3oja_B          232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL  308 (597)
T ss_dssp             SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence                11112222222  244778899999999999997 56688899999999999999999999999999999999999


Q ss_pred             cCccccccCCCC---CCCccEEEEccCCCcccc
Q 012027          198 EDCKRLQSLPQL---PPNVEKVRVNGCASLVTL  227 (472)
Q Consensus       198 ~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~  227 (472)
                      ++|.. ..+|..   .++|+.|++++|. +..+
T Consensus       309 s~N~l-~~i~~~~~~l~~L~~L~L~~N~-l~~~  339 (597)
T 3oja_B          309 SHNHL-LHVERNQPQFDRLENLYLDHNS-IVTL  339 (597)
T ss_dssp             CSSCC-CCCGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred             CCCCC-CccCcccccCCCCCEEECCCCC-CCCc
Confidence            99864 355532   2688999998875 4443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=3.6e-19  Score=182.82  Aligned_cols=176  Identities=24%  Similarity=0.262  Sum_probs=115.0

Q ss_pred             CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|+|+.+ |..++++++|++|+|++|......|..+.++++|++|+|++|......+..++.+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            4688888888888876 455888888888888887643334467788888888888887644333455778888888888


Q ss_pred             eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      ++|.+..+|. .+.++++|+.|++++|..+...+..                     .+.++++|+.|++++|++.+  +
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------~~~~l~~L~~L~L~~n~l~~--~  211 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---------------------AFEGLFNLKYLNLGMCNIKD--M  211 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------TTTTCTTCCEEECTTSCCSS--C
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---------------------hccCCCCCCEEECCCCcccc--c
Confidence            8888887765 5778888888888887644432211                     14445555555555555532  3


Q ss_pred             CCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCcc
Q 012027          160 PSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       160 p~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~  201 (472)
                      | .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            3 245555555555555555533 3445555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=2e-19  Score=181.13  Aligned_cols=223  Identities=16%  Similarity=0.123  Sum_probs=168.8

Q ss_pred             CCCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +++|+.|+++++.++.+|.. +..+++|++|+|++|. +..++ ..+..+++|++|++++|......|..++++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46899999999999999987 5889999999999987 55555 478999999999999987666667779999999999


Q ss_pred             eeeCccCCCCCccc-cCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCC----------------
Q 012027           79 DISGTAIRCPPSSI-FLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLS----------------  139 (472)
Q Consensus        79 ~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~----------------  139 (472)
                      ++++|.+..+|..+ .++++|++|++++|......+  ...+.....+....+.+....+..+.                
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            99999999999875 889999999999997443222  22333333444444443332111111                


Q ss_pred             ---------------------CCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeec
Q 012027          140 ---------------------GLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKL  197 (472)
Q Consensus       140 ---------------------~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l  197 (472)
                                           ..++|+.|++++|.+.+  . ..++.+++|++|+|++|.+..+ |..+..+++|+.|++
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence                                 12356677777776653  2 4678899999999999999865 778999999999999


Q ss_pred             cCccccccCCC---CCCCccEEEEccCCCcccccc
Q 012027          198 EDCKRLQSLPQ---LPPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       198 ~~c~~L~~lp~---lp~~L~~L~~~~c~sL~~~~~  229 (472)
                      ++|+ +..+|.   -.++|+.|++++| .+..++.
T Consensus       280 ~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  312 (390)
T 3o6n_A          280 SNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER  312 (390)
T ss_dssp             CSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred             CCCc-CcccCcccCCCCCCCEEECCCC-cceecCc
Confidence            9985 444543   2468999999998 4555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=1e-19  Score=194.91  Aligned_cols=220  Identities=15%  Similarity=0.140  Sum_probs=123.4

Q ss_pred             CCCccEEEeeCCCCe-eccccccCCcCCcEEEeecCcCCCccCcccCCCCC-CCEEEccCCCCchhhhhhhCCCC--CCC
Q 012027            1 MECLRELLLDKTDIK-EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKS-LKTLNLLGCFKFENLLETVGQVE--SLE   76 (472)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~Ls~c~~l~~lp~~l~~l~--~L~   76 (472)
                      |++|++|+|++|.+. .+| .++.+++|++|++++|. +..+|..+..+++ |++|++++|... .+|..++.+.  +|+
T Consensus       329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS  405 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred             CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence            456777777777777 666 67777777777777765 4466666666766 777777765533 6666655544  666


Q ss_pred             EEeeeCccCC-CCCcccc-------CCCCCcEEEecCCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCC--CC----
Q 012027           77 ELDISGTAIR-CPPSSIF-------LMKNLKTLSFRGCNGPPSSASC---YLPFPINLMRRSSDLGALMLPS--LS----  139 (472)
Q Consensus        77 ~L~L~~~~i~-~lp~~i~-------~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~--l~----  139 (472)
                      +|++++|.+. .+|..+.       .+.+|+.|++++|... ..+..   .+.....+....+.+.  .+|.  +.    
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~  482 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENE  482 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTE
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccc
Confidence            6666666665 3445555       5556666666666533 11211   1222223333333333  1221  11    


Q ss_pred             ---CCCCcCEEeccCCCCCCCCCCCCCC--CCCCCCEEEcCCCCCccCCcccCCCCCcceeeccC------ccccccCCC
Q 012027          140 ---GLGSLTKLDLSDCGLGEGAIPSDIG--NLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLED------CKRLQSLPQ  208 (472)
Q Consensus       140 ---~l~~L~~L~L~~~~l~~~~lp~~l~--~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~------c~~L~~lp~  208 (472)
                         ++++|+.|++++|++.  .+|..+.  .+++|+.|+|++|.++.+|..+..+++|+.|++++      |...+.+|.
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             cccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence               1226666666666664  3666555  66666666666666666666666666666666643      333344442


Q ss_pred             C---CCCccEEEEccCCCcccccc
Q 012027          209 L---PPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       209 l---p~~L~~L~~~~c~sL~~~~~  229 (472)
                      -   .++|+.|++++|.- ..++.
T Consensus       561 ~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             HHhcCCCCCEEECCCCcC-CccCH
Confidence            1   24566666666543 44443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=8.4e-19  Score=172.61  Aligned_cols=104  Identities=22%  Similarity=0.209  Sum_probs=88.9

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.++.+++ .++.+++|++|++++|......|..+.++++|++|++++|. +..+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEEC
Confidence            578999999999998854 69999999999999987444447789999999999999975 557887765  89999999


Q ss_pred             eCccCCCCCcc-ccCCCCCcEEEecCCCC
Q 012027           81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNG  108 (472)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~  108 (472)
                      ++|.+..+|.. +.++++|+.|++++|..
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            99999988764 78899999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=5.8e-19  Score=165.40  Aligned_cols=198  Identities=16%  Similarity=0.220  Sum_probs=153.9

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEE
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEEL   78 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (472)
                      ++|++|+|++|+|+.+|+ .++.+++|++|++++|+.++.+|. .+.++++|++|++++|..+..+| ..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            468999999999998877 588999999999999876777775 67889999999999855566665 568889999999


Q ss_pred             eeeCccCCCCCccccCCCCCc---EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcC-EEeccCCCC
Q 012027           79 DISGTAIRCPPSSIFLMKNLK---TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLT-KLDLSDCGL  154 (472)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~L~---~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~-~L~L~~~~l  154 (472)
                      ++++|.++.+|. +..+++|+   .|++++|..+..                     .....+.++++|+ .|++++|.+
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~---------------------i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS---------------------IPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE---------------------ECTTTTTTTBSSEEEEECCSCCC
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhh---------------------cCcccccchhcceeEEEcCCCCC
Confidence            999999999887 78888887   999998832221                     0112277888999 999999988


Q ss_pred             CCCCCCCCCCCCCCCCEEEcCCCC-CccCCc-ccCCC-CCcceeeccCccccccCCC-CCCCccEEEEccCCCc
Q 012027          155 GEGAIPSDIGNLHSLKTLYLSKNN-FVTLPA-SINCL-FNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASL  224 (472)
Q Consensus       155 ~~~~lp~~l~~l~~L~~L~Ls~n~-~~~lp~-~i~~l-~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL  224 (472)
                      .  .+|......++|+.|+|++|. ++.+|. .+..+ ++|+.|++++|+ ++.+|. ..++|+.|++.++..|
T Consensus       169 ~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          169 T--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             C--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred             c--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence            6  377655444899999999994 988864 57788 999999999865 455654 3567888888877543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=178.60  Aligned_cols=174  Identities=26%  Similarity=0.336  Sum_probs=107.6

Q ss_pred             CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEE
Q 012027            2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEEL   78 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L   78 (472)
                      ++++.|+|++|+|+.++ ..++++++|++|+|++|. +..++ ..+.++++|++|+|++|.. ..+| ..+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcC-CeeCHhHhhccccCcee
Confidence            45778888888888765 457788888888888876 44444 5677788888888888644 3444 457778888888


Q ss_pred             eeeCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCC
Q 012027           79 DISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~  157 (472)
                      ++++|.+..+|. .+.++++|+.|++++|......+..                     .+.++++|+.|++++|++.+ 
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------------------AFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------TTTTCSSCCEEECTTSCCSS-
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc---------------------hhhcccccCeecCCCCcCcc-
Confidence            888888876654 5677888888888876544322211                     13444455555555554432 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCcc
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~  201 (472)
                       +|. +..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.
T Consensus       200 -~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          200 -IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             -CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             -ccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence             332 44445555555555555433 3344455555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=1.2e-18  Score=178.79  Aligned_cols=106  Identities=23%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             CCccEEEeeCCCCe-ec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh--hCCCCCCCE
Q 012027            2 ECLRELLLDKTDIK-EM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET--VGQVESLEE   77 (472)
Q Consensus         2 ~~L~~L~L~~~~l~-~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~--l~~l~~L~~   77 (472)
                      ++|++|+|++|.+. .+ +..++.+++|++|+|++|......|..+.++++|++|++++|...+.+|..  ++.+++|++
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  133 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM  133 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence            44555555555443 33 233555555555555555533333555666666666666666554444444  666777777


Q ss_pred             EeeeCccCCCC-Ccc-ccCCCCCcEEEecCCC
Q 012027           78 LDISGTAIRCP-PSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        78 L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~~~  107 (472)
                      |++++|.+..+ |.. +.++++|++|++++|.
T Consensus       134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             EECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             EECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            77777777655 433 6677777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=4e-19  Score=173.22  Aligned_cols=186  Identities=21%  Similarity=0.344  Sum_probs=152.6

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |++|++|+++++.++.++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            357999999999999987 58999999999999986 777777 8899999999999976 55565 5889999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..++. +..+++|+.|++++|....                        ++.+..+++|+.|++++|.+.+  ++
T Consensus       115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~~--~~  167 (308)
T 1h6u_A          115 TSTQITDVTP-LAGLSNLQVLYLDLNQITN------------------------ISPLAGLTNLQYLSIGNAQVSD--LT  167 (308)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             CCCCCCCchh-hcCCCCCCEEECCCCccCc------------------------CccccCCCCccEEEccCCcCCC--Ch
Confidence            9999998876 8999999999999986322                        2236778899999999998864  55


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccC
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGC  221 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c  221 (472)
                      . +..+++|+.|+|++|.++.++. +..+++|+.|++++|+. ..++.+  .++|+.|++.++
T Consensus       168 ~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          168 P-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEE
T ss_pred             h-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCC
Confidence            5 8899999999999999998885 88899999999999863 334322  246666666664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1.6e-18  Score=165.87  Aligned_cols=176  Identities=23%  Similarity=0.283  Sum_probs=136.4

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|+.|++.++.+..++. ++.+++|++|++++|. +..++ .+..+++|++|++++|......+..++.+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCcccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            3678889998888887764 8888999999998876 55555 5788889999999987655444555788889999999


Q ss_pred             eCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCC
Q 012027           81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      ++|.+..+|.. +..+++|+.|++++|....                       ..+. +..+++|+.|++++|++. +.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~-~~  172 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-----------------------LPKGVFDKLTNLTELDLSYNQLQ-SL  172 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCc-----------------------cCHHHhccCccCCEEECCCCCcC-cc
Confidence            99988877655 6788899999998885321                       1222 577888999999999886 34


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCcccc
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~L  203 (472)
                      .+..++.+++|+.|+|++|.++.+|.. +..+++|+.|++++|+..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            445578889999999999998877654 688899999999888643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.1e-18  Score=172.54  Aligned_cols=214  Identities=15%  Similarity=0.218  Sum_probs=149.9

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|++++|.++.++. +..+++|++|++++|. +..+| .+.++++|++|++++|. +..++. +..+++|++|++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNL  139 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEEC
Confidence            5789999999999998887 8899999999999885 66666 48889999999999875 444555 778888888888


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.....+..+..+++|+.|++++|..........++....+....+.+..  ++.+..+++|+.|++++|.+..  ++
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~--~~  215 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--IT  215 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc--cccccCCCccceeecccCCCCC--Cc
Confidence            8886555555588888888888888875443333333333344444443332  3336667778888888877753  33


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccCCCcccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGCASLVTL  227 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~sL~~~  227 (472)
                      . +..+++|+.|++++|.++.+|. +..+++|+.|++++|. +..++.+  .++|+.|++.+| .+..+
T Consensus       216 ~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~  280 (347)
T 4fmz_A          216 P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDI  280 (347)
T ss_dssp             G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred             h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCC-ccCCC
Confidence            3 6777788888888888777775 7777888888887774 3334322  357777777776 34433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=8.5e-19  Score=179.85  Aligned_cols=227  Identities=20%  Similarity=0.138  Sum_probs=167.1

Q ss_pred             CCCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcc--cCCCCCCCEEEccCCCCchhhhhh-hCCCCCCC
Q 012027            1 MECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSN--INSLKSLKTLNLLGCFKFENLLET-VGQVESLE   76 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~--i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~   76 (472)
                      |++|++|+|++|.+..+ |..++.+++|++|+|++|.....+|..  +..+++|++|++++|......|.. ++++++|+
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            57899999999999976 677999999999999999855555554  889999999999998876665765 88999999


Q ss_pred             EEeeeCccCCCC-CccccC----------------------------------CCCCcEEEecCCCCCCCCC--------
Q 012027           77 ELDISGTAIRCP-PSSIFL----------------------------------MKNLKTLSFRGCNGPPSSA--------  113 (472)
Q Consensus        77 ~L~L~~~~i~~l-p~~i~~----------------------------------l~~L~~L~L~~~~~~~~~~--------  113 (472)
                      +|++++|.+..+ |..+..                                  +++|+.|++++|......+        
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  237 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA  237 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence            999999998855 333433                                  3567777777774211000        


Q ss_pred             --------------------CCC-------------CCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027          114 --------------------SCY-------------LPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus       114 --------------------~~~-------------~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                                          ...             ......+....+.+.......+..+++|+.|++++|.+. +..|
T Consensus       238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~  316 (455)
T 3v47_A          238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD  316 (455)
T ss_dssp             TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECT
T ss_pred             ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccCh
Confidence                                000             001112233333444333334888999999999999996 4557


Q ss_pred             CCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCCCcccccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~~  229 (472)
                      ..++.+++|+.|+|++|.+..+ |..+..+++|+.|++++|......|..   .++|+.|++.++ .++.++.
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence            7899999999999999999866 567899999999999999765444432   368899999886 4555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=1.3e-18  Score=185.15  Aligned_cols=218  Identities=22%  Similarity=0.191  Sum_probs=135.0

Q ss_pred             CccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            3 CLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      +|++|+++++.+..+++. ++.+++|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            467777777777766554 6777777777777765 66777777777777777777776555556667777777777777


Q ss_pred             CccCC-CCCcc-ccCCCCCcEEEecCCCCCCC----CCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027           82 GTAIR-CPPSS-IFLMKNLKTLSFRGCNGPPS----SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG  155 (472)
Q Consensus        82 ~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~  155 (472)
                      +|.+. .+|.. +..+++|+.|++++|.....    .....++....+....+.+.......+..+++|+.|++++|.+.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            77665 45443 66777777777777653321    11222333333444444444333334666777777777777665


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCcc-CCcccCCCCCcceeeccCcccccc-CCC-----CCCCccEEEEccC
Q 012027          156 EGAIPSDIGNLHSLKTLYLSKNNFVT-LPASINCLFNLEKLKLEDCKRLQS-LPQ-----LPPNVEKVRVNGC  221 (472)
Q Consensus       156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~-lp~~i~~l~~L~~L~l~~c~~L~~-lp~-----lp~~L~~L~~~~c  221 (472)
                      ....+..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|+.... ++.     -.++|+.|++++|
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence            32223346677777777777777764 345566777777777777654321 111     1246667777666

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=1.7e-19  Score=179.16  Aligned_cols=176  Identities=19%  Similarity=0.241  Sum_probs=121.7

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEE
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEEL   78 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L   78 (472)
                      ++|++|+|++|.++.+|. .++.+++|++|++++|. +..+ |..+.++++|++|++++|... .+|. .++++++|++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence            478899999999988876 68889999999999886 4444 566888899999999987544 4554 48889999999


Q ss_pred             eeeCccCCCCCc--cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           79 DISGTAIRCPPS--SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      ++++|.+..+|.  .+.++++|+.|++++|......                     ....+..+++|++|++++|.+. 
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---------------------~~~~~~~l~~L~~L~l~~n~l~-  187 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI---------------------QRKDFAGLTFLEELEIDASDLQ-  187 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------CTTTTTTCCEEEEEEEEETTCC-
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCcccccc---------------------CHHHccCCCCCCEEECCCCCcC-
Confidence            999999888886  6788999999999888532211                     1112455556666666666554 


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCcc
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCK  201 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~  201 (472)
                      +..|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence            334555666666666666666655555432 235556666655554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=7e-19  Score=168.48  Aligned_cols=180  Identities=26%  Similarity=0.279  Sum_probs=109.2

Q ss_pred             CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +|++|+|++|.++.++. .++.+++|++|++++|. +..++ ..+.++++|++|++++|......+..+.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46667777766666654 46666777777776664 34443 35666667777777766544444456666677777777


Q ss_pred             eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCC
Q 012027           81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      ++|.+..++. .+..+++|+.|++++|....                      ..+|. +..+++|+.|++++|.+.. .
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~l~~~~~~l~~L~~L~Ls~N~l~~-~  164 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQS----------------------FKLPEYFSNLTNLEHLDLSSNKIQS-I  164 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----------------------CCCCGGGGGCTTCCEEECCSSCCCE-E
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccce----------------------ecCchhhccCCCCCEEECCCCCCCc-C
Confidence            7766665544 46666677777766665221                      11222 5566677777777776642 2


Q ss_pred             CCCCCCCCCCCC----EEEcCCCCCccCCcccCCCCCcceeeccCccccccCC
Q 012027          159 IPSDIGNLHSLK----TLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP  207 (472)
Q Consensus       159 lp~~l~~l~~L~----~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp  207 (472)
                      .+..+..+++|+    .|++++|.++.+|..+....+|+.|++++|. ++.+|
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~  216 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVP  216 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCC
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecC
Confidence            233455455555    6777777777666665555677777777765 33443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=5.5e-19  Score=187.99  Aligned_cols=215  Identities=20%  Similarity=0.178  Sum_probs=127.3

Q ss_pred             CCCccEEEeeCCC-CeeccccccCCcCCcEEEeecCcCCCcc---CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCC
Q 012027            1 MECLRELLLDKTD-IKEMPLSIELLSGLVQLTLKGCKNLVRL---PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLE   76 (472)
Q Consensus         1 l~~L~~L~L~~~~-l~~lp~si~~L~~L~~L~L~~c~~l~~l---p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~   76 (472)
                      +++|++|++++|. +..+  .++.+++|++|++++|. +..+   |..+..+++|++|++++|. +..+|..+..+++|+
T Consensus       327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~  402 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQ  402 (606)
T ss_dssp             CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCC
T ss_pred             CCccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCC
Confidence            4677788887773 3333  36677778888887765 3333   5666777778888877765 455667777777777


Q ss_pred             EEeeeCccCCCCC--ccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccC
Q 012027           77 ELDISGTAIRCPP--SSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSD  151 (472)
Q Consensus        77 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~  151 (472)
                      +|++++|.+..++  ..+..+++|+.|++++|......+  ...+.....+....+.+....+|. +..+++|+.|++++
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence            8877777777554  366777777777777776332111  111122222222233232222232 55666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccC
Q 012027          152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGC  221 (472)
Q Consensus       152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c  221 (472)
                      |.+. +..|..++.+++|+.|+|++|+++.+ |..+..+++|+.|++++|+ ++.+|.    +|.+|+.|++.++
T Consensus       483 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          483 CQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             SCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred             CcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence            6664 34455566666666666666666644 5566666666666666664 334443    3334555555553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=4.6e-18  Score=168.08  Aligned_cols=213  Identities=15%  Similarity=0.223  Sum_probs=166.8

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|++.++.+..++. ++.+++|++|++++|. +..+|. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus        43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred             cccccEEEEeCCccccchh-hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence            4689999999999998876 8999999999999985 777777 8899999999999984 45555 5899999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCC-CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA-SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      ++|.+..++. +..+++|+.|++++|......+ ...+.....+....+...  ..+.+..+++|+.|++++|.+.+  +
T Consensus       118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~--~  192 (347)
T 4fmz_A          118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK--DVTPIANLTDLYSLSLNYNQIED--I  192 (347)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECTTSCCCC--C
T ss_pred             cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC--CchhhccCCCCCEEEccCCcccc--c
Confidence            9999998887 8899999999999996444322 222333333333433333  23337788999999999999864  5


Q ss_pred             CCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC--CCCCccEEEEccCCCcccc
Q 012027          160 PSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ--LPPNVEKVRVNGCASLVTL  227 (472)
Q Consensus       160 p~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~--lp~~L~~L~~~~c~sL~~~  227 (472)
                      +. +..+++|+.|++++|.+..++. +..+++|+.|++++|.. ..++.  -.++|+.|++.+| .+..+
T Consensus       193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n-~l~~~  258 (347)
T 4fmz_A          193 SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTN-QISDI  258 (347)
T ss_dssp             GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred             cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCC-ccCCC
Confidence            54 8889999999999999998876 88999999999999863 33432  2368999999887 34443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=4.6e-18  Score=164.24  Aligned_cols=193  Identities=24%  Similarity=0.246  Sum_probs=156.5

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|+++++.++.++.+|..+.  ++|+.|+|++|......|..+..+++|++|++++|. +..++.. +.+++|++|++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence            5789999999999999998764  799999999988544456779999999999999976 5556554 78999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..+|..+..+++|+.|++++|.....                      ....+.++++|+.|++++|.+.. ..+
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l----------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~  141 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSL----------------------PLGALRGLGELQELYLKGNELKT-LPP  141 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCC----------------------CSSTTTTCTTCCEEECTTSCCCC-CCT
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCccc----------------------CHHHHcCCCCCCEEECCCCCCCc-cCh
Confidence            9999999999999999999999999873321                      11237889999999999999963 334


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCccccccCCCCC---CCccEEEEccC
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQSLPQLP---PNVEKVRVNGC  221 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~~L~~lp~lp---~~L~~L~~~~c  221 (472)
                      ..+..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+ ++.+|.-.   .+|+.|++.+.
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred             hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence            45789999999999999999998764 789999999999986 45565421   35666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=177.80  Aligned_cols=199  Identities=20%  Similarity=0.193  Sum_probs=133.0

Q ss_pred             CCCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +++|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|. .+.++++|++|+|++|......|..+..+++|++|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            57899999999999977 6678999999999999976 667765 46889999999999988777677888899999999


Q ss_pred             eeeCccCCCC-CccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027           79 DISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG  155 (472)
Q Consensus        79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~  155 (472)
                      ++++|.+..+ |..+..+++|+.|++++|.......  ...+.....+....+.+.......+..+++|+.|++++|+..
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence            9999988855 5578888999999998886432211  122233333444444444333333566666666666665543


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCcc
Q 012027          156 EGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCK  201 (472)
Q Consensus       156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~  201 (472)
                       +.+|..+....+|+.|+|++|.++.+|. .+..+++|+.|++++|.
T Consensus       214 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          214 -DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             -CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             -cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence             2344444334455555555555555542 34455555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=6.4e-18  Score=162.53  Aligned_cols=197  Identities=20%  Similarity=0.281  Sum_probs=159.8

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      +.++.+++.++.+|..+  .++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            57888889999999644  6799999999987 55565 56899999999999998765555888999999999999999


Q ss_pred             c-CCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           84 A-IRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        84 ~-i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      . +..+ |..+..+++|+.|++++|.....                      ....+..+++|++|++++|.+.. ..+.
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~-~~~~  147 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL----------------------GPGLFRGLAALQYLYLQDNALQA-LPDD  147 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEE----------------------CHhHhhCCcCCCEEECCCCcccc-cCHh
Confidence            7 8877 67889999999999999873321                      12237789999999999999963 3345


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCCCccccc
Q 012027          162 DIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~  228 (472)
                      .++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|......|..   .++|+.|++.++ .+..++
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  217 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALP  217 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCC
Confidence            58999999999999999998886 4899999999999999755443432   258999999887 344433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=4.1e-18  Score=176.01  Aligned_cols=218  Identities=22%  Similarity=0.174  Sum_probs=153.0

Q ss_pred             CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~   79 (472)
                      ++|++|+|++|.|+.++ ..|..+++|++|+|++|......|..+.++++|++|+|++|. +..+| ..+.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence            46788888888888774 468888888888888876444447778888888888888865 44454 4567888888888


Q ss_pred             eeCccCCCC-CccccCCCCCcEEEecCCCCCCC--CCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           80 ISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPS--SASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      +++|.+..+ |..+.++++|+.|++++|.....  ..+..+.....+....+.+.......+..+++|+.|++++|.+. 
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-
Confidence            888888854 56778888888888888763321  12233334444555555544322222777888888888888875 


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCC
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCA  222 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~  222 (472)
                      +..+..+..+++|+.|++++|.+. .+|..+....+|+.|++++|. +..+|.    -.++|+.|+++++.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc
Confidence            344556888888888888887654 677777677788888888874 445551    23577888877663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.5e-18  Score=184.53  Aligned_cols=223  Identities=16%  Similarity=0.132  Sum_probs=167.9

Q ss_pred             CCCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +.+++.|++.++.+..+|+. ++.+++|++|+|++|. +..+| ..+..+++|++|+|++|......|..++++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            36789999999999999886 6889999999999987 55554 589999999999999988666566778999999999


Q ss_pred             eeeCccCCCCCccc-cCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCC---------------
Q 012027           79 DISGTAIRCPPSSI-FLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSG---------------  140 (472)
Q Consensus        79 ~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~---------------  140 (472)
                      +|++|.+..+|..+ +++++|+.|++++|......+  +..+.....+....+.+....+..+..               
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            99999999998875 899999999999997443322  233333344444444443321111111               


Q ss_pred             ----------------------CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeec
Q 012027          141 ----------------------LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKL  197 (472)
Q Consensus       141 ----------------------l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l  197 (472)
                                            .++|+.|++++|.+..   +..++.+++|+.|+|++|.+..+ |..+..+++|+.|+|
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence                                  1346666666666652   35688899999999999999855 788999999999999


Q ss_pred             cCccccccCCCC---CCCccEEEEccCCCcccccc
Q 012027          198 EDCKRLQSLPQL---PPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       198 ~~c~~L~~lp~l---p~~L~~L~~~~c~sL~~~~~  229 (472)
                      ++|. +..+|..   .++|+.|++++|. +..++.
T Consensus       286 s~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~  318 (597)
T 3oja_B          286 SNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVER  318 (597)
T ss_dssp             TTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred             CCCC-CCCCCcccccCCCCcEEECCCCC-CCccCc
Confidence            9986 4445532   4689999999884 445543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=4.1e-18  Score=167.50  Aligned_cols=217  Identities=21%  Similarity=0.244  Sum_probs=162.0

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      +|+.++++++.++.+|..+.  ++|++|+|++|. +..+|. .+.++++|++|++++|......|..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            57889999999998887654  789999999987 555554 68899999999999987666568889999999999999


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCc--CCCCCCCCCCCcCEEeccCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGA--LMLPSLSGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~l~~l~~l~~L~~L~L~~~~l~~~  157 (472)
                      +|.+.++|..+.  ++|+.|++++|......+  +..+.....+....+....  .....+..+++|+.|++++|.+.. 
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            999999988765  799999999887432211  1223333334444444432  223337788999999999998864 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC---CCCCccEEEEccCCCcccccc
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~~~~c~sL~~~~~  229 (472)
                       +|..+.  ++|+.|++++|.++.+ |..+..+++|+.|++++|..-...+.   -.++|+.|++.+| .+..++.
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~  257 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG  257 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence             777654  8899999999999866 67889999999999999864433221   1257899999887 4555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=6.1e-18  Score=173.05  Aligned_cols=194  Identities=23%  Similarity=0.311  Sum_probs=158.4

Q ss_pred             CCCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +++|++|+|++|.|..++ ..+..+++|++|+|++|. +..+|. .+..+++|++|+|++|......+..+.++++|++|
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            578999999999999886 568999999999999986 667765 68899999999999987554445578999999999


Q ss_pred             eeeC-ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           79 DISG-TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        79 ~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      ++++ +.+..++. .+.++++|+.|++++|...                        .+|.+..+++|+.|+|++|.+. 
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~l~~L~~L~Ls~N~l~-  220 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------------------------EIPNLTPLIKLDELDLSGNHLS-  220 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------------------------SCCCCTTCSSCCEEECTTSCCC-
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCc------------------------cccccCCCcccCEEECCCCccC-
Confidence            9999 45666655 6889999999999998632                        2456788899999999999986 


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC-C---CCCccEEEEccC
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ-L---PPNVEKVRVNGC  221 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~-l---p~~L~~L~~~~c  221 (472)
                      +..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|. .   .++|+.|+++++
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSS
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCC
Confidence            45578899999999999999999966 4578899999999999985 444443 1   245666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=6.8e-18  Score=166.10  Aligned_cols=189  Identities=20%  Similarity=0.207  Sum_probs=126.7

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      +|+.++++++.++.+|..+.  ++|++|++++|. +..+ |..+.++++|++|++++|......|..++++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            58899999999999998664  789999999987 5555 4578999999999999987666568889999999999999


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCc--CCCCCCCCCCCcCEEeccCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGA--LMLPSLSGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~l~~l~~l~~L~~L~L~~~~l~~~  157 (472)
                      +|.+..+|..+.  ++|++|++++|......+  +..+.....+....+.+..  .....+..+ +|+.|++++|.+.. 
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence            999999998776  899999999987443222  2233333334444444432  112224444 55555555555532 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccCC-cccCCCCCcceeeccCcc
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFVTLP-ASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp-~~i~~l~~L~~L~l~~c~  201 (472)
                       +|..+.  ++|++|+|++|.++.++ ..+..+++|+.|++++|.
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~  228 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ  228 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence             444332  45555555555555443 345555555555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=5.1e-18  Score=186.20  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             CCccEEEeeCCCCeeccc--cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCC-CCEE
Q 012027            2 ECLRELLLDKTDIKEMPL--SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVES-LEEL   78 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~--si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~-L~~L   78 (472)
                      ++|++|+|++|.+..+|.  .++++++|+.|+|++|. +..+| .++.+++|++|+|++|... .+|..+..+++ |++|
T Consensus       548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred             CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence            467777777777777776  67777777777777765 44667 5677777777777776544 67777777777 7777


Q ss_pred             eeeCccCCCCCccccCCCC--CcEEEecCCCC
Q 012027           79 DISGTAIRCPPSSIFLMKN--LKTLSFRGCNG  108 (472)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~~  108 (472)
                      ++++|.+..+|..+..+..  |+.|++++|..
T Consensus       625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             ECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence            7777777777766665543  77777776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=3.8e-18  Score=178.13  Aligned_cols=103  Identities=20%  Similarity=0.064  Sum_probs=68.2

Q ss_pred             CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.++.++ ..++.+++|++|+|++|......|..+.++++|++|++++|. +..+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence            35677777777777665 356777777777777766333335667777777777777754 3456655  6677777777


Q ss_pred             eCccCCC--CCccccCCCCCcEEEecCCC
Q 012027           81 SGTAIRC--PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        81 ~~~~i~~--lp~~i~~l~~L~~L~L~~~~  107 (472)
                      ++|.+..  +|..++++++|++|++++|.
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcc
Confidence            7777764  45667777777777666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.78  E-value=1.4e-17  Score=171.27  Aligned_cols=182  Identities=20%  Similarity=0.134  Sum_probs=105.5

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+++++.++.+| .++.+++|++|++++|. +..+|  ++.+++|++|++++|. +..++  ++++++|++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEEC
Confidence            367888888888888876 58888888888888876 56665  7778888888888865 33443  777788888888


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..+|  ++.+++|+.|++++|.... .+...+.....+....+...+. + .+..+++|+.|++++|++..  +|
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~ls~n~l~~--l~  186 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITK-L-DVTPQTQLTTLDCSFNKITE--LD  186 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCC-C-CCTTCTTCCEEECCSSCCCC--CC
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccc-c-ccccCCcCCEEECCCCccce--ec
Confidence            888777765  6777777777777776332 1222222222222222211110 1 23444445555555554432  33


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c  200 (472)
                        ++.+++|+.|++++|+++.++  +..+++|+.|++++|
T Consensus       187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred             --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCC
Confidence              344444444444444444432  344444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=2.4e-18  Score=183.06  Aligned_cols=107  Identities=17%  Similarity=0.074  Sum_probs=77.4

Q ss_pred             CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++++|+|++|.|+.+ |..|+.+++|++|+|++|......|..+.++++|++|++++|......|..++++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            3577788888887766 445777888888888877644445667777888888888877665556777777777777777


Q ss_pred             eCccCCCC-CccccCCCCCcEEEecCCCC
Q 012027           81 SGTAIRCP-PSSIFLMKNLKTLSFRGCNG  108 (472)
Q Consensus        81 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~  108 (472)
                      ++|.+..+ |..++++++|++|++++|..
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcc
Confidence            77777765 45667777777777777653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=3.7e-18  Score=175.46  Aligned_cols=165  Identities=22%  Similarity=0.135  Sum_probs=104.2

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+|++|.|+.++  ++.+++|++|++++|. +..+|  ++.+++|++|++++|... .++  ++.+++|++|++
T Consensus        84 l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l  155 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDC  155 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEEC
Confidence            467888888888888775  7788888888888875 55565  677778888888776533 342  666777777777


Q ss_pred             eCc-cCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGT-AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      ++| .+..+  .++.+++|+.|++++|.... .+...+.....+....+.+...   .+..+++|+.|++++|++..  +
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--i  227 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--I  227 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--C
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--c
Confidence            776 34444  35666777777777665322 2233333333344444444432   25566677777777776653  5


Q ss_pred             CCCCCCCCCCCEEEcCCCCCccCC
Q 012027          160 PSDIGNLHSLKTLYLSKNNFVTLP  183 (472)
Q Consensus       160 p~~l~~l~~L~~L~Ls~n~~~~lp  183 (472)
                      |  ++.+++|+.|++++|.++.+|
T Consensus       228 p--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             C--CTTCTTCSEEECCSSCCSCCC
T ss_pred             C--ccccCCCCEEEeeCCcCCCcC
Confidence            5  666677777777777666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=2.2e-18  Score=167.45  Aligned_cols=199  Identities=21%  Similarity=0.123  Sum_probs=143.5

Q ss_pred             CCCccEEEeeCCCCeec---cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh--hhhCCCCCC
Q 012027            1 MECLRELLLDKTDIKEM---PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL--ETVGQVESL   75 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~l---p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp--~~l~~l~~L   75 (472)
                      +++|++|+|++|.++.+   +..+..+++|++|++++|. +..+|..+..+++|++|++++|.. ..++  ..+..+++|
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNL  128 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTC
T ss_pred             cccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCC
Confidence            46788888888877754   5566778888888888865 566777777788888888887643 3333  367777888


Q ss_pred             CEEeeeCccCCC-CCccccCCCCCcEEEecCCCCCC---CCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccC
Q 012027           76 EELDISGTAIRC-PPSSIFLMKNLKTLSFRGCNGPP---SSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD  151 (472)
Q Consensus        76 ~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~  151 (472)
                      ++|++++|.+.. .|..+..+++|+.|++++|....   +.....+.....+....+.+.......+..+++|+.|++++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence            888888887774 45557777888888887775322   22233333444455555555554444588899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEcCCCCCcc-CCcccCCCC-CcceeeccCccc
Q 012027          152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVT-LPASINCLF-NLEKLKLEDCKR  202 (472)
Q Consensus       152 ~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~-lp~~i~~l~-~L~~L~l~~c~~  202 (472)
                      |.+.. ..+..+..+++|+.|+|++|.+.. .|..+..++ +|+.|++++|+.
T Consensus       209 N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          209 NNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             SCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            99863 334468899999999999999985 566788884 999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.6e-17  Score=157.14  Aligned_cols=190  Identities=23%  Similarity=0.301  Sum_probs=151.3

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L   80 (472)
                      +++.++++++.++.+|..+.  ++|+.|+|++|. +..+|. .+.++++|++|++++|.. ..+|. .+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence            46789999999999997664  789999999987 566664 789999999999999764 45554 4688999999999


Q ss_pred             eCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      ++|.+..+|.. +..+++|+.|++++|.....                      ....+..+++|+.|++++|.+..  +
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls~n~l~~--~  148 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSL----------------------PPRVFDSLTKLTYLSLGYNELQS--L  148 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCCC--C
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCee----------------------CHHHhCcCcCCCEEECCCCcCCc--c
Confidence            99999988754 57899999999999863221                      11226788999999999999863  5


Q ss_pred             CC-CCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCC--C--CCCccEEEEccC
Q 012027          160 PS-DIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQ--L--PPNVEKVRVNGC  221 (472)
Q Consensus       160 p~-~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~--l--p~~L~~L~~~~c  221 (472)
                      |. .++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+ ++.+|.  +  .++|+.|++.++
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCC
Confidence            54 48899999999999999998876 47889999999999984 455553  1  246777777664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=6.2e-18  Score=173.61  Aligned_cols=194  Identities=24%  Similarity=0.281  Sum_probs=158.8

Q ss_pred             CCCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      |++|++|+|++|.|+.++ ..+..+++|++|+|++|. +..+|. .+..+++|++|+|++|......+..+.++++|++|
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            578999999999999886 568999999999999987 666665 48889999999999987554444578999999999


Q ss_pred             eeeC-ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           79 DISG-TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        79 ~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      ++++ +.+..++. .+..+++|+.|++++|...                        .+|.+..+++|+.|+|++|.+. 
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~l~~L~~L~Ls~N~l~-  231 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK------------------------DMPNLTPLVGLEELEMSGNHFP-  231 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS------------------------SCCCCTTCTTCCEEECTTSCCS-
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCccc------------------------ccccccccccccEEECcCCcCc-
Confidence            9999 56666665 5889999999999998632                        2456788899999999999996 


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC-C---CCCccEEEEccC
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ-L---PPNVEKVRVNGC  221 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~-l---p~~L~~L~~~~c  221 (472)
                      +..|..+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+ +..+|. .   .++|+.|+++++
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence            45577899999999999999999865 5678999999999999985 455543 1   246677776664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=2e-18  Score=183.59  Aligned_cols=222  Identities=17%  Similarity=0.114  Sum_probs=114.7

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchh-----------------
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN-----------------   64 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~-----------------   64 (472)
                      ++|+.|+++++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|.....                 
T Consensus       285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN  360 (606)
T ss_dssp             TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred             CCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence            45666666666666666 466666666666666653 55552 3 455555555555433222                 


Q ss_pred             -------hhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCC---CCCCCcchhhhcccCCCCcCC
Q 012027           65 -------LLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA---SCYLPFPINLMRRSSDLGALM  134 (472)
Q Consensus        65 -------lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  134 (472)
                             +|..++.+++|++|++++|.+..+|..+..+++|+.|++++|......+   ...+.....+....+......
T Consensus       361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence                   2455555566666666666555555556666666666666654222211   112222222333333333323


Q ss_pred             CCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCCC---C
Q 012027          135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQL---P  210 (472)
Q Consensus       135 l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~l---p  210 (472)
                      ...+..+++|+.|++++|.+....+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|+.....|..   .
T Consensus       441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  520 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL  520 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred             hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence            333555566666666666554223455566666666666666665533 344556666666666665433332321   1


Q ss_pred             CCccEEEEccCCCccccc
Q 012027          211 PNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       211 ~~L~~L~~~~c~sL~~~~  228 (472)
                      ++|+.|++++|. ++.++
T Consensus       521 ~~L~~L~l~~N~-l~~~p  537 (606)
T 3vq2_A          521 YSLSTLDCSFNR-IETSK  537 (606)
T ss_dssp             TTCCEEECTTSC-CCCEE
T ss_pred             CcCCEEECCCCc-CcccC
Confidence            355566665553 44443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=2.7e-18  Score=167.64  Aligned_cols=195  Identities=22%  Similarity=0.262  Sum_probs=147.4

Q ss_pred             CCCccEEEeeCCCCe-eccccc--cCCcCCcEEEeecCcCCCccCcccCCC-----CCCCEEEccCCCCchhhhhhhCCC
Q 012027            1 MECLRELLLDKTDIK-EMPLSI--ELLSGLVQLTLKGCKNLVRLPSNINSL-----KSLKTLNLLGCFKFENLLETVGQV   72 (472)
Q Consensus         1 l~~L~~L~L~~~~l~-~lp~si--~~L~~L~~L~L~~c~~l~~lp~~i~~L-----~~L~~L~Ls~c~~l~~lp~~l~~l   72 (472)
                      +++|++|+|++|.++ .+|..+  +.+++|++|+|++|. +..+|..+..+     ++|++|++++|......|..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            468999999999998 678776  899999999999987 55558777776     899999999988766666899999


Q ss_pred             CCCCEEeeeCccCCC---CCccc--cCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCC-C-CCCCCCcC
Q 012027           73 ESLEELDISGTAIRC---PPSSI--FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP-S-LSGLGSLT  145 (472)
Q Consensus        73 ~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~-l~~l~~L~  145 (472)
                      ++|++|++++|.+..   +|..+  ..+++|+.|++++|......                     ..+ . +..+++|+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQ  231 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCS
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCC
Confidence            999999999998763   34455  88999999999998632100                     001 1 24567888


Q ss_pred             EEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC--CCccEEEEccC
Q 012027          146 KLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNGC  221 (472)
Q Consensus       146 ~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~~~c  221 (472)
                      .|++++|.+.. ..| ..+..+++|+.|+|++|.++.+|..+.  ++|+.|++++|+ ++.+|.+.  ++|+.|++.+.
T Consensus       232 ~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          232 GLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred             EEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence            88888888863 333 446667888888888888888888776  888888888875 44455421  34555665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1.5e-17  Score=156.99  Aligned_cols=174  Identities=18%  Similarity=0.186  Sum_probs=141.0

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +.++++++++.++.+|..+.  ++|+.|+|++|......|..+.++++|++|+|++|......+..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            46789999999999998665  6899999999875554555788999999999999876665667788999999999999


Q ss_pred             ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC
Q 012027           83 TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        83 ~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      |.+..+|. .+..+++|+.|++++|....                       ..+. +..+++|+.|+|++|.+.. ..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~~-~~~  148 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------------------LPSGVFDRLTKLKELRLNTNQLQS-IPA  148 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCC-----------------------cChhHhccCCcccEEECcCCcCCc-cCH
Confidence            99998774 46789999999999886322                       1222 6778899999999999863 333


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~  202 (472)
                      ..++.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+.
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            468899999999999999998775 678889999999998863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=3.9e-18  Score=166.42  Aligned_cols=202  Identities=19%  Similarity=0.202  Sum_probs=157.3

Q ss_pred             ccEEEeeCCCCe--ecccccc-------CCcCCcEEEeecCcCCCccCccc--CCCCCCCEEEccCCCCchhhhhhhCCC
Q 012027            4 LRELLLDKTDIK--EMPLSIE-------LLSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLLGCFKFENLLETVGQV   72 (472)
Q Consensus         4 L~~L~L~~~~l~--~lp~si~-------~L~~L~~L~L~~c~~l~~lp~~i--~~L~~L~~L~Ls~c~~l~~lp~~l~~l   72 (472)
                      |+.|+|+++.+.  .+|..+.       .+++|++|+|++|.....+|..+  ..+++|++|++++|...+. |..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            677889988886  4666565       79999999999998666889876  8999999999999875544 7777766


Q ss_pred             -----CCCCEEeeeCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC--CCCCCCc
Q 012027           73 -----ESLEELDISGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS--LSGLGSL  144 (472)
Q Consensus        73 -----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~l~~L  144 (472)
                           ++|++|++++|.+..++ ..++++++|+.|++++|.......                    .++.  +..+++|
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L  203 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--------------------LISALCPLKFPTL  203 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------------------HHHHSCTTSCTTC
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------------------HHHHHHhccCCCC
Confidence                 99999999999999876 789999999999999987321000                    0111  3678899


Q ss_pred             CEEeccCCCCCCC-CCC-CCCCCCCCCCEEEcCCCCCccCC--cccCCCCCcceeeccCccccccCCC-CCCCccEEEEc
Q 012027          145 TKLDLSDCGLGEG-AIP-SDIGNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVN  219 (472)
Q Consensus       145 ~~L~L~~~~l~~~-~lp-~~l~~l~~L~~L~Ls~n~~~~lp--~~i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~  219 (472)
                      ++|++++|.+..- .++ ..+..+++|+.|+|++|.++..+  ..+..+++|+.|++++|.. +.+|. ++++|+.|+++
T Consensus       204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls  282 (312)
T 1wwl_A          204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLS  282 (312)
T ss_dssp             CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCCSEEEEEECC
T ss_pred             CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-ChhhhhccCCceEEECC
Confidence            9999999998620 122 22357899999999999999755  4567789999999999874 46765 45689999998


Q ss_pred             cCCCccccc
Q 012027          220 GCASLVTLL  228 (472)
Q Consensus       220 ~c~sL~~~~  228 (472)
                      ++ .++.++
T Consensus       283 ~N-~l~~~p  290 (312)
T 1wwl_A          283 YN-RLDRNP  290 (312)
T ss_dssp             SS-CCCSCC
T ss_pred             CC-CCCCCh
Confidence            87 455554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.76  E-value=6.4e-18  Score=176.44  Aligned_cols=217  Identities=17%  Similarity=0.148  Sum_probs=149.6

Q ss_pred             CCCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCch-hhhhhhCCCCCCCEE
Q 012027            1 MECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE-NLLETVGQVESLEEL   78 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L   78 (472)
                      +++|++|+|++|.|+.+ |..++.+++|++|+|++|. +..+|..  .+++|++|++++|.... .+|..++++++|++|
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            56889999999988877 5678889999999999876 6678876  78888888888877554 467788888888888


Q ss_pred             eeeCccCC--------------------------CCCccccCCC------------------------------------
Q 012027           79 DISGTAIR--------------------------CPPSSIFLMK------------------------------------   96 (472)
Q Consensus        79 ~L~~~~i~--------------------------~lp~~i~~l~------------------------------------   96 (472)
                      ++++|.+.                          ..|..+..+.                                    
T Consensus       121 ~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  200 (520)
T 2z7x_B          121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV  200 (520)
T ss_dssp             EEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred             EecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence            88777653                          1233333321                                    


Q ss_pred             -----------------------------------------------CCcEEEecCCCCCCCCCCCC-------CCcchh
Q 012027           97 -----------------------------------------------NLKTLSFRGCNGPPSSASCY-------LPFPIN  122 (472)
Q Consensus        97 -----------------------------------------------~L~~L~L~~~~~~~~~~~~~-------~~~~~~  122 (472)
                                                                     +|+.|++++|......+...       +.....
T Consensus       201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~  280 (520)
T 2z7x_B          201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI  280 (520)
T ss_dssp             CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred             ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence                                                           45555655554221222111       111111


Q ss_pred             h--------------------------hcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 012027          123 L--------------------------MRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSK  176 (472)
Q Consensus       123 l--------------------------~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~  176 (472)
                      +                          ....+.+..  .+....+++|++|++++|.+. +.+|..++.+++|+.|+|++
T Consensus       281 l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH--MLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC--CCCCSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCS
T ss_pred             ccccccceecchhhhhcccccCceeEEEcCCCcccc--ccchhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccC
Confidence            1                          111111111  111267889999999999987 56788899999999999999


Q ss_pred             CCCcc---CCcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCCC
Q 012027          177 NNFVT---LPASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCAS  223 (472)
Q Consensus       177 n~~~~---lp~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~s  223 (472)
                      |+++.   +|..+..+++|+.|++++|.....+|.    ..++|+.|++++|.-
T Consensus       358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            99984   556789999999999999886654553    236889999988853

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1.1e-17  Score=163.10  Aligned_cols=168  Identities=23%  Similarity=0.307  Sum_probs=147.3

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+|++|.+..+++ +..+++|++|+|++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEEC
Confidence            5789999999999999988 9999999999999987 77776 48899999999999986 445665 899999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..++. +..+++|+.|++++|....                        ++.+..+++|+.|++++|.+.+  ++
T Consensus       137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~~--~~  189 (308)
T 1h6u_A          137 DLNQITNISP-LAGLTNLQYLSIGNAQVSD------------------------LTPLANLSKLTTLKADDNKISD--IS  189 (308)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCCC------------------------CGGGTTCTTCCEEECCSSCCCC--CG
T ss_pred             CCCccCcCcc-ccCCCCccEEEccCCcCCC------------------------ChhhcCCCCCCEEECCCCccCc--Ch
Confidence            9999998887 8899999999999986322                        2237788999999999999964  55


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~  202 (472)
                      . +..+++|+.|+|++|.++.++ .+..+++|+.|++++|+.
T Consensus       190 ~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence            4 889999999999999999888 489999999999999873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=5.1e-18  Score=178.93  Aligned_cols=193  Identities=24%  Similarity=0.248  Sum_probs=106.4

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh----------------
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL----------------   65 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l----------------   65 (472)
                      ++|++|+++++.+..+|..+..+ +|+.|++++|. +..+|.  ..+++|++|++++|.....+                
T Consensus       282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n  357 (570)
T 2z63_A          282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN  357 (570)
T ss_dssp             TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred             CcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence            57888888888888888877777 88888888776 446664  23444444444444333222                


Q ss_pred             --------hhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCC-C
Q 012027           66 --------LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML-P  136 (472)
Q Consensus        66 --------p~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~  136 (472)
                              |..+..+++|++|++++|.+..+|..+..+++|+.|++++|..                      ..... .
T Consensus       358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~~~~  415 (570)
T 2z63_A          358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL----------------------KQMSEFS  415 (570)
T ss_dssp             CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE----------------------ESCTTSC
T ss_pred             ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcc----------------------ccccchh
Confidence                    3444455555555555555555444455555555555555442                      21111 1


Q ss_pred             CCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--cCCcccCCCCCcceeeccCccccccCCCC---CC
Q 012027          137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV--TLPASINCLFNLEKLKLEDCKRLQSLPQL---PP  211 (472)
Q Consensus       137 ~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~--~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~  211 (472)
                      .+..+++|+.|++++|.+. +..|..+..+++|+.|+|++|.+.  .+|..+..+++|+.|++++|+.....|..   .+
T Consensus       416 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence            2455555666666665554 334555555566666666666554  35555555666666666655433332321   13


Q ss_pred             CccEEEEccC
Q 012027          212 NVEKVRVNGC  221 (472)
Q Consensus       212 ~L~~L~~~~c  221 (472)
                      +|+.|++.+|
T Consensus       495 ~L~~L~l~~n  504 (570)
T 2z63_A          495 SLQVLNMASN  504 (570)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEeCCCC
Confidence            5555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=1.7e-17  Score=158.64  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=147.6

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      +++|++|+|++|.+..++ .++.+++|++|++++|. +..+|. .+.++++|++|++++|......+..++.+++|++|+
T Consensus        62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            578999999999999876 69999999999999987 555554 578999999999999876655556689999999999


Q ss_pred             eeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCC
Q 012027           80 ISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~  157 (472)
                      +++|.+..+|.. +..+++|+.|++++|....                       ..+. +..+++|+.|++++|.+. +
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~  195 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-----------------------LPEGVFDKLTQLKDLRLYQNQLK-S  195 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCc-----------------------cCHHHhcCCccCCEEECCCCcCC-c
Confidence            999999988765 5889999999999986322                       1222 678899999999999997 4


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP  210 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp  210 (472)
                      ..|..++.+++|+.|+|++|.+.      +.+++|+.|++..|.....+|...
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred             cCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcc
Confidence            45566899999999999999876      346689999999888777776544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=3e-17  Score=173.16  Aligned_cols=215  Identities=16%  Similarity=0.090  Sum_probs=152.4

Q ss_pred             CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.|+.++ ..++.+++|++|+|++|......|..+.++++|++|++++|. +..+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence            46888888888888776 468888888888888876333336678888888888888865 4567776  7888888888


Q ss_pred             eCccCCCCC--ccccCCCCCcEEEecCCCCCCCCCCCCCCcc--------------------------------------
Q 012027           81 SGTAIRCPP--SSIFLMKNLKTLSFRGCNGPPSSASCYLPFP--------------------------------------  120 (472)
Q Consensus        81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~--------------------------------------  120 (472)
                      ++|.+..+|  ..++++++|++|++++|..... ....+...                                      
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  207 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS  207 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence            888888654  6788888888888887753211 00000000                                      


Q ss_pred             -----------------------------------------------------------------------hhhhcccCC
Q 012027          121 -----------------------------------------------------------------------INLMRRSSD  129 (472)
Q Consensus       121 -----------------------------------------------------------------------~~l~~~~~~  129 (472)
                                                                                             ..+....+.
T Consensus       208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  287 (562)
T 3a79_B          208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT  287 (562)
T ss_dssp             CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred             chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence                                                                                   000000011


Q ss_pred             CCcCCCCC-C-----------------------------------------------------CCCCCcCEEeccCCCCC
Q 012027          130 LGALMLPS-L-----------------------------------------------------SGLGSLTKLDLSDCGLG  155 (472)
Q Consensus       130 ~~~~~l~~-l-----------------------------------------------------~~l~~L~~L~L~~~~l~  155 (472)
                      +.+ .+|. +                                                     ..+++|++|++++|.+.
T Consensus       288 l~~-~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~  366 (562)
T 3a79_B          288 ITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT  366 (562)
T ss_dssp             ECS-CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred             eec-cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc
Confidence            111 1111 1                                                     57789999999999997


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCC---cccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCC
Q 012027          156 EGAIPSDIGNLHSLKTLYLSKNNFVTLP---ASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCA  222 (472)
Q Consensus       156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp---~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~  222 (472)
                       +.+|..++.+++|+.|+|++|.++.+|   ..+..+++|+.|++++|.....+|.    ..++|+.|++++|.
T Consensus       367 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          367 -DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             -TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             -cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence             568888999999999999999998655   5688999999999999986554654    23688889988875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=1.1e-16  Score=169.83  Aligned_cols=203  Identities=24%  Similarity=0.268  Sum_probs=101.8

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      ++.|+++++.|+.+|..+.  ++|++|+|++|. +..+|.   .+++|++|+|++|. +..+|.   .+++|++|++++|
T Consensus        42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred             CcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence            5556666666666655443  556666666554 445554   34555566665543 334444   3455555555555


Q ss_pred             cCCCCCcccc-----------------CCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCE
Q 012027           84 AIRCPPSSIF-----------------LMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTK  146 (472)
Q Consensus        84 ~i~~lp~~i~-----------------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~  146 (472)
                      .+..+|..+.                 .+++|++|++++|.... .+. .......+....+.+..  +|  ..+++|+.
T Consensus       112 ~l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~--l~--~~~~~L~~  185 (622)
T 3g06_A          112 PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTS--LP--MLPSGLQE  185 (622)
T ss_dssp             CCCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC--CC--CCCTTCCE
T ss_pred             cCCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCC-ccCCCCEEECCCCCCCC--Cc--ccCCCCcE
Confidence            5555444100                 12455555555554221 110 11111112222222221  11  22355666


Q ss_pred             EeccCCCCCCCCCCCCCC-----------------CCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC
Q 012027          147 LDLSDCGLGEGAIPSDIG-----------------NLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL  209 (472)
Q Consensus       147 L~L~~~~l~~~~lp~~l~-----------------~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l  209 (472)
                      |++++|.+..  +|..+.                 .+++|+.|+|++|.++.+|   ..+++|+.|++++| .+..+|..
T Consensus       186 L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~  259 (622)
T 3g06_A          186 LSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPML  259 (622)
T ss_dssp             EECCSSCCSC--CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCC
T ss_pred             EECCCCCCCC--CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcc
Confidence            6666666542  333221                 1255666666666666666   34566777777776 45566666


Q ss_pred             CCCccEEEEccCCCcccccc
Q 012027          210 PPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       210 p~~L~~L~~~~c~sL~~~~~  229 (472)
                      +++|+.|++++| .+..++.
T Consensus       260 ~~~L~~L~Ls~N-~L~~lp~  278 (622)
T 3g06_A          260 PSGLLSLSVYRN-QLTRLPE  278 (622)
T ss_dssp             CTTCCEEECCSS-CCCSCCG
T ss_pred             cccCcEEeCCCC-CCCcCCH
Confidence            677777777766 4555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.74  E-value=9.8e-18  Score=176.09  Aligned_cols=198  Identities=19%  Similarity=0.197  Sum_probs=145.6

Q ss_pred             CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.++.+ |..++.+++|++|++++|......|..+.++++|++|++++|...+..|..++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4788999999988877 456888999999999988744444467888999999999988766555666888999999999


Q ss_pred             eCccCCC--CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027           81 SGTAIRC--PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        81 ~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      ++|.+..  .|..++++++|+.|++++|......                     ....+.++++|++|++++|.+. +.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---------------------~~~~~~~l~~L~~L~L~~n~l~-~~  163 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI---------------------RRIDFAGLTSLNELEIKALSLR-NY  163 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------CTTTTTTCCEEEEEEEEETTCC-EE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCcccccc---------------------CHhhhhcccccCeeeccCCccc-cc
Confidence            9998884  4677888999999999887632210                     1123677788888888888876 55


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCcccccc------CCCCCCCccEEEEccC
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCKRLQS------LPQLPPNVEKVRVNGC  221 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~~L~~------lp~lp~~L~~L~~~~c  221 (472)
                      +|..++.+++|+.|++++|.+..+|..+ ..+++|+.|++++|..-..      +....++|+.|++.++
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence            7778888888888888888877776654 4578888888888764331      1223456666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=3.7e-18  Score=166.45  Aligned_cols=211  Identities=19%  Similarity=0.182  Sum_probs=117.2

Q ss_pred             ccEEEeeCCCCee--ccc--cccCCcCCcEEEeecCcCCCccCccc--CCCCCCCEEEccCCCCchhhh----hhhCCCC
Q 012027            4 LRELLLDKTDIKE--MPL--SIELLSGLVQLTLKGCKNLVRLPSNI--NSLKSLKTLNLLGCFKFENLL----ETVGQVE   73 (472)
Q Consensus         4 L~~L~L~~~~l~~--lp~--si~~L~~L~~L~L~~c~~l~~lp~~i--~~L~~L~~L~Ls~c~~l~~lp----~~l~~l~   73 (472)
                      ++.|.+.++.+..  +..  .+..+++|++|++++|......|..+  ..+++|++|++++|......+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            4666666665541  111  12234567777777777555666666  677777777777776554332    3345677


Q ss_pred             CCCEEeeeCccCCCCC-ccccCCCCCcEEEecCCCCCC------CCCCCCCCcchhhhcccCCCCcCCCCC-----CCCC
Q 012027           74 SLEELDISGTAIRCPP-SSIFLMKNLKTLSFRGCNGPP------SSASCYLPFPINLMRRSSDLGALMLPS-----LSGL  141 (472)
Q Consensus        74 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~l~~-----l~~l  141 (472)
                      +|++|++++|.+..++ ..++.+++|++|++++|....      ......++....+....+.+..  ++.     +..+
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l  223 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAAAG  223 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHHHT
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHhcC
Confidence            7777777777777554 566777777777777776321      0000112222222222222211  111     2345


Q ss_pred             CCcCEEeccCCCCCCCCCCCCCCCC---CCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC--CCCCccEE
Q 012027          142 GSLTKLDLSDCGLGEGAIPSDIGNL---HSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ--LPPNVEKV  216 (472)
Q Consensus       142 ~~L~~L~L~~~~l~~~~lp~~l~~l---~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~--lp~~L~~L  216 (472)
                      ++|++|+|++|.+. +..|..++.+   ++|++|+|++|.++.+|..+.  ++|+.|++++|+. ..+|.  -.++|+.|
T Consensus       224 ~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L  299 (310)
T 4glp_A          224 VQPHSLDLSHNSLR-ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL-NRAPQPDELPEVDNL  299 (310)
T ss_dssp             CCCSSEECTTSCCC-CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC-CSCCCTTSCCCCSCE
T ss_pred             CCCCEEECCCCCCC-ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC-CCCchhhhCCCccEE
Confidence            66777777777665 3345555554   567777777777776666553  6677777766643 22222  22345555


Q ss_pred             EEcc
Q 012027          217 RVNG  220 (472)
Q Consensus       217 ~~~~  220 (472)
                      ++++
T Consensus       300 ~L~~  303 (310)
T 4glp_A          300 TLDG  303 (310)
T ss_dssp             ECSS
T ss_pred             ECcC
Confidence            5444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=5.7e-18  Score=173.94  Aligned_cols=208  Identities=22%  Similarity=0.245  Sum_probs=148.9

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCC-------------CEEEccCCCCchhhhhh
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSL-------------KTLNLLGCFKFENLLET   68 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L-------------~~L~Ls~c~~l~~lp~~   68 (472)
                      .+|++|+++++.+.++|.+|++|++|++|++++|...+.+|.+++++++|             ++|++++|. +..+|..
T Consensus        11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~   89 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred             ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence            57899999999999999999999999999999998777899999998875             999999976 5667763


Q ss_pred             hCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEe
Q 012027           69 VGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLD  148 (472)
Q Consensus        69 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~  148 (472)
                         .++|++|++++|.++.+|..   +++|+.|++++|..... +. .......+....+.+..  +|.+..+++|++|+
T Consensus        90 ---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-~~-~~~~L~~L~L~~n~l~~--lp~~~~l~~L~~L~  159 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SD-LPPLLEYLGVSNNQLEK--LPELQNSSFLKIID  159 (454)
T ss_dssp             ---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CS-CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEE
T ss_pred             ---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-cC-CCCCCCEEECcCCCCCC--CcccCCCCCCCEEE
Confidence               47899999999999999864   48899999999864321 11 11233345555565554  56799999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCccccc
Q 012027          149 LSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       149 L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~  228 (472)
                      +++|.+..  +|..+   .+|++|++++|.++.+| .++.+++|+.|++++|. +..+|..+++|+.|++.+| .+..++
T Consensus       160 l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n-~l~~lp  231 (454)
T 1jl5_A          160 VDNNSLKK--LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILEELP  231 (454)
T ss_dssp             CCSSCCSC--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSSCC
T ss_pred             CCCCcCcc--cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCC-cCCccc
Confidence            99999863  77654   58999999999999998 69999999999999986 5568888899999999988 455554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.6e-17  Score=160.46  Aligned_cols=166  Identities=27%  Similarity=0.373  Sum_probs=112.6

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ++|+.|+++++.+..++. ++.+++|++|++++|. +..++. +.++++|++|++++|. +..+|. ++.+++|++|+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECT
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECC
Confidence            467777777777777654 7777777777777765 555555 6777777777777764 334443 6777777777777


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      +|.+..++ .+..+++|+.|++++|....                        ++.+..+++|+.|++++|.+.+  ++.
T Consensus       121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~L~~N~l~~--~~~  173 (291)
T 1h6t_A          121 HNGISDIN-GLVHLPQLESLYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IVP  173 (291)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--CGG
T ss_pred             CCcCCCCh-hhcCCCCCCEEEccCCcCCc------------------------chhhccCCCCCEEEccCCcccc--chh
Confidence            77777663 46677777777777765221                        2335566777777777777753  333


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027          162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~  201 (472)
                       +..+++|+.|+|++|.++.+|. +..+++|+.|++++|+
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             -hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence             6777777777777777777763 6777777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=1.2e-17  Score=159.92  Aligned_cols=178  Identities=22%  Similarity=0.211  Sum_probs=144.2

Q ss_pred             CCCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            1 MECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      +++|++|+|++|.+..++. .++.+++|++|+|++|......|..+.++++|++|++++|......+..++.+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            5789999999999998876 689999999999999874444446789999999999999876554455789999999999


Q ss_pred             eeCccCCC--CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCC---CCCcC-EEeccCCC
Q 012027           80 ISGTAIRC--PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSG---LGSLT-KLDLSDCG  153 (472)
Q Consensus        80 L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~---l~~L~-~L~L~~~~  153 (472)
                      +++|.+..  +|..+..+++|+.|++++|.....                      ....+..   ++.|. .|++++|.
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----------------------YCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE----------------------CGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcC----------------------CHHHhhhhhhccccceeeecCCCc
Confidence            99999986  689999999999999999873221                      0111223   33343 89999999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCccc
Q 012027          154 LGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCKR  202 (472)
Q Consensus       154 l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~  202 (472)
                      +..  ++.......+|+.|+|++|.++.+|.. +..+++|+.|++++|+.
T Consensus       189 l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          189 MNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             ccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            863  666655566899999999999988875 58899999999999863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=5.4e-17  Score=179.35  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCC
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPN  212 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~  212 (472)
                      +..+++|+.|+|++|++. +..|..+..+++|++|+|++|.+..+ |..+..+++|+.|++++|. +..++.    -.++
T Consensus       286 ~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~  363 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEK  363 (844)
T ss_dssp             SSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCC
T ss_pred             hhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCC
Confidence            455666677777766664 33455667777777777777777654 5566777777777777764 333332    1246


Q ss_pred             ccEEEEccC
Q 012027          213 VEKVRVNGC  221 (472)
Q Consensus       213 L~~L~~~~c  221 (472)
                      |+.|++.++
T Consensus       364 L~~L~Ls~N  372 (844)
T 3j0a_A          364 LQTLDLRDN  372 (844)
T ss_dssp             CCEEEEETC
T ss_pred             CCEEECCCC
Confidence            667776664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.74  E-value=1.3e-17  Score=175.85  Aligned_cols=102  Identities=17%  Similarity=0.124  Sum_probs=89.8

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      .+++++++++++.+|..+.  ++|+.|+|++|. +..+| ..+.++++|++|++++|......|..++++++|++|++++
T Consensus        33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            4789999999999998664  899999999988 55554 6899999999999999876665688899999999999999


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPP  110 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~  110 (472)
                      |.++.+|..  .+++|++|++++|....
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~  135 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFDV  135 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCSB
T ss_pred             CcCCccCcc--ccccCCEEECCCCCccc
Confidence            999999987  89999999999998543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=5.7e-17  Score=167.07  Aligned_cols=84  Identities=14%  Similarity=0.330  Sum_probs=47.5

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+|++|.++.+++ ++.+++|++|++++|. +..++. +.++++|++|++++|. +..++. +.++++|++|++
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l  141 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLEL  141 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEE
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEEC
Confidence            3456666666666665555 6666666666666654 344444 5566666666666653 333333 555666666666


Q ss_pred             eCccCCCCC
Q 012027           81 SGTAIRCPP   89 (472)
Q Consensus        81 ~~~~i~~lp   89 (472)
                      ++|.+..++
T Consensus       142 ~~n~l~~~~  150 (466)
T 1o6v_A          142 SSNTISDIS  150 (466)
T ss_dssp             EEEEECCCG
T ss_pred             CCCccCCCh
Confidence            666555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=6e-18  Score=165.48  Aligned_cols=208  Identities=19%  Similarity=0.195  Sum_probs=140.3

Q ss_pred             CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.|+.++ ..++.+++|++|+|++|. +..+++ +..+++|++|++++|. +..++    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEEC
Confidence            57899999999998776 468899999999999887 444554 8889999999999875 44444    2477888888


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCC-CCCCCcCEEeccCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSL-SGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l-~~l~~L~~L~L~~~~l~~~  157 (472)
                      ++|.+..++..  .+++|+.|++++|......+  ...+.....+....+.+.......+ ..+++|++|++++|.+.. 
T Consensus       107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-  183 (317)
T 3o53_A          107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-  183 (317)
T ss_dssp             CSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred             CCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-
Confidence            88887766543  36778888888776433211  1122233334444444444333333 357788888888888753 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA  222 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~  222 (472)
                       ++. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. ++.+|..   .++|+.|++.++.
T Consensus       184 -~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          184 -VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             -EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             -ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence             443 334788888888888888887778888888888888874 4455542   2456666666553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=1.2e-16  Score=172.29  Aligned_cols=195  Identities=23%  Similarity=0.174  Sum_probs=91.0

Q ss_pred             CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEe
Q 012027           26 GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSF  103 (472)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L  103 (472)
                      +|+.|++++|+.....|..+..+++|++|++++|.....+| ..+..+++|++|++++|.+..+ +..+..+++|+.|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            45555555544333333444445555555555544333333 3444445555555555444422 233444444444444


Q ss_pred             cCCCCC----CCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC---CCCC----CCCCCCCCCCEE
Q 012027          104 RGCNGP----PSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE---GAIP----SDIGNLHSLKTL  172 (472)
Q Consensus       104 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~---~~lp----~~l~~l~~L~~L  172 (472)
                      ++|...    .+..+..+.....+....+.+.......+.++++|+.|++++|.+..   ..+|    ..++.+++|+.|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            444311    01111112222223333333332222225666666666666666542   0111    125666666666


Q ss_pred             EcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC----CCCccEEEEccC
Q 012027          173 YLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL----PPNVEKVRVNGC  221 (472)
Q Consensus       173 ~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l----p~~L~~L~~~~c  221 (472)
                      +|++|.++.+|. .+..+++|+.|++++|. ++.+|.-    .++|+.|++.++
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence            666666666664 35666666666666653 3344431    145666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=6.5e-17  Score=174.40  Aligned_cols=197  Identities=23%  Similarity=0.204  Sum_probs=113.5

Q ss_pred             CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      ++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .+.++++|++|++++|......|..++++++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            5677777777777755 4456777777777777765 555654 467777777777777654433345677777777777


Q ss_pred             eeCccCCCC-CccccCCCCCcEEEecCCCCCCCCCC--C--CCCcchhhhccc---------------------------
Q 012027           80 ISGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSAS--C--YLPFPINLMRRS---------------------------  127 (472)
Q Consensus        80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~--~--~~~~~~~l~~~~---------------------------  127 (472)
                      +++|.+... |..++++++|+.|++++|......+.  .  .......+....                           
T Consensus       128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  207 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL  207 (680)
T ss_dssp             CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred             CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence            777776644 44566677777777776642211110  0  001111111111                           


Q ss_pred             ------------------------CCCCcCCCCCCCCCC--CcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc
Q 012027          128 ------------------------SDLGALMLPSLSGLG--SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT  181 (472)
Q Consensus       128 ------------------------~~~~~~~l~~l~~l~--~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~  181 (472)
                                              +.+.......+..++  +|+.|++++|.+. +..|..++.+++|++|+|++|.+..
T Consensus       208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc
Confidence                                    111111111233333  3777777777665 3345567777777777777777663


Q ss_pred             C-CcccCCCCCcceeeccCc
Q 012027          182 L-PASINCLFNLEKLKLEDC  200 (472)
Q Consensus       182 l-p~~i~~l~~L~~L~l~~c  200 (472)
                      + |..+..+++|+.|++++|
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTC
T ss_pred             cChhhhcCCCCccEEeccch
Confidence            3 445666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1.7e-16  Score=157.34  Aligned_cols=203  Identities=21%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhh-hhhhCCCCCCCEEe
Q 012027            3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENL-LETVGQVESLEELD   79 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~   79 (472)
                      ++++|+|++|+|+.+|+ .|+++++|++|+|++|+.++.+|. .+.++++|+++...++..+..+ |..+..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            44555555555555543 245555555555555544444443 2344444444333333333333 33444555555555


Q ss_pred             eeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCC-CCcCEEeccCCCCCCC
Q 012027           80 ISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGL-GSLTKLDLSDCGLGEG  157 (472)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l-~~L~~L~L~~~~l~~~  157 (472)
                      +++|.+..+|.. .....++..|++.++..+...                     ....+..+ ..++.|++++|++.+ 
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l---------------------~~~~f~~~~~~l~~L~L~~N~i~~-  168 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI---------------------ERNSFVGLSFESVILWLNKNGIQE-  168 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE---------------------CTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccc---------------------cccchhhcchhhhhhccccccccC-
Confidence            555555544332 223334444444443322211                     11123333 246666666666642 


Q ss_pred             CCCCCCCCCCCCCEEEcCC-CCCccCCcc-cCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCcccccc
Q 012027          158 AIPSDIGNLHSLKTLYLSK-NNFVTLPAS-INCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~-n~~~~lp~~-i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~~  229 (472)
                       +|.......+|+.|++++ |.++.+|.. +..+++|+.|++++| +++.+|. ...+|+.|.+.+|.+|+.++.
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC
Confidence             555555556666666653 456666643 466666777777666 3555543 345666666666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=6.4e-17  Score=151.44  Aligned_cols=173  Identities=17%  Similarity=0.211  Sum_probs=142.2

Q ss_pred             CCCccEEEeeCCC-Ceeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCC-
Q 012027            1 MECLRELLLDKTD-IKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLE-   76 (472)
Q Consensus         1 l~~L~~L~L~~~~-l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~-   76 (472)
                      +++|++|++++|. ++.+++ .++.+++|++|++++|..++.+|. .+.++++|++|++++|. +..+|. ++.+++|+ 
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~  131 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDI  131 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCS
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-ccccccccc
Confidence            5789999999997 999886 589999999999999555778774 67889999999999986 455887 88899998 


Q ss_pred             --EEeeeCc-cCCCCCcc-ccCCCCCc-EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEecc
Q 012027           77 --ELDISGT-AIRCPPSS-IFLMKNLK-TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLS  150 (472)
Q Consensus        77 --~L~L~~~-~i~~lp~~-i~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~  150 (472)
                        +|++++| .+..+|.. +..+++|+ .|++++|....                       ..+. +.. ++|+.|+++
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-----------------------i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-----------------------VQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----------------------ECTTTTTT-CEEEEEECT
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----------------------cCHhhcCC-CCCCEEEcC
Confidence              9999999 99988764 88899999 99999886321                       1112 333 789999999


Q ss_pred             CCC-CCCCCCCCCCCCC-CCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027          151 DCG-LGEGAIPSDIGNL-HSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       151 ~~~-l~~~~lp~~l~~l-~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~  202 (472)
                      +|. +.. .-+..+..+ ++|+.|+|++|+++.+|..  .+++|+.|++.++..
T Consensus       188 ~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          188 KNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             TCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             CCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence            994 852 234568889 9999999999999999976  789999999998754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.72  E-value=3.2e-16  Score=160.86  Aligned_cols=197  Identities=23%  Similarity=0.273  Sum_probs=83.2

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ++|++|++++|.++.+|..   +++|++|++++|. +..+|..   .++|++|++++|.. ..+| .++++++|++|+++
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECC
Confidence            3566666666666665542   2445555555443 3333321   13445555544432 2244 24444445555554


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      +|.++.+|..+   .+|++|++++|..........+.....+....+.+..  +|..  .++|+.|++++|.+.  .+|.
T Consensus       162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~--l~~~--~~~L~~L~l~~n~l~--~lp~  232 (454)
T 1jl5_A          162 NNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK--LPDL--PLSLESIVAGNNILE--ELPE  232 (454)
T ss_dssp             SSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CCCC--CTTCCEEECCSSCCS--SCCC
T ss_pred             CCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc--CCCC--cCcccEEECcCCcCC--cccc
Confidence            44444444322   2444444444432211111111111122222222221  1111  124555555555443  2442


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccC
Q 012027          162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c  221 (472)
                       ++.+++|+.|++++|.++.+|..   +++|+.|++++|. +..+|..+++|+.|++++|
T Consensus       233 -~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          233 -LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             -CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             -cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence             44555555555555555544432   2445555554443 3334444444455544443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=8.4e-17  Score=168.99  Aligned_cols=189  Identities=20%  Similarity=0.205  Sum_probs=145.1

Q ss_pred             CCccEEEeeCCCCeeccccc-cCCcCCcEEEeecCcCCCccC---cccCCCCCCCEEEccCCCCchhhh---hhhCCCCC
Q 012027            2 ECLRELLLDKTDIKEMPLSI-ELLSGLVQLTLKGCKNLVRLP---SNINSLKSLKTLNLLGCFKFENLL---ETVGQVES   74 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si-~~L~~L~~L~L~~c~~l~~lp---~~i~~L~~L~~L~Ls~c~~l~~lp---~~l~~l~~   74 (472)
                      ++|++|++++|.+..+|..+ +.+++|++|++++|.....+|   ..++.+++|++|++++|.. ..++   ..++.+++
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCC
Confidence            46888999998888888876 579999999999988555554   3367889999999999754 3343   45888999


Q ss_pred             CCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCC
Q 012027           75 LEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGL  154 (472)
Q Consensus        75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l  154 (472)
                      |++|++++|.++.+|..+..+++|++|++++|....                        ++. .-.++|+.|++++|++
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~------------------------l~~-~~~~~L~~L~Ls~N~l  443 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV------------------------VKT-CIPQTLEVLDVSNNNL  443 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC------------------------CCT-TSCTTCSEEECCSSCC
T ss_pred             CCEEECCCCCCccCChhhcccccccEEECCCCCccc------------------------ccc-hhcCCceEEECCCCCh
Confidence            999999999999999989999999999999887321                        111 0125799999999988


Q ss_pred             CCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC---CCCCccEEEEccCC
Q 012027          155 GEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVRVNGCA  222 (472)
Q Consensus       155 ~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~~~~c~  222 (472)
                      ..  +   ++.+++|++|+|++|+++.+|. ...+++|+.|++++|+.-...|+   -.++|+.|++++++
T Consensus       444 ~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          444 DS--F---SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             SC--C---CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             hh--h---cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            63  3   3578899999999999999997 56789999999999864433332   12567777777765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=1.4e-16  Score=175.98  Aligned_cols=220  Identities=17%  Similarity=0.085  Sum_probs=143.1

Q ss_pred             CCccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      ++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            5678888888888766 556788888888888887666666 56677788888888887766555577777777777777


Q ss_pred             eeCccCCC-CCcc--ccCCCCCcEEEecCCCCCCCCC---CCCCCcchhhh--------------------------ccc
Q 012027           80 ISGTAIRC-PPSS--IFLMKNLKTLSFRGCNGPPSSA---SCYLPFPINLM--------------------------RRS  127 (472)
Q Consensus        80 L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~l~--------------------------~~~  127 (472)
                      |++|.+.. +|..  +.++++|+.|++++|......+   +..+.....+.                          ...
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            77777764 4443  6677777777777765332211   11222222122                          222


Q ss_pred             CCCCcCCCCCCCCCC------CcCEEeccCCCCCCCCCCCCC------------------------------------CC
Q 012027          128 SDLGALMLPSLSGLG------SLTKLDLSDCGLGEGAIPSDI------------------------------------GN  165 (472)
Q Consensus       128 ~~~~~~~l~~l~~l~------~L~~L~L~~~~l~~~~lp~~l------------------------------------~~  165 (472)
                      +.+.......+..+.      +|+.|++++|.+. +.++..+                                    ..
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS-TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCc-hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            222222222233333      3899999998764 2233221                                    11


Q ss_pred             --CCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027          166 --LHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA  222 (472)
Q Consensus       166 --l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~  222 (472)
                        .++|+.|+|++|.+..+ |..+..+++|+.|++++|..-...|..   .++|+.|+++++.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence              26899999999998855 567899999999999998755444432   3588999988763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.8e-16  Score=163.28  Aligned_cols=208  Identities=20%  Similarity=0.301  Sum_probs=134.9

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|++. +.+..+++ ++.+++|++|++++|. +..++. +..+++|++|++++|......|  ++.+++|++|++
T Consensus       155 l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  228 (466)
T 1o6v_A          155 LTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSL  228 (466)
T ss_dssp             CTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             CCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence            4567777775 44444544 7777777777777765 455543 6667777777777765443333  556777777777


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..++ .+..+++|+.|++++|......+...+.....+....+.+..  .+.+..+++|+.|++++|.+..  ++
T Consensus       229 ~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~--~~  303 (466)
T 1o6v_A          229 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--IS  303 (466)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCSC--CG
T ss_pred             CCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc--cccccCCCccCeEEcCCCcccC--ch
Confidence            777777664 466677777777777764433333333333334444444433  2336778888888888888753  43


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccCC
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGCA  222 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~  222 (472)
                      . ++.+++|+.|+|++|.+..++. +..+++|+.|++++|+ +..++.+  .++|+.|++.+|.
T Consensus       304 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          304 P-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             G-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred             h-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCc
Confidence            3 7788888888888888887665 7788888888888874 4444432  2577888887774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.9e-17  Score=148.33  Aligned_cols=151  Identities=20%  Similarity=0.256  Sum_probs=109.1

Q ss_pred             ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCC-CCccccCCCCCc
Q 012027           21 IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC-PPSSIFLMKNLK   99 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~   99 (472)
                      .+.+++|+.|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            4667778888888765 56777 5777788888888877 344443 57778888888888887774 567777888888


Q ss_pred             EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCC-CCCCCCCCCCCCCCCCCEEEcCCCC
Q 012027          100 TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCG-LGEGAIPSDIGNLHSLKTLYLSKNN  178 (472)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~Ls~n~  178 (472)
                      .|++++|.....                      .+..+..+++|++|++++|. +.+  +| .+..+++|+.|++++|.
T Consensus       116 ~L~Ls~n~i~~~----------------------~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          116 LLDISHSAHDDS----------------------ILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             EEECCSSBCBGG----------------------GHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC
T ss_pred             EEEecCCccCcH----------------------hHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC
Confidence            888877752210                      12225667788888888887 543  55 57888888888888888


Q ss_pred             CccCCcccCCCCCcceeeccCcc
Q 012027          179 FVTLPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       179 ~~~lp~~i~~l~~L~~L~l~~c~  201 (472)
                      ++.++ .+..+++|+.|++++|+
T Consensus       171 i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          171 VHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CcChH-HhccCCCCCEEEeeCcc
Confidence            88877 77888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=2.4e-17  Score=161.27  Aligned_cols=190  Identities=16%  Similarity=0.047  Sum_probs=146.3

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+|++|.+..+++ ++.+++|++|++++|. +..+|.    +++|++|++++|......+.   .+++|++|++
T Consensus        57 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l  127 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred             CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence            5789999999999998776 9999999999999986 666653    47888898888764433322   3677888888


Q ss_pred             eCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           81 SGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASC---YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        81 ~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      ++|.+..++ ..+..+++|+.|++++|......+..   .+.....+....+.+...  +....+++|+.|++++|.+..
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc
Confidence            888888764 46777888888888888643321111   123333344445544432  445568999999999999964


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccc
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L  203 (472)
                        +|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus       206 --l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          206 --MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             --ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             --chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence              777899999999999999999999999999999999999998765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=2.4e-17  Score=170.82  Aligned_cols=208  Identities=19%  Similarity=0.194  Sum_probs=142.4

Q ss_pred             CCccEEEeeCCCCeecc-ccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMP-LSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.|..++ ..++.+++|++|+|++|. +..+++ +..+++|++|+|++|. +..+|.    .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence            47899999999998775 568999999999999987 444444 8889999999999974 444443    378888888


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCC-CCCCcCEEeccCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLS-GLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~-~l~~L~~L~L~~~~l~~~  157 (472)
                      ++|.+..++..  .+++|+.|++++|......+  +..+.....+....+.+.+..+..+. .+++|+.|+|++|.+.. 
T Consensus       107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-  183 (487)
T 3oja_A          107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-  183 (487)
T ss_dssp             CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred             cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-
Confidence            88888877653  46788888888887433211  12233333344455555543333443 57778888888887753 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA  222 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~  222 (472)
                       +|. +..+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|..   .++|+.|++.+++
T Consensus       184 -~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          184 -VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             -EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             -ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence             333 345778888888888888777777788888888888865 3345432   2456666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=6.9e-16  Score=148.91  Aligned_cols=180  Identities=24%  Similarity=0.264  Sum_probs=148.7

Q ss_pred             cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCc
Q 012027           20 SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLK   99 (472)
Q Consensus        20 si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   99 (472)
                      .++++++|+.++++++. ++.+|..+.  ++|++|++++|......+..+..+++|++|++++|.+..++.. +.+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            37789999999999855 889998764  7999999999887666678899999999999999999988765 8899999


Q ss_pred             EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 012027          100 TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN  178 (472)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~  178 (472)
                      .|++++|...                        .+|. +..+++|+.|++++|.+.. ..|..+..+++|+.|+|++|.
T Consensus        81 ~L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           81 TLDLSHNQLQ------------------------SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             EEECCSSCCS------------------------SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC------------------------cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCC
Confidence            9999998632                        1333 6788999999999999973 334679999999999999999


Q ss_pred             CccCCcc-cCCCCCcceeeccCccccccCCC----CCCCccEEEEccCCCccccccc
Q 012027          179 FVTLPAS-INCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCASLVTLLGA  230 (472)
Q Consensus       179 ~~~lp~~-i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~sL~~~~~~  230 (472)
                      ++.+|.. +..+++|+.|++++|+ ++.+|.    -.++|+.|++.++ .++.++..
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~  190 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKG  190 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChh
Confidence            9988865 5789999999999986 556664    1368999999886 45555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=6.2e-17  Score=160.59  Aligned_cols=193  Identities=17%  Similarity=0.153  Sum_probs=157.8

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      ....+++++.++++|..+.  ++|++|++++|. +..+|. .+.++++|++|++++|......|..++++++|++|++++
T Consensus        33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEeeCCCCCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            3457788889999998665  599999999987 666765 789999999999999866555577899999999999999


Q ss_pred             ccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCC-CCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           83 TAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALML-PSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        83 ~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      |.++.+|.. +.++++|++|++++|.....                      .. ..+..+++|+.|++++|+......+
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l----------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~  167 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTL----------------------GETSLFSHLTKLQILRVGNMDTFTKIQR  167 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSS----------------------CSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCccc----------------------CchhhhccCCCCcEEECCCCccccccCH
Confidence            999999877 88999999999999863220                      11 2377899999999999953334446


Q ss_pred             CCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC----CCCCccEEEEccCC
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGCA  222 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c~  222 (472)
                      ..++.+++|++|++++|.+..+ |..+..+++|+.|++++|. +..+|.    ..++|+.|++.++.
T Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred             HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence            7899999999999999999865 8899999999999999987 344543    24688999988763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1e-16  Score=169.90  Aligned_cols=169  Identities=26%  Similarity=0.379  Sum_probs=140.5

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |++|+.|+++++.|..++. ++.|++|+.|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+..+++|++|+|
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence            4678899999999988874 8899999999999986 666666 8889999999999975 44455 6888999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..++ .+..+++|+.|+|++|....                        ++.+..+++|+.|+|++|.+..  ++
T Consensus       117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~------------------------l~~l~~l~~L~~L~Ls~N~l~~--~~  169 (605)
T 1m9s_A          117 EHNGISDIN-GLVHLPQLESLYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IV  169 (605)
T ss_dssp             TTSCCCCCG-GGGGCTTCSEEECCSSCCCC------------------------CGGGGSCTTCSEEECCSSCCCC--CG
T ss_pred             cCCCCCCCc-cccCCCccCEEECCCCccCC------------------------chhhcccCCCCEEECcCCcCCC--ch
Confidence            999998875 58889999999999886321                        2447788999999999999863  43


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L  203 (472)
                      . +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|+..
T Consensus       170 ~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          170 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence            3 899999999999999999886 6899999999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=167.69  Aligned_cols=104  Identities=24%  Similarity=0.352  Sum_probs=49.7

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEE
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEEL   78 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L   78 (472)
                      ++|++|+|++|.+..+++ .++++++|++|+|++|. +..+| ..+.++++|++|++++|. +..++. .++++++|++|
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEE
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccc-cccCCCccccccccccEE
Confidence            344444444444444432 24444555555554443 22222 344445555555555442 222222 35555555555


Q ss_pred             eeeCccCCC--CCccccCCCCCcEEEecCCC
Q 012027           79 DISGTAIRC--PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        79 ~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~  107 (472)
                      ++++|.+..  +|..++++++|+.|++++|.
T Consensus       130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             ecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            555555553  45555555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=4.3e-17  Score=157.52  Aligned_cols=178  Identities=20%  Similarity=0.256  Sum_probs=144.7

Q ss_pred             eeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC
Q 012027            9 LDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP   88 (472)
Q Consensus         9 L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l   88 (472)
                      +....+..+.. +..+++|+.|++++|. +..+|. +..+++|++|++++|.. ..++. +..+++|++|++++|.+..+
T Consensus        31 l~~~~~~~~~~-~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           31 LKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             TTCSCTTSEEC-HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred             hcCCCcccccc-hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCCC
Confidence            44445554433 6789999999999986 777775 88899999999999764 45555 89999999999999999987


Q ss_pred             CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCC
Q 012027           89 PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS  168 (472)
Q Consensus        89 p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~  168 (472)
                      |. +..+++|+.|++++|....                        ++.+..+++|+.|++++|.+..  + ..++.+++
T Consensus       106 ~~-l~~l~~L~~L~L~~n~i~~------------------------~~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~  157 (291)
T 1h6t_A          106 SS-LKDLKKLKSLSLEHNGISD------------------------INGLVHLPQLESLYLGNNKITD--I-TVLSRLTK  157 (291)
T ss_dssp             GG-GTTCTTCCEEECTTSCCCC------------------------CGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTT
T ss_pred             hh-hccCCCCCEEECCCCcCCC------------------------ChhhcCCCCCCEEEccCCcCCc--c-hhhccCCC
Confidence            75 8999999999999986322                        2446778999999999999974  4 56899999


Q ss_pred             CCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC--CCccEEEEccC
Q 012027          169 LKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNGC  221 (472)
Q Consensus       169 L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~~~c  221 (472)
                      |+.|+|++|.++.++. +..+++|+.|++++|. +..++.+.  ++|+.|++.++
T Consensus       158 L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          158 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEE
T ss_pred             CCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCC
Confidence            9999999999998886 9999999999999984 44555432  46777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=9.5e-17  Score=156.41  Aligned_cols=196  Identities=22%  Similarity=0.197  Sum_probs=147.6

Q ss_pred             CCccEEEeeCCCCe-eccccc--cCCcCCcEEEeecCcCCCccC----cccCCCCCCCEEEccCCCCchhhhhhhCCCCC
Q 012027            2 ECLRELLLDKTDIK-EMPLSI--ELLSGLVQLTLKGCKNLVRLP----SNINSLKSLKTLNLLGCFKFENLLETVGQVES   74 (472)
Q Consensus         2 ~~L~~L~L~~~~l~-~lp~si--~~L~~L~~L~L~~c~~l~~lp----~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~   74 (472)
                      ++|++|+|++|.+. .+|..+  +.+++|++|+|++|......|    ..+..+++|++|++++|......|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            46899999999888 456666  889999999999987544433    33457889999999998776666678888999


Q ss_pred             CCEEeeeCccCCC---C--CccccCCCCCcEEEecCCCCCCCCC-----CCCCCcchhhhcccCCCCcCCCCCCCCC---
Q 012027           75 LEELDISGTAIRC---P--PSSIFLMKNLKTLSFRGCNGPPSSA-----SCYLPFPINLMRRSSDLGALMLPSLSGL---  141 (472)
Q Consensus        75 L~~L~L~~~~i~~---l--p~~i~~l~~L~~L~L~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~l~~l~~l---  141 (472)
                      |++|++++|.+..   +  +..++.+++|++|++++|.......     ...+.....+....+.+....++.+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            9999999998753   3  2334688899999999887421111     1122344445566666665444445444   


Q ss_pred             CCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027          142 GSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       142 ~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~  202 (472)
                      ++|++|++++|.+.  .+|..+.  ++|+.|+|++|+++.+|. +..+++|+.|++++|+.
T Consensus       251 ~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          251 SALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             CcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence            79999999999996  4888775  899999999999999886 78899999999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=1.3e-15  Score=145.37  Aligned_cols=177  Identities=24%  Similarity=0.267  Sum_probs=147.5

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcc-cCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSN-INSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      ++|++|+|+++.|+.+++ .++.+++|++|+|++|. +..+|.. +.++++|++|++++|......+..+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            468999999999998876 68999999999999987 6677765 47899999999999875544445678999999999


Q ss_pred             eeCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027           80 ISGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      +++|.+..+|. .+..+++|+.|++++|.....                      ....+..+++|+.|++++|.+.. .
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~~-~  172 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL----------------------PKGVFDKLTSLKELRLYNNQLKR-V  172 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCSC-C
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc----------------------CHhHccCCcccceeEecCCcCcE-e
Confidence            99999998765 468999999999999863221                      11226788999999999999963 3


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCccc
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCKR  202 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~  202 (472)
                      .+..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            344589999999999999999988864 78899999999999863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=5.5e-17  Score=168.15  Aligned_cols=190  Identities=16%  Similarity=0.047  Sum_probs=147.0

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |++|++|+|++|.+..+++ ++.+++|++|+|++|. +..+|.    .++|++|++++|......+.   .+++|++|++
T Consensus        57 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L  127 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred             CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence            5789999999999997776 9999999999999986 666664    37888888888765443332   3577888888


Q ss_pred             eCccCCCC-CccccCCCCCcEEEecCCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCC
Q 012027           81 SGTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASC---YLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGE  156 (472)
Q Consensus        81 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~  156 (472)
                      ++|.+..+ |..++.+++|+.|++++|......+..   .+.....+....+.+...  +....+++|+.|+|++|.+..
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC
Confidence            88888865 556778888888888887644322211   223333455555555443  455679999999999999964


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccc
Q 012027          157 GAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L  203 (472)
                        +|..++.+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus       206 --~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          206 --MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             --ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             --CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence              777799999999999999999999999999999999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=2.6e-18  Score=169.07  Aligned_cols=198  Identities=17%  Similarity=0.188  Sum_probs=115.6

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCc-cCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVR-LPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++++.|++.++.+...++.+..+++|++|++++|..... +|..+..+++|++|++++|......+..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            456666666666665555555666666666666652222 5555666666666666666555556666666666666666


Q ss_pred             eCc-cCC--CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCC-CcCEEeccCC--C
Q 012027           81 SGT-AIR--CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLG-SLTKLDLSDC--G  153 (472)
Q Consensus        81 ~~~-~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~-~L~~L~L~~~--~  153 (472)
                      ++| .++  .++..+.++++|+.|++++|.....                     ..++. +..++ +|++|++++|  .
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------------~~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE---------------------KHVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH---------------------HHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh---------------------HHHHHHHHhcccCCCEEEeCCCccc
Confidence            666 455  2555566666666666666621110                     00111 34455 6777777777  3


Q ss_pred             CCCCCCCCCCCCCCCCCEEEcCCCC-Cc-cCCcccCCCCCcceeeccCccccc-----cCCCCCCCccEEEEccC
Q 012027          154 LGEGAIPSDIGNLHSLKTLYLSKNN-FV-TLPASINCLFNLEKLKLEDCKRLQ-----SLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       154 l~~~~lp~~l~~l~~L~~L~Ls~n~-~~-~lp~~i~~l~~L~~L~l~~c~~L~-----~lp~lp~~L~~L~~~~c  221 (472)
                      +.++.+|..+..+++|+.|+|++|. ++ ..+..+..+++|+.|++++|..+.     .+.. .++|+.|++.+|
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~  282 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI  282 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence            4433455556667777777777776 43 455566677777777777775321     1112 245666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.1e-17  Score=155.27  Aligned_cols=165  Identities=21%  Similarity=0.210  Sum_probs=130.0

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      ++..+++.++.++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence            3556677788888777 58888999999999875 77787 58888999999998875 455665 88889999999999


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      |.+..+|....  ++|+.|++++|....                        ++.+..+++|+.|++++|++.+  ++ .
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~~~l~~l~~L~~L~Ls~N~i~~--~~-~  145 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRD------------------------TDSLIHLKNLEILSIRNNKLKS--IV-M  145 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSB------------------------SGGGTTCTTCCEEECTTSCCCB--CG-G
T ss_pred             CccCCcCcccc--CcccEEEccCCccCC------------------------ChhhcCcccccEEECCCCcCCC--Ch-H
Confidence            99888876444  889999988876321                        2346778889999999888864  54 5


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027          163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~  202 (472)
                      ++.+++|+.|+|++|.++.+ ..+..+++|+.|++++|+.
T Consensus       146 l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            78888899999999988877 5788888888888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=8.6e-16  Score=144.91  Aligned_cols=157  Identities=21%  Similarity=0.201  Sum_probs=131.5

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|+.|+|++|.+..+++ .++.+++|++|+|++|......|..+..+++|++|++++|......+..++.+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            468999999999998765 5899999999999998744445556889999999999998766555567899999999999


Q ss_pred             eCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCC-CCCCCCCcCEEeccCCCCCCCC
Q 012027           81 SGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLP-SLSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      ++|.+..+|.. +..+++|+.|++++|....                       ..+ .+..+++|+.|+|++|.+. +.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~~  170 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-----------------------IPAGAFDKLTNLQTLSLSTNQLQ-SV  170 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCc-----------------------cCHHHcCcCcCCCEEECCCCcCC-cc
Confidence            99999998876 5789999999999986322                       122 3788999999999999997 34


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccC
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFVTL  182 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~~l  182 (472)
                      .+..+..+++|+.|+|++|.+..-
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            455789999999999999998754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=7.3e-16  Score=161.81  Aligned_cols=176  Identities=23%  Similarity=0.248  Sum_probs=118.5

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|+.|+|++++|+.+|..+  +++|++|+|++|. +..+|   ..+++|++|++++|. +..+|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence            7899999999999999876  4899999999986 67888   458999999999985 455888 655  999999999


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      |.++.+|.   .+++|+.|++++|.... .+. .+.....+....+.+..  +|.+.  ++|+.|+|++|++.  .+|. 
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~--lp~l~--~~L~~L~Ls~N~L~--~lp~-  197 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTM-LPE-LPTSLEVLSVRNNQLTF--LPELP--ESLEALDVSTNLLE--SLPA-  197 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC--CCCCC--TTCCEEECCSSCCS--SCCC-
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCc-CCC-cCCCcCEEECCCCCCCC--cchhh--CCCCEEECcCCCCC--chhh-
Confidence            99999988   78999999999987432 111 12222223333343333  22222  55555565555554  2454 


Q ss_pred             CCCCCCC-------CEEEcCCCCCccCCcccCCCCCcceeeccCccc
Q 012027          163 IGNLHSL-------KTLYLSKNNFVTLPASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       163 l~~l~~L-------~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~  202 (472)
                      +..  +|       +.|+|++|.++.+|..+..+++|+.|+|++|+.
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence            332  44       555666555555555555555556665555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=3.6e-18  Score=168.05  Aligned_cols=179  Identities=20%  Similarity=0.216  Sum_probs=145.6

Q ss_pred             CCCccEEEeeCCCCee--ccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCch--hhhhhhCCCCCCC
Q 012027            1 MECLRELLLDKTDIKE--MPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFE--NLLETVGQVESLE   76 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~--lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~   76 (472)
                      +++|++|+|++|.+..  ++..+..+++|++|+|++|......|..+..+++|++|++++|..+.  .++..+..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4789999999999873  78889999999999999997555778888999999999999996555  4788899999999


Q ss_pred             EEeeeCc-cCCC--CCccccCCC-CCcEEEecCCC-CCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEecc
Q 012027           77 ELDISGT-AIRC--PPSSIFLMK-NLKTLSFRGCN-GPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLS  150 (472)
Q Consensus        77 ~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~  150 (472)
                      +|++++| .++.  ++..+..++ +|+.|++++|. ....                     ..++. +..+++|+.|+++
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~---------------------~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------------SDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH---------------------HHHHHHHHHCTTCSEEECT
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH---------------------HHHHHHHhhCCCCCEEeCC
Confidence            9999999 8884  677888999 99999999985 1110                     01122 4567899999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEcCCCC-Cc-cCCcccCCCCCcceeeccCc
Q 012027          151 DCGLGEGAIPSDIGNLHSLKTLYLSKNN-FV-TLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       151 ~~~l~~~~lp~~l~~l~~L~~L~Ls~n~-~~-~lp~~i~~l~~L~~L~l~~c  200 (472)
                      +|....+..+..+..+++|+.|+|++|. +. .....+..+++|+.|++++|
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            9983334567788999999999999996 22 11125788999999999999

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=9.9e-17  Score=169.99  Aligned_cols=182  Identities=20%  Similarity=0.233  Sum_probs=149.4

Q ss_pred             EEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccC
Q 012027            6 ELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAI   85 (472)
Q Consensus         6 ~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i   85 (472)
                      .+.+..+.+..+.. +..|++|+.|++++|. +..+|. +..|++|+.|+|++|.. ..++. +..+++|+.|+|++|.+
T Consensus        25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC
T ss_pred             HHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC
Confidence            34455556665544 6789999999999976 777874 88999999999999864 44555 88999999999999999


Q ss_pred             CCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCC
Q 012027           86 RCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGN  165 (472)
Q Consensus        86 ~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~  165 (472)
                      ..+| .+..+++|+.|+|++|....                        ++.+..+++|+.|+|++|.+..  + ..++.
T Consensus       100 ~~l~-~l~~l~~L~~L~Ls~N~l~~------------------------l~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~  151 (605)
T 1m9s_A          100 KDLS-SLKDLKKLKSLSLEHNGISD------------------------INGLVHLPQLESLYLGNNKITD--I-TVLSR  151 (605)
T ss_dssp             CCCT-TSTTCTTCCEEECTTSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--C-GGGGS
T ss_pred             CCCh-hhccCCCCCEEEecCCCCCC------------------------CccccCCCccCEEECCCCccCC--c-hhhcc
Confidence            9887 68999999999999987322                        3447788999999999999974  4 67899


Q ss_pred             CCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccCC
Q 012027          166 LHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGCA  222 (472)
Q Consensus       166 l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c~  222 (472)
                      +++|+.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+  .++|+.|++.+|.
T Consensus       152 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred             cCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence            9999999999999998876 9999999999999985 4445543  2588999988763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=2.3e-15  Score=149.14  Aligned_cols=198  Identities=17%  Similarity=0.140  Sum_probs=155.1

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCE-Eeee
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEE-LDIS   81 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~-L~L~   81 (472)
                      +.++.+++++++||..+  .++|++|+|++|+ ++.+|. .+.+|++|++|+|++|..++.+|. .+.++++|++ +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56778889999999876  4789999999976 888986 578999999999999988777764 5688888876 5666


Q ss_pred             CccCCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           82 GTAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        82 ~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      +|.+..+ |..+..+++|++|++++|.....                      ....+.....+..|++.+++-. ..+|
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~~~l~~l~l~~~~~i-~~l~  145 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHL----------------------PDVHKIHSLQKVLLDIQDNINI-HTIE  145 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSC----------------------CCCTTCCBSSCEEEEEESCTTC-CEEC
T ss_pred             CCcccccCchhhhhccccccccccccccccC----------------------Cchhhcccchhhhhhhcccccc-cccc
Confidence            7899987 45678999999999999873221                      0111344556788888775432 2344


Q ss_pred             C-CCCCC-CCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC----CCCccEEEEccCCCcccccc
Q 012027          161 S-DIGNL-HSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL----PPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       161 ~-~l~~l-~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l----p~~L~~L~~~~c~sL~~~~~  229 (472)
                      . .+..+ ..++.|+|++|+++.+|..+....+|+.|++.++..++.+|.-    .++|+.|+++++ .|+.++.
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~  219 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS  219 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS
T ss_pred             ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh
Confidence            3 45555 4689999999999999999888999999999999999999852    368899999987 5777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=3.3e-16  Score=142.23  Aligned_cols=150  Identities=19%  Similarity=0.254  Sum_probs=94.9

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ++|++|+++++.|..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            45677777777777666 4667777777777776 344444 46667777777777766555566666777777777777


Q ss_pred             CccCCC-CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           82 GTAIRC-PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        82 ~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      +|.+.. .|..+..+++|+.|++++|....                       .++.+..+++|+.|++++|.+.+  ++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-----------------------~~~~l~~l~~L~~L~l~~n~i~~--~~  175 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-----------------------DIMPLKTLPELKSLNIQFDGVHD--YR  175 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-----------------------CCGGGGGCSSCCEEECTTBCCCC--CT
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-----------------------ccHhhcCCCCCCEEECCCCCCcC--hH
Confidence            777663 55566677777777777665222                       12335566667777777776653  44


Q ss_pred             CCCCCCCCCCEEEcCCCCCc
Q 012027          161 SDIGNLHSLKTLYLSKNNFV  180 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~  180 (472)
                       .+..+++|+.|++++|++.
T Consensus       176 -~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -TGGGCSSCCEEEECBC---
T ss_pred             -HhccCCCCCEEEeeCcccC
Confidence             5666777777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.65  E-value=4.4e-15  Score=157.62  Aligned_cols=195  Identities=24%  Similarity=0.276  Sum_probs=112.7

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ++|++|+|++|.|+.+|.   .+++|++|+|++|. +..+|.   .+++|++|++++|. +..+|..   +++|++|+++
T Consensus        81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls  149 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVS  149 (622)
T ss_dssp             TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECC
T ss_pred             CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECc
Confidence            344444444444444443   34444444444433 333443   23445555555542 3334442   3677777777


Q ss_pred             CccCCCCCccccCC-----------------CCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCc
Q 012027           82 GTAIRCPPSSIFLM-----------------KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSL  144 (472)
Q Consensus        82 ~~~i~~lp~~i~~l-----------------~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L  144 (472)
                      +|.+..+|..+.++                 ++|+.|++++|.... .+. .......+....+.+.  .+|.  .+++|
T Consensus       150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~--~l~~--~~~~L  223 (622)
T 3g06_A          150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLT--SLPA--LPSGL  223 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCS--SCCC--CCTTC
T ss_pred             CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC-ccchhhEEECcCCccc--ccCC--CCCCC
Confidence            77777665433222                 556666666665322 111 1112222333333332  2222  24789


Q ss_pred             CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027          145 TKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC  221 (472)
Q Consensus       145 ~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c  221 (472)
                      +.|++++|.+..  +|   ..+++|+.|+|++|.++.+|.   .+++|+.|++++|. +..+|.-   .++|+.|++.++
T Consensus       224 ~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          224 KELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSC
T ss_pred             CEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCC
Confidence            999999999864  77   566899999999999999997   67899999999985 4466532   245666766665


Q ss_pred             C
Q 012027          222 A  222 (472)
Q Consensus       222 ~  222 (472)
                      +
T Consensus       295 ~  295 (622)
T 3g06_A          295 P  295 (622)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=3.4e-15  Score=136.54  Aligned_cols=172  Identities=19%  Similarity=0.153  Sum_probs=123.6

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      +.++.+++.++++|..+  .++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45677778888888644  5688999999876 555554 4678888999999887544333345678888999999988


Q ss_pred             cCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCC
Q 012027           84 AIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        84 ~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      .+..+|.. +..+++|+.|++++|....                       ..+. +..+++|+.|++++|.+.. ..+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~l~~-~~~~  142 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQS-----------------------LPDGVFDKLTQLKDLRLYQNQLKS-VPDG  142 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcc-----------------------cCHhHhccCCcCCEEECCCCccce-eCHH
Confidence            88877765 5788888888888875321                       1122 5677888888888888763 3334


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC
Q 012027          162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL  209 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l  209 (472)
                      .+..+++|+.|+|++|.+.      ..+++|+.|++..+..-..+|..
T Consensus       143 ~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             HhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeecc
Confidence            4778888888888888654      34567888888887766666643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=4.7e-15  Score=137.09  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=56.8

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      +.++++++.++++|..+.  ++|+.|+|++|. +..+|. .+..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            345566666666665443  566666666654 444443 4566666666666665544444556666666666666666


Q ss_pred             cCCCCCcc-ccCCCCCcEEEecCCC
Q 012027           84 AIRCPPSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        84 ~i~~lp~~-i~~l~~L~~L~L~~~~  107 (472)
                      .+..+|.. +..+++|+.|+|++|.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCC
Confidence            66655543 2445555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=5.8e-18  Score=178.31  Aligned_cols=173  Identities=18%  Similarity=0.177  Sum_probs=139.8

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCc-------------CCCccCcccCCCCCCCEEE-ccCCCCchhhhh
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCK-------------NLVRLPSNINSLKSLKTLN-LLGCFKFENLLE   67 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~-------------~l~~lp~~i~~L~~L~~L~-Ls~c~~l~~lp~   67 (472)
                      ++|+.|+|++|.|+.+|.+|++|++|+.|++++|.             .....|..++.+++|+.|+ ++.+ .+..++.
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~~  427 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLRS  427 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhhh
Confidence            57888999999999999999999999999987654             3445667778888888888 4432 2222221


Q ss_pred             ------hhCC--CCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-C
Q 012027           68 ------TVGQ--VESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-L  138 (472)
Q Consensus        68 ------~l~~--l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l  138 (472)
                            .+..  ...|+.|++++|.++.+|. ++.+++|+.|+|++|...                        .+|. +
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~------------------------~lp~~~  482 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR------------------------ALPPAL  482 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC------------------------CCCGGG
T ss_pred             hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc------------------------ccchhh
Confidence                  1111  1359999999999999997 999999999999998632                        2333 7


Q ss_pred             CCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC--CcccCCCCCcceeeccCcccc
Q 012027          139 SGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL--PASINCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       139 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l--p~~i~~l~~L~~L~l~~c~~L  203 (472)
                      ..+++|+.|+|++|.+..  +| .++.+++|+.|+|++|.++.+  |..++.+++|+.|+|++|+.-
T Consensus       483 ~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             hcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            889999999999999974  78 899999999999999999988  899999999999999998743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=2.9e-15  Score=137.03  Aligned_cols=158  Identities=23%  Similarity=0.209  Sum_probs=130.3

Q ss_pred             CCccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      ++|++|+|+++.++.++.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            5799999999999988765 6899999999999986 666665 468899999999999865544445578999999999


Q ss_pred             eeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCC
Q 012027           80 ISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEG  157 (472)
Q Consensus        80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~  157 (472)
                      +++|.+..+|.. +..+++|+.|++++|....                       ..+. +..+++|+.|++++|.+.  
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~~~--  161 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-----------------------VPDGVFDRLTSLQYIWLHDNPWD--  161 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSCCBC--
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccce-----------------------eCHHHhccCCCccEEEecCCCee--
Confidence            999999988765 6889999999999986322                       1222 678899999999999764  


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCC
Q 012027          158 AIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFN  191 (472)
Q Consensus       158 ~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~  191 (472)
                            +.+++|+.|+++.|+++ .+|.+++.++.
T Consensus       162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                  45678999999999998 89988877655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=9e-15  Score=136.03  Aligned_cols=147  Identities=17%  Similarity=0.171  Sum_probs=109.5

Q ss_pred             CcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecC
Q 012027           27 LVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRG  105 (472)
Q Consensus        27 L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~  105 (472)
                      .+.++.+++ .+..+|..+.  ++|++|+|++|......|..+..+++|++|+|++|.+..+|.. +..+++|+.|+|++
T Consensus        21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345666653 3677776553  7788888888766555577777888888888888888877654 46788888888887


Q ss_pred             CCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc
Q 012027          106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA  184 (472)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~  184 (472)
                      |....                       ..+. +..+++|+.|+|++|.+.  .+|..+..+++|+.|+|++|.++.+|.
T Consensus        98 N~l~~-----------------------l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           98 NQLTV-----------------------LPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             CcCCc-----------------------cChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCH
Confidence            75321                       1122 567888888888888886  488888888999999999999888774


Q ss_pred             -ccCCCCCcceeeccCcc
Q 012027          185 -SINCLFNLEKLKLEDCK  201 (472)
Q Consensus       185 -~i~~l~~L~~L~l~~c~  201 (472)
                       .+..+++|+.|++++|+
T Consensus       153 ~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTTCTTCCEEECTTSC
T ss_pred             HHHhCCCCCCEEEeeCCC
Confidence             47788888888888875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=2.3e-15  Score=160.30  Aligned_cols=103  Identities=23%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEe
Q 012027            3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELD   79 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~   79 (472)
                      ++++|+|++|+|+.+|+ +|+++++|++|+|++|. +..+|+ ++.+|++|++|+|++|. +..+| ..++++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence            34455555555554442 34455555555555443 333332 34445555555555543 22232 2344455555555


Q ss_pred             eeCccCCCCCc-cccCCCCCcEEEecCCC
Q 012027           80 ISGTAIRCPPS-SIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~  107 (472)
                      +++|.++.+|. .++++++|++|++++|.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCc
Confidence            55555444433 24445555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=134.21  Aligned_cols=100  Identities=14%  Similarity=0.163  Sum_probs=52.4

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCcc-C-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL-P-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~l-p-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +.++++++.++++|..+.  ..+++|+|++|. +..+ | ..+..+++|++|+|++|......+..+..+++|++|+|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            355666666666665442  344566666654 4444 2 2245566666666666543332333555566666666666


Q ss_pred             ccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027           83 TAIRCPPSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        83 ~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (472)
                      |.+..++.. +..+++|++|++++|.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCc
Confidence            665554432 4445555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=5.3e-15  Score=147.24  Aligned_cols=169  Identities=23%  Similarity=0.210  Sum_probs=85.1

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcc-cC-CCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSN-IN-SLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~-i~-~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +.++++++.++.+|..+.  ..++.|+|++|. +..++.. +. ++++|++|+|++|......+..+..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            345566666666665432  345666666654 4444432 33 566666666666543333334566666666666666


Q ss_pred             ccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           83 TAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        83 ~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      |.+..++. .+..+++|+.|+|++|....                      .....+..+++|+.|+|++|.+..  +|.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~----------------------~~~~~~~~l~~L~~L~L~~N~l~~--l~~  153 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVV----------------------VDRNAFEDMAQLQKLYLSQNQISR--FPV  153 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCE----------------------ECTTTTTTCTTCCEEECCSSCCCS--CCG
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccE----------------------ECHHHhCCcccCCEEECCCCcCCe--eCH
Confidence            66665543 34555666666665554211                      011124455555555555555542  443


Q ss_pred             CC----CCCCCCCEEEcCCCCCccCCc-ccCCCCC--cceeeccCc
Q 012027          162 DI----GNLHSLKTLYLSKNNFVTLPA-SINCLFN--LEKLKLEDC  200 (472)
Q Consensus       162 ~l----~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~--L~~L~l~~c  200 (472)
                      .+    ..+++|+.|+|++|.++.+|. .+..++.  |+.|+|++|
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            32    345555555555555555542 2333333  244444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=4.1e-15  Score=141.35  Aligned_cols=151  Identities=21%  Similarity=0.302  Sum_probs=129.5

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |++|++|++++|.|+.++ .++.+++|++|+|++|. +..+|. +.++++|++|++++|. +..+|....  ++|++|++
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L  113 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFL  113 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEEC
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEc
Confidence            468999999999999998 69999999999999986 777877 8999999999999975 555666443  89999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+..++ .+..+++|+.|++++|....                        ++.+..+++|+.|++++|.+.+  + 
T Consensus       114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~------------------------~~~l~~l~~L~~L~L~~N~i~~--~-  165 (263)
T 1xeu_A          114 DNNELRDTD-SLIHLKNLEILSIRNNKLKS------------------------IVMLGFLSKLEVLDLHGNEITN--T-  165 (263)
T ss_dssp             CSSCCSBSG-GGTTCTTCCEEECTTSCCCB------------------------CGGGGGCTTCCEEECTTSCCCB--C-
T ss_pred             cCCccCCCh-hhcCcccccEEECCCCcCCC------------------------ChHHccCCCCCEEECCCCcCcc--h-
Confidence            999999986 58999999999999987322                        2346778999999999999974  4 


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPAS  185 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~  185 (472)
                      ..+..+++|+.|++++|.+...|..
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             HHhccCCCCCEEeCCCCcccCCccc
Confidence            6789999999999999999877643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=9.4e-17  Score=161.27  Aligned_cols=198  Identities=15%  Similarity=0.195  Sum_probs=113.1

Q ss_pred             CCccEEEeeCCCCee-----ccccccCCcCCcEEEeecCc--CC-CccCccc-------CCCCCCCEEEccCCCCch---
Q 012027            2 ECLRELLLDKTDIKE-----MPLSIELLSGLVQLTLKGCK--NL-VRLPSNI-------NSLKSLKTLNLLGCFKFE---   63 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~-----lp~si~~L~~L~~L~L~~c~--~l-~~lp~~i-------~~L~~L~~L~Ls~c~~l~---   63 (472)
                      ++|++|+|++|.|..     ++..+..+++|++|+|++|.  .+ ..+|.++       ..+++|++|+|++|....   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            456666666666552     23335566666666666652  11 1223332       456666666666665444   


Q ss_pred             -hhhhhhCCCCCCCEEeeeCccCCC-----CCccccCC---------CCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027           64 -NLLETVGQVESLEELDISGTAIRC-----PPSSIFLM---------KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS  128 (472)
Q Consensus        64 -~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~  128 (472)
                       .+|..+..+++|++|+|++|.+..     ++..+..+         ++|+.|++++|....                  
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------------------  173 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------------------  173 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------------------
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------------------
Confidence             356666666666666666666542     22223333         666666666665211                  


Q ss_pred             CCCcCCCC----CCCCCCCcCEEeccCCCCCCC----CCCCCCCCCCCCCEEEcCCCCC-----ccCCcccCCCCCccee
Q 012027          129 DLGALMLP----SLSGLGSLTKLDLSDCGLGEG----AIPSDIGNLHSLKTLYLSKNNF-----VTLPASINCLFNLEKL  195 (472)
Q Consensus       129 ~~~~~~l~----~l~~l~~L~~L~L~~~~l~~~----~lp~~l~~l~~L~~L~Ls~n~~-----~~lp~~i~~l~~L~~L  195 (472)
                          ..++    .+..+++|+.|++++|.+...    .+|..+..+++|+.|+|++|.+     ..+|..+..+++|+.|
T Consensus       174 ----~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          174 ----GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             ----GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             ----HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence                0111    134556777888877776421    2344667777788888888777     4567777777778888


Q ss_pred             eccCcccccc----CCC-C----CCCccEEEEccC
Q 012027          196 KLEDCKRLQS----LPQ-L----PPNVEKVRVNGC  221 (472)
Q Consensus       196 ~l~~c~~L~~----lp~-l----p~~L~~L~~~~c  221 (472)
                      +|++|..-..    ++. +    .++|+.|++.+|
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence            8877763221    121 1    345666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.57  E-value=2.6e-16  Score=158.10  Aligned_cols=203  Identities=15%  Similarity=0.118  Sum_probs=152.4

Q ss_pred             CCCccEEEeeCCCCe----eccccc-------cCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh-
Q 012027            1 MECLRELLLDKTDIK----EMPLSI-------ELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN-   64 (472)
Q Consensus         1 l~~L~~L~L~~~~l~----~lp~si-------~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~-   64 (472)
                      +++|++|+|+++.+.    .+|..+       ..+++|++|+|++|....    .+|..+..+++|++|+|++|..... 
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            478999999997554    334444       789999999999987444    3788888999999999999976433 


Q ss_pred             ---hhhhhCCC---------CCCCEEeeeCccCC--CCC---ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhccc
Q 012027           65 ---LLETVGQV---------ESLEELDISGTAIR--CPP---SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRS  127 (472)
Q Consensus        65 ---lp~~l~~l---------~~L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~  127 (472)
                         ++..+..+         ++|++|++++|.+.  .+|   ..+..+++|+.|++++|.....          .+    
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----------g~----  204 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE----------GI----  204 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH----------HH----
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh----------HH----
Confidence               44445445         89999999999987  445   4677899999999999863210          00    


Q ss_pred             CCCCcCCCC-CCCCCCCcCEEeccCCCCCC---CCCCCCCCCCCCCCEEEcCCCCCcc-----CCcccC--CCCCcceee
Q 012027          128 SDLGALMLP-SLSGLGSLTKLDLSDCGLGE---GAIPSDIGNLHSLKTLYLSKNNFVT-----LPASIN--CLFNLEKLK  196 (472)
Q Consensus       128 ~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~---~~lp~~l~~l~~L~~L~Ls~n~~~~-----lp~~i~--~l~~L~~L~  196 (472)
                          ....+ .+..+++|+.|+|++|.+..   ..+|..+..+++|+.|+|++|.+..     +|..+.  .+++|+.|+
T Consensus       205 ----~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~  280 (386)
T 2ca6_A          205 ----EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  280 (386)
T ss_dssp             ----HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             ----HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence                00122 46778899999999998841   2467788899999999999999974     567774  499999999


Q ss_pred             ccCccccc----cCCCC----CCCccEEEEccC
Q 012027          197 LEDCKRLQ----SLPQL----PPNVEKVRVNGC  221 (472)
Q Consensus       197 l~~c~~L~----~lp~l----p~~L~~L~~~~c  221 (472)
                      |++|..-.    .+|..    .++|+.|++.+|
T Consensus       281 L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            99997544    25532    367788877775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.57  E-value=2.3e-14  Score=152.55  Aligned_cols=176  Identities=26%  Similarity=0.292  Sum_probs=108.6

Q ss_pred             cCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCC-CccccCCCCCc
Q 012027           22 ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCP-PSSIFLMKNLK   99 (472)
Q Consensus        22 ~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~   99 (472)
                      ..+.+|++|++..+. ...++..+..+++|+.+++.++......+ ..+..+.+|+.++++.|.+..+ |..+..+++|+
T Consensus       394 ~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~  472 (635)
T 4g8a_A          394 FGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  472 (635)
T ss_dssp             HSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             hhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence            334444444444433 22233334444555555554443332222 2334455555555555555422 33344455555


Q ss_pred             EEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 012027          100 TLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN  178 (472)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~  178 (472)
                      .|++++|..                      .....|. +..+++|+.|+|++|++. +..|..|+.+++|++|+|++|+
T Consensus       473 ~L~Ls~N~~----------------------~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          473 VLKMAGNSF----------------------QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EEECTTCEE----------------------GGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred             hhhhhhccc----------------------ccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCCCc
Confidence            555555431                      1112333 788999999999999996 4567889999999999999999


Q ss_pred             CccCCc-ccCCCCCcceeeccCccccccCCC----CCCCccEEEEccC
Q 012027          179 FVTLPA-SINCLFNLEKLKLEDCKRLQSLPQ----LPPNVEKVRVNGC  221 (472)
Q Consensus       179 ~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~----lp~~L~~L~~~~c  221 (472)
                      ++.+|. .+..+++|+.|+|++|+.....|+    +|++|+.|+++++
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence            998754 688999999999999875544443    4567888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=3.9e-14  Score=130.90  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=120.9

Q ss_pred             cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCccCCCCCc-cccCCCCCcEEEecC
Q 012027           28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGTAIRCPPS-SIFLMKNLKTLSFRG  105 (472)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~  105 (472)
                      +.++++++. ++.+|..+.  ..+++|+|++|......| ..++.+++|++|++++|.++.++. .+.++++|+.|++++
T Consensus        14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            588998865 788998664  467899999976544323 447899999999999999998765 789999999999999


Q ss_pred             CCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-C
Q 012027          106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-P  183 (472)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p  183 (472)
                      |....                       ..+. +..+++|++|+|++|.+. +..|..+..+++|+.|+|++|.++.+ |
T Consensus        91 N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           91 NRLEN-----------------------VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             SCCCC-----------------------CCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CccCc-----------------------cCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECH
Confidence            87432                       1222 778899999999999997 45578899999999999999999977 7


Q ss_pred             cccCCCCCcceeeccCcc
Q 012027          184 ASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       184 ~~i~~l~~L~~L~l~~c~  201 (472)
                      ..+..+++|+.|++++|+
T Consensus       147 ~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTTTTCTTCCEEECCSCC
T ss_pred             HHhcCCCCCCEEEecCcC
Confidence            788999999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.3e-14  Score=127.91  Aligned_cols=84  Identities=18%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             cCCcCCcEEEeecCcCC-CccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCC-CCccccCCCCCc
Q 012027           22 ELLSGLVQLTLKGCKNL-VRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC-PPSSIFLMKNLK   99 (472)
Q Consensus        22 ~~L~~L~~L~L~~c~~l-~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~   99 (472)
                      ...++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. +|..+.++++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34567788888877632 2677767777888888888776 4444 667777888888888888776 666666677888


Q ss_pred             EEEecCCC
Q 012027          100 TLSFRGCN  107 (472)
Q Consensus       100 ~L~L~~~~  107 (472)
                      .|++++|.
T Consensus        99 ~L~Ls~N~  106 (168)
T 2ell_A           99 HLNLSGNK  106 (168)
T ss_dssp             EEECBSSS
T ss_pred             EEeccCCc
Confidence            88777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=5.6e-15  Score=160.15  Aligned_cols=190  Identities=16%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeec----CcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKG----CKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~----c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      .++.|+|.++.+..++..+.....|..+.+..    +..+...|..+..+.+|++|+|++|.. ..+|..+..+++|++|
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRL  252 (727)
T ss_dssp             ------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCC
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEE
Confidence            46778888888887777665555566655543    223445677788999999999999764 5788888899999999


Q ss_pred             eeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCC
Q 012027           79 DISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA  158 (472)
Q Consensus        79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~  158 (472)
                      +|++|.+..+|..+++|++|+.|+|++|....                       ....+..+++|++|+|++|.+.  .
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~~~~l~~L~~L~L~~N~l~--~  307 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-----------------------LPAELGSCFQLKYFYFFDNMVT--T  307 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-----------------------CCSSGGGGTTCSEEECCSSCCC--C
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-----------------------cChhhcCCCCCCEEECCCCCCC--c
Confidence            99999999999999999999999999987321                       1223788899999999999985  5


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCC-CcceeeccCccccccCCCCCCCccEEEEccC
Q 012027          159 IPSDIGNLHSLKTLYLSKNNFV-TLPASINCLF-NLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       159 lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~-~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c  221 (472)
                      +|..|+.+++|+.|+|++|.++ .+|..+..+. .+..|++++|....   .+|..+..|++.++
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~---~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI---PLPHERRFIEINTD  369 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC---------
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC---cCccccceeEeecc
Confidence            8999999999999999999998 4454443332 12235666665433   23456666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.50  E-value=2.2e-13  Score=142.91  Aligned_cols=158  Identities=23%  Similarity=0.275  Sum_probs=112.9

Q ss_pred             CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecC
Q 012027           26 GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRG  105 (472)
Q Consensus        26 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~  105 (472)
                      +|+.|+|++|. +..+|..+  +++|++|+|++|. +..+|   +.+++|++|++++|.++.+|. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence            89999999976 77799877  4899999999975 55788   568999999999999999998 665  999999999


Q ss_pred             CCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc
Q 012027          106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS  185 (472)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~  185 (472)
                      |....                        +|.  .+++|+.|++++|.+..  +|.   .+++|+.|+|++|.++.+|. 
T Consensus       130 N~l~~------------------------lp~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-  177 (571)
T 3cvr_A          130 NQLTM------------------------LPE--LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-  177 (571)
T ss_dssp             SCCSC------------------------CCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred             CcCCC------------------------CCC--cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-
Confidence            87322                        222  45667777777777653  555   45677777777777777766 


Q ss_pred             cCCCCCcceeeccCccccccCCCCCCCc-------cEEEEccCCCcccccc
Q 012027          186 INCLFNLEKLKLEDCKRLQSLPQLPPNV-------EKVRVNGCASLVTLLG  229 (472)
Q Consensus       186 i~~l~~L~~L~l~~c~~L~~lp~lp~~L-------~~L~~~~c~sL~~~~~  229 (472)
                      +.  ++|+.|+|++|. +..+|.++.+|       +.|+++++ .++.++.
T Consensus       178 l~--~~L~~L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~  224 (571)
T 3cvr_A          178 LP--ESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN-RITHIPE  224 (571)
T ss_dssp             CC--TTCCEEECCSSC-CSSCCCCC--------CCEEEECCSS-CCCCCCG
T ss_pred             hh--CCCCEEECcCCC-CCchhhHHHhhhcccccceEEecCCC-cceecCH
Confidence            54  677777777763 44666655566       66666665 3444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=3.1e-13  Score=124.77  Aligned_cols=105  Identities=24%  Similarity=0.300  Sum_probs=84.2

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~   79 (472)
                      ++|++|+|++|.|+.+++ .+..+++|++|+|++|......|..+.++++|++|+|++|.. ..+|. .+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEE
Confidence            479999999999999876 689999999999999884444578899999999999999764 45654 468899999999


Q ss_pred             eeCccCCCCC-ccccCCCCCcEEEecCCC
Q 012027           80 ISGTAIRCPP-SSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        80 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~  107 (472)
                      |++|.+..++ ..+..+++|+.|+|++|.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence            9999999774 445555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=4.1e-13  Score=124.72  Aligned_cols=149  Identities=23%  Similarity=0.208  Sum_probs=124.5

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~   83 (472)
                      +.++.+++.+..+|..+.  ++|++|+|++|......|..+..+++|++|+|++|.. ..+| ..+..+++|++|+|++|
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence            568888889999997664  8999999999885555577889999999999999865 5555 55789999999999999


Q ss_pred             cCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC-C
Q 012027           84 AIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP-S  161 (472)
Q Consensus        84 ~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp-~  161 (472)
                      .++.+|.. +..+++|+.|++++|....                       ....+..+++|+.|+|++|.+..  +| .
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~~~~l~~L~~L~L~~N~l~~--~~~~  153 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTE-----------------------LPRGIERLTHLTHLALDQNQLKS--IPHG  153 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCS-----------------------CCTTGGGCTTCSEEECCSSCCCC--CCTT
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccc-----------------------cCcccccCCCCCEEECCCCcCCc--cCHH
Confidence            99988765 5789999999999987321                       12236788999999999999988  55 4


Q ss_pred             CCCCCCCCCEEEcCCCCCcc
Q 012027          162 DIGNLHSLKTLYLSKNNFVT  181 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~  181 (472)
                      .+..+++|+.|+|++|.+..
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCT
T ss_pred             HHhCCCCCCEEEeeCCCccC
Confidence            58899999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.47  E-value=1.1e-14  Score=144.99  Aligned_cols=200  Identities=17%  Similarity=0.152  Sum_probs=119.3

Q ss_pred             CccEEEeeCCCCeecc-----ccccCCc-CCcEEEeecCcCCCccCcccCCC-----CCCCEEEccCCCCchhhhh----
Q 012027            3 CLRELLLDKTDIKEMP-----LSIELLS-GLVQLTLKGCKNLVRLPSNINSL-----KSLKTLNLLGCFKFENLLE----   67 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp-----~si~~L~-~L~~L~L~~c~~l~~lp~~i~~L-----~~L~~L~Ls~c~~l~~lp~----   67 (472)
                      +|++|+|++|.|..++     ..+..++ +|++|+|++|......+..+..+     ++|++|+|++|......+.    
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            4778888888777655     4466777 78888888876333334444443     7788888888764433333    


Q ss_pred             hhCCC-CCCCEEeeeCccCCCCCcc-----ccC-CCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CC
Q 012027           68 TVGQV-ESLEELDISGTAIRCPPSS-----IFL-MKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LS  139 (472)
Q Consensus        68 ~l~~l-~~L~~L~L~~~~i~~lp~~-----i~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~  139 (472)
                      .+..+ ++|++|++++|.+...+..     +.. .++|++|++++|.......                   ..++. +.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-------------------~~l~~~l~  163 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-------------------DELIQILA  163 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-------------------HHHHHHHH
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-------------------HHHHHHHh
Confidence            23344 7788888888877755431     233 2578888887775221000                   00001 22


Q ss_pred             CCC-CcCEEeccCCCCCCCCCCC----CCCCC-CCCCEEEcCCCCCcc-----CCcccCCC-CCcceeeccCcccccc--
Q 012027          140 GLG-SLTKLDLSDCGLGEGAIPS----DIGNL-HSLKTLYLSKNNFVT-----LPASINCL-FNLEKLKLEDCKRLQS--  205 (472)
Q Consensus       140 ~l~-~L~~L~L~~~~l~~~~lp~----~l~~l-~~L~~L~Ls~n~~~~-----lp~~i~~l-~~L~~L~l~~c~~L~~--  205 (472)
                      .++ +|++|+|++|.+.+ ..+.    .+..+ ++|+.|+|++|.+..     ++..+..+ ++|+.|++++|..-..  
T Consensus       164 ~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             TSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             cCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            333 78888888887752 2222    23334 578888888888775     66666553 4788888888753221  


Q ss_pred             -----CCCCCCCccEEEEccCC
Q 012027          206 -----LPQLPPNVEKVRVNGCA  222 (472)
Q Consensus       206 -----lp~lp~~L~~L~~~~c~  222 (472)
                           +-.-.+.|+.|++++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCC
Confidence                 11223567777777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.2e-13  Score=121.75  Aligned_cols=129  Identities=22%  Similarity=0.193  Sum_probs=108.3

Q ss_pred             CCCCCCEEEccCCCCc-hhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhc
Q 012027           47 SLKSLKTLNLLGCFKF-ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMR  125 (472)
Q Consensus        47 ~L~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~  125 (472)
                      ..++|++|++++|... +.+|..+..+++|++|++++|.+..+ ..+..+++|+.|++++|....               
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~---------------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG---------------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch---------------
Confidence            4578999999998754 47888888999999999999999988 778899999999999987432               


Q ss_pred             ccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC--CCCCCCCCCCEEEcCCCCCccCCc----ccCCCCCcceeecc
Q 012027          126 RSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP--SDIGNLHSLKTLYLSKNNFVTLPA----SINCLFNLEKLKLE  198 (472)
Q Consensus       126 ~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp--~~l~~l~~L~~L~Ls~n~~~~lp~----~i~~l~~L~~L~l~  198 (472)
                              .+|. +..+++|+.|++++|.+..  +|  ..+..+++|+.|++++|.++.+|.    .+..+++|+.|+++
T Consensus        86 --------~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           86 --------GLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             --------CCCHHHHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             --------HHHHHHhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence                    1333 4458899999999999864  54  678899999999999999998887    78899999999999


Q ss_pred             Ccc
Q 012027          199 DCK  201 (472)
Q Consensus       199 ~c~  201 (472)
                      +|.
T Consensus       156 ~n~  158 (168)
T 2ell_A          156 DRE  158 (168)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=2.8e-15  Score=157.85  Aligned_cols=154  Identities=17%  Similarity=0.171  Sum_probs=121.4

Q ss_pred             eccccccCCcCCcEEE-eecCcCCCccCc------ccCC--CCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCC
Q 012027           16 EMPLSIELLSGLVQLT-LKGCKNLVRLPS------NINS--LKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus        16 ~lp~si~~L~~L~~L~-L~~c~~l~~lp~------~i~~--L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      .+|..++.+++|+.|+ ++.+. +..++.      .+..  ...|++|+|++|. +..+|. ++.+++|++|+|++|.++
T Consensus       400 ~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~  476 (567)
T 1dce_A          400 YEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR  476 (567)
T ss_dssp             GHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC
T ss_pred             CCHHHHHHHHhcccCcchhhcc-cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc
Confidence            4566788899999998 44432 222221      0111  1259999999974 566887 999999999999999999


Q ss_pred             CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC-CCCCCC
Q 012027           87 CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI-PSDIGN  165 (472)
Q Consensus        87 ~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l-p~~l~~  165 (472)
                      .+|..++.+++|+.|+|++|...                        .+|.+..+++|+.|+|++|.+.. .. |..++.
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~l~------------------------~lp~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~  531 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNALE------------------------NVDGVANLPRLQELLLCNNRLQQ-SAAIQPLVS  531 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCC------------------------CCGGGTTCSSCCEEECCSSCCCS-SSTTGGGGG
T ss_pred             ccchhhhcCCCCCEEECCCCCCC------------------------CCcccCCCCCCcEEECCCCCCCC-CCCcHHHhc
Confidence            99999999999999999998632                        24568889999999999999974 33 899999


Q ss_pred             CCCCCEEEcCCCCCccCCcccC----CCCCcceeec
Q 012027          166 LHSLKTLYLSKNNFVTLPASIN----CLFNLEKLKL  197 (472)
Q Consensus       166 l~~L~~L~Ls~n~~~~lp~~i~----~l~~L~~L~l  197 (472)
                      +++|+.|+|++|.++.+|..+.    .+++|+.|++
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999999998886543    3778888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=8.5e-13  Score=131.22  Aligned_cols=153  Identities=22%  Similarity=0.204  Sum_probs=122.4

Q ss_pred             cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhC-CCCCCCEEeeeCccCCCCC-ccccCCCCCcEEEecC
Q 012027           28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVG-QVESLEELDISGTAIRCPP-SSIFLMKNLKTLSFRG  105 (472)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~  105 (472)
                      +.++++++. +..+|..+.  ..+++|+|++|......+..+. .+++|++|+|++|.|..++ ..+.++++|+.|+|++
T Consensus        21 ~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            678888854 888998664  5699999999865444445566 8999999999999999876 4689999999999999


Q ss_pred             CCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc
Q 012027          106 CNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS  185 (472)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~  185 (472)
                      |....                      .....+..+++|+.|+|++|.+. ...|..+..+++|+.|+|++|.++.+|..
T Consensus        98 N~l~~----------------------~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           98 NHLHT----------------------LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             SCCCE----------------------ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             CcCCc----------------------CCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            87322                      01123778999999999999996 34577899999999999999999999987


Q ss_pred             c----CCCCCcceeeccCccccccCC
Q 012027          186 I----NCLFNLEKLKLEDCKRLQSLP  207 (472)
Q Consensus       186 i----~~l~~L~~L~l~~c~~L~~lp  207 (472)
                      +    ..+++|+.|+|++|+ ++.+|
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~-l~~l~  179 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNK-LKKLP  179 (361)
T ss_dssp             GTC----CTTCCEEECCSSC-CCCCC
T ss_pred             HhcCcccCCcCCEEECCCCC-CCccC
Confidence            6    679999999999985 44444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=1.3e-14  Score=157.35  Aligned_cols=156  Identities=19%  Similarity=0.122  Sum_probs=112.9

Q ss_pred             CCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc
Q 012027           12 TDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS   91 (472)
Q Consensus        12 ~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~   91 (472)
                      +.+...+..+..++.|+.|+|++|. +..+|..+.++++|++|+|++|.. ..+|..++++++|++|+|++|.|..+|..
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~  288 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAE  288 (727)
T ss_dssp             -----------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred             cceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChh
Confidence            3344456678999999999999987 668998888999999999999864 48999999999999999999999999999


Q ss_pred             ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCC-C
Q 012027           92 IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS-L  169 (472)
Q Consensus        92 i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~-L  169 (472)
                      +++|++|++|+|++|...                        .+|. +..+++|+.|+|++|.+. +.+|..+..+.. +
T Consensus       289 ~~~l~~L~~L~L~~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~  343 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVT------------------------TLPWEFGNLCNLQFLGVEGNPLE-KQFLKILTEKSVTG  343 (727)
T ss_dssp             GGGGTTCSEEECCSSCCC------------------------CCCSSTTSCTTCCCEECTTSCCC-SHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEECCCCCCC------------------------ccChhhhcCCCccEEeCCCCccC-CCChHHHhhcchhh
Confidence            999999999999998632                        2333 888999999999999996 556666544322 2


Q ss_pred             CEEEcCCCCCc-cCCcccCCCCCcceeeccCc
Q 012027          170 KTLYLSKNNFV-TLPASINCLFNLEKLKLEDC  200 (472)
Q Consensus       170 ~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c  200 (472)
                      ..|+|++|.++ .+|.      .|+.|+++.+
T Consensus       344 ~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          344 LIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHCCCCCCCCC------C---------
T ss_pred             hHHhhccCcccCcCcc------ccceeEeecc
Confidence            34678888887 4553      4556666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=9.2e-13  Score=118.87  Aligned_cols=126  Identities=20%  Similarity=0.273  Sum_probs=66.0

Q ss_pred             cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh--hhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEec
Q 012027           28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE--TVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFR  104 (472)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~  104 (472)
                      +.++++++. ++.+|..+..  +|++|++++|. +..++.  .++.+++|++|+|++|.++.+ |..+.++++|+.|+++
T Consensus        11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            344444432 4445543322  55555555543 223332  255555556666655555544 4445555555555555


Q ss_pred             CCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 012027          105 GCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV  180 (472)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~  180 (472)
                      +|....                      .....+.++++|+.|+|++|++. +..|..+..+++|+.|+|++|.+.
T Consensus        87 ~N~l~~----------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKE----------------------ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCE----------------------ECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCc----------------------cCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence            544211                      01111445566666666666664 345666777777777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1.2e-13  Score=119.05  Aligned_cols=104  Identities=23%  Similarity=0.308  Sum_probs=94.2

Q ss_pred             CCccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~   79 (472)
                      ++|++|++++|.+.  .+|..++.+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            57999999999998  899988999999999999986 6666 6689999999999999877666899888899999999


Q ss_pred             eeCccCCCCC--ccccCCCCCcEEEecCCC
Q 012027           80 ISGTAIRCPP--SSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        80 L~~~~i~~lp--~~i~~l~~L~~L~L~~~~  107 (472)
                      +++|.+..+|  ..+..+++|+.|++++|.
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999999875  889999999999999986

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=1.1e-13  Score=119.49  Aligned_cols=59  Identities=25%  Similarity=0.218  Sum_probs=40.1

Q ss_pred             CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc----ccCCCCCcceeeccC
Q 012027          141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA----SINCLFNLEKLKLED  199 (472)
Q Consensus       141 l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~----~i~~l~~L~~L~l~~  199 (472)
                      +++|+.|++++|.+.+-..+..++.+++|+.|++++|.++.+|.    .+..+++|+.|++++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            45556666666655421123667778888888888888887775    577788888887753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.41  E-value=2.4e-15  Score=154.23  Aligned_cols=218  Identities=16%  Similarity=0.134  Sum_probs=125.3

Q ss_pred             CCccEEEeeCCCCeecc--ccccCCcCCcEEEeecCcCCC-----ccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCC
Q 012027            2 ECLRELLLDKTDIKEMP--LSIELLSGLVQLTLKGCKNLV-----RLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVE   73 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp--~si~~L~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~   73 (472)
                      ++|++|+|+++.++..+  ..+..+++|++|+|++|. +.     .++..+..+++|++|++++|......+.. ...+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            46777888777776443  225667778888888776 33     45566666777778888776544332322 22333


Q ss_pred             ----CCCEEeeeCccCC-----CCCccccCCCCCcEEEecCCCCCCCCC-------CCCCCcchhhhcccCCCCcCC---
Q 012027           74 ----SLEELDISGTAIR-----CPPSSIFLMKNLKTLSFRGCNGPPSSA-------SCYLPFPINLMRRSSDLGALM---  134 (472)
Q Consensus        74 ----~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~---  134 (472)
                          +|++|++++|.+.     .+|..+..+++|+.|++++|.......       .........+....+.+....   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                5777777777776     346667777777777777765211000       000011112222222222211   


Q ss_pred             CCC-CCCCCCcCEEeccCCCCCCCCCCCCCC-----CCCCCCEEEcCCCCCcc-----CCcccCCCCCcceeeccCcccc
Q 012027          135 LPS-LSGLGSLTKLDLSDCGLGEGAIPSDIG-----NLHSLKTLYLSKNNFVT-----LPASINCLFNLEKLKLEDCKRL  203 (472)
Q Consensus       135 l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~-----~l~~L~~L~Ls~n~~~~-----lp~~i~~l~~L~~L~l~~c~~L  203 (472)
                      ++. +..+++|++|++++|.+.+ ..+..+.     ..++|+.|+|++|.++.     ++..+..+++|+.|++++|..-
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHhhCCCCCEEECcCCCcch-HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence            111 3446778888888877642 1111121     24578888888887774     5666777788888888887421


Q ss_pred             cc----C----CCCCCCccEEEEccC
Q 012027          204 QS----L----PQLPPNVEKVRVNGC  221 (472)
Q Consensus       204 ~~----l----p~lp~~L~~L~~~~c  221 (472)
                      ..    +    ..-.++|+.|++.+|
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCC
Confidence            10    1    112357778887777

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=7.8e-12  Score=112.89  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             CEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCC
Q 012027           52 KTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLG  131 (472)
Q Consensus        52 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~  131 (472)
                      ++++++++ .+..+|..+  .++|++|++++|.++.+|..+.++++|+.|++++|.....                    
T Consensus        13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i--------------------   69 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL--------------------   69 (193)
T ss_dssp             TEEECTTS-CCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC--------------------
T ss_pred             CEEEcCCC-CCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe--------------------
Confidence            45555553 344555443  2456666666666666666666666666666666652210                    


Q ss_pred             cCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCcc
Q 012027          132 ALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCK  201 (472)
Q Consensus       132 ~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~  201 (472)
                        ....+.++++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus        70 --~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           70 --SNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             --CHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence              1122566777777777777775 33445677888888888888888877763 6777888888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.36  E-value=6.6e-14  Score=143.48  Aligned_cols=204  Identities=22%  Similarity=0.159  Sum_probs=134.2

Q ss_pred             CCCccEEEeeCCCCeec-ccccc-----CCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh----h-
Q 012027            1 MECLRELLLDKTDIKEM-PLSIE-----LLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN----L-   65 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~si~-----~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~----l-   65 (472)
                      +++|++|+|++|.+... +..+.     .+++|++|++++|....    .++..+..+++|++|++++|.....    + 
T Consensus       169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  248 (461)
T 1z7x_W          169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC  248 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence            47899999999998743 22232     36699999999987333    2677778899999999999864332    2 


Q ss_pred             hhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCC
Q 012027           66 LETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSG  140 (472)
Q Consensus        66 p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~  140 (472)
                      +.....+++|++|++++|.++.     ++..+.++++|+.|++++|.......       ..+...        +  ...
T Consensus       249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------~~l~~~--------l--~~~  311 (461)
T 1z7x_W          249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-------RLLCET--------L--LEP  311 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-------HHHHHH--------H--TST
T ss_pred             HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-------HHHHHH--------h--ccC
Confidence            2333468999999999999986     67788889999999999986211000       000000        0  112


Q ss_pred             CCCcCEEeccCCCCCCCC---CCCCCCCCCCCCEEEcCCCCCccC-C----cccCC-CCCcceeeccCccccc----cCC
Q 012027          141 LGSLTKLDLSDCGLGEGA---IPSDIGNLHSLKTLYLSKNNFVTL-P----ASINC-LFNLEKLKLEDCKRLQ----SLP  207 (472)
Q Consensus       141 l~~L~~L~L~~~~l~~~~---lp~~l~~l~~L~~L~Ls~n~~~~l-p----~~i~~-l~~L~~L~l~~c~~L~----~lp  207 (472)
                      .++|+.|++++|.+....   ++..+..+++|++|+|++|.+... +    ..+.. .++|+.|++++|..-.    .+|
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            346888888888775321   345566677888888888877632 2    22222 5678888888875321    333


Q ss_pred             CC---CCCccEEEEccC
Q 012027          208 QL---PPNVEKVRVNGC  221 (472)
Q Consensus       208 ~l---p~~L~~L~~~~c  221 (472)
                      ..   .++|+.|++++|
T Consensus       392 ~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHCCCCCEEECCSS
T ss_pred             HHHHhCCCccEEECCCC
Confidence            21   257777877776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.35  E-value=2.7e-13  Score=134.90  Aligned_cols=196  Identities=17%  Similarity=0.169  Sum_probs=138.3

Q ss_pred             EEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccC-----cccCCCC-CCCEEEccCCCCchhhhhhhCCC-----C
Q 012027            6 ELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLP-----SNINSLK-SLKTLNLLGCFKFENLLETVGQV-----E   73 (472)
Q Consensus         6 ~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp-----~~i~~L~-~L~~L~Ls~c~~l~~lp~~l~~l-----~   73 (472)
                      .+.|+.++++.. |..+...++|++|+|++|. +...+     ..+..++ +|++|+|++|......+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            467888998854 5545566679999999988 55554     5677788 89999999986555445555554     9


Q ss_pred             CCCEEeeeCccCCCCCcc-----ccCC-CCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCC-CCCcC
Q 012027           74 SLEELDISGTAIRCPPSS-----IFLM-KNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSG-LGSLT  145 (472)
Q Consensus        74 ~L~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~-l~~L~  145 (472)
                      +|++|++++|.+...+..     +..+ ++|+.|++++|...... ..                  .+.. +.. .++|+
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~------------------~l~~~l~~~~~~L~  141 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SS------------------EFKQAFSNLPASIT  141 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HH------------------HHHHHHTTSCTTCC
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HH------------------HHHHHHHhCCCcee
Confidence            999999999999865432     4455 89999999998732210 00                  0000 233 35899


Q ss_pred             EEeccCCCCCCC---CCCCCCCCCC-CCCEEEcCCCCCccCCc-----ccCCC-CCcceeeccCccccc----cCC----
Q 012027          146 KLDLSDCGLGEG---AIPSDIGNLH-SLKTLYLSKNNFVTLPA-----SINCL-FNLEKLKLEDCKRLQ----SLP----  207 (472)
Q Consensus       146 ~L~L~~~~l~~~---~lp~~l~~l~-~L~~L~Ls~n~~~~lp~-----~i~~l-~~L~~L~l~~c~~L~----~lp----  207 (472)
                      +|++++|.+.+.   .++..+..++ +|++|+|++|.++....     .+..+ ++|+.|+|++|..-.    .++    
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            999999988631   1233345554 99999999999985442     45566 599999999997332    122    


Q ss_pred             CCCCCccEEEEccC
Q 012027          208 QLPPNVEKVRVNGC  221 (472)
Q Consensus       208 ~lp~~L~~L~~~~c  221 (472)
                      ..+++|+.|++++|
T Consensus       222 ~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          222 SIPNHVVSLNLCLN  235 (362)
T ss_dssp             HSCTTCCEEECCSS
T ss_pred             cCCCCceEEECcCC
Confidence            24679999999887

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.34  E-value=6.3e-12  Score=113.34  Aligned_cols=126  Identities=19%  Similarity=0.205  Sum_probs=102.6

Q ss_pred             CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc--ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027           51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS--IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS  128 (472)
Q Consensus        51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~  128 (472)
                      -++++++++ .+..+|..+..  +|++|++++|.+..++..  +..+++|++|++++|....                  
T Consensus        10 ~~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------   68 (192)
T 1w8a_A           10 GTTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG------------------   68 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC------------------
T ss_pred             CCEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC------------------
Confidence            378999985 46788887644  899999999999988764  8899999999999987332                  


Q ss_pred             CCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccc
Q 012027          129 DLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKR  202 (472)
Q Consensus       129 ~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~  202 (472)
                          .....+.++++|+.|+|++|++. +..+..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+.
T Consensus        69 ----~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           69 ----IEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ----BCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ----cCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence                12233788999999999999996 44556689999999999999999855 77889999999999998863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.6e-12  Score=115.51  Aligned_cols=61  Identities=23%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             CCCCCcCEEeccCCCCCCCCCCC--CCCCCCCCCEEEcCCCCCccCCcc----cCCCCCcceeeccCcc
Q 012027          139 SGLGSLTKLDLSDCGLGEGAIPS--DIGNLHSLKTLYLSKNNFVTLPAS----INCLFNLEKLKLEDCK  201 (472)
Q Consensus       139 ~~l~~L~~L~L~~~~l~~~~lp~--~l~~l~~L~~L~Ls~n~~~~lp~~----i~~l~~L~~L~l~~c~  201 (472)
                      ..+++|+.|++++|.+.  .+|.  .++.+++|+.|++++|.+..+|..    +..+++|+.|++++|.
T Consensus        85 ~~l~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHCTTCCEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hcCCCCCEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            34455666666666663  2555  677888888888888888888875    7888888888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=6.4e-13  Score=140.57  Aligned_cols=218  Identities=17%  Similarity=0.083  Sum_probs=127.0

Q ss_pred             CCCccEEEeeCCCCee-ccccccC-Cc-CCcEEEeecCcCCC--ccCcccCCCCCCCEEEccCCCCchh----hhhhhCC
Q 012027            1 MECLRELLLDKTDIKE-MPLSIEL-LS-GLVQLTLKGCKNLV--RLPSNINSLKSLKTLNLLGCFKFEN----LLETVGQ   71 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~si~~-L~-~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~~l~~   71 (472)
                      +++|++|+|+++.+.. .+..++. ++ +|++|+|++|..+.  .++..+.++++|++|+|++|.....    ++..+..
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            4688889998887762 3334544 33 48888888876322  2333334677888888888753222    4445556


Q ss_pred             CCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCC-CCCCCCcchhhhcccCC--CC-cCCCCCCCCCC
Q 012027           72 VESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSS-ASCYLPFPINLMRRSSD--LG-ALMLPSLSGLG  142 (472)
Q Consensus        72 l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~l~~~~~~--~~-~~~l~~l~~l~  142 (472)
                      +++|++|+++++.+..     ++..+.++++|+.|++++|...... .....+....+......  .. ......+..++
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            7777788887777652     3444556777777777776421100 00000011111110000  00 11122366777


Q ss_pred             CcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--cCCcccCCCCCcceeeccCccccccCCC---CCCCccEEE
Q 012027          143 SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV--TLPASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVR  217 (472)
Q Consensus       143 ~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~--~lp~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~  217 (472)
                      +|+.|+++++..  ..+|..+..+++|++|+|++|.+.  .++..+..+++|+.|++.++..-..++.   -.++|+.|+
T Consensus       271 ~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          271 KLCRLGLSYMGP--NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             TCCEEEETTCCT--TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccCccccch--hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence            888888877543  457777788888888888888865  3334467888888888875432222222   135688888


Q ss_pred             Ecc
Q 012027          218 VNG  220 (472)
Q Consensus       218 ~~~  220 (472)
                      +.+
T Consensus       349 L~~  351 (592)
T 3ogk_B          349 IER  351 (592)
T ss_dssp             EEC
T ss_pred             eec
Confidence            874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=2.6e-12  Score=114.09  Aligned_cols=102  Identities=18%  Similarity=0.106  Sum_probs=77.7

Q ss_pred             CCccEEEeeCCCCeeccccccCCc-CCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEEe
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLS-GLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEELD   79 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~-~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~   79 (472)
                      .+|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|. +..+|.. ++.+++|++|+
T Consensus        19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence            578888888888887765 54444 88888888876 5566 457788888888888875 4455544 47788888888


Q ss_pred             eeCccCCCCCc--cccCCCCCcEEEecCCC
Q 012027           80 ISGTAIRCPPS--SIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        80 L~~~~i~~lp~--~i~~l~~L~~L~L~~~~  107 (472)
                      +++|.+..+|.  .+..+++|+.|++++|.
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence            88888888776  77788888888888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=1.2e-11  Score=111.69  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=74.5

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.|+.+|..+..+++|++|+|++|. +..++ ..+.++++|++|+|++|......|..+..+++|++|+|
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            35777777777777777777777777777777766 44444 45777777777777776654444556777777777777


Q ss_pred             eCccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027           81 SGTAIRCPPSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (472)
                      ++|.+..+|.. +..+++|+.|++++|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            77777777653 6667777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=3.7e-11  Score=106.58  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=45.2

Q ss_pred             cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecCC
Q 012027           28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRGC  106 (472)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~  106 (472)
                      +.++++++. +..+|..+  .++|++|++++|......+..++.+++|++|++++|.+..+|.. +..+++|+.|++++|
T Consensus        10 ~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            455555543 55566443  35677777776553332334456777777777777777766543 355566666666555


Q ss_pred             C
Q 012027          107 N  107 (472)
Q Consensus       107 ~  107 (472)
                      .
T Consensus        87 ~   87 (177)
T 2o6r_A           87 K   87 (177)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=6.3e-11  Score=105.07  Aligned_cols=125  Identities=20%  Similarity=0.222  Sum_probs=88.2

Q ss_pred             CCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027           50 SLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS  128 (472)
Q Consensus        50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~  128 (472)
                      +.+.++++++ .+..+|..+  .++|++|++++|.+..+|.. +..+++|++|++++|....                  
T Consensus         8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------   66 (177)
T 2o6r_A            8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS------------------   66 (177)
T ss_dssp             ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC------------------
T ss_pred             CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE------------------
Confidence            3567777774 455666554  36788888888888877654 4778888888888775321                  


Q ss_pred             CCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCccc-CCCCCcceeeccCcc
Q 012027          129 DLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASI-NCLFNLEKLKLEDCK  201 (472)
Q Consensus       129 ~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i-~~l~~L~~L~l~~c~  201 (472)
                           ..+. +..+++|+.|++++|.+. +..+..+..+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+
T Consensus        67 -----~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           67 -----LPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             -----CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -----eChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence                 1122 567788888888888876 333344678888888888888888777654 678888888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.25  E-value=1e-12  Score=138.96  Aligned_cols=217  Identities=17%  Similarity=0.086  Sum_probs=140.4

Q ss_pred             CCCccEEEeeCCCC----eeccccc------------cCCcCCcEEEeecCcCCCccCcccCCC--CCCCEEEccCCCCc
Q 012027            1 MECLRELLLDKTDI----KEMPLSI------------ELLSGLVQLTLKGCKNLVRLPSNINSL--KSLKTLNLLGCFKF   62 (472)
Q Consensus         1 l~~L~~L~L~~~~l----~~lp~si------------~~L~~L~~L~L~~c~~l~~lp~~i~~L--~~L~~L~Ls~c~~l   62 (472)
                      +++|++|+|+++..    ..+|..+            ..+++|++|+|++|......+..+..+  .+|++|++++|...
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            57899999988532    1233222            378999999999986333344445443  45999999999743


Q ss_pred             h--hhhhhhCCCCCCCEEeeeCccCCCC-----CccccCCCCCcEEEecCCCCCCCCCC------CCCCcchhhhcccCC
Q 012027           63 E--NLLETVGQVESLEELDISGTAIRCP-----PSSIFLMKNLKTLSFRGCNGPPSSAS------CYLPFPINLMRRSSD  129 (472)
Q Consensus        63 ~--~lp~~l~~l~~L~~L~L~~~~i~~l-----p~~i~~l~~L~~L~L~~~~~~~~~~~------~~~~~~~~l~~~~~~  129 (472)
                      .  .++..+..+++|++|+|++|.+...     +..+..+++|+.|+++++........      ...+....+....+.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            2  3555566899999999999987633     33456789999999998864311000      011111112222221


Q ss_pred             CCcCCCCC-CCCCCCcCEEeccCCCCC--CCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcccccc-
Q 012027          130 LGALMLPS-LSGLGSLTKLDLSDCGLG--EGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQS-  205 (472)
Q Consensus       130 ~~~~~l~~-l~~l~~L~~L~L~~~~l~--~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~-  205 (472)
                      ...  ++. +..+++|++|+++.+...  ....+..+..+++|+.|+++++....+|..+..+++|+.|++++|. +.. 
T Consensus       232 ~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~  308 (592)
T 3ogk_B          232 ILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETE  308 (592)
T ss_dssp             GGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred             HHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence            111  222 455667777777653221  1234566788889999999888777888888899999999999998 321 


Q ss_pred             -C---CCCCCCccEEEEcc
Q 012027          206 -L---PQLPPNVEKVRVNG  220 (472)
Q Consensus       206 -l---p~lp~~L~~L~~~~  220 (472)
                       +   -.-.++|+.|++.+
T Consensus       309 ~~~~~~~~~~~L~~L~L~~  327 (592)
T 3ogk_B          309 DHCTLIQKCPNLEVLETRN  327 (592)
T ss_dssp             HHHHHHTTCTTCCEEEEEG
T ss_pred             HHHHHHHhCcCCCEEeccC
Confidence             1   12346889998853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.23  E-value=3e-13  Score=143.13  Aligned_cols=107  Identities=20%  Similarity=0.189  Sum_probs=63.4

Q ss_pred             CCCccEEEeeCCC-Ceec---c------------ccccCCcCCcEEEeecCcCCCccCcccC-CCCCCCEEEccCCCCch
Q 012027            1 MECLRELLLDKTD-IKEM---P------------LSIELLSGLVQLTLKGCKNLVRLPSNIN-SLKSLKTLNLLGCFKFE   63 (472)
Q Consensus         1 l~~L~~L~L~~~~-l~~l---p------------~si~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~Ls~c~~l~   63 (472)
                      +++|++|+|+++. +..+   |            .....+++|+.|+|++|......+..+. .+++|++|++++|..+.
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            4667777777753 2211   1            1124567777777777753333333343 46777777777775544


Q ss_pred             h--hhhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027           64 N--LLETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        64 ~--lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .  ++..+.++++|++|++++|.+..     ++.....+++|+.|++++|.
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            3  55555567777777777776543     22333356677777777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.20  E-value=2.6e-14  Score=129.66  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=33.0

Q ss_pred             ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEEEecCCC
Q 012027           44 NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        44 ~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.
T Consensus        43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence            45555555555555543 33344 4555555555555555555555555555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=1.1e-13  Score=125.55  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=85.0

Q ss_pred             CccEEEeeCC--CCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            3 CLRELLLDKT--DIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~--~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      .|+.+.+.+.  .++++|..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence            3556666654  677788789999999999999986 67788 78999999999999975 5578888888899999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      ++|.+..+| .+..+++|+.|++++|.
T Consensus       101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A          101 SYNQIASLS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             EEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred             cCCcCCcCC-ccccCCCCCEEECCCCc
Confidence            999999887 57788888888888775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=1.7e-10  Score=101.77  Aligned_cols=100  Identities=16%  Similarity=0.192  Sum_probs=86.6

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCcc-CcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeee
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRL-PSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDIS   81 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~   81 (472)
                      .++|+++++.++++|..+  .++|++|+|++|. +..+ |..+.++++|++|+|++|... .+| ..+..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence            478999999999999876  4899999999987 5555 677899999999999998654 555 456899999999999


Q ss_pred             CccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027           82 GTAIRCPPSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (472)
                      +|.++.+|.. +..+++|+.|+|++|.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            9999998874 8899999999999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.14  E-value=1.8e-10  Score=101.98  Aligned_cols=100  Identities=14%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhh-hCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLET-VGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~~   83 (472)
                      +.++++++.+.++|..+.  ++|++|+|++|......|..+.++++|++|+|++|. +..+|.. +..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence            678999999999998775  899999999988444446778999999999999975 5556654 689999999999999


Q ss_pred             cCCCCCcc-ccCCCCCcEEEecCCC
Q 012027           84 AIRCPPSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        84 ~i~~lp~~-i~~l~~L~~L~L~~~~  107 (472)
                      .+..+|.. +..+++|+.|++++|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCC
Confidence            99999876 8899999999999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.12  E-value=3.5e-12  Score=134.89  Aligned_cols=106  Identities=22%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             CCCccEEEeeCCCCee-cccccc-CCcCCcEEEeecCcCCCc--cCcccCCCCCCCEEEccCCCCch----hhhhhhCCC
Q 012027            1 MECLRELLLDKTDIKE-MPLSIE-LLSGLVQLTLKGCKNLVR--LPSNINSLKSLKTLNLLGCFKFE----NLLETVGQV   72 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~si~-~L~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~Ls~c~~l~----~lp~~l~~l   72 (472)
                      +++|++|+|+++.+.. .+..+. .+++|+.|+|++|..+..  ++..+.++++|++|++++|....    .++.....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            4678899999888763 333454 688899999988865554  55544568888888888876222    244444567


Q ss_pred             CCCCEEeeeCcc--CC--CCCccccCCCCCcEEEecCC
Q 012027           73 ESLEELDISGTA--IR--CPPSSIFLMKNLKTLSFRGC  106 (472)
Q Consensus        73 ~~L~~L~L~~~~--i~--~lp~~i~~l~~L~~L~L~~~  106 (472)
                      ++|++|+++++.  +.  .++..+.++++|+.|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            788888888876  21  12222345688888888877

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=3.1e-10  Score=111.13  Aligned_cols=172  Identities=17%  Similarity=0.123  Sum_probs=103.3

Q ss_pred             CCCccEEEeeCCCCe--------------------ecccc-ccC--------CcCCcEEEeecCcCCCccCc-ccCCCCC
Q 012027            1 MECLRELLLDKTDIK--------------------EMPLS-IEL--------LSGLVQLTLKGCKNLVRLPS-NINSLKS   50 (472)
Q Consensus         1 l~~L~~L~L~~~~l~--------------------~lp~s-i~~--------L~~L~~L~L~~c~~l~~lp~-~i~~L~~   50 (472)
                      +++|+.|+|++|.|.                    .+|.. |.+        +++|+.|+|.+  .++.++. ++.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence            478999999999887                    34432 556        88888888877  4666664 4777888


Q ss_pred             CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccC----CCCC-----------------------ccc-----------
Q 012027           51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAI----RCPP-----------------------SSI-----------   92 (472)
Q Consensus        51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i----~~lp-----------------------~~i-----------   92 (472)
                      |+.|++.++....--+..+..+.++..+.+..+..    ..+.                       ..+           
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            88888887654333334444444444443332100    0000                       000           


Q ss_pred             -----------------cCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCC
Q 012027           93 -----------------FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLG  155 (472)
Q Consensus        93 -----------------~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~  155 (472)
                                       ..+++|+.|++.+|....                      .....|.++.+|+.|+|..+ +.
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~----------------------I~~~aF~~~~~L~~l~l~~n-i~  262 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT----------------------IPDFTFAQKKYLLKIKLPHN-LK  262 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE----------------------ECTTTTTTCTTCCEEECCTT-CC
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce----------------------ecHhhhhCCCCCCEEECCcc-cc
Confidence                             025667777766654111                      01112677777888888775 43


Q ss_pred             CCCCC-CCCCCCCCCC-EEEcCCCCCccCC-cccCCCCCcceeeccCc
Q 012027          156 EGAIP-SDIGNLHSLK-TLYLSKNNFVTLP-ASINCLFNLEKLKLEDC  200 (472)
Q Consensus       156 ~~~lp-~~l~~l~~L~-~L~Ls~n~~~~lp-~~i~~l~~L~~L~l~~c  200 (472)
                        .++ ..|..+++|+ .|++.. +++.++ ..+..|++|+.|++.++
T Consensus       263 --~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          263 --TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             --EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             --eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence              243 3577778887 888877 666665 46677788888877654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=1.9e-09  Score=94.95  Aligned_cols=54  Identities=13%  Similarity=0.128  Sum_probs=26.9

Q ss_pred             CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEecCCC
Q 012027           51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~  107 (472)
                      .++++++++ .+..+|..+  .++|++|+|++|.|+.+ |..+.++++|++|+|++|.
T Consensus        11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~   65 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ   65 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence            445555553 344455444  24555555555555544 3334445555555554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.04  E-value=1.9e-09  Score=95.36  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=26.6

Q ss_pred             CEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcEEEecCCC
Q 012027           52 KTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        52 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~  107 (472)
                      +.++++++ .+..+|..+.  ++|++|+|++|.+..+ |..+.++++|+.|+|++|.
T Consensus        15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   68 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK   68 (174)
T ss_dssp             SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC
Confidence            45555553 3345555442  5555555555555544 3344455555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.93  E-value=2.4e-09  Score=105.36  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             EEEeeCC-CCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            6 ELLLDKT-DIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         6 ~L~L~~~-~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      .++++++ +|+.+|. |..+++|+.|+|+++..+..+| ..+.+|++|++|+|++|......|..++++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4678887 8999999 9999999999999734477777 57899999999999998765556678899999999999999


Q ss_pred             cCCCCCccccCCCCCcEEEecCCC
Q 012027           84 AIRCPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .+..+|..+.....|+.|+|.+|.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccceeCHHHcccCCceEEEeeCCC
Confidence            999999877665559999999886

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=2.3e-08  Score=98.26  Aligned_cols=103  Identities=20%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             CEEEccCCCCchhhhhhhCCCCCCCEEeeeC-ccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCC
Q 012027           52 KTLNLLGCFKFENLLETVGQVESLEELDISG-TAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSD  129 (472)
Q Consensus        52 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (472)
                      ..++++++..+..+|. +..+++|++|+|++ |.+..+| ..+.+|++|+.|+|++|....                   
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-------------------   70 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-------------------   70 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-------------------
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-------------------
Confidence            3567777546778888 88888899999986 8888776 457788888888888875221                   


Q ss_pred             CCcCCCC-CCCCCCCcCEEeccCCCCCCCCCCCC-CCCCCCCCEEEcCCCCCcc
Q 012027          130 LGALMLP-SLSGLGSLTKLDLSDCGLGEGAIPSD-IGNLHSLKTLYLSKNNFVT  181 (472)
Q Consensus       130 ~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~Ls~n~~~~  181 (472)
                          ..| .+.++++|+.|+|++|++..  +|.. +..++ |+.|+|.+|.+..
T Consensus        71 ----~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           71 ----VAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ----ECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ----eCHHHhcCCcCCCEEeCCCCccce--eCHHHcccCC-ceEEEeeCCCccC
Confidence                122 25677778888888877753  5544 34444 7888888777763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=1.8e-08  Score=98.37  Aligned_cols=63  Identities=21%  Similarity=0.275  Sum_probs=52.3

Q ss_pred             CCCcCEEeccCCCCCCCCCCC-CCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcc-eeeccCccccccCCC
Q 012027          141 LGSLTKLDLSDCGLGEGAIPS-DIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLE-KLKLEDCKRLQSLPQ  208 (472)
Q Consensus       141 l~~L~~L~L~~~~l~~~~lp~-~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~-~L~l~~c~~L~~lp~  208 (472)
                      +++|+.|+|++|++..  +|. .|..+++|+.|+|..| ++.++. .+..+.+|+ .|++.+  .++.|+.
T Consensus       225 ~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF  290 (329)
T ss_dssp             CTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred             cCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence            7899999999998863  665 5899999999999997 887775 578999999 999987  5666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.70  E-value=3.5e-10  Score=112.70  Aligned_cols=106  Identities=12%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             CCccEEEeeCCCCeecc-----cccc-CCcCCcEEEeecCcCCCccCccc-CCCCCCCEEEccCCCCchhh----hhhh-
Q 012027            2 ECLRELLLDKTDIKEMP-----LSIE-LLSGLVQLTLKGCKNLVRLPSNI-NSLKSLKTLNLLGCFKFENL----LETV-   69 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-----~si~-~L~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L~Ls~c~~l~~l----p~~l-   69 (472)
                      ++|+.|+|++|.|....     ..+. ..++|+.|+|++|..-..-...+ ..+++|++|+|++|.....-    ...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45667777776665321     1122 22566777776665211111111 23456666777666543322    2222 


Q ss_pred             CCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027           70 GQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        70 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  107 (472)
                      ....+|++|+|++|.+..     ++..+..+++|++|+|++|.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            234566666666666542     33334555666666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.54  E-value=7.6e-08  Score=95.19  Aligned_cols=167  Identities=15%  Similarity=0.098  Sum_probs=107.4

Q ss_pred             eccccccCCcCCcEEEeecCcC---------CCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCC
Q 012027           16 EMPLSIELLSGLVQLTLKGCKN---------LVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus        16 ~lp~si~~L~~L~~L~L~~c~~---------l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      .+..++..+++|+.|.+.+...         ...++..+..+++|+.|+|++|..+ .++. + .+++|++|++..+.+.
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLP  206 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCC
T ss_pred             HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCC
Confidence            3456677888999998865321         1124444566789999999987433 3444 3 3789999999888765


Q ss_pred             C-CCccc--cCCCCCcEEEecCCCCC--CCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           87 C-PPSSI--FLMKNLKTLSFRGCNGP--PSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        87 ~-lp~~i--~~l~~L~~L~L~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      . ....+  ..+++|+.|+|+.+...  .......+             .  .......+++|+.|+|.+|.+.+ ..+.
T Consensus       207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l-------------~--~~l~~~~~p~Lr~L~L~~~~i~~-~~~~  270 (362)
T 2ra8_A          207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF-------------R--PLFSKDRFPNLKWLGIVDAEEQN-VVVE  270 (362)
T ss_dssp             HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT-------------G--GGSCTTTCTTCCEEEEESCTTHH-HHHH
T ss_pred             hHHHHHHHHccCCCCcEEEEeccccccccchhHHHH-------------H--HHHhcCCCCCcCEEeCCCCCCch-HHHH
Confidence            2 11223  26889999998643210  00000000             0  01112357899999999998752 1111


Q ss_pred             C---CCCCCCCCEEEcCCCCCcc-----CCcccCCCCCcceeeccCcc
Q 012027          162 D---IGNLHSLKTLYLSKNNFVT-----LPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       162 ~---l~~l~~L~~L~Ls~n~~~~-----lp~~i~~l~~L~~L~l~~c~  201 (472)
                      .   .+.+++|+.|+|+.|.+..     ++..+..+++|+.|+|++|.
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            1   1357899999999998873     56666788999999999885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=1.6e-08  Score=99.98  Aligned_cols=174  Identities=19%  Similarity=0.115  Sum_probs=105.1

Q ss_pred             CcCCcEEEeecCcCC--------CccCcccCCCCCCCEEEccCCCC---------chhhhhhhCCCCCCCEEeeeCccCC
Q 012027           24 LSGLVQLTLKGCKNL--------VRLPSNINSLKSLKTLNLLGCFK---------FENLLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus        24 L~~L~~L~L~~c~~l--------~~lp~~i~~L~~L~~L~Ls~c~~---------l~~lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      +..++.|.+..+..-        ..+..++.++++|+.|.+.+...         ...+...+..+++|+.|+++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            345667777654411        12334456788999998865321         1135566778899999999987423


Q ss_pred             CCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC--CCCCCCcCEEeccCC--CCC-CC---C
Q 012027           87 CPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS--LSGLGSLTKLDLSDC--GLG-EG---A  158 (472)
Q Consensus        87 ~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~l~~L~~L~L~~~--~l~-~~---~  158 (472)
                      .++. + .+++|+.|++..|.....                      .+..  ...+++|+.|+|+.+  +.. +.   .
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~----------------------~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDS----------------------VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHH----------------------HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             eecc-c-cCCCCcEEEEecCCCChH----------------------HHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            4554 4 388999999987652110                      0001  125778999988632  111 10   0


Q ss_pred             CCCCC--CCCCCCCEEEcCCCCCcc-CCccc---CCCCCcceeeccCccccc----cCCCC---CCCccEEEEccC
Q 012027          159 IPSDI--GNLHSLKTLYLSKNNFVT-LPASI---NCLFNLEKLKLEDCKRLQ----SLPQL---PPNVEKVRVNGC  221 (472)
Q Consensus       159 lp~~l--~~l~~L~~L~Ls~n~~~~-lp~~i---~~l~~L~~L~l~~c~~L~----~lp~l---p~~L~~L~~~~c  221 (472)
                      +...+  ..+++|+.|+|.+|.+.. .+..+   ..+++|+.|+|+.|..-.    .++.-   .++|+.|++++|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            11122  357899999999988762 22122   357899999998875221    12221   257888888776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.53  E-value=2.9e-06  Score=85.07  Aligned_cols=168  Identities=10%  Similarity=0.149  Sum_probs=108.1

Q ss_pred             CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L   80 (472)
                      +|+.+.+.. +++.++. .|.++.+|+.++|.+++ +..+|.......+|+.+.+..+  +..++ ..+.++++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence            467777775 6777754 47889999999998754 7778776555788999988753  44444 45778888999888


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCC---
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEG---  157 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~---  157 (472)
                      ..+ +..++.....-.+|+.+.+.+.-..                       .....|.++++|+.+++.++.+...   
T Consensus       234 ~~~-l~~I~~~aF~~~~L~~i~lp~~i~~-----------------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRESGITTVKLPNGVTN-----------------------IASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             CTT-CCEECTTTTTTCCCSEEEEETTCCE-----------------------ECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             CCC-ccCccccccccCCccEEEeCCCccE-----------------------EChhHhhCCCCCCEEEeCCccccCCccc
Confidence            764 5555544444477888887543210                       0112266677777777766544210   


Q ss_pred             CC-CCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccC
Q 012027          158 AI-PSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLED  199 (472)
Q Consensus       158 ~l-p~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~  199 (472)
                      .+ +..|..+++|+.+.|. ++++.++. .+..|++|+.+.|..
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT
T ss_pred             EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc
Confidence            12 2346677777777776 34665543 456667777777744

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.53  E-value=1.5e-06  Score=87.30  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=121.6

Q ss_pred             CccEEEeeCCCCeecccc-ccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPLS-IELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~s-i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +|+.+.|..+ ++.|+.. |.+ .+|+.+.+.+  .++.++ ..+.++.+|+.+++.++ .+..++...-...+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence            5777887654 7777654 555 4799999986  467776 46888999999999885 46667766555789999999


Q ss_pred             eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      ..+ +..++. .+.++++|+.+.+..+-  ...                     ....|.+ ++|+.+.+.. ++.  .+
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~l--~~I---------------------~~~aF~~-~~L~~i~lp~-~i~--~I  262 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPENV--STI---------------------GQEAFRE-SGITTVKLPN-GVT--NI  262 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTTC--CEE---------------------CTTTTTT-CCCSEEEEET-TCC--EE
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCCc--cCc---------------------ccccccc-CCccEEEeCC-Ccc--EE
Confidence            854 666643 46688999999987632  110                     1112444 6799999954 343  24


Q ss_pred             -CCCCCCCCCCCEEEcCCCCCc-----cCC-cccCCCCCcceeeccCccccccCCC
Q 012027          160 -PSDIGNLHSLKTLYLSKNNFV-----TLP-ASINCLFNLEKLKLEDCKRLQSLPQ  208 (472)
Q Consensus       160 -p~~l~~l~~L~~L~Ls~n~~~-----~lp-~~i~~l~~L~~L~l~~c~~L~~lp~  208 (472)
                       ...|..+++|+.+++.++.+.     .++ ..+..|++|+.+.+.+  .++.++.
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~  316 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ  316 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh
Confidence             456899999999999988765     444 4678899999998874  3555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=2.1e-07  Score=92.44  Aligned_cols=106  Identities=15%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             CCccEEEeeCCCCee--ccccccCCcCCcEEEeecCcCCCc----cCccc-CCCCCCCEEEccCCCCch----hhhhhhC
Q 012027            2 ECLRELLLDKTDIKE--MPLSIELLSGLVQLTLKGCKNLVR----LPSNI-NSLKSLKTLNLLGCFKFE----NLLETVG   70 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~si~~L~~L~~L~L~~c~~l~~----lp~~i-~~L~~L~~L~Ls~c~~l~----~lp~~l~   70 (472)
                      ++|++|+|++|.|..  +......+++|+.|+|++|.....    +...+ ...++|++|+|++|....    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            589999999999873  233234578999999999863222    22222 346789999999997533    3667778


Q ss_pred             CCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027           71 QVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        71 ~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .+++|++|+|++|.|..     ++..+...++|+.|+|++|.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            89999999999999873     23445555666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.97  E-value=3e-06  Score=75.36  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=75.3

Q ss_pred             CCccEEEeeCC-CCe-----eccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh----hhh
Q 012027            2 ECLRELLLDKT-DIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN----LLE   67 (472)
Q Consensus         2 ~~L~~L~L~~~-~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~   67 (472)
                      ++|++|+|++| .|.     .+...+...++|++|+|++|..-.    .+...+...++|++|+|++|..-..    +.+
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            56888888888 775     245556677888888888876221    2344455567888888888765443    567


Q ss_pred             hhCCCCCCCEEee--eCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027           68 TVGQVESLEELDI--SGTAIRC-----PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        68 ~l~~l~~L~~L~L--~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .+...++|++|+|  ++|.|..     +...+...++|+.|++++|.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            7777788888888  7788773     34455666888888888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.92  E-value=0.00015  Score=72.34  Aligned_cols=96  Identities=22%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccE
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEK  215 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~  215 (472)
                      +..+.+|+.+.+..+ +.  .++ .++..+++|+.++|.. .++.++. .+.+|.+|+.+.+..+  ++.|..-      
T Consensus       293 F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------  360 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN------  360 (394)
T ss_dssp             TTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT------
T ss_pred             ccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH------
Confidence            455666666666543 21  132 3466667777777643 3555532 4455666666655332  2222221      


Q ss_pred             EEEccCCCcccccccccccccccceeeecccccc
Q 012027          216 VRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKL  249 (472)
Q Consensus       216 L~~~~c~sL~~~~~~~~~~~~~~~~~~f~~c~~l  249 (472)
                       -..+|++|+.+..+..+...   -..|.+|.+|
T Consensus       361 -aF~~C~~L~~i~lp~~~~~~---~~~F~~c~~L  390 (394)
T 4fs7_A          361 -AFQGCINLKKVELPKRLEQY---RYDFEDTTKF  390 (394)
T ss_dssp             -TBTTCTTCCEEEEEGGGGGG---GGGBCTTCEE
T ss_pred             -HhhCCCCCCEEEECCCCEEh---hheecCCCCC
Confidence             14677777776655433221   1236677665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=2.1e-05  Score=68.86  Aligned_cols=85  Identities=18%  Similarity=0.267  Sum_probs=60.9

Q ss_pred             cCCcEEEeecCcCCCc-cCcccCCCCCCCEEEccCCCCchh-hhhhhCCC----CCCCEEeeeCcc-CCC-CCccccCCC
Q 012027           25 SGLVQLTLKGCKNLVR-LPSNINSLKSLKTLNLLGCFKFEN-LLETVGQV----ESLEELDISGTA-IRC-PPSSIFLMK   96 (472)
Q Consensus        25 ~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~Ls~c~~l~~-lp~~l~~l----~~L~~L~L~~~~-i~~-lp~~i~~l~   96 (472)
                      .+|+.||+++|. ++. --..+.++++|++|+|++|..+.. --..+..+    ++|++|+|++|. |+. --..+.+++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            468999999987 432 223467889999999999976643 23445554    479999999974 762 123466789


Q ss_pred             CCcEEEecCCCCCC
Q 012027           97 NLKTLSFRGCNGPP  110 (472)
Q Consensus        97 ~L~~L~L~~~~~~~  110 (472)
                      +|+.|++++|....
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            99999999998654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=2.4e-05  Score=68.47  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             CccEEEeeCCCCeec-cccccCCcCCcEEEeecCcCCCccC-cccCCC----CCCCEEEccCCCCchh-hhhhhCCCCCC
Q 012027            3 CLRELLLDKTDIKEM-PLSIELLSGLVQLTLKGCKNLVRLP-SNINSL----KSLKTLNLLGCFKFEN-LLETVGQVESL   75 (472)
Q Consensus         3 ~L~~L~L~~~~l~~l-p~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L----~~L~~L~Ls~c~~l~~-lp~~l~~l~~L   75 (472)
                      +|+.|+|+++.|+.. -..+..+++|+.|+|++|..++.-- ..+..+    ++|++|+|++|..+.. --..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            589999999988732 2337889999999999998776421 224444    4799999999986654 23456789999


Q ss_pred             CEEeeeCcc-CC
Q 012027           76 EELDISGTA-IR   86 (472)
Q Consensus        76 ~~L~L~~~~-i~   86 (472)
                      ++|+++++. ++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            999999984 44

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.72  E-value=2.6e-05  Score=73.36  Aligned_cols=94  Identities=20%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             EEeeCCCCeecccc----ccCCcCCcEEEeecCcCCC--ccCcccCCCCCCCEEEccCCCCchhhhhhhCCCC--CCCEE
Q 012027            7 LLLDKTDIKEMPLS----IELLSGLVQLTLKGCKNLV--RLPSNINSLKSLKTLNLLGCFKFENLLETVGQVE--SLEEL   78 (472)
Q Consensus         7 L~L~~~~l~~lp~s----i~~L~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L   78 (472)
                      +++..|....++..    ..++++|+.|+|++|+.-.  .+|..+..+++|++|+|++|..- .+ ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceE
Confidence            44455544333322    2567888889988876322  34455567888999999886543 33 2233333  88899


Q ss_pred             eeeCccCC-CCC-------ccccCCCCCcEEE
Q 012027           79 DISGTAIR-CPP-------SSIFLMKNLKTLS  102 (472)
Q Consensus        79 ~L~~~~i~-~lp-------~~i~~l~~L~~L~  102 (472)
                      +|++|.+. .+|       ..+..+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99988886 344       2356788888886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.64  E-value=1.7e-06  Score=77.06  Aligned_cols=42  Identities=19%  Similarity=0.107  Sum_probs=24.5

Q ss_pred             cCCCCCCCEEEccCC-CCch----hhhhhhCCCCCCCEEeeeCccCC
Q 012027           45 INSLKSLKTLNLLGC-FKFE----NLLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus        45 i~~L~~L~~L~Ls~c-~~l~----~lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      +...++|++|+|++| ..-.    .+.+.+...++|++|+|++|.|.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            445666777777766 3322    24455555666666666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.52  E-value=0.0023  Score=63.59  Aligned_cols=15  Identities=13%  Similarity=0.253  Sum_probs=8.3

Q ss_pred             CCCCCCCCEEEcCCC
Q 012027          163 IGNLHSLKTLYLSKN  177 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n  177 (472)
                      +..+..|+.+.+..+
T Consensus       249 f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          249 FYGCTDLESISIQNN  263 (394)
T ss_dssp             TTTCSSCCEEEECCT
T ss_pred             ccccccceeEEcCCC
Confidence            445556666665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.44  E-value=0.0036  Score=62.16  Aligned_cols=98  Identities=14%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccEE
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEKV  216 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L  216 (472)
                      +.++..|+.+.+......  .-...+..+++|+.+.+. +.++.++. .+..+.+|+.+.+...  ++.|.+-       
T Consensus       261 F~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------  328 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD-------  328 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT-------
T ss_pred             eeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh-------
Confidence            445566666666543221  112345666777777764 34555543 3455666666665431  2222221       


Q ss_pred             EEccCCCcccccccccccccccceeeecccccc
Q 012027          217 RVNGCASLVTLLGALKLRKSSCTIIDFVDSLKL  249 (472)
Q Consensus       217 ~~~~c~sL~~~~~~~~~~~~~~~~~~f~~c~~l  249 (472)
                      -..+|++|+.+..+..+...  ....|.+|.+|
T Consensus       329 aF~~C~~L~~i~ip~sv~~I--~~~aF~~C~~L  359 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSSVTKI--PESAFSNCTAL  359 (394)
T ss_dssp             TTTTCTTCCEEEECTTCCBC--CGGGGTTCTTC
T ss_pred             HhhCCCCCCEEEECcccCEE--hHhHhhCCCCC
Confidence            13467777766554332211  11226777666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.20  E-value=0.00018  Score=67.48  Aligned_cols=67  Identities=24%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             CCCCcCEEeccCCCCCCC-CCCCCCCCCCCCCEEEcCCCCCccCCcccCCCC--CcceeeccCccccccCC
Q 012027          140 GLGSLTKLDLSDCGLGEG-AIPSDIGNLHSLKTLYLSKNNFVTLPASINCLF--NLEKLKLEDCKRLQSLP  207 (472)
Q Consensus       140 ~l~~L~~L~L~~~~l~~~-~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~--~L~~L~l~~c~~L~~lp  207 (472)
                      ++++|+.|+|++|++..- .+|..+..+++|+.|+|++|.+..+. .+..+.  +|+.|+|++|+.-..+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            467899999999998630 34566678999999999999999773 344444  89999999988655444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.69  E-value=0.032  Score=55.14  Aligned_cols=80  Identities=15%  Similarity=0.310  Sum_probs=54.1

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccE
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEK  215 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~  215 (472)
                      +.++.+|+.+.+... +.  .++ ..|..+.+|+.++|..+ ++.+.. .+.+|.+|+.+.+...  ++.|.+-      
T Consensus       284 F~~c~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~------  351 (394)
T 4gt6_A          284 FMNCPALQDIEFSSR-IT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPES------  351 (394)
T ss_dssp             TTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGG------
T ss_pred             cccccccccccCCCc-cc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHh------
Confidence            667889999998643 32  244 45889999999999754 666654 5778889998887532  3444322      


Q ss_pred             EEEccCCCccccccc
Q 012027          216 VRVNGCASLVTLLGA  230 (472)
Q Consensus       216 L~~~~c~sL~~~~~~  230 (472)
                       -..+|++|+.+...
T Consensus       352 -aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          352 -AFSNCTALNNIEYS  365 (394)
T ss_dssp             -GGTTCTTCCEEEES
T ss_pred             -HhhCCCCCCEEEEC
Confidence             14578888776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.32  E-value=0.14  Score=50.01  Aligned_cols=81  Identities=16%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCCCCCccE
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQLPPNVEK  215 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~  215 (472)
                      +.++.+|+.+.+... +.  .++ ..+..+++|+.+.+.++.++.++. .+.++.+|+.+.|...  ++.|..-      
T Consensus       259 F~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------  327 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY------  327 (379)
T ss_dssp             TTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT------
T ss_pred             cceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH------
Confidence            566677777777543 21  133 346778888888888777777654 4667777777766321  2222211      


Q ss_pred             EEEccCCCccccccc
Q 012027          216 VRVNGCASLVTLLGA  230 (472)
Q Consensus       216 L~~~~c~sL~~~~~~  230 (472)
                       -..+|.+|+.+..+
T Consensus       328 -aF~~C~~L~~i~ip  341 (379)
T 4h09_A          328 -AFKNCKALSTISYP  341 (379)
T ss_dssp             -TTTTCTTCCCCCCC
T ss_pred             -HhhCCCCCCEEEEC
Confidence             13467777766544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.07  E-value=0.059  Score=52.78  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeec
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIP-SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKL  197 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l  197 (472)
                      +.++.+|+.+.+.++.+..  ++ ..|..+.+|+.+.|.. +++.+.. .+.++++|+.+.+
T Consensus       282 F~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccccccce--ehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence            7788999999998877642  44 4688999999999864 3666654 4556666666544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.97  E-value=0.047  Score=44.94  Aligned_cols=55  Identities=25%  Similarity=0.352  Sum_probs=40.9

Q ss_pred             CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cCCCCCcceeeccCcc
Q 012027          145 TKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS-INCLFNLEKLKLEDCK  201 (472)
Q Consensus       145 ~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~  201 (472)
                      ..++.++.+++...+|..+.  ++|+.|+|++|+++.||.. +..+++|+.|+|.+|+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            46777777775224776543  5689999999999988865 4678888999888875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.70  E-value=0.042  Score=48.71  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=18.7

Q ss_pred             CCCCCCCEEEccCCCCchh----hhhhhCCCCCCCEEeeeCccCC
Q 012027           46 NSLKSLKTLNLLGCFKFEN----LLETVGQVESLEELDISGTAIR   86 (472)
Q Consensus        46 ~~L~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~   86 (472)
                      ..-+.|+.|+|++|..-..    +.+.+..-+.|++|+|++|.|.
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3334555555555443321    3333333445555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.43  E-value=0.048  Score=48.32  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=37.7

Q ss_pred             CccEEEeeCC-CCe-----eccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCch----hhhhh
Q 012027            3 CLRELLLDKT-DIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFE----NLLET   68 (472)
Q Consensus         3 ~L~~L~L~~~-~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~----~lp~~   68 (472)
                      .|+.|+|+++ .|.     .+-..+..=+.|+.|+|++|..-.    .+...+..-+.|++|+|++|..-.    .+.+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4556666553 443     123334444556666666654211    122223333556666666654432    23444


Q ss_pred             hCCCCCCCEEeeeC
Q 012027           69 VGQVESLEELDISG   82 (472)
Q Consensus        69 l~~l~~L~~L~L~~   82 (472)
                      +..-+.|++|+|++
T Consensus       122 L~~N~tL~~L~L~n  135 (197)
T 1pgv_A          122 TLVTQSIVEFKADN  135 (197)
T ss_dssp             TTTTCCCSEEECCC
T ss_pred             HhhCCceeEEECCC
Confidence            44445555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.27  E-value=0.11  Score=42.57  Aligned_cols=52  Identities=13%  Similarity=0.147  Sum_probs=33.1

Q ss_pred             EEEccCCCCch--hhhhhhCCCCCCCEEeeeCccCCCCCcc-ccCCCCCcEEEecCCC
Q 012027           53 TLNLLGCFKFE--NLLETVGQVESLEELDISGTAIRCPPSS-IFLMKNLKTLSFRGCN  107 (472)
Q Consensus        53 ~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~  107 (472)
                      +++.++ ..+.  .+|..+  -.+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus        12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            455555 3344  566543  34577777777777777654 4567778888877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	472
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 9/169 (5%)

Query: 31  TLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPS 90
            L    N ++    + SL +L  L+L    +  NL   +  +  L EL +    I     
Sbjct: 223 ELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQISNISP 280

Query: 91  SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLS 150
            +  +  L  L          S    L     L    +++    +  +S L  L +L  +
Sbjct: 281 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFA 337

Query: 151 DCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLED 199
           +  + +    S + NL ++  L    N    L   +  L  + +L L D
Sbjct: 338 NNKVSD---VSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 12/194 (6%)

Query: 31  TLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPS 90
           +L    N +   + +  L +L  L+L G    +  + T+  + +L +LD++   I     
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 91  SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLS 150
            +  +  L  L          S    L    NL    + L    +  +S L +LT L L 
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE--DISPISNLKNLTYLTLY 315

Query: 151 DCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP 210
              + +    S + +L  L+ L+ + NN V+  +S+  L N+  L      ++  L  L 
Sbjct: 316 FNNISD---ISPVSSLTKLQRLFFA-NNKVSDVSSLANLTNINWLSAGHN-QISDLTPLA 370

Query: 211 --PNVEKVRVNGCA 222
               + ++ +N  A
Sbjct: 371 NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEK 194
             S + L  +T L     G+        +  L++L  +  S N    +      L NL K
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP----LKNLTK 89

Query: 195 LK 196
           L 
Sbjct: 90  LV 91

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 6e-09
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 115 CYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYL 174
             L      +   +     +        SL +L++S+  L E  +P+    L   + L  
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRL---ERLIA 311

Query: 175 SKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVN 219
           S N+   +P       NL++L +E    L+  P +P +VE +R+N
Sbjct: 312 SFNHLAEVP---ELPQNLKQLHVEYNP-LREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 165 NLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC 221
              SL+ L +S N  + LPA       LE+L       L  +P+LP N++++ V   
Sbjct: 282 LPPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQLHVEYN 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 143 SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCL--FNLEKLKLEDC 200
              +L+L++ GL    +P    +L   ++L  S N+   LP     L    ++   L+  
Sbjct: 39  QAHELELNNLGLSS--LPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 201 KRLQSLPQLP 210
             L  L +  
Sbjct: 94  SDLPPLLEYL 103

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 148 DLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP 207
           DL +  +  G +P  +  L  L +L +S NN          L   +     + K L   P
Sbjct: 250 DLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 208 QLPP 211
            LP 
Sbjct: 309 -LPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 136 PSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF 179
             L+ L  L  L++S   L  G IP   GNL        + N  
Sbjct: 262 QGLTQLKFLHSLNVSFNNL-CGEIPQ-GGNLQRFDVSAYANNKC 303

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 30/232 (12%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 4   LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCK-NLVRLPSNINSLKSLKTLNLLGCFKF 62
           +      ++ + +          +  + L      +  L   ++    L+ L+L G    
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84

Query: 63  ENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN 122
           + ++ T+ +  +L  L++SG +     +   L+ +   L     +        ++   + 
Sbjct: 85  DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144

Query: 123 LMRRSSDLGAL-----------MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKT 171
            +  +     L           +   +    +L  LDLSD  + +     +   L+ L+ 
Sbjct: 145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204

Query: 172 LYLSKNNFVT--LPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGC 221
           L LS+   +       +  +  L+ L++       +L  L   +  +++N  
Sbjct: 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 256

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 1/124 (0%)

Query: 99  KTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGA 158
           +TL   G N  P      L   +   R         L        +  +DLS+  +    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 159 IPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVR 217
           +   +     L+ L L        +  ++    NL +L L  C                R
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 218 VNGC 221
           ++  
Sbjct: 123 LDEL 126

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 24/127 (18%)

Query: 66  LETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMR 125
           L  + Q+  +  LD+S   +R  P ++  ++ L+ L                        
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE---------------- 56

Query: 126 RSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPAS 185
                    +  ++ L  L +L L +  L + A    + +   L  L L  N+       
Sbjct: 57  --------NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 186 INCLFNL 192
              L  +
Sbjct: 109 QERLAEM 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 14/233 (6%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           +  L  L L K  +KE+P  +      +++       + +   N  +   +  L      
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCN--GPPSSASCYLP 118
                      ++ L  + I+ T I   P  +    +L  L   G       +++   L 
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 195

Query: 119 FPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNN 178
               L    + + A+   SL+    L +L L++  L +  +P  + +   ++ +YL  NN
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNN 253

Query: 179 FVTLPASINC-------LFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASL 224
              + ++  C         +   + L     +Q     P     V V     L
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 137 SLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINC 188
               L +L  L L +  +     P     L  L+ LYLSKN    LP  +  
Sbjct: 50  DFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 40/235 (17%), Positives = 67/235 (28%), Gaps = 11/235 (4%)

Query: 2   ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFK 61
               E+  DK ++  +P   +L      L L          + +     L  LNL     
Sbjct: 10  ASHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 62  FENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPI 121
            +  ++    V    +L  +                +  +SF      P  A   L    
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 122 NLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT 181
            L  + ++L  L  P L       +                +  L +L TL L +N+  T
Sbjct: 128 ELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 182 LPASINCLFNLEKLKLE------DCKRLQSLPQ-LPPNVEKVRVNGCASLVTLLG 229
           +P        L    L       +C  +    + L  N E V V      V  + 
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNC-EILYFRRWLQDNAENVYVWKQGVDVKAMT 240

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 29/335 (8%), Positives = 70/335 (20%), Gaps = 12/335 (3%)

Query: 143 SLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNF-----VTLPASINCLFNLEKLKL 197
            +  LD+    L +      +  L   + + L            + +++     L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 198 EDCKRLQSLPQLPPNVEKVRVNGCASLVTLLGALKLRKSSCTIIDFVDSLKLLGKNGLAI 257
                     +L        + G  +    +  L L+    T          L       
Sbjct: 63  RSN-------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115

Query: 258 SMLREFLEVVSAPSHKFSIVVPGSEIPKWFMYQNEGSSITVTRPSYLCNMNQVVGYAACR 317
            +      +  A        +   +     +     S    +       +     +    
Sbjct: 116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 175

Query: 318 VFHVPKHSTGIRRFYRYPHPAHVLHCSMDEKFGHRGSDHLWLLYLPRQSYYCNVKWHFES 377
           V +   +  G+R   +    +     ++  +     SD+   L     S     +    S
Sbjct: 176 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235

Query: 378 NHFRLSFMDEREKHCPAGSGTGLKVKRCGFHPGYMHEVEEFDETTKQWTRFTSYNLNEFH 437
           N      M E        S     +             +       + +           
Sbjct: 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 438 HDFVGSNMAVAKANGSGCCDDYDEEPQPNRFRQLE 472
            D     +           +    +          
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 330

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 138 LSGLGSLTKLDLSDCGLGE---GAIPSDIGNLHSLKTLYLSKNNF 179
           L  L     + L DCGL E     I S +    +L  L L  N  
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 25/192 (13%), Positives = 50/192 (26%), Gaps = 23/192 (11%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTL-----N 55
                +  L K  + +  ++   L+ + Q+        ++    I  L ++  L      
Sbjct: 23  FAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSD--IKSVQGIQYLPNVTKLFLNGNK 79

Query: 56  LLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIF------------LMKNLKTLSF 103
           L       NL           ++    +                      L+   +  S 
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 104 RGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI 163
              N   +  +              D     +  L+GL  L  L LS   + +      +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---LRAL 196

Query: 164 GNLHSLKTLYLS 175
             L +L  L L 
Sbjct: 197 AGLKNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 159 IPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL 209
                        L +S+    +LP+    L NL+KL+      L+ LP L
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPTL 241

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 5/175 (2%)

Query: 35  CKNLVRLPSNINSLKSLKTLNLLGCF---KFENLLETVGQVESLEELDISGTAIRCPPSS 91
            K+ +R+     S+ + +   +         E +  T+  +++ + L +S   I     S
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S 65

Query: 92  IFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSD 151
           +  M+NL+ LS                         S      L  +  L +L  L +S+
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIASLSGIEKLVNLRVLYMSN 124

Query: 152 CGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSL 206
             +        +  L  L+ L L+ N         N         ++    L+ L
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 12/195 (6%)

Query: 1   MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCF 60
           +    + +L KT++ +  +S   L  +  L              I S+  ++ LN L   
Sbjct: 17  LAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRL--------GIKSIDGVEYLNNLTQI 67

Query: 61  KFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFP 120
            F N   T           +         + I  + NL  L+         +    L   
Sbjct: 68  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127

Query: 121 INLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV 180
            NL R       +   S     +  +             P  + NL +L+ L +S N   
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 185

Query: 181 TLPASINCLFNLEKL 195
            +   +  L NLE L
Sbjct: 186 DISV-LAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	472
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=4.1e-20  Score=178.12  Aligned_cols=204  Identities=22%  Similarity=0.220  Sum_probs=156.6

Q ss_pred             CccEEEeeCCCCe---eccccccCCcCCcEEEeecCcC-CCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEE
Q 012027            3 CLRELLLDKTDIK---EMPLSIELLSGLVQLTLKGCKN-LVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEEL   78 (472)
Q Consensus         3 ~L~~L~L~~~~l~---~lp~si~~L~~L~~L~L~~c~~-l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L   78 (472)
                      +++.|+|+++++.   .+|+++++|++|++|+|++|.. .+.+|.+|++|++|++|+|++|...+..+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5789999998877   6899999999999999998544 45899999999999999999998877778888999999999


Q ss_pred             eeeCccCC-CCCccccCCCCCcEEEecCCCCCCCCCCC--CCCcc-hhhhcc-----------------------cCCCC
Q 012027           79 DISGTAIR-CPPSSIFLMKNLKTLSFRGCNGPPSSASC--YLPFP-INLMRR-----------------------SSDLG  131 (472)
Q Consensus        79 ~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~--~~~~~-~~l~~~-----------------------~~~~~  131 (472)
                      ++++|.+. .+|..+.+++.|+.+++++|......+..  .+... ..+...                       .....
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998766 67899999999999999998743222211  11111 001111                       11111


Q ss_pred             cCCCCC-CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccCCCCCcceeeccCccccccCCCC
Q 012027          132 ALMLPS-LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV-TLPASINCLFNLEKLKLEDCKRLQSLPQL  209 (472)
Q Consensus       132 ~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~-~lp~~i~~l~~L~~L~l~~c~~L~~lp~l  209 (472)
                      + ..|. +..+++|+.++++++.+. +. +..++.+++|+.|+|++|+++ .+|.+++++++|+.|+|++|+.-..+|+.
T Consensus       211 ~-~~~~~~~~~~~l~~l~~~~~~l~-~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         211 G-DASVLFGSDKNTQKIHLAKNSLA-FD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             E-CCGGGCCTTSCCSEEECCSSEEC-CB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             c-ccccccccccccccccccccccc-cc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            1 1222 567788999999998875 33 446888899999999999998 89999999999999999998766677754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-18  Score=162.34  Aligned_cols=190  Identities=25%  Similarity=0.275  Sum_probs=130.4

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ..+.+.+.++++|+++|+.+.  ++|++|+|++|. +..+| ..+.++++|++|+|++|. +..+|. ++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCc-CCCcCHHHhhcccccccccccccc-cccccc-cccccccccccc
Confidence            345667888889999997664  689999999976 66776 468899999999999974 566664 578999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      ++|.+...+..+..+++|+.|+++++.....                      ....+..+.+++.|++++|.+.. .-+
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~----------------------~~~~~~~l~~l~~L~l~~n~l~~-l~~  141 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSL----------------------PLGALRGLGELQELYLKGNELKT-LPP  141 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCC----------------------CSSTTTTCTTCCEEECTTSCCCC-CCT
T ss_pred             cccccccccccccccccccccccccccccee----------------------eccccccccccccccccccccce-ecc
Confidence            9999999999999999999999998874331                      11124455566666666666542 222


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCccccccCCCC---CCCccEEEEcc
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNG  220 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~  220 (472)
                      ..+..+++|+.|++++|+++.+|. .+..+++|+.|+|++|. ++.+|+-   .++|+.|++++
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecC
Confidence            334556666666666666665543 34556666666666654 4455531   13445555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=9.7e-18  Score=160.58  Aligned_cols=215  Identities=20%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|+|+++|+ +|.++++|++|++++|......|..+.++++|++|++++|. ++.+|..+  ...|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccch--hhhhhhhhc
Confidence            456666666666666664 36666666666666666444345556666666666666653 44444432  234555555


Q ss_pred             eCccCCCCC---------------------------ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcC
Q 012027           81 SGTAIRCPP---------------------------SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGAL  133 (472)
Q Consensus        81 ~~~~i~~lp---------------------------~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  133 (472)
                      ..+.+..++                           ..+..+++|+.+++.+|.... .+.........+....+.....
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcccCCccCEEECCCCcCCCC
Confidence            444443321                           123344556666665554221 1222222222233333333333


Q ss_pred             CCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCC-----
Q 012027          134 MLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQ-----  208 (472)
Q Consensus       134 ~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~-----  208 (472)
                      ....+.+++.++.|++++|.+. +..+..+..+++|++|+|++|+++++|.++..+++|+.|+|++|+ ++.++.     
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~  264 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP  264 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC
T ss_pred             ChhHhhcccccccccccccccc-ccccccccccccceeeecccccccccccccccccCCCEEECCCCc-cCccChhhccC
Confidence            3333566667777777777665 233455666777777777777777777777777777777777764 555432     


Q ss_pred             -----CCCCccEEEEccCC
Q 012027          209 -----LPPNVEKVRVNGCA  222 (472)
Q Consensus       209 -----lp~~L~~L~~~~c~  222 (472)
                           .+++|+.|++.+++
T Consensus       265 ~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSS
T ss_pred             cchhcccCCCCEEECCCCc
Confidence                 12456666665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=1.3e-18  Score=167.56  Aligned_cols=197  Identities=20%  Similarity=0.213  Sum_probs=137.5

Q ss_pred             cCCcEEEeecCcCCC--ccCcccCCCCCCCEEEccCCCC-chhhhhhhCCCCCCCEEeeeCccCCCC-CccccCCCCCcE
Q 012027           25 SGLVQLTLKGCKNLV--RLPSNINSLKSLKTLNLLGCFK-FENLLETVGQVESLEELDISGTAIRCP-PSSIFLMKNLKT  100 (472)
Q Consensus        25 ~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~Ls~c~~-l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~  100 (472)
                      .+++.|+|+++..-.  .+|+.+++|++|++|+|++|.. .+.+|..++++++|++|+|++|.+..+ |..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999986433  6899999999999999998544 458999999999999999999999854 566888999999


Q ss_pred             EEecCCCCCCCCC--CCCCCcchhhhcccCCCCcCCCCCCCCCCCc-CEEeccCCCCC----------------------
Q 012027          101 LSFRGCNGPPSSA--SCYLPFPINLMRRSSDLGALMLPSLSGLGSL-TKLDLSDCGLG----------------------  155 (472)
Q Consensus       101 L~L~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L-~~L~L~~~~l~----------------------  155 (472)
                      ++++.|......+  ...+.....+....+...+.....+..+..+ +.++++.|++.                      
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999987444333  2233333333444444433222224444433 55555554432                      


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC---CCCccEEEEccC
Q 012027          156 EGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGC  221 (472)
Q Consensus       156 ~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c  221 (472)
                      .+.+|..++.+++|+.|++++|.+...+..+..+++|+.|++++|+....+|+-   .++|+.|+++++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            134566667778888888888887766667778888888888888766666642   246777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.3e-17  Score=148.31  Aligned_cols=162  Identities=27%  Similarity=0.380  Sum_probs=73.7

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|++|+++++.++.++. +..+++|++|+|++|+ ++.++. +..+++|++|++++|. +..+| .+..+++|+.|++++
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~-i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTT
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCcc-ccCccc-cccCcccccccccccc-ccccc-ccccccccccccccc
Confidence            34444554444444432 4444555555554443 333332 3444455555554432 23333 244444455555544


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      +.+..++ .+..++.|+.+++++|....                        .+.+..+++|+.+++++|.+.+  ++ .
T Consensus       122 ~~~~~~~-~l~~l~~l~~l~~~~n~l~~------------------------~~~~~~l~~L~~l~l~~n~l~~--i~-~  173 (210)
T d1h6ta2         122 NGISDIN-GLVHLPQLESLYLGNNKITD------------------------ITVLSRLTKLDTLSLEDNQISD--IV-P  173 (210)
T ss_dssp             SCCCCCG-GGGGCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCCC--CG-G
T ss_pred             ccccccc-cccccccccccccccccccc------------------------cccccccccccccccccccccc--cc-c
Confidence            4444333 23444444444444433111                        1113334455555555555532  32 2


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccCCCCCcceeecc
Q 012027          163 IGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLE  198 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~  198 (472)
                      +..+++|+.|+|++|.++.+| .+..+++|+.|+|+
T Consensus       174 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence            455555555555555555554 35555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.8e-16  Score=142.05  Aligned_cols=164  Identities=20%  Similarity=0.301  Sum_probs=116.2

Q ss_pred             eeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCC
Q 012027            9 LDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCP   88 (472)
Q Consensus         9 L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l   88 (472)
                      +..++++..+. ...+.+|+.|++++|. +..++ ++..+++|++|++++|. +..++. ++++++|++|++++|.+..+
T Consensus        25 l~~~~~~~~~~-~~~l~~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          25 LGKTNVTDTVS-QTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             TTCSSTTSEEC-HHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             hCCCCCCCccC-HHHhcCCCEEECCCCC-CCCcc-ccccCCCcCcCcccccc-ccCccc-ccCCcccccccccccccccc
Confidence            33444444332 4567788888888865 66665 37778888888888874 444554 77888888888888888777


Q ss_pred             CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCC
Q 012027           89 PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHS  168 (472)
Q Consensus        89 p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~  168 (472)
                      +. +.+++.|+.|++++|....                        .+.+..+++|+.|++++|.+..  ++ .+..+++
T Consensus       100 ~~-l~~l~~L~~L~l~~~~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~--~~-~l~~~~~  151 (199)
T d2omxa2         100 TP-LANLTNLTGLTLFNNQITD------------------------IDPLKNLTNLNRLELSSNTISD--IS-ALSGLTS  151 (199)
T ss_dssp             GG-GTTCTTCSEEECCSSCCCC------------------------CGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTT
T ss_pred             cc-ccccccccccccccccccc------------------------ccccchhhhhHHhhhhhhhhcc--cc-ccccccc
Confidence            64 7788888888887765322                        2235667778888888887752  33 4777888


Q ss_pred             CCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCC
Q 012027          169 LKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLP  207 (472)
Q Consensus       169 L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp  207 (472)
                      |+.|++.+|.++.++ .++++++|+.|++++|+ ++.++
T Consensus       152 L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~  188 (199)
T d2omxa2         152 LQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSDIS  188 (199)
T ss_dssp             CSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCG
T ss_pred             ccccccccccccCCc-cccCCCCCCEEECCCCC-CCCCc
Confidence            888888888888776 47788888888888874 55554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.4e-16  Score=146.80  Aligned_cols=195  Identities=20%  Similarity=0.186  Sum_probs=116.8

Q ss_pred             CccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhh-hhhhCCCCCCCEEee
Q 012027            3 CLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENL-LETVGQVESLEELDI   80 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L   80 (472)
                      ++++|+|++|+|+++|+ +|.++++|++|+++++......+..+..+..++.+....+..+..+ +..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45566666666665554 3555666666666655422222233344555555555544444443 344555666666666


Q ss_pred             eCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGTAIRCPPS-SIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      ++|.+..++. .+..+.+|+.++++++.                      +.......+..+++|+.|++++|++. ...
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~----------------------l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~  169 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNA----------------------LQALPDDTFRDLGNLTHLFLHGNRIS-SVP  169 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred             CCcccccccccccchhcccchhhhcccc----------------------ccccChhHhccccchhhcccccCccc-ccc
Confidence            6666554432 34445566666666554                      22212223677888899999988885 334


Q ss_pred             CCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC---CCCCccEEEEcc
Q 012027          160 PSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ---LPPNVEKVRVNG  220 (472)
Q Consensus       160 p~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~---lp~~L~~L~~~~  220 (472)
                      +..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|..-...+.   -.++|+.|++++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            56678889999999999988855 67888888999999988774332221   124566666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.4e-16  Score=146.04  Aligned_cols=174  Identities=22%  Similarity=0.205  Sum_probs=149.0

Q ss_pred             CCccEEEeeCCCCeeccc-cccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPL-SIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      ++|++|+|++|.|+.+|. .|.++++|++|+|++|. ++.+|. ++.+++|++|+|++|. +...+..+..+++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            479999999999999975 58999999999999985 788886 6789999999999975 6667888999999999999


Q ss_pred             eCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCC
Q 012027           81 SGTAIRCPP-SSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAI  159 (472)
Q Consensus        81 ~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~l  159 (472)
                      +++.+..++ ..+..+.+|+.|++.+|.....                      ....+..+++|+.|++++|++. +..
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l----------------------~~~~~~~l~~l~~l~l~~N~l~-~~~  164 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTL----------------------PPGLLTPTPKLEKLSLANNNLT-ELP  164 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC----------------------CTTTTTTCTTCCEEECTTSCCS-CCC
T ss_pred             cccccceeecccccccccccccccccccccee----------------------ccccccccccchhccccccccc-ccC
Confidence            999998765 4456789999999998863221                      1122667889999999999997 344


Q ss_pred             CCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027          160 PSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       160 p~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~  201 (472)
                      +..++.+++|++|+|++|+++.+|.++..+++|+.|+|++|+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            566899999999999999999999999999999999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.8e-16  Score=141.62  Aligned_cols=187  Identities=20%  Similarity=0.295  Sum_probs=115.6

Q ss_pred             ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcE
Q 012027           21 IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKT  100 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~  100 (472)
                      ++.|.+|+.|++.+|. ++.++ ++..+++|++|++++|... .++. +..+++|++|+++++.++.++ .+.++++|+.
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n~i~-~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCceee-cccc-ccccccccccccccccccccc-cccccccccc
Confidence            4556677777777654 55664 3666777777777776432 2322 566677777777776666554 3566677777


Q ss_pred             EEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 012027          101 LSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFV  180 (472)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~  180 (472)
                      +.+++|................+.......  .....+..+++|+.|++++|.+.+  . ..++.+++|+.|+|++|.++
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--L-TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccchhccccchhhhhchhhhh--chhhhhcccccccccccccccccc--c-hhhcccccceecccCCCccC
Confidence            777666533322211111111111111111  122335677889999999888753  2 33788899999999999988


Q ss_pred             cCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEc
Q 012027          181 TLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVN  219 (472)
Q Consensus       181 ~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~  219 (472)
                      .+|. ++.+++|+.|++++| +++.++.+  .++|+.|++.
T Consensus       187 ~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             CChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            8874 788899999999998 46666542  2456666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.7e-16  Score=138.30  Aligned_cols=161  Identities=22%  Similarity=0.333  Sum_probs=132.1

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      +++|++|+++++.|..++. ++.+++|++|++++|+ +..++. +.++++|++|++++|.. ..++ .++++++|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCccc-cccCCCcCcCcccccc-ccCccc-ccCCccccccccccccc-cccc-ccccccccccccc
Confidence            3678999999999998864 8899999999999985 677765 88999999999999754 4454 4788999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      +++.+..++ .+..+++|+.|++++|...                        .++.+..+++|+.|++.+|.+.+  ++
T Consensus       114 ~~~~~~~~~-~~~~l~~L~~L~l~~n~l~------------------------~~~~l~~~~~L~~L~l~~n~l~~--l~  166 (199)
T d2omxa2         114 FNNQITDID-PLKNLTNLNRLELSSNTIS------------------------DISALSGLTSLQQLNFSSNQVTD--LK  166 (199)
T ss_dssp             CSSCCCCCG-GGTTCTTCSEEECCSSCCC------------------------CCGGGTTCTTCSEEECCSSCCCC--CG
T ss_pred             ccccccccc-ccchhhhhHHhhhhhhhhc------------------------ccccccccccccccccccccccC--Cc
Confidence            999888765 4778999999999987621                        23446778899999999998864  44


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCccee
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKL  195 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L  195 (472)
                       .++.+++|+.|++++|+++.++ .+.++++|+.|
T Consensus       167 -~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 -PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             -cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence             4889999999999999999887 57788888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.3e-15  Score=147.88  Aligned_cols=123  Identities=26%  Similarity=0.322  Sum_probs=63.8

Q ss_pred             cCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC------------
Q 012027           93 FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP------------  160 (472)
Q Consensus        93 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp------------  160 (472)
                      ..+++|+.|++++|..........+.....+....+.+.  .++.+..+++|+.|+++++.+..  ++            
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--CCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccC--CCCcccccccCCEeeccCcccCC--CCcccccccccccc
Confidence            345677777777776333222222222222333333222  23345566666666666665532  11            


Q ss_pred             ---------CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCC--CCCccEEEEccC
Q 012027          161 ---------SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQL--PPNVEKVRVNGC  221 (472)
Q Consensus       161 ---------~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~l--p~~L~~L~~~~c  221 (472)
                               ..+..+++++.|++++|+++.++ .+..+++|+.|++++|+ ++.++.+  .++|+.|++++|
T Consensus       292 ~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         292 LNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCC
Confidence                     22445566666666666666655 35666666666666663 3333322  135666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=7.6e-16  Score=139.17  Aligned_cols=165  Identities=20%  Similarity=0.254  Sum_probs=135.2

Q ss_pred             cCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCCCCccccCCCCCcEE
Q 012027           22 ELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRCPPSSIFLMKNLKTL  101 (472)
Q Consensus        22 ~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L  101 (472)
                      ..+.+|+.|++++|. ++.++. +..+++|++|++++|. +..++. ++.+++|++|++++|.++.+| .+..+++|+.|
T Consensus        43 ~~L~~L~~L~l~~~~-i~~l~~-l~~l~~L~~L~L~~n~-i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          43 NELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred             HHhcCccEEECcCCC-CCCchh-HhhCCCCCEEeCCCcc-ccCccc-cccCccccccccccccccccc-ccccccccccc
Confidence            468899999999976 667764 8889999999999985 555664 688999999999999999987 48899999999


Q ss_pred             EecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc
Q 012027          102 SFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVT  181 (472)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~  181 (472)
                      ++.+|...                        .++.+..++.|+.+++++|.+.+   +..+..+++|+.+++++|.++.
T Consensus       118 ~l~~~~~~------------------------~~~~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         118 SLEHNGIS------------------------DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             ECTTSCCC------------------------CCGGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCC
T ss_pred             cccccccc------------------------ccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence            99988632                        23446778899999999998863   3457789999999999999998


Q ss_pred             CCcccCCCCCcceeeccCccccccCCCCC--CCccEEEEcc
Q 012027          182 LPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNG  220 (472)
Q Consensus       182 lp~~i~~l~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~~~  220 (472)
                      ++. +..+++|+.|++++|+ ++.++.+.  ++|+.|++++
T Consensus       171 i~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             ccc-ccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            874 8899999999999984 66666443  4677777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.61  E-value=2.2e-14  Score=138.67  Aligned_cols=210  Identities=24%  Similarity=0.223  Sum_probs=137.5

Q ss_pred             CccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            3 CLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         3 ~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      +|++|+|++++++++|+.   +++|++|++++|+ ++.+|..   +.+|+.|++++|. +..+++.   .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC-Ccccccc---hhhhhhhhhhhcc-cchhhhh---ccccccccccc
Confidence            688999999999999964   5789999999864 8899975   4578899998864 4445432   24689999999


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCC--------------------CCCCcchhhhcc----------------
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSAS--------------------CYLPFPINLMRR----------------  126 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~--------------------~~~~~~~~l~~~----------------  126 (472)
                      |.+..+|. ++++++|+.|+++++........                    ........+...                
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~  186 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLES  186 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             cccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccc
Confidence            99998885 67889999999887753211100                    000000000000                


Q ss_pred             --cCCCCcCCCCCCCCCCCcCEEeccCCCCCC------------------------------------------------
Q 012027          127 --SSDLGALMLPSLSGLGSLTKLDLSDCGLGE------------------------------------------------  156 (472)
Q Consensus       127 --~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~------------------------------------------------  156 (472)
                        ........++....++.|+.+++++|....                                                
T Consensus       187 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~  266 (353)
T d1jl5a_         187 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL  266 (353)
T ss_dssp             EECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence              000011123334556666777666543210                                                


Q ss_pred             -------CCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEccCCCcccccc
Q 012027          157 -------GAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       157 -------~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~~c~sL~~~~~  229 (472)
                             ..++.....+++|++|+|++|+++.+|..   +++|+.|++++|. ++.+|+++++|+.|++++|+ |+.++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             cccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCc
Confidence                   00001112246889999999998888864   5788888998874 77888888889999998886 777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.9e-15  Score=134.76  Aligned_cols=187  Identities=21%  Similarity=0.272  Sum_probs=144.2

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |.+|+.|++.+++|+.++ .++++++|++|++++|. +..+++ +.++++|++|++++|.. ..++ .+..+++|+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCce-eecccc-ccccccccccccccccc-cccc-ccccccccccccc
Confidence            357999999999999995 59999999999999986 555654 78999999999999754 4454 4788999999999


Q ss_pred             eCccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCC
Q 012027           81 SGTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIP  160 (472)
Q Consensus        81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp  160 (472)
                      +++.+..++. +...+.++.+.++++................+....+...  ..+.+.++++|+.|++++|.+.+  ++
T Consensus       115 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~Ls~n~l~~--l~  189 (227)
T d1h6ua2         115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--DLTPLANLSKLTTLKADDNKISD--IS  189 (227)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--CCGGGTTCTTCCEEECCSSCCCC--CG
T ss_pred             ccccccccch-hccccchhhhhchhhhhchhhhhccccccccccccccccc--cchhhcccccceecccCCCccCC--Ch
Confidence            9988776543 5667888888887776444333333333333333333322  23447889999999999999864  54


Q ss_pred             CCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccC
Q 012027          161 SDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLED  199 (472)
Q Consensus       161 ~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~  199 (472)
                      . ++.+++|++|+|++|+++.+| .++.+++|+.|++++
T Consensus       190 ~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             h-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            4 889999999999999999998 489999999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.2e-14  Score=138.66  Aligned_cols=214  Identities=20%  Similarity=0.226  Sum_probs=144.4

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeC
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISG   82 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~   82 (472)
                      ++.++-++.+++++|+.+.  ++|++|+|++|+ ++.+|+ ++.++++|++|++++|......|..+.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3567777778999998764  789999999986 888886 688999999999999887766678899999999999999


Q ss_pred             ccCCCCCccccCCCCCcEEEecCCCCCCCCCC--CCCCcc--------------------------hhhhcccCCCCcCC
Q 012027           83 TAIRCPPSSIFLMKNLKTLSFRGCNGPPSSAS--CYLPFP--------------------------INLMRRSSDLGALM  134 (472)
Q Consensus        83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~--~~~~~~--------------------------~~l~~~~~~~~~~~  134 (472)
                      |.++.+|..+  ...|+.|.+.++........  ......                          ..+....+...  .
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~--~  164 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--T  164 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC--S
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc--c
Confidence            9999998754  45788888877653221000  000000                          00001111111  1


Q ss_pred             CCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccCCCCCcceeeccCccccccCCC-C--C
Q 012027          135 LPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTL-PASINCLFNLEKLKLEDCKRLQSLPQ-L--P  210 (472)
Q Consensus       135 l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~l-p~~i~~l~~L~~L~l~~c~~L~~lp~-l--p  210 (472)
                      ++ ...+++|+.|++++|... ...+..+..++.++.|++++|.+..+ |..+..+++|+.|+|++| .++.+|. +  .
T Consensus       165 l~-~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l  241 (305)
T d1xkua_         165 IP-QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH  241 (305)
T ss_dssp             CC-SSCCTTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC
T ss_pred             cC-cccCCccCEEECCCCcCC-CCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccc
Confidence            11 123456777777776654 34556677777778888887777765 445677788888888887 4556653 1  2


Q ss_pred             CCccEEEEccCCCccccc
Q 012027          211 PNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       211 ~~L~~L~~~~c~sL~~~~  228 (472)
                      ++|+.|+++++ ++++++
T Consensus       242 ~~L~~L~Ls~N-~i~~i~  258 (305)
T d1xkua_         242 KYIQVVYLHNN-NISAIG  258 (305)
T ss_dssp             SSCCEEECCSS-CCCCCC
T ss_pred             cCCCEEECCCC-ccCccC
Confidence            47777777775 466654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-14  Score=133.90  Aligned_cols=191  Identities=19%  Similarity=0.281  Sum_probs=149.9

Q ss_pred             EEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee-Cc
Q 012027            6 ELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS-GT   83 (472)
Q Consensus         6 ~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~-~~   83 (472)
                      .++.++.+++++|..+.  +.+++|+|++|+ ++.+|. ++.++++|++|+++++......+..+..+..++.+... .+
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCc-CCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            45667778999997654  678999999986 788885 68899999999999987666566677778899998775 45


Q ss_pred             cCCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCC
Q 012027           84 AIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSD  162 (472)
Q Consensus        84 ~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~  162 (472)
                      .+..+ |..+.++++|+.|++++|.....                      ....+....+|+.+++++|++.. ..+..
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~----------------------~~~~~~~~~~L~~l~l~~N~l~~-i~~~~  148 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQEL----------------------GPGLFRGLAALQYLYLQDNALQA-LPDDT  148 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------------CTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccc----------------------cccccchhcccchhhhccccccc-cChhH
Confidence            67766 56688999999999998863221                      12236677889999999999963 33456


Q ss_pred             CCCCCCCCEEEcCCCCCccCC-cccCCCCCcceeeccCccccccCCCC---CCCccEEEEccCC
Q 012027          163 IGNLHSLKTLYLSKNNFVTLP-ASINCLFNLEKLKLEDCKRLQSLPQL---PPNVEKVRVNGCA  222 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp-~~i~~l~~L~~L~l~~c~~L~~lp~l---p~~L~~L~~~~c~  222 (472)
                      +..+++|+.|++++|+++.+| ..+..+++|+.|++++|+.....|..   .++|+.|+++++.
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence            889999999999999999775 46788999999999999766544432   3588899988764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=142.61  Aligned_cols=184  Identities=22%  Similarity=0.345  Sum_probs=109.8

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDIS   81 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~   81 (472)
                      ++++.|+++++.++.+++ +...++|+.|++++|. ++.+| .+..+++|+.|++++|. +..++. ++.+++|++|+++
T Consensus       197 ~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~  271 (384)
T d2omza2         197 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLG  271 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECC
T ss_pred             cccceeeccCCccCCCCc-ccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCc-cCCCCc-ccccccCCEeecc
Confidence            344555555555554443 3444555555555543 33333 24445555555555543 222322 4445555555555


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPS  161 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~  161 (472)
                      ++.+..++. +..+..++.+.+..|..                      .  .++.+..+++++.|++++|++.+  ++ 
T Consensus       272 ~~~l~~~~~-~~~~~~l~~l~~~~n~l----------------------~--~~~~~~~~~~l~~L~ls~n~l~~--l~-  323 (384)
T d2omza2         272 ANQISNISP-LAGLTALTNLELNENQL----------------------E--DISPISNLKNLTYLTLYFNNISD--IS-  323 (384)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCC----------------------S--CCGGGGGCTTCSEEECCSSCCSC--CG-
T ss_pred             CcccCCCCc-ccccccccccccccccc----------------------c--cccccchhcccCeEECCCCCCCC--Cc-
Confidence            555554442 44455555555544431                      1  23346677889999999998864  44 


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCC--CCccEEEEcc
Q 012027          162 DIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLP--PNVEKVRVNG  220 (472)
Q Consensus       162 ~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp--~~L~~L~~~~  220 (472)
                      .+..+++|++|++++|+++.+| .+..+++|+.|++++|+ ++.++.+.  ++|+.|++++
T Consensus       324 ~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~-l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         324 PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCC
T ss_pred             ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCc-CCCChhhccCCCCCEeeCCC
Confidence            3788899999999999998887 58889999999998875 45554322  4666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.57  E-value=1.3e-13  Score=133.14  Aligned_cols=70  Identities=33%  Similarity=0.463  Sum_probs=61.2

Q ss_pred             CCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCccccccCCCCCCCccEEEEc
Q 012027          141 LGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCKRLQSLPQLPPNVEKVRVN  219 (472)
Q Consensus       141 l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~lp~~L~~L~~~  219 (472)
                      +++|++|++++|++..  +|..   +++|+.|+|++|+++.+|..   +++|+.|++++|+ ++.+|++|.+|+.|.+.
T Consensus       283 ~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             CCCCCEEECCCCccCc--cccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            5789999999999964  7754   57899999999999999964   5689999999997 89999999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.3e-14  Score=128.84  Aligned_cols=218  Identities=18%  Similarity=0.213  Sum_probs=121.4

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhhh-hhhCCCCCCCEEeeeC
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENLL-ETVGQVESLEELDISG   82 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~   82 (472)
                      +.++.++.+++++|..+-  +++++|+|++|+ ++.+|. .+.++++|++|++++|.....++ ..+..++++++|.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            455556666666665442  466677776654 556654 35666677777776665554443 3355666666666654


Q ss_pred             -ccCCCC-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchh---hhcccCCCCcCCCCCCCCCC-CcCEEeccCCCCCC
Q 012027           83 -TAIRCP-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPIN---LMRRSSDLGALMLPSLSGLG-SLTKLDLSDCGLGE  156 (472)
Q Consensus        83 -~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~l~~l~~l~-~L~~L~L~~~~l~~  156 (472)
                       +.+..+ +..+..+++|+.|++.++................   ...............+.+++ .++.|+++++.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             344433 3445666677777776665332222111111111   11111122221222244443 67788888887753


Q ss_pred             CCCCCCCCCCCCCCEE-EcCCCCCccCCcc-cCCCCCcceeeccCccccccCCC-CCCCccEEEEccCCCccccc
Q 012027          157 GAIPSDIGNLHSLKTL-YLSKNNFVTLPAS-INCLFNLEKLKLEDCKRLQSLPQ-LPPNVEKVRVNGCASLVTLL  228 (472)
Q Consensus       157 ~~lp~~l~~l~~L~~L-~Ls~n~~~~lp~~-i~~l~~L~~L~l~~c~~L~~lp~-lp~~L~~L~~~~c~sL~~~~  228 (472)
                        ++.......+++.+ .+++|+++.+|.. +.++++|+.|++++|+ ++.+|. ...++..|...++.+|+.+|
T Consensus       168 --i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         168 --IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             --ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSC
T ss_pred             --cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCC
Confidence              66555555565555 4566778888764 5778888888888876 556654 34556666655555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.7e-16  Score=146.76  Aligned_cols=85  Identities=18%  Similarity=0.208  Sum_probs=43.3

Q ss_pred             CCcCCcEEEeecCcCCCc-cCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc-cCC--CCCccccCCCCC
Q 012027           23 LLSGLVQLTLKGCKNLVR-LPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT-AIR--CPPSSIFLMKNL   98 (472)
Q Consensus        23 ~L~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~--~lp~~i~~l~~L   98 (472)
                      ...+|++|++++|..... ++..+..+++|++|++++|......+..++.+++|++|+++++ .++  .+......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            344566666665542211 2333445556666666666544445555555666666666553 333  122223345566


Q ss_pred             cEEEecCCC
Q 012027           99 KTLSFRGCN  107 (472)
Q Consensus        99 ~~L~L~~~~  107 (472)
                      ++|++++|.
T Consensus       124 ~~L~ls~c~  132 (284)
T d2astb2         124 DELNLSWCF  132 (284)
T ss_dssp             CEEECCCCT
T ss_pred             ccccccccc
Confidence            666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-11  Score=112.80  Aligned_cols=195  Identities=14%  Similarity=0.161  Sum_probs=129.4

Q ss_pred             cEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEeeeCccCCCC--CccccCCCCCcEEEec
Q 012027           28 VQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELDISGTAIRCP--PSSIFLMKNLKTLSFR  104 (472)
Q Consensus        28 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~l--p~~i~~l~~L~~L~L~  104 (472)
                      +.++.++ ..++.+|..+.  +++++|++++|. +..+|. .+.++++|++|++++|.+...  +..+.+++.++.|.+.
T Consensus        11 ~~i~c~~-~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEES-CSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeC-CCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            5677776 45889998663  689999999975 566765 578999999999999988753  3457789999999988


Q ss_pred             CCCCCCCCCCC---CCCcchhhhcccCCCCcCCCCC-CCCCCCcCEEeccCCCCCCCCCC-CCCCCC-CCCCEEEcCCCC
Q 012027          105 GCNGPPSSASC---YLPFPINLMRRSSDLGALMLPS-LSGLGSLTKLDLSDCGLGEGAIP-SDIGNL-HSLKTLYLSKNN  178 (472)
Q Consensus       105 ~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l-~~L~~L~Ls~n~  178 (472)
                      .+.........   .++....+....+.+....... +..+..+..+...++.+..  ++ ..+..+ ..++.|++++|.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~--i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--IERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE--ECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccccccccccccccc--ccccccccccccceeeeccccc
Confidence            76544432222   2233333434444333211111 3334444444555555532  32 334444 478889999999


Q ss_pred             CccCCcccCCCCCcceeeccCccccccCCC--C--CCCccEEEEccCCCcccccc
Q 012027          179 FVTLPASINCLFNLEKLKLEDCKRLQSLPQ--L--PPNVEKVRVNGCASLVTLLG  229 (472)
Q Consensus       179 ~~~lp~~i~~l~~L~~L~l~~c~~L~~lp~--l--p~~L~~L~~~~c~sL~~~~~  229 (472)
                      ++.++..+....+++.+....+..++.+|.  +  .++|+.|++.++. ++.++.
T Consensus       165 l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         165 IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            998888877788888887777777888875  2  2688899988764 665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=5.9e-13  Score=117.98  Aligned_cols=129  Identities=21%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccC-cccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLP-SNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGT   83 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~   83 (472)
                      +.++.+++++++||..+.  +++++|+|++|.....++ ..+.++++|++|++++|......+..+..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            345555556666665442  455666666654322232 23445555666666555544444555555555555555555


Q ss_pred             cCCCCCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCC
Q 012027           84 AIRCPPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDI  163 (472)
Q Consensus        84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l  163 (472)
                      .+..+|..                                             .|.++++|++|+|++|.+. ...|..|
T Consensus        89 ~l~~l~~~---------------------------------------------~F~~l~~L~~L~L~~N~l~-~i~~~~f  122 (192)
T d1w8aa_          89 KIKEISNK---------------------------------------------MFLGLHQLKTLNLYDNQIS-CVMPGSF  122 (192)
T ss_dssp             CCCEECSS---------------------------------------------SSTTCTTCCEEECCSSCCC-EECTTSS
T ss_pred             cccccCHH---------------------------------------------HHhCCCcccccccCCcccc-ccCHHHh
Confidence            55544332                                             1444555555555555554 2223446


Q ss_pred             CCCCCCCEEEcCCCCCcc
Q 012027          164 GNLHSLKTLYLSKNNFVT  181 (472)
Q Consensus       164 ~~l~~L~~L~Ls~n~~~~  181 (472)
                      ..+++|++|+|++|.+..
T Consensus       123 ~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccccccccccc
Confidence            666777777777776653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.2e-14  Score=132.01  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CccEEEeeCCCCe--eccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchh--hhhhhCCCCCCCEE
Q 012027            3 CLRELLLDKTDIK--EMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFEN--LLETVGQVESLEEL   78 (472)
Q Consensus         3 ~L~~L~L~~~~l~--~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~--lp~~l~~l~~L~~L   78 (472)
                      +|++|+|+++.+.  .+...+..+++|++|+|++|......+..+.++++|++|++++|..+..  +......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            3444444444433  1233334444555555544432223333344444455555544443321  22223334445555


Q ss_pred             eeeCc
Q 012027           79 DISGT   83 (472)
Q Consensus        79 ~L~~~   83 (472)
                      ++++|
T Consensus       127 ~ls~c  131 (284)
T d2astb2         127 NLSWC  131 (284)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            55443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.6e-12  Score=105.32  Aligned_cols=99  Identities=23%  Similarity=0.321  Sum_probs=89.0

Q ss_pred             cEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEeeeCcc
Q 012027            5 RELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDISGTA   84 (472)
Q Consensus         5 ~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~   84 (472)
                      |+|+|++|+|+.++. ++.+++|++|++++|+ ++.+|..++.+++|++|++++|. +..+| .++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            689999999999985 9999999999999986 88999889999999999999975 56676 48999999999999999


Q ss_pred             CCCCCc--cccCCCCCcEEEecCCC
Q 012027           85 IRCPPS--SIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        85 i~~lp~--~i~~l~~L~~L~L~~~~  107 (472)
                      |..+|.  .+..+++|+.|++++|.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            998764  57889999999999986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=112.26  Aligned_cols=103  Identities=18%  Similarity=0.098  Sum_probs=89.4

Q ss_pred             CCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEee
Q 012027            2 ECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELDI   80 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L   80 (472)
                      .+|++|+|++|.|+.++..+..+++|+.|+|++|. +..++. +..+++|++|++++|. +..+|. .+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCccCC-cccCcchhhhhccccc-ccCCCcccccccccccccee
Confidence            46899999999999998767889999999999986 788864 8899999999999986 455554 4567999999999


Q ss_pred             eCccCCCCCc--cccCCCCCcEEEecCCC
Q 012027           81 SGTAIRCPPS--SIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        81 ~~~~i~~lp~--~i~~l~~L~~L~L~~~~  107 (472)
                      ++|.+..++.  .+..+++|+.|++++|.
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccccccccccccccccccccchhhcCCCc
Confidence            9999998764  67889999999999986

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.4e-12  Score=103.89  Aligned_cols=46  Identities=22%  Similarity=0.187  Sum_probs=25.8

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCC
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLP  183 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp  183 (472)
                      +..+++|+.|++++|.+.+..-...++.+++|+.|++++|.++..+
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            4444555555555555543111234666777777777777776443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-12  Score=110.21  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=19.0

Q ss_pred             CCCCCCCCEEEcCCCCCccCCc----ccCCCCCcceee
Q 012027          163 IGNLHSLKTLYLSKNNFVTLPA----SINCLFNLEKLK  196 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp~----~i~~l~~L~~L~  196 (472)
                      +..+++|++|++++|.++.+|.    .+..+++|+.||
T Consensus       108 l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         108 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            4555666666666666655553    244555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=5.1e-11  Score=105.16  Aligned_cols=125  Identities=18%  Similarity=0.174  Sum_probs=90.7

Q ss_pred             CCEEEccCCCCchhhhhhhCCCCCCCEEeeeCccCCC-C-CccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccC
Q 012027           51 LKTLNLLGCFKFENLLETVGQVESLEELDISGTAIRC-P-PSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSS  128 (472)
Q Consensus        51 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~  128 (472)
                      .++++.++ ..+..+|..+  .+++++|+|++|.|+. + +..+.++++|+.|++++|.....                 
T Consensus        10 ~~~v~Cs~-~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-----------------   69 (192)
T d1w8aa_          10 GTTVDCTG-RGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----------------   69 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----------------
T ss_pred             CCEEEEeC-CCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-----------------
Confidence            34566665 3455677655  2577888888888764 3 34456788888888877763321                 


Q ss_pred             CCCcCCCCCCCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccCCCCCcceeeccCcc
Q 012027          129 DLGALMLPSLSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPA-SINCLFNLEKLKLEDCK  201 (472)
Q Consensus       129 ~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~-~i~~l~~L~~L~l~~c~  201 (472)
                           ....+..+++|++|+|++|++.. ..|..|..+++|++|+|++|.++.+|. .+..+++|++|+|++++
T Consensus        70 -----~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          70 -----EPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             -----CTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             -----cccccccccccceeeeccccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence                 12236778889999999998863 335568999999999999999998865 46889999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.08  E-value=2.1e-13  Score=121.57  Aligned_cols=39  Identities=31%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             CCCCCCCCEEEcCCCCCccCC--cccCCCCCcceeeccCcc
Q 012027          163 IGNLHSLKTLYLSKNNFVTLP--ASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       163 l~~l~~L~~L~Ls~n~~~~lp--~~i~~l~~L~~L~l~~c~  201 (472)
                      +..+++|+.|+|++|.++.++  ..+..+++|+.|++++|+
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            344445555555555554443  234455555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1e-09  Score=93.19  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             ccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCc-ccCCCCCCCEEEccCCCCchhh-hhhhCCCCCCCEEeee
Q 012027            4 LRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPS-NINSLKSLKTLNLLGCFKFENL-LETVGQVESLEELDIS   81 (472)
Q Consensus         4 L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~   81 (472)
                      .+.++..++++.++|..+..+++|+.|++.+++.++.++. .+.++++|+.|++++|. +..+ |..+..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceecc
Confidence            4668888888888998899999999999998877888875 58899999999999976 4555 6778999999999999


Q ss_pred             CccCCCCCccccCCCCCcEEEecCCC
Q 012027           82 GTAIRCPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        82 ~~~i~~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      +|.++.+|..+....+|+.|+|++|.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCCcccChhhhccccccccccCCCc
Confidence            99999999988877789999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.87  E-value=3.7e-11  Score=106.71  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=78.6

Q ss_pred             CCCccEEEeeCCCCeeccccccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCchhhhhhhCCCCCCCEEee
Q 012027            1 MECLRELLLDKTDIKEMPLSIELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKFENLLETVGQVESLEELDI   80 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L   80 (472)
                      |++|++|+|++|.|+.++ .+..+++|++|+|++|. ++.+|.....+.+|++|++++|. +..++ .+..+++|++|++
T Consensus        47 L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHHHHHSSEEEE
T ss_pred             ccccceeECcccCCCCcc-cccCCccccChhhcccc-ccccccccccccccccccccccc-ccccc-ccccccccccccc
Confidence            467888888888888876 48888888888888875 67777655555678888888874 44454 3667888888888


Q ss_pred             eCccCCCCC--ccccCCCCCcEEEecCCC
Q 012027           81 SGTAIRCPP--SSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~  107 (472)
                      ++|.|..++  ..+..+++|+.|++++|.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccchhccccccccccCCCccceeecCCCc
Confidence            888888775  357788888888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.7e-09  Score=87.64  Aligned_cols=63  Identities=29%  Similarity=0.312  Sum_probs=43.9

Q ss_pred             CCCCCCcCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccCCCCCcceeeccCcc
Q 012027          138 LSGLGSLTKLDLSDCGLGEGAIPSDIGNLHSLKTLYLSKNNFVTLPASINCLFNLEKLKLEDCK  201 (472)
Q Consensus       138 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~Ls~n~~~~lp~~i~~l~~L~~L~l~~c~  201 (472)
                      |.++++|+.|++++|++.. .-|..|..+++|++|+|++|+++.+|..+.....|+.|+|++|+
T Consensus        52 f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             hccccccCcceeeccccCC-cccccccccccccceeccCCCCcccChhhhccccccccccCCCc
Confidence            5566667777777777652 22455777788888888888888877766655667777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.69  E-value=8.5e-10  Score=106.22  Aligned_cols=84  Identities=20%  Similarity=0.322  Sum_probs=58.9

Q ss_pred             CCCCCcCEEeccCCCCCCC----CCCCCCCCCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCcccc------
Q 012027          139 SGLGSLTKLDLSDCGLGEG----AIPSDIGNLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKRL------  203 (472)
Q Consensus       139 ~~l~~L~~L~L~~~~l~~~----~lp~~l~~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~~L------  203 (472)
                      ...+.|+.|+++.|.+...    .+...+..+++|+.|+|++|.+.     .+...+..+++|+.|++++|..-      
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3456799999999887531    13345677889999999999875     35566778899999999998621      


Q ss_pred             --ccCCCCC-CCccEEEEccCC
Q 012027          204 --QSLPQLP-PNVEKVRVNGCA  222 (472)
Q Consensus       204 --~~lp~lp-~~L~~L~~~~c~  222 (472)
                        +.+...+ ..|+.|+++++.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHhhhccCCCCCEEECCCCc
Confidence              1122222 468888888763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.59  E-value=1.2e-09  Score=105.17  Aligned_cols=204  Identities=14%  Similarity=0.070  Sum_probs=131.1

Q ss_pred             CCCccEEEeeCCCCee-----------ccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh-
Q 012027            1 MECLRELLLDKTDIKE-----------MPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN-   64 (472)
Q Consensus         1 l~~L~~L~L~~~~l~~-----------lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~-   64 (472)
                      +++|+.|+++++.+..           +...+...++|+.|+|++|..-.    .+...+...++|+.|++++|..... 
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            3688999998764332           23346678899999999986322    2444455678999999999864221 


Q ss_pred             ---h---------hhhhCCCCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCCCCCCCCCCCCCcchhhhccc
Q 012027           65 ---L---------LETVGQVESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRS  127 (472)
Q Consensus        65 ---l---------p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~  127 (472)
                         +         .......+.|+.|+++++.+..     +...+...+.|+.|++++|......       ....    
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g-------~~~~----  206 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG-------IEHL----  206 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH-------HHHH----
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccc-------cccc----
Confidence               1         1122457789999999987762     3444567889999999988632100       0000    


Q ss_pred             CCCCcCCCCCCCCCCCcCEEeccCCCCCCC---CCCCCCCCCCCCCEEEcCCCCCcc-----CCcccCC--CCCcceeec
Q 012027          128 SDLGALMLPSLSGLGSLTKLDLSDCGLGEG---AIPSDIGNLHSLKTLYLSKNNFVT-----LPASINC--LFNLEKLKL  197 (472)
Q Consensus       128 ~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~---~lp~~l~~l~~L~~L~Ls~n~~~~-----lp~~i~~--l~~L~~L~l  197 (472)
                            ....+..+++|+.|++++|.+...   .+...+..+++|++|+|++|.+..     +-..+..  .+.|+.|++
T Consensus       207 ------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~l  280 (344)
T d2ca6a1         207 ------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  280 (344)
T ss_dssp             ------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             ------hhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEEC
Confidence                  011245678899999999877421   133456778899999999998862     2223333  467999999


Q ss_pred             cCcccc--------ccCCCCCCCccEEEEccC
Q 012027          198 EDCKRL--------QSLPQLPPNVEKVRVNGC  221 (472)
Q Consensus       198 ~~c~~L--------~~lp~lp~~L~~L~~~~c  221 (472)
                      ++|..-        +.+..-.+.|+.|+++++
T Consensus       281 s~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         281 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            998621        111111346778877664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.5e-06  Score=85.30  Aligned_cols=199  Identities=20%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             ccEEEeeCCCCee-----ccccccCCcCCcEEEeecCcCCC-----ccCcccCCCCCCCEEEccCCCCchh----hhhhh
Q 012027            4 LRELLLDKTDIKE-----MPLSIELLSGLVQLTLKGCKNLV-----RLPSNINSLKSLKTLNLLGCFKFEN----LLETV   69 (472)
Q Consensus         4 L~~L~L~~~~l~~-----lp~si~~L~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~~l   69 (472)
                      +..|.+..+.+..     +...+...+.++.+++.++....     .++........|+.|++++|.....    +...+
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l  279 (460)
T d1z7xw1         200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  279 (460)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccc
Confidence            4556666665542     22335667888999998875322     1233344567899999998865432    34455


Q ss_pred             CCCCCCCEEeeeCccCCC-----CCccc-cCCCCCcEEEecCCCCCCCCCCCCCCcchhhhcccCCCCcCCCCC-CCCCC
Q 012027           70 GQVESLEELDISGTAIRC-----PPSSI-FLMKNLKTLSFRGCNGPPSSASCYLPFPINLMRRSSDLGALMLPS-LSGLG  142 (472)
Q Consensus        70 ~~l~~L~~L~L~~~~i~~-----lp~~i-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~~l~  142 (472)
                      ...+.++.+++++|.+..     +...+ .....|+.+++++|..... ..      .            .+.. +...+
T Consensus       280 ~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~-~~------~------------~l~~~~~~~~  340 (460)
T d1z7xw1         280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-CC------S------------HFSSVLAQNR  340 (460)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-GH------H------------HHHHHHHHCS
T ss_pred             cccccccccccccccccccccchhhccccccccccccccccccchhhh-hh------h------------hccccccccc
Confidence            667889999999888752     11111 2345788999888752210 00      0            0000 23345


Q ss_pred             CcCEEeccCCCCCCC---CCCCCCC-CCCCCCEEEcCCCCCc-----cCCcccCCCCCcceeeccCcccc--------cc
Q 012027          143 SLTKLDLSDCGLGEG---AIPSDIG-NLHSLKTLYLSKNNFV-----TLPASINCLFNLEKLKLEDCKRL--------QS  205 (472)
Q Consensus       143 ~L~~L~L~~~~l~~~---~lp~~l~-~l~~L~~L~Ls~n~~~-----~lp~~i~~l~~L~~L~l~~c~~L--------~~  205 (472)
                      +|++|+|++|.+.+.   .++..+. ..+.|++|+|++|+++     .++..+..+++|++|+|++|+.-        +.
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  420 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES  420 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence            789999999887421   1233333 4567999999999886     35556777889999999988521        22


Q ss_pred             CCCCCCCccEEEEccC
Q 012027          206 LPQLPPNVEKVRVNGC  221 (472)
Q Consensus       206 lp~lp~~L~~L~~~~c  221 (472)
                      +..-...|+.|++.++
T Consensus       421 l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         421 VRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HTSTTCCCCEEECTTC
T ss_pred             HHhCCCccCEEECCCC
Confidence            3223346788887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.1e-06  Score=82.84  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=80.6

Q ss_pred             CCccEEEeeCCCCee--ccccccCCcCCcEEEeecCcCCC-----ccCcccCCCCCCCEEEccCCCCch----hhhhhhC
Q 012027            2 ECLRELLLDKTDIKE--MPLSIELLSGLVQLTLKGCKNLV-----RLPSNINSLKSLKTLNLLGCFKFE----NLLETVG   70 (472)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~si~~L~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~Ls~c~~l~----~lp~~l~   70 (472)
                      .+|++|+|++++|+.  +..-+..+++|+.|+|++|. +.     .++..+..+++|++|+|++|....    .+.+.+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            478999999999984  34446778999999999996 43     345566788999999999986432    2344443


Q ss_pred             C-CCCCCEEeeeCccCCC-----CCccccCCCCCcEEEecCCC
Q 012027           71 Q-VESLEELDISGTAIRC-----PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        71 ~-l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  107 (472)
                      . ..+|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            2 3579999999999874     45567889999999999885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=2e-05  Score=66.23  Aligned_cols=81  Identities=27%  Similarity=0.214  Sum_probs=57.7

Q ss_pred             cccCCcCCcEEEeecCcCCCccC---cccCCCCCCCEEEccCCCCchhhhh-hhCCCCCCCEEeeeCccCCCCCc-----
Q 012027           20 SIELLSGLVQLTLKGCKNLVRLP---SNINSLKSLKTLNLLGCFKFENLLE-TVGQVESLEELDISGTAIRCPPS-----   90 (472)
Q Consensus        20 si~~L~~L~~L~L~~c~~l~~lp---~~i~~L~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~-----   90 (472)
                      ....+++|++|+|++|+ ++.++   ..+..+++|++|++++|. +..+++ ......+|+.|++++|.+.....     
T Consensus        60 ~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          60 IEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            34678999999999986 55543   445678999999999965 444443 22234579999999998875432     


Q ss_pred             ---cccCCCCCcEEE
Q 012027           91 ---SIFLMKNLKTLS  102 (472)
Q Consensus        91 ---~i~~l~~L~~L~  102 (472)
                         .+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               255688999885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=7.3e-06  Score=69.09  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             ccCCcCCcEEEeecCcCCCccCcccCCCCCCCEEEccCCCCc--hhhhhhhCCCCCCCEEeeeCccCCCCCc-cccCCCC
Q 012027           21 IELLSGLVQLTLKGCKNLVRLPSNINSLKSLKTLNLLGCFKF--ENLLETVGQVESLEELDISGTAIRCPPS-SIFLMKN   97 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~   97 (472)
                      +..+..+..++...+ ....++.....+++|++|+|++|...  ..++..+..+++|+.|++++|.|..++. ......+
T Consensus        38 l~~~~~~~~l~~~~~-~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~  116 (162)
T d1koha1          38 LVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTTCCCCTTSHHH-HHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC
T ss_pred             hhhccchhhcchhhh-HhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccc
Confidence            444444444444432 23334433456889999999998643  2355667889999999999999998865 2223457


Q ss_pred             CcEEEecCCCC
Q 012027           98 LKTLSFRGCNG  108 (472)
Q Consensus        98 L~~L~L~~~~~  108 (472)
                      |+.|++.+|..
T Consensus       117 L~~L~L~~Npl  127 (162)
T d1koha1         117 LEELWLDGNSL  127 (162)
T ss_dssp             CSSCCCTTSTT
T ss_pred             cceeecCCCCc
Confidence            89999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.95  E-value=0.00028  Score=59.27  Aligned_cols=105  Identities=15%  Similarity=0.087  Sum_probs=68.1

Q ss_pred             CCccEEEeeCC-CCe-----eccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCchh----hhh
Q 012027            2 ECLRELLLDKT-DIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFEN----LLE   67 (472)
Q Consensus         2 ~~L~~L~L~~~-~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~   67 (472)
                      ++|++|+|+++ .+.     .+-..+...+.|+.|+|++|..-.    .+...+...+.|++|+|++|.....    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57888888864 454     233346667788888888875321    2333344567788888888854432    455


Q ss_pred             hhCCCCCCCEEeeeCccCCCC--------CccccCCCCCcEEEecCC
Q 012027           68 TVGQVESLEELDISGTAIRCP--------PSSIFLMKNLKTLSFRGC  106 (472)
Q Consensus        68 ~l~~l~~L~~L~L~~~~i~~l--------p~~i~~l~~L~~L~L~~~  106 (472)
                      .+...++|++|+++++.+..+        ...+..-++|+.|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            677778888888887765543        233444577888877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.52  E-value=0.00074  Score=56.52  Aligned_cols=86  Identities=14%  Similarity=0.169  Sum_probs=65.7

Q ss_pred             cCCcCCcEEEeecCcCCCc-----cCcccCCCCCCCEEEccCCCCch----hhhhhhCCCCCCCEEeeeCccCCC-----
Q 012027           22 ELLSGLVQLTLKGCKNLVR-----LPSNINSLKSLKTLNLLGCFKFE----NLLETVGQVESLEELDISGTAIRC-----   87 (472)
Q Consensus        22 ~~L~~L~~L~L~~c~~l~~-----lp~~i~~L~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~-----   87 (472)
                      .+.+.|+.|+|++++.+..     +-..+...++|++|+|++|..-.    .+.+.+...+.|++|+|++|.+..     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4568999999998665542     33456677899999999986543    355666778999999999998873     


Q ss_pred             CCccccCCCCCcEEEecCCC
Q 012027           88 PPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        88 lp~~i~~l~~L~~L~L~~~~  107 (472)
                      +-..+...++|++|+++++.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence            33456777899999998875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.84  E-value=0.0015  Score=54.40  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=67.3

Q ss_pred             CCccEEEeeC-CCCe-----eccccccCCcCCcEEEeecCcCCC----ccCcccCCCCCCCEEEccCCCCch----hhhh
Q 012027            2 ECLRELLLDK-TDIK-----EMPLSIELLSGLVQLTLKGCKNLV----RLPSNINSLKSLKTLNLLGCFKFE----NLLE   67 (472)
Q Consensus         2 ~~L~~L~L~~-~~l~-----~lp~si~~L~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~Ls~c~~l~----~lp~   67 (472)
                      ++|++|+|++ +.|+     .+-..+...++|+.|+|++|..-.    .+-..+...++|+.|++++|....    .+.+
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            6788888887 4454     233445677888888888875211    133334556788888888876543    2456


Q ss_pred             hhCCCCCCCEEeee--CccCC-----CCCccccCCCCCcEEEecCC
Q 012027           68 TVGQVESLEELDIS--GTAIR-----CPPSSIFLMKNLKTLSFRGC  106 (472)
Q Consensus        68 ~l~~l~~L~~L~L~--~~~i~-----~lp~~i~~l~~L~~L~L~~~  106 (472)
                      .+...++|+.++|+  ++.+.     .+...+...+.|+.|++..+
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            67777888876664  44554     23445566788888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.50  E-value=0.012  Score=48.51  Aligned_cols=87  Identities=14%  Similarity=0.159  Sum_probs=64.6

Q ss_pred             ccCCcCCcEEEeecCcCCC-----ccCcccCCCCCCCEEEccCCCCchh----hhhhhCCCCCCCEEeeeCccCC-----
Q 012027           21 IELLSGLVQLTLKGCKNLV-----RLPSNINSLKSLKTLNLLGCFKFEN----LLETVGQVESLEELDISGTAIR-----   86 (472)
Q Consensus        21 i~~L~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~-----   86 (472)
                      ..+.++|++|+|++++.+.     .+-..+...++|++|++++|..-..    +.+.+...++|+.|+++++.+.     
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3567899999999865554     2444566788999999999865332    4556677889999999998876     


Q ss_pred             CCCccccCCCCCcEEEecCCC
Q 012027           87 CPPSSIFLMKNLKTLSFRGCN  107 (472)
Q Consensus        87 ~lp~~i~~l~~L~~L~L~~~~  107 (472)
                      .+-..+...++|+.++|..+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~  113 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQS  113 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCS
T ss_pred             HHHHHHHhCccccEEeeccCC
Confidence            244567778899988886543