Citrus Sinensis ID: 012060
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7R7 | 460 | BTB/POZ domain-containing | yes | no | 0.957 | 0.982 | 0.615 | 1e-167 | |
| Q9FN67 | 458 | BTB/POZ domain-containing | no | no | 0.900 | 0.927 | 0.328 | 3e-54 | |
| O65555 | 441 | BTB/POZ domain-containing | no | no | 0.879 | 0.941 | 0.255 | 9e-21 | |
| Q9ZUH1 | 441 | BTB/POZ domain-containing | no | no | 0.879 | 0.941 | 0.238 | 4e-16 | |
| Q6DG99 | 237 | BTB/POZ domain-containing | no | no | 0.209 | 0.417 | 0.346 | 2e-06 | |
| A3KMV1 | 704 | SH3KBP1-binding protein 1 | yes | no | 0.201 | 0.134 | 0.398 | 3e-06 | |
| Q6P7W2 | 704 | SH3KBP1-binding protein 1 | yes | no | 0.184 | 0.123 | 0.404 | 4e-06 | |
| Q8TBC3 | 707 | SH3KBP1-binding protein 1 | yes | no | 0.184 | 0.123 | 0.404 | 4e-06 | |
| P0C5J9 | 704 | SH3KBP1-binding protein 1 | yes | no | 0.184 | 0.123 | 0.404 | 5e-06 | |
| Q8N5I3 | 272 | Potassium channel regulat | no | no | 0.197 | 0.341 | 0.386 | 1e-05 |
| >sp|Q9S7R7|Y3903_ARATH BTB/POZ domain-containing protein At3g09030 OS=Arabidopsis thaliana GN=At3g09030 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/458 (61%), Positives = 358/458 (78%), Gaps = 6/458 (1%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLR 74
G RVKLNVGG++FET STIQS PDSLL ALS S NP+FIDRDP++F+V+L+LLR
Sbjct: 7 GKRVKLNVGGEIFETNASTIQSSCPDSLLAALSTSTSHGSNPVFIDRDPEIFAVILNLLR 66
Query: 75 SNRLPSTASR-FSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPST 133
+ RLP+ +S FSKQEL DEA+YYG++S L+ AM PPPL G DAS+VST+ PAAD +PS
Sbjct: 67 TGRLPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLGFDASLVSTIVPAADGVPSA 126
Query: 134 FTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIH 193
TA++ D SLWIAHGGQISVYDW+LSH+ TVRTHL++ITSI VW + AA+GS +SG+H
Sbjct: 127 LTATAGDASLWIAHGGQISVYDWSLSHAGTVRTHLNDITSICRVWGEAAAIGSGSASGLH 186
Query: 194 FYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQ 253
FYDLS R++ S HWTDP DPRI++A V A+ADS VF+S C H+ENSVL IDKSTLQ
Sbjct: 187 FYDLSGGRYIGSTHWTDPEDPRIHKARVAAVADSEGGVFASFDCLHRENSVLQIDKSTLQ 246
Query: 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWET 313
+++ IG+QSG S+K KL W+PA G+++GSA+ G FG SGY+R+WDPRS +VWET
Sbjct: 247 VAAVIGQQSGNSAKTTVPEKLRWLPAKGLLVGSAVQRGVFGCSGYIRIWDPRSRNIVWET 306
Query: 314 NEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSM 373
NEPGSGRS RFGD+ AD+DVDV++ LFK+CSKSGD+ MAD+R LGEDPWVYM D+NP
Sbjct: 307 NEPGSGRSTRFGDALADMDVDVEDSILFKVCSKSGDLGMADIRKLGEDPWVYMSDENPGA 366
Query: 374 ISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433
+ + G ++HCY+ QV RGG+LEVWS V+E ++ + + RRNFVD+ +DS
Sbjct: 367 WKA--GDGGGYSVVHCYRKQVLAARGGALEVWSSVKE---KTSGDPIRRRNFVDKEDDSK 421
Query: 434 RGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCV 471
RG IS+I+AGG+RLFVSRE +EG+EVWE+S+ SGVV V
Sbjct: 422 RGMISKIEAGGDRLFVSRECMEGVEVWETSSFSGVVSV 459
|
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FN67|Y5133_ARATH BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 239/459 (52%), Gaps = 34/459 (7%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLRSNR 77
V +NVGG++F+TT T+ G DSLL L+ + F+DRDPD+FSVLL +LR+
Sbjct: 13 VSINVGGRIFQTTKQTLSLAGTDSLLSQLATETTR-----FVDRDPDLFSVLLYILRTGN 67
Query: 78 LPSTASRFSKQELADEALYYGIDSQLKSAMS-PPPLQGIDASIVSTVRPAADALPSTFTA 136
LP+ + F ++L DE+ YYGI+S L ++S + D ++ PS+ +
Sbjct: 68 LPARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLRRSRILQLNGRDSPSSISP 127
Query: 137 SSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYD 196
+ G L +AHG +I+ +DW+L TV T+ + S+ + V A G+ G+ D
Sbjct: 128 TVIGGGLHVAHGSKITSFDWSLRQKSTVLTNFSAVDSLLEISPGVLAAGATDFPGLQIID 187
Query: 197 LSSSRHV-ASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKE-NSVLLIDKSTLQI 254
L + V + +W + + +TV AI S +F+S + NS+++ D S+L
Sbjct: 188 LDNGGFVRTTLNWENVTRS---SSTVQAIGSSHEFLFTSFESSRRNSNSIMVYDLSSLLP 244
Query: 255 SSEIGRQS--GAS-SKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVW 311
SEI GA + KL WI + +++ S G +G++R WD RS +VW
Sbjct: 245 VSEIDHCEIYGADIDSAIPSTKLKWIQSCNLLMVSGSHTSPSGVNGHIRFWDVRSRNMVW 304
Query: 312 ETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYM-EDK 369
E E D F+DV V + +FK+ SG++ ADLR+LG +DPWV + E+K
Sbjct: 305 EIKEA--------QDCFSDVTVSDNLSAVFKVGVTSGEVFYADLRSLGTKDPWVCLGEEK 356
Query: 370 NPSMISSSGNNNGENKLIHCYKNQVFV-GRGGSLEVWSRVREGRNRSCS-----EGLFRR 423
++ G I Y N VF +G +E+WS V G + S E +FR+
Sbjct: 357 KRNL----NERRGVGSKIESYGNHVFCSSKGSGIELWSEVITGLVGNASRDVLEERVFRK 412
Query: 424 NFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWES 462
N + ++ DSG I+ + GGNR+FV+R+D + ++VW+S
Sbjct: 413 NSLGKLADSGENKITGLAFGGNRMFVTRKDQQSVQVWQS 451
|
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65555|Y4094_ARATH BTB/POZ domain-containing protein At4g30940 OS=Arabidopsis thaliana GN=At4g30940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 118/462 (25%), Positives = 193/462 (41%), Gaps = 47/462 (10%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYAL--SNRQSDEPNPIFIDRDPDVFSVLLSLL 73
DR+K NVGG++FETT +T+ + G DS AL N +P +FIDR+PD F+VLL LL
Sbjct: 6 DRIKFNVGGRIFETTATTLANAGRDSFFGALFDENWNLSQPGDLFIDRNPDCFAVLLDLL 65
Query: 74 RSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPST 133
R+ L + ++ L EA++YG+ L++A P D + + R P
Sbjct: 66 RTGDL-NIPPNIPERLLHKEAMFYGLIDHLRTAKWGP----FDGNRLHLSRSVTGIAPGD 120
Query: 134 FTA--SSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSI------RHVWSDVAAVG 185
TA + DG IAHG + V+DW L T+ + + V S +G
Sbjct: 121 GTAIRAGPDGGCCIAHGSVVHVFDWMLEEHPTINLDYQRVNDVGWIDSGNIVLSACERLG 180
Query: 186 -SDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TTVFSSLVCPHKENS 243
D G+ SSS + D ++ + A++ SP + +F+S E
Sbjct: 181 RGDGGMGL----FSSSSGELRYKFQVSHDNQVKSYSAGALSFSPDSKIFTSCKGRSNEYG 236
Query: 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303
+ + D+ST + G S + KL W+ +L + + + Y+ + D
Sbjct: 237 IGVWDQSTGKQVDFFYESPGWSLGD--ADKLQWLSGKNCLLVATLF--PRKDNCYISLLD 292
Query: 304 PRSGEVVWETNEPG---SGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGE 360
R +VW ++ G R D+ A ++E + ++ D+ DLR G
Sbjct: 293 FREKNMVWSWSDIGFLTMAEEKRVRDAIA-----MEESNSICVVNEFEDLGFIDLRMDGG 347
Query: 361 DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGL 420
V ++ M S + KL ++ Q+F S+ V+ C
Sbjct: 348 GSSVRWSSRSRLMKSKMPDEPCYPKLA-LHEGQLFSSMNDSISVF----------CGSDW 396
Query: 421 FRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWES 462
R++ S G+I GG+RLF + +VWE+
Sbjct: 397 V---LTSRLKRSYGGSICDFSIGGDRLFALHSEENVFDVWET 435
|
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUH1|Y2424_ARATH BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 110/462 (23%), Positives = 194/462 (41%), Gaps = 47/462 (10%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSD----EPNPIFIDRDPDVFSVLLS 71
DR+K NVGG+LFETT +T+ + G DS AL + + + E + +F+DR+ D F+VLL
Sbjct: 6 DRIKFNVGGRLFETTATTLANAGRDSFFGALFDDEWNLSPLEDSILFVDRNSDCFAVLLD 65
Query: 72 LLRSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALP 131
LLR+ L + + ++ L EA +YG+ +++A P G + +V+ A
Sbjct: 66 LLRTGDL-NVPANIPERLLHREASFYGLLDHVRTA-KWGPFDGNRLRLSDSVKGIAPGDG 123
Query: 132 STFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGS----- 186
+ A D G +AHG + V+DW L + + + + SD + +
Sbjct: 124 TAIRAGPDGGCC-VAHGSVVHVFDWMLEEHSPINLDYQRVNDVGWIDSDNIVLSACEKLG 182
Query: 187 --DYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TTVFSSLVCPHKENS 243
D G+ SSS + + ++ T A++ SP +F+S E
Sbjct: 183 RGDGGMGL----FSSSSGDLRYKFQVCHENQVKSYTAGALSFSPDYEIFASCKGRSNEYG 238
Query: 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303
+ + D+ T + + G S + KL W+ +L + + + Y+ + D
Sbjct: 239 IGVWDQITGKQTDFFYESPGWSLGD--ADKLQWLNGKNCLLVATLF--PRKDNCYISLLD 294
Query: 304 PRSGEVVWETNEPGSGRS---ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGE 360
R +VW ++ GS + R D+ A +++ + ++ D+ DLR G
Sbjct: 295 FRDKNMVWSWSDIGSPMAIDEKRVRDAIA-----MEDSNSICVVNEFEDLGFIDLRMYGG 349
Query: 361 DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGL 420
V ++ M S + KL ++ Q+F S+ V+ C
Sbjct: 350 S--VRWSSRSKLMKSKMPDEPCYPKLA-LHEGQLFSSMNDSISVF----------CGPDW 396
Query: 421 FRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWES 462
R+ S G+I GG+RLF + +VWE+
Sbjct: 397 V---LTSRLRRSYGGSICDFSIGGDRLFALHSEENVFDVWET 435
|
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6DG99|KCTD6_DANRE BTB/POZ domain-containing protein KCTD6 OS=Danio rerio GN=kctd6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSN----RQSDEPNPIFIDRDPDVFSVLLSLL 73
V LNVGG L+ T++ST+Q PDS+L A+ D FIDRD +F +L+ L
Sbjct: 14 VTLNVGGHLYTTSISTLQR-YPDSMLGAMFRGDFPTTRDAQGNYFIDRDGTLFRYILNFL 72
Query: 74 RSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDA 117
R++ L L EA +Y I+ ++ P PL +D
Sbjct: 73 RTSELTLPVDFTELDLLRKEADFYQIEPLIQCLNDPKPLYPLDT 116
|
Danio rerio (taxid: 7955) |
| >sp|A3KMV1|SHKB1_BOVIN SH3KBP1-binding protein 1 OS=Bos taurus GN=SHKBP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 7 DHTPDR-QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNRQS---DEPNPIFIDR 61
D P R G+ + LNVGGK F T+ T+ + PDS +L S R S DE IFIDR
Sbjct: 9 DGVPGRGPPGEVIHLNVGGKRFSTSRQTL-TWIPDSFFSSLLSGRISTLKDETGAIFIDR 67
Query: 62 DPDVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDSQLK 104
DP VF+ +L+ LR+ L S L EA +YG+ ++
Sbjct: 68 DPTVFAPILNFLRTKELDPRGVHGS--SLLHEAQFYGLTPLVR 108
|
Bos taurus (taxid: 9913) |
| >sp|Q6P7W2|SHKB1_MOUSE SH3KBP1-binding protein 1 OS=Mus musculus GN=Shkbp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNRQS---DEPNPIFIDRDPDVFSVLL 70
G+ + LNVGGK F T+ T+ + PDS +L S R S DE IFIDRDP VF+ +L
Sbjct: 18 GEVIHLNVGGKRFSTSRQTL-TWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFAPIL 76
Query: 71 SLLRSNRLPSTASRFSKQELADEALYYGIDSQLK 104
+ LR+ L S L EA +YG+ ++
Sbjct: 77 NFLRTKELDPRGVHGSS--LLHEAQFYGLTPLVR 108
|
Mus musculus (taxid: 10090) |
| >sp|Q8TBC3|SHKB1_HUMAN SH3KBP1-binding protein 1 OS=Homo sapiens GN=SHKBP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNRQS---DEPNPIFIDRDPDVFSVLL 70
G+ + LNVGGK F T+ T+ + PDS +L S R S DE IFIDRDP VF+ +L
Sbjct: 18 GEVIHLNVGGKRFSTSRQTL-TWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFAPIL 76
Query: 71 SLLRSNRLPSTASRFSKQELADEALYYGIDSQLK 104
+ LR+ L S L EA +YG+ ++
Sbjct: 77 NFLRTKELDPRGVHGSS--LLHEAQFYGLTPLVR 108
|
Homo sapiens (taxid: 9606) |
| >sp|P0C5J9|SHKB1_RAT SH3KBP1-binding protein 1 OS=Rattus norvegicus GN=Shkbp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNRQS---DEPNPIFIDRDPDVFSVLL 70
G+ + LNVGGK F T+ T+ + PDS +L S R S DE IFIDRDP VF+ +L
Sbjct: 18 GEVIHLNVGGKRFSTSRQTL-TWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFAPIL 76
Query: 71 SLLRSNRLPSTASRFSKQELADEALYYGIDSQLK 104
+ LR+ L S L EA +YG+ ++
Sbjct: 77 NFLRTKELDPRGVHGSS--LLHEAQFYGLTPLVR 108
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8N5I3|KCNRG_HUMAN Potassium channel regulatory protein OS=Homo sapiens GN=KCNRG PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEP---NPIFIDRDPDVFSVLLSLLR 74
V LNVGGK+F T STI+ L L R + IF+DRD D+FS +L LR
Sbjct: 7 VTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSFILDFLR 66
Query: 75 SNR--LPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQ 113
+++ LP+ S + + L EAL+Y + S L ++P LQ
Sbjct: 67 THQLLLPTEFSDYLR--LQREALFYELRS-LVDLLNPYLLQ 104
|
Inhibits potassium fluxes in cells. May regulate Kv1 family channel proteins by retaining a fraction of channels in endomembranes. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | ||||||
| 225440640 | 475 | PREDICTED: BTB/POZ domain-containing pro | 0.963 | 0.957 | 0.683 | 0.0 | |
| 255581071 | 499 | protein binding protein, putative [Ricin | 0.980 | 0.927 | 0.693 | 0.0 | |
| 357509105 | 478 | SH3KBP1-binding protein [Medicago trunca | 0.985 | 0.972 | 0.658 | 0.0 | |
| 224140381 | 462 | predicted protein [Populus trichocarpa] | 0.978 | 1.0 | 0.679 | 1e-180 | |
| 449461785 | 476 | PREDICTED: BTB/POZ domain-containing pro | 0.963 | 0.955 | 0.645 | 1e-178 | |
| 297740234 | 483 | unnamed protein product [Vitis vinifera] | 0.915 | 0.894 | 0.653 | 1e-178 | |
| 449521912 | 480 | PREDICTED: BTB/POZ domain-containing pro | 0.963 | 0.947 | 0.638 | 1e-178 | |
| 356525309 | 470 | PREDICTED: BTB/POZ domain-containing pro | 0.991 | 0.995 | 0.624 | 1e-176 | |
| 15232005 | 460 | BTB/POZ domain-containing protein [Arabi | 0.957 | 0.982 | 0.615 | 1e-165 | |
| 297829436 | 454 | potassium channel tetramerization domain | 0.947 | 0.984 | 0.620 | 1e-164 |
| >gi|225440640|ref|XP_002279057.1| PREDICTED: BTB/POZ domain-containing protein At3g09030-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/462 (68%), Positives = 383/462 (82%), Gaps = 7/462 (1%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLRS 75
DR+KLNVGGKLFETT+STI+SGGPDSLL ALS R D+ NP+FIDRDP++FSVLLS+LR+
Sbjct: 16 DRIKLNVGGKLFETTISTIRSGGPDSLLQALSARPIDDSNPVFIDRDPEIFSVLLSVLRT 75
Query: 76 NRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPSTFT 135
NR+PSTA RFSKQEL DEALYYGI+S+LKSAM PPPL GIDAS+V+T+RPA+D LPS FT
Sbjct: 76 NRIPSTARRFSKQELTDEALYYGIESRLKSAMLPPPLSGIDASVVATIRPASDGLPSAFT 135
Query: 136 ASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFY 195
A + DGSLWIAHGGQIS YD NL+H+ T+RTH+++ITSIR +W DVAAVGSD ++G+H Y
Sbjct: 136 AGAGDGSLWIAHGGQISAYDCNLAHAGTIRTHINDITSIRRLWPDVAAVGSDTAAGLHIY 195
Query: 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQIS 255
D+S RHVASAHWTDPSDPRIY+A V+AIADSP +V++S C HKEN +L+IDKSTLQ+
Sbjct: 196 DISGGRHVASAHWTDPSDPRIYKALVSAIADSPNSVYASFYCRHKENCILVIDKSTLQVV 255
Query: 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315
SEIGRQSG S K M GKLT++P++ ++ SA+ GAFGYSG +R+WDPRSGEVVWET E
Sbjct: 256 SEIGRQSGNSMKTMGAGKLTYMPSSSLIFASAVTSGAFGYSGCIRLWDPRSGEVVWETTE 315
Query: 316 PGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMIS 375
PGSGRS RFGDSFADVDVD DE T+FK+CSKSGD+ MADLR LGEDPWVY+ D NPSM
Sbjct: 316 PGSGRSCRFGDSFADVDVDADESTMFKVCSKSGDVGMADLRKLGEDPWVYLRDNNPSMAH 375
Query: 376 SSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRS-----CSEGLFRRNFVDRVE 430
G ++ + +IHCY+ QVFV RGG LEVWS+V + SEG +RRN+VD+++
Sbjct: 376 KGGGDS--SSVIHCYRKQVFVARGGGLEVWSQVEDKETEEERENMVSEGSYRRNYVDKLD 433
Query: 431 DSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCVL 472
D RG I++++ GG+RLF+SREDVEGIEVWESSN SG V VL
Sbjct: 434 DLERGTITKMEGGGDRLFISREDVEGIEVWESSNFSGAVSVL 475
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581071|ref|XP_002531351.1| protein binding protein, putative [Ricinus communis] gi|223529049|gb|EEF31035.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/470 (69%), Positives = 382/470 (81%), Gaps = 7/470 (1%)
Query: 1 MDNVNSDHTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFID 60
MD + + ++ DR+KLNVGGKLFETT+ST+ SGGPDSLL LS R + P+PIFID
Sbjct: 1 MDAEIPNSSSGQRYSDRIKLNVGGKLFETTVSTLASGGPDSLLATLSTRAA--PDPIFID 58
Query: 61 RDPDVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIV 120
RDP++FSVLLSLLRS+R+PSTA+RFSKQELADEALYYGI+S LKSAMSPPPL GIDAS+V
Sbjct: 59 RDPEIFSVLLSLLRSDRIPSTATRFSKQELADEALYYGIESHLKSAMSPPPLSGIDASLV 118
Query: 121 STVRPAADALPSTFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSD 180
+T+RPA+D PS FTA SD GS+WIAHGGQIS YDWNLSHS T+RTHLD+ITSIR V +D
Sbjct: 119 TTLRPASDGFPSAFTADSD-GSIWIAHGGQISAYDWNLSHSSTIRTHLDDITSIRRVAAD 177
Query: 181 VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHK 240
+AAVGSD ++G+HFYD SRH+ S WTD +DPRIY+A V +IADS VF+S C H+
Sbjct: 178 IAAVGSDSAAGLHFYDFCGSRHLGSTQWTDRTDPRIYKARVCSIADSANQVFASFDCQHR 237
Query: 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300
EN +L+IDKSTLQI SEI RQ G+SSKN KLTW+ V++GSA+ GAFGYSGY+R
Sbjct: 238 ENCILVIDKSTLQIVSEIARQFGSSSKNTVPTKLTWLSNNSVIIGSAVTSGAFGYSGYIR 297
Query: 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGE 360
+WDPRS +VVWETNEPGSGRS+RFGDSFADVDVDV+ LFKICSKSGD+A+ADLR L E
Sbjct: 298 IWDPRSNDVVWETNEPGSGRSSRFGDSFADVDVDVENSCLFKICSKSGDLAVADLRKLEE 357
Query: 361 DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRS-CSEG 419
DPWVYMEDKNPSM S G +IHCY++QVFVGR GSLEVWS+V E S SEG
Sbjct: 358 DPWVYMEDKNPSMKFSGGLM---ESVIHCYRSQVFVGREGSLEVWSKVVEKERESFISEG 414
Query: 420 LFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVV 469
L+RRNFVD+V+DS RG I +I+ GGNRLFVSREDVEGIEVWESS SG V
Sbjct: 415 LYRRNFVDKVKDSERGIIRKIEGGGNRLFVSREDVEGIEVWESSYFSGAV 464
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509105|ref|XP_003624841.1| SH3KBP1-binding protein [Medicago truncatula] gi|87162860|gb|ABD28655.1| K+ channel tetramerisation [Medicago truncatula] gi|355499856|gb|AES81059.1| SH3KBP1-binding protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/474 (65%), Positives = 393/474 (82%), Gaps = 9/474 (1%)
Query: 6 SDHTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDV 65
S T D DR+KLNVGGKLFETTLSTI+SGGPDSLL+ALSNR S++PNP+FIDRDP++
Sbjct: 7 SQTTTDSNVTDRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNRFSNDPNPVFIDRDPEI 66
Query: 66 FSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRP 125
FSV LSLLR+N LPSTA RFSKQELADEAL+YGIDS L++A SPPP GIDASIV++VRP
Sbjct: 67 FSVFLSLLRTNHLPSTARRFSKQELADEALFYGIDSHLRNATSPPPFSGIDASIVASVRP 126
Query: 126 AADALPSTFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVG 185
A++ L STFTA+ ++GS+WIAHGGQ+S YDWNL HS TVRTHLD I SI VW ++AAVG
Sbjct: 127 ASEGLSSTFTAA-ENGSVWIAHGGQLSSYDWNLIHSATVRTHLDEINSICRVWPEIAAVG 185
Query: 186 SDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVL 245
++ +G+HFY+ S SRHV S HW+DPSDPRI++A V AI S +VF+S CPH+EN +L
Sbjct: 186 TESDAGLHFYNFSGSRHVGSVHWSDPSDPRIFKARVNAITASDNSVFASFDCPHRENCIL 245
Query: 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305
+DK+ LQI S++GRQSG +KNM GKLT++P TGV++GSA+ GAFGYSGY+R+WDPR
Sbjct: 246 EVDKAKLQIVSQLGRQSGNQAKNMVPGKLTFVPTTGVLVGSAVTGGAFGYSGYIRVWDPR 305
Query: 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVY 365
SGEVVWETNEPG+GRS+RFGDSF+ +DVDV++L LFK+CSKSGD+AMAD+R LG+DPWVY
Sbjct: 306 SGEVVWETNEPGAGRSSRFGDSFSAIDVDVEKLLLFKLCSKSGDLAMADMRRLGDDPWVY 365
Query: 366 MEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVRE------GRNR-SCSE 418
+++KNPS+ + G+ + + +++CYK QVFVGRGG LEVWSRV+E R+R S E
Sbjct: 366 LKEKNPSLWTDGGDGS-TSSVVNCYKGQVFVGRGGELEVWSRVKEVVECESERDRESDGE 424
Query: 419 GLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCVL 472
G++RRNFVD+ EDS +G I +I+ GG+RLF+SREDVEGIEVWESS+ +G + VL
Sbjct: 425 GVYRRNFVDKREDSEKGVIVKIEGGGDRLFISREDVEGIEVWESSHYAGAISVL 478
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140381|ref|XP_002323561.1| predicted protein [Populus trichocarpa] gi|222868191|gb|EEF05322.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 320/471 (67%), Positives = 387/471 (82%), Gaps = 9/471 (1%)
Query: 1 MDNVNSDHTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFID 60
M+N S+ T + DR+KLNVGGKLFETT+ST+QSGGPDSLL LS R +P IFID
Sbjct: 1 MENEISNSTANTLPSDRIKLNVGGKLFETTISTLQSGGPDSLLSTLSTRPGHDP--IFID 58
Query: 61 RDPDVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIV 120
RDP++FSVLLSLLRSNRLPSTA RFSKQELADEALYYGIDS ++ A+SPPPL GIDASIV
Sbjct: 59 RDPEIFSVLLSLLRSNRLPSTARRFSKQELADEALYYGIDSHIRDAISPPPLSGIDASIV 118
Query: 121 STVRPAADALPSTFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSD 180
ST+ PA+D L S+FTA++DDGS+ AHGGQIS YD NL+H TVRTHL++ITSIRHVW D
Sbjct: 119 STICPASDGLVSSFTAAADDGSVCTAHGGQISFYDHNLTHLSTVRTHLEDITSIRHVWPD 178
Query: 181 VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHK 240
VAAVGS+ ++GIHFY+ S++R++ S HWTD +DPRIY+A V++IADS + +F+S CPH+
Sbjct: 179 VAAVGSESAAGIHFYNFSTARYIESIHWTDSTDPRIYKARVSSIADSSSQIFASFDCPHR 238
Query: 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300
EN +L IDKSTLQISSEI RQSG +SKN GKLTW+P TG ++GS + GAFGYSGY+R
Sbjct: 239 ENCILSIDKSTLQISSEITRQSGGASKNTVPGKLTWLPETGALIGSVVTCGAFGYSGYIR 298
Query: 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGE 360
MWDPR+GEV+WET+EPGSGRS+RFGDSFADVDVDV LTLFK+CSKSGD+A+ADLR LG+
Sbjct: 299 MWDPRNGEVIWETSEPGSGRSSRFGDSFADVDVDVGGLTLFKVCSKSGDLAVADLRKLGD 358
Query: 361 DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGL 420
DPWVY+ +KNPSM G + ++HCYK+QVFVGR GSLEVWS+ N EGL
Sbjct: 359 DPWVYINEKNPSMRFIGG---ASSSVLHCYKSQVFVGRDGSLEVWSK----ENNGVGEGL 411
Query: 421 FRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCV 471
+RRNFVD+VEDS RG + +I+ GG+RLFVSRE+VEGIEVWESS SG + V
Sbjct: 412 YRRNFVDKVEDSNRGVVRKIEGGGDRLFVSRENVEGIEVWESSYFSGAILV 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461785|ref|XP_004148622.1| PREDICTED: BTB/POZ domain-containing protein At3g09030-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/463 (64%), Positives = 379/463 (81%), Gaps = 8/463 (1%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLRS 75
+R+KLNVGG+LFETT+STI+SGGP+SLLYALS R D+ NPIFIDRDP++FSVLLSLLR+
Sbjct: 16 ERIKLNVGGELFETTVSTIRSGGPESLLYALSYRSIDDRNPIFIDRDPEIFSVLLSLLRT 75
Query: 76 NRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPSTFT 135
NRLPS+A RFSKQEL+DEA++YGI++ A+SPPP GIDASIV+ VRP +D + S+FT
Sbjct: 76 NRLPSSARRFSKQELSDEAVFYGIETNFNLAISPPPFNGIDASIVANVRPTSDGVVSSFT 135
Query: 136 ASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFY 195
A++ DGS+W+AHGGQIS YD NL H T+RTHLD I+SIR VW ++AA+GS+ +SG+HFY
Sbjct: 136 AANGDGSIWLAHGGQISSYDRNLIHERTIRTHLDEISSIRRVWPEIAALGSNTTSGLHFY 195
Query: 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQIS 255
+ S RH+ S+HW+DP+DPRIY+A VTAIADSPT++F++ CPH+ENS+LLIDKS+L+I
Sbjct: 196 NFYSGRHIGSSHWSDPTDPRIYKARVTAIADSPTSIFAAFDCPHRENSILLIDKSSLKIK 255
Query: 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315
E+GRQ G+S+KN GKLTWIP + V+ GSA+ GAFGYSGY+R+WD RSG+VVWETNE
Sbjct: 256 CELGRQLGSSAKNSVAGKLTWIPESNVLFGSAVTCGAFGYSGYMRLWDARSGKVVWETNE 315
Query: 316 PGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMIS 375
PGSGRS+RFGDSFADVDVDV+ L + K+CSKSGD+ +ADLRNLG+DPWVY++DKNP M +
Sbjct: 316 PGSGRSSRFGDSFADVDVDVEGLKVLKVCSKSGDLGVADLRNLGDDPWVYLKDKNPGMGN 375
Query: 376 SSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGR------NRSCSEGLFRRNFVDRV 429
+S G N IHC++ +V VGR G LEVWS V EGR ++ SE L+ RN+VD+
Sbjct: 376 TSRKGIG-NVKIHCFRKEVLVGRDGELEVWSTV-EGRGSGDDESKGNSEELYCRNYVDKS 433
Query: 430 EDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCVL 472
EDS +G I I+ GG+RLFVSRE+ EGIEVWE+S SGV VL
Sbjct: 434 EDSEKGIIKEIEGGGDRLFVSRENAEGIEVWETSTFSGVRSVL 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740234|emb|CBI30416.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/462 (65%), Positives = 367/462 (79%), Gaps = 30/462 (6%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLRS 75
DR+KLNVGGKLFETT+STI+SGGPDSLL ALS R D+ NP+FIDRDP++FSVLLS+LR+
Sbjct: 47 DRIKLNVGGKLFETTISTIRSGGPDSLLQALSARPIDDSNPVFIDRDPEIFSVLLSVLRT 106
Query: 76 NRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPSTFT 135
NR+PSTA RFSKQEL DEALYYGI+S+LKSAM PPPL GIDAS+V+T+RPA+D LPS FT
Sbjct: 107 NRIPSTARRFSKQELTDEALYYGIESRLKSAMLPPPLSGIDASVVATIRPASDGLPSAFT 166
Query: 136 ASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFY 195
A + DGSLWIAHGGQIS YD NL+H+ T+RTH+++ITSIR +W DVAAVGSD ++G+H Y
Sbjct: 167 AGAGDGSLWIAHGGQISAYDCNLAHAGTIRTHINDITSIRRLWPDVAAVGSDTAAGLHIY 226
Query: 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQIS 255
D+S RHVASAHWTDPSDPRIY+A V+AIADSP +V++S C HKEN +L+IDKSTLQ+
Sbjct: 227 DISGGRHVASAHWTDPSDPRIYKALVSAIADSPNSVYASFYCRHKENCILVIDKSTLQVV 286
Query: 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315
SEIGRQSG S K M GKLT++P++ ++ SA+ GAFGYSG +R+WDPRSGEVVWET E
Sbjct: 287 SEIGRQSGNSMKTMGAGKLTYMPSSSLIFASAVTSGAFGYSGCIRLWDPRSGEVVWETTE 346
Query: 316 PGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMIS 375
PGSGRS RFGDSFADVDVD DE T+FK+CSKSGD+ MADLR+
Sbjct: 347 PGSGRSCRFGDSFADVDVDADESTMFKVCSKSGDVGMADLRD------------------ 388
Query: 376 SSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRS-----CSEGLFRRNFVDRVE 430
+ +IHCY+ QVFV RGG LEVWS+V + SEG +RRN+VD+++
Sbjct: 389 -------SSSVIHCYRKQVFVARGGGLEVWSQVEDKETEEERENMVSEGSYRRNYVDKLD 441
Query: 431 DSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCVL 472
D RG I++++ GG+RLF+SREDVEGIEVWESSN SG V VL
Sbjct: 442 DLERGTITKMEGGGDRLFISREDVEGIEVWESSNFSGAVSVL 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521912|ref|XP_004167973.1| PREDICTED: BTB/POZ domain-containing protein At3g09030-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/465 (63%), Positives = 377/465 (81%), Gaps = 10/465 (2%)
Query: 17 RVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLRSN 76
R+KLNVGG+LFETT+STI+SGGP+SLLYALS R D+ NPIFIDRDP++FSVLLSLLR+N
Sbjct: 17 RIKLNVGGELFETTVSTIRSGGPESLLYALSYRSIDDRNPIFIDRDPEIFSVLLSLLRTN 76
Query: 77 RLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPSTFTA 136
RLPS+A RFSKQEL+DEA++YGI++ A+SPPP GIDASIV+ VRP +D + S+FTA
Sbjct: 77 RLPSSARRFSKQELSDEAVFYGIETNFNLAISPPPFNGIDASIVANVRPTSDGVVSSFTA 136
Query: 137 SSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYD 196
++ DGS+W+AHGGQIS YD NL H T+RTHLD I+SIR VW ++AA+GS+ +SG+HFY+
Sbjct: 137 ANGDGSIWLAHGGQISSYDRNLIHERTIRTHLDEISSIRRVWPEIAALGSNTTSGLHFYN 196
Query: 197 LSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISS 256
S RH+ S+HW+DP+DPRIY+A VTAIADSPT++F++ CPH+ENS+LLIDKS+L+I
Sbjct: 197 FYSGRHIGSSHWSDPTDPRIYKARVTAIADSPTSIFAAFDCPHRENSILLIDKSSLKIKC 256
Query: 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316
E+GRQ G+S+KN GKLTWIP + V+ GSA+ GAFGYSGY+R+WD RSG+VVWETNEP
Sbjct: 257 ELGRQLGSSAKNSVAGKLTWIPESNVLFGSAVTCGAFGYSGYMRLWDARSGKVVWETNEP 316
Query: 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS 376
GSGRS+RFGDSFADVDVDV+ L + K+CSKSGD+ +ADLRNLG+DPWVY++DKNP M ++
Sbjct: 317 GSGRSSRFGDSFADVDVDVEGLKVLKVCSKSGDLGVADLRNLGDDPWVYLKDKNPGMGNT 376
Query: 377 SGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVR---------EGRNRSCSEGLFRRNFVD 427
S +G N IHC++N+V VGR G LEVWS V E ++ SE L+ RN+VD
Sbjct: 377 SRKGSG-NVKIHCFRNEVLVGRDGELEVWSTVEGRGRGRGSGEDESKGNSEELYCRNYVD 435
Query: 428 RVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCVL 472
+ EDS +G I I+ GG+RLFVSRE+ EGIEVWE+ SGV VL
Sbjct: 436 KNEDSEKGIIKEIEGGGDRLFVSRENAEGIEVWETCTFSGVRSVL 480
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525309|ref|XP_003531267.1| PREDICTED: BTB/POZ domain-containing protein At3g09030-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/474 (62%), Positives = 375/474 (79%), Gaps = 6/474 (1%)
Query: 1 MDNVNSDHTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFID 60
M+ ++ + + DR+KLNVGGKLFETT ST++SGGPDSLL+ALSNR+S +P+P+FID
Sbjct: 1 MEEESTSAESNPSSSDRIKLNVGGKLFETTFSTLRSGGPDSLLFALSNRRSADPSPVFID 60
Query: 61 RDPDVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIV 120
RDP++FSVLLSLLR++ LPS A RFSK ELADEAL+YGIDS L++A +PPP GIDA++
Sbjct: 61 RDPEIFSVLLSLLRTSHLPSAARRFSKHELADEALFYGIDSHLRAAAAPPPFSGIDAALS 120
Query: 121 STVRPAADALPSTFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSD 180
+++RPA++ LPS+F AS G +WIAHGGQIS YD L+H+ TVRTHLD I SI VW +
Sbjct: 121 ASLRPASEGLPSSFVASPS-GGVWIAHGGQISCYDPILTHAATVRTHLDEIDSICRVWPE 179
Query: 181 VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHK 240
+AAVGS +G+HFY+ S SRHV S HWTDP DPRI++A+V AI S +VF+S CPH+
Sbjct: 180 IAAVGSKSDTGLHFYNFSGSRHVGSVHWTDPLDPRIFKASVNAITSSSNSVFASFDCPHR 239
Query: 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300
EN ++ +DK L I+++ RQSG +KNM KLTWIPATGV++GSA+ GAFGYSGYVR
Sbjct: 240 ENCIIEVDKEKLLIANQFARQSGNQAKNMVPRKLTWIPATGVLVGSAVTGGAFGYSGYVR 299
Query: 301 MWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359
+WDPRSG+VVWETNEP GSGRS+RFGDSFADV+ DV+ L LFK+CSKSGD+AMAD+R L
Sbjct: 300 LWDPRSGDVVWETNEPGGSGRSSRFGDSFADVEADVEGLLLFKLCSKSGDLAMADMRFLK 359
Query: 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRN-RSCSE 418
+DPWVYM++KNPS++S N ++HCY+ QVFV R G+LEVWSR + N +E
Sbjct: 360 DDPWVYMKEKNPSLVSC---GEVRNSVVHCYRGQVFVAREGALEVWSRAEQKENSEGNAE 416
Query: 419 GLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCVL 472
G FRRNFVD+ EDS RG I +I+ GG+RLFVSREDVEGIEVWESS+ +G + VL
Sbjct: 417 GFFRRNFVDKREDSERGVIKKIEGGGDRLFVSREDVEGIEVWESSHSAGAISVL 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232005|ref|NP_187515.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75194078|sp|Q9S7R7.1|Y3903_ARATH RecName: Full=BTB/POZ domain-containing protein At3g09030 gi|5923668|gb|AAD56319.1|AC009326_6 hypothetical protein [Arabidopsis thaliana] gi|6403485|gb|AAF07825.1|AC010871_1 hypothetical protein [Arabidopsis thaliana] gi|109946639|gb|ABG48498.1| At3g09030 [Arabidopsis thaliana] gi|332641189|gb|AEE74710.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/458 (61%), Positives = 358/458 (78%), Gaps = 6/458 (1%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLR 74
G RVKLNVGG++FET STIQS PDSLL ALS S NP+FIDRDP++F+V+L+LLR
Sbjct: 7 GKRVKLNVGGEIFETNASTIQSSCPDSLLAALSTSTSHGSNPVFIDRDPEIFAVILNLLR 66
Query: 75 SNRLPSTASR-FSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPST 133
+ RLP+ +S FSKQEL DEA+YYG++S L+ AM PPPL G DAS+VST+ PAAD +PS
Sbjct: 67 TGRLPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLGFDASLVSTIVPAADGVPSA 126
Query: 134 FTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIH 193
TA++ D SLWIAHGGQISVYDW+LSH+ TVRTHL++ITSI VW + AA+GS +SG+H
Sbjct: 127 LTATAGDASLWIAHGGQISVYDWSLSHAGTVRTHLNDITSICRVWGEAAAIGSGSASGLH 186
Query: 194 FYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQ 253
FYDLS R++ S HWTDP DPRI++A V A+ADS VF+S C H+ENSVL IDKSTLQ
Sbjct: 187 FYDLSGGRYIGSTHWTDPEDPRIHKARVAAVADSEGGVFASFDCLHRENSVLQIDKSTLQ 246
Query: 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWET 313
+++ IG+QSG S+K KL W+PA G+++GSA+ G FG SGY+R+WDPRS +VWET
Sbjct: 247 VAAVIGQQSGNSAKTTVPEKLRWLPAKGLLVGSAVQRGVFGCSGYIRIWDPRSRNIVWET 306
Query: 314 NEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSM 373
NEPGSGRS RFGD+ AD+DVDV++ LFK+CSKSGD+ MAD+R LGEDPWVYM D+NP
Sbjct: 307 NEPGSGRSTRFGDALADMDVDVEDSILFKVCSKSGDLGMADIRKLGEDPWVYMSDENPGA 366
Query: 374 ISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433
+ + G ++HCY+ QV RGG+LEVWS V+E ++ + + RRNFVD+ +DS
Sbjct: 367 WKA--GDGGGYSVVHCYRKQVLAARGGALEVWSSVKE---KTSGDPIRRRNFVDKEDDSK 421
Query: 434 RGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCV 471
RG IS+I+AGG+RLFVSRE +EG+EVWE+S+ SGVV V
Sbjct: 422 RGMISKIEAGGDRLFVSRECMEGVEVWETSSFSGVVSV 459
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829436|ref|XP_002882600.1| potassium channel tetramerization domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328440|gb|EFH58859.1| potassium channel tetramerization domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/453 (62%), Positives = 356/453 (78%), Gaps = 6/453 (1%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVLLSLLR 74
G+RVKLNVGG++FET STIQS PDSLL ALS S NP+FIDRDP++F+V+L+LLR
Sbjct: 7 GERVKLNVGGEIFETNASTIQSSCPDSLLAALSTPTSHGSNPVFIDRDPEIFAVILNLLR 66
Query: 75 SNRLPSTASR-FSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPST 133
+ RLP+ +S FSKQEL DEA+YYG++S L+ AM PPPL G DAS+VST+ PAAD +PS
Sbjct: 67 TGRLPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLGFDASLVSTIVPAADGVPSA 126
Query: 134 FTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIH 193
TA++ D SLWIAHGGQISVYDW+LSH+ TVRTHL++ITSI VWS+ AA+GS +SG+H
Sbjct: 127 LTATAGDASLWIAHGGQISVYDWSLSHAGTVRTHLNDITSICRVWSEAAAIGSGSASGLH 186
Query: 194 FYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQ 253
FYDLS R+V S HWTDP DPRI++A V AIADS VF+S C H+ENS+L IDKSTLQ
Sbjct: 187 FYDLSGGRYVGSTHWTDPEDPRIHKARVAAIADSVGGVFASFDCLHRENSILQIDKSTLQ 246
Query: 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWET 313
+++ IG+QSG S+K KL W+P G+++GSA+ G FG SGY+R+WDPRS +VWET
Sbjct: 247 VAAVIGQQSGNSAKTTVPEKLRWLPTNGLLVGSAVQRGVFGCSGYIRIWDPRSRNIVWET 306
Query: 314 NEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSM 373
+EPGSGRS RFGD+ AD+DVDV+EL LFK+CSKSGD+ MAD+R LGEDPWVYM D+NP
Sbjct: 307 SEPGSGRSTRFGDALADMDVDVEELILFKVCSKSGDLGMADIRKLGEDPWVYMSDENPG- 365
Query: 374 ISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433
+ + G ++HCY+ QV RGG+LEVWS V+E ++ + + RRNFVD+ +DS
Sbjct: 366 -AWKAGDGGGYSVVHCYRKQVLAARGGALEVWSSVKE---KTSVDPIRRRNFVDKEDDSK 421
Query: 434 RGAISRIDAGGNRLFVSREDVEGIEVWESSNLS 466
RG IS+I+AGG+RLFVSRE +EG+EVWE+SN S
Sbjct: 422 RGMISKIEAGGDRLFVSREFMEGVEVWETSNFS 454
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | ||||||
| TAIR|locus:2095279 | 460 | AT3G09030 [Arabidopsis thalian | 0.957 | 0.982 | 0.604 | 9.8e-151 | |
| TAIR|locus:2177861 | 458 | AT5G41330 [Arabidopsis thalian | 0.900 | 0.927 | 0.322 | 6.3e-53 | |
| TAIR|locus:2126719 | 441 | AT4G30940 [Arabidopsis thalian | 0.798 | 0.854 | 0.243 | 1.4e-16 | |
| TAIR|locus:2047540 | 441 | AT2G24240 [Arabidopsis thalian | 0.794 | 0.850 | 0.229 | 8.3e-14 | |
| UNIPROTKB|E9PK99 | 71 | KCTD21 "BTB/POZ domain-contain | 0.105 | 0.704 | 0.472 | 0.0003 | |
| UNIPROTKB|E9PMS5 | 116 | KCTD21 "BTB/POZ domain-contain | 0.105 | 0.431 | 0.472 | 0.0003 | |
| UNIPROTKB|F5H497 | 175 | KCTD10 "BTB/POZ domain-contain | 0.262 | 0.708 | 0.302 | 0.00038 | |
| WB|WBGene00015112 | 207 | B0281.5 [Caenorhabditis elegan | 0.319 | 0.729 | 0.263 | 0.00038 | |
| UNIPROTKB|O16612 | 207 | B0281.5 "Protein B0281.5, isof | 0.319 | 0.729 | 0.263 | 0.00038 |
| TAIR|locus:2095279 AT3G09030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1471 (522.9 bits), Expect = 9.8e-151, P = 9.8e-151
Identities = 277/458 (60%), Positives = 351/458 (76%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVXXXXXX 74
G RVKLNVGG++FET STIQS PDSLL ALS S NP+FIDRDP++F+V
Sbjct: 7 GKRVKLNVGGEIFETNASTIQSSCPDSLLAALSTSTSHGSNPVFIDRDPEIFAVILNLLR 66
Query: 75 XXXXPSTASR-FSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALPST 133
P+ +S FSKQEL DEA+YYG++S L+ AM PPPL G DAS+VST+ PAAD +PS
Sbjct: 67 TGRLPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLGFDASLVSTIVPAADGVPSA 126
Query: 134 FTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIH 193
TA++ D SLWIAHGGQISVYDW+LSH+ TVRTHL++ITSI VW + AA+GS +SG+H
Sbjct: 127 LTATAGDASLWIAHGGQISVYDWSLSHAGTVRTHLNDITSICRVWGEAAAIGSGSASGLH 186
Query: 194 FYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQ 253
FYDLS R++ S HWTDP DPRI++A V A+ADS VF+S C H+ENSVL IDKSTLQ
Sbjct: 187 FYDLSGGRYIGSTHWTDPEDPRIHKARVAAVADSEGGVFASFDCLHRENSVLQIDKSTLQ 246
Query: 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWET 313
+++ IG+QSG S+K KL W+PA G+++GSA+ G FG SGY+R+WDPRS +VWET
Sbjct: 247 VAAVIGQQSGNSAKTTVPEKLRWLPAKGLLVGSAVQRGVFGCSGYIRIWDPRSRNIVWET 306
Query: 314 NEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSM 373
NEPGSGRS RFGD+ AD+DVDV++ LFK+CSKSGD+ MAD+R LGEDPWVYM D+NP
Sbjct: 307 NEPGSGRSTRFGDALADMDVDVEDSILFKVCSKSGDLGMADIRKLGEDPWVYMSDENPGA 366
Query: 374 ISSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433
+ G+ G + ++HCY+ QV RGG+LEVWS V+E ++ + + RRNFVD+ +DS
Sbjct: 367 WKA-GDGGGYS-VVHCYRKQVLAARGGALEVWSSVKE---KTSGDPIRRRNFVDKEDDSK 421
Query: 434 RGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVVCV 471
RG IS+I+AGG+RLFVSRE +EG+EVWE+S+ SGVV V
Sbjct: 422 RGMISKIEAGGDRLFVSRECMEGVEVWETSSFSGVVSV 459
|
|
| TAIR|locus:2177861 AT5G41330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 148/459 (32%), Positives = 234/459 (50%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVXXXXXXXXX 77
V +NVGG++F+TT T+ G DSLL L+ + F+DRDPD+FSV
Sbjct: 13 VSINVGGRIFQTTKQTLSLAGTDSLLSQLATETTR-----FVDRDPDLFSVLLYILRTGN 67
Query: 78 XPSTASRFSKQELADEALYYGIDSQLKSAMS-PPPLQGIDASIVSTVRPAADALPSTFTA 136
P+ + F ++L DE+ YYGI+S L ++S + D ++ PS+ +
Sbjct: 68 LPARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLRRSRILQLNGRDSPSSISP 127
Query: 137 SSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYD 196
+ G L +AHG +I+ +DW+L TV T+ + S+ + V A G+ G+ D
Sbjct: 128 TVIGGGLHVAHGSKITSFDWSLRQKSTVLTNFSAVDSLLEISPGVLAAGATDFPGLQIID 187
Query: 197 LSSSRHVASA-HWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKE-NSVLLIDKSTLQI 254
L + V + +W + + +TV AI S +F+S + NS+++ D S+L
Sbjct: 188 LDNGGFVRTTLNWENVTRSS---STVQAIGSSHEFLFTSFESSRRNSNSIMVYDLSSLLP 244
Query: 255 SSEIGRQS--GASSKNMAVG-KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVW 311
SEI GA + KL WI + +++ S G +G++R WD RS +VW
Sbjct: 245 VSEIDHCEIYGADIDSAIPSTKLKWIQSCNLLMVSGSHTSPSGVNGHIRFWDVRSRNMVW 304
Query: 312 ETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYM-EDK 369
E E A+ D F+DV V + +FK+ SG++ ADLR+LG +DPWV + E+K
Sbjct: 305 EIKE------AQ--DCFSDVTVSDNLSAVFKVGVTSGEVFYADLRSLGTKDPWVCLGEEK 356
Query: 370 NPSMISSSGNNNGENKLIHCYKNQVFVG-RGGSLEVWSRVREGR--NRS---CSEGLFRR 423
++ G I Y N VF +G +E+WS V G N S E +FR+
Sbjct: 357 KRNL----NERRGVGSKIESYGNHVFCSSKGSGIELWSEVITGLVGNASRDVLEERVFRK 412
Query: 424 NFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWES 462
N + ++ DSG I+ + GGNR+FV+R+D + ++VW+S
Sbjct: 413 NSLGKLADSGENKITGLAFGGNRMFVTRKDQQSVQVWQS 451
|
|
| TAIR|locus:2126719 AT4G30940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 98/403 (24%), Positives = 166/403 (41%)
Query: 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYAL--SNRQSDEPNPIFIDRDPDVFSVXXX 71
+ DR+K NVGG++FETT +T+ + G DS AL N +P +FIDR+PD F+V
Sbjct: 4 SNDRIKFNVGGRIFETTATTLANAGRDSFFGALFDENWNLSQPGDLFIDRNPDCFAVLLD 63
Query: 72 XXXXXXXPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALP 131
+ ++ L EA++YG+ L++A P D + + R P
Sbjct: 64 LLRTGDL-NIPPNIPERLLHKEAMFYGLIDHLRTAKWGP----FDGNRLHLSRSVTGIAP 118
Query: 132 STFTA--SSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSD--VAAVGSD 187
TA + DG IAHG + V+DW L T+ + + + S V +
Sbjct: 119 GDGTAIRAGPDGGCCIAHGSVVHVFDWMLEEHPTINLDYQRVNDVGWIDSGNIVLSACER 178
Query: 188 YSSGIHFYDL-SSSRHVASAHWTDPSDPRIYRATVTAIADSPTT-VFSSLVCPHKENSVL 245
G L SSS + D ++ + A++ SP + +F+S E +
Sbjct: 179 LGRGDGGMGLFSSSSGELRYKFQVSHDNQVKSYSAGALSFSPDSKIFTSCKGRSNEYGIG 238
Query: 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305
+ D+ST + G S + KL W+ +L + + + Y+ + D R
Sbjct: 239 VWDQSTGKQVDFFYESPGWSLGD--ADKLQWLSGKNCLLVATLF--PRKDNCYISLLDFR 294
Query: 306 SGEVVWETNEPG---SGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDP 362
+VW ++ G R D+ A ++E + ++ D+ DLR G
Sbjct: 295 EKNMVWSWSDIGFLTMAEEKRVRDAIA-----MEESNSICVVNEFEDLGFIDLRMDGGGS 349
Query: 363 WVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVW 405
V ++ M S + KL ++ Q+F S+ V+
Sbjct: 350 SVRWSSRSRLMKSKMPDEPCYPKLA-LHEGQLFSSMNDSISVF 391
|
|
| TAIR|locus:2047540 AT2G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 92/401 (22%), Positives = 167/401 (41%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSD----EPNPIFIDRDPDVFSVXXX 71
DR+K NVGG+LFETT +T+ + G DS AL + + + E + +F+DR+ D F+V
Sbjct: 6 DRIKFNVGGRLFETTATTLANAGRDSFFGALFDDEWNLSPLEDSILFVDRNSDCFAVLLD 65
Query: 72 XXXXXXXPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALP 131
+ + ++ L EA +YG+ +++A P G + +V+ A
Sbjct: 66 LLRTGDL-NVPANIPERLLHREASFYGLLDHVRTAKWGP-FDGNRLRLSDSVKGIAPG-D 122
Query: 132 STFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNITSIRHVWSD--VAAVGSDYS 189
T + DG +AHG + V+DW L + + + + SD V +
Sbjct: 123 GTAIRAGPDGGCCVAHGSVVHVFDWMLEEHSPINLDYQRVNDVGWIDSDNIVLSACEKLG 182
Query: 190 SGIHFYDL-SSSRHVASAHWTDPSDPRIYRATVTAIADSPT-TVFSSLVCPHKENSVLLI 247
G L SSS + + ++ T A++ SP +F+S E + +
Sbjct: 183 RGDGGMGLFSSSSGDLRYKFQVCHENQVKSYTAGALSFSPDYEIFASCKGRSNEYGIGVW 242
Query: 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307
D+ T + + G S + KL W+ +L + + + Y+ + D R
Sbjct: 243 DQITGKQTDFFYESPGWSLGD--ADKLQWLNGKNCLLVATLF--PRKDNCYISLLDFRDK 298
Query: 308 EVVWETNEPGSGRSA---RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV 364
+VW ++ GS + R D+ A +++ + ++ D+ DLR G V
Sbjct: 299 NMVWSWSDIGSPMAIDEKRVRDAIA-----MEDSNSICVVNEFEDLGFIDLRMYGGS--V 351
Query: 365 YMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGGSLEVW 405
++ M S + KL ++ Q+F S+ V+
Sbjct: 352 RWSSRSKLMKSKMPDEPCYPKLA-LHEGQLFSSMNDSISVF 391
|
|
| UNIPROTKB|E9PK99 KCTD21 "BTB/POZ domain-containing protein KCTD21" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNR---QSDEPNPIFIDRDPDVF 66
D + LNVGGKL+ T+L+T+ S PDS+L A+ S + + D FIDRD VF
Sbjct: 3 DPITLNVGGKLYTTSLATLTSF-PDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVF 56
|
|
| UNIPROTKB|E9PMS5 KCTD21 "BTB/POZ domain-containing protein KCTD21" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNR---QSDEPNPIFIDRDPDVF 66
D + LNVGGKL+ T+L+T+ S PDS+L A+ S + + D FIDRD VF
Sbjct: 3 DPITLNVGGKLYTTSLATLTSF-PDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVF 56
|
|
| UNIPROTKB|F5H497 KCTD10 "BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00038, P = 0.00038
Identities = 43/142 (30%), Positives = 67/142 (47%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYAL-SNRQ---SDEPNPIFIDRDPDVFSVXXXXX 73
VKLNVGG L+ TT+ T+ D++L A+ S R +D I IDR F
Sbjct: 34 VKLNVGGALYYTTMQTLTK--QDTMLKAMFSGRMEVLTDSEGWILIDRCGKHFGTILNYL 91
Query: 74 XXXXXPSTASRFSKQELADEALYY---GIDSQLKSAMSPPPLQGI--DASIVSTV-RPAA 127
P SR +EL EA YY G+ + ++A+ P + + +++T +PA
Sbjct: 92 RDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQVPVITSSKEEQKLIATSNKPAV 151
Query: 128 DALPS------TFTASSDDGSL 143
L + ++T++SDD L
Sbjct: 152 KLLYNRSNNKYSYTSNSDDNML 173
|
|
| WB|WBGene00015112 B0281.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 43/163 (26%), Positives = 68/163 (41%)
Query: 14 NGDRVKLNVGGKLFETTLSTI--QSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVXXX 71
+G+ VKLNVGG +FET ST+ G +L+ + D+ N FIDR P F
Sbjct: 2 SGNTVKLNVGGTVFETLKSTLTKHDGFFKALIETDVPAEKDDSNCFFIDRSPKHFETVLN 61
Query: 72 XXXXXXXPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALP 131
S+ EL EA YY + S L PP + +R A+
Sbjct: 62 YMRSGDVVLPDSKKDMLELKKEAEYYLL-SNLAKLCQPPTDNFKTCTPEELMRVVANTDK 120
Query: 132 STFTASSDDGSLWIAHGGQISVYDW--NLSHS-VTVRTHLDNI 171
+ ++ + G++ Y W NL H + R +++++
Sbjct: 121 KVIMIN------YLTYNGELVFYPWGFNLVHFLIQNRDYVEDV 157
|
|
| UNIPROTKB|O16612 B0281.5 "Protein B0281.5, isoform a" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 43/163 (26%), Positives = 68/163 (41%)
Query: 14 NGDRVKLNVGGKLFETTLSTI--QSGGPDSLLYALSNRQSDEPNPIFIDRDPDVFSVXXX 71
+G+ VKLNVGG +FET ST+ G +L+ + D+ N FIDR P F
Sbjct: 2 SGNTVKLNVGGTVFETLKSTLTKHDGFFKALIETDVPAEKDDSNCFFIDRSPKHFETVLN 61
Query: 72 XXXXXXXPSTASRFSKQELADEALYYGIDSQLKSAMSPPPLQGIDASIVSTVRPAADALP 131
S+ EL EA YY + S L PP + +R A+
Sbjct: 62 YMRSGDVVLPDSKKDMLELKKEAEYYLL-SNLAKLCQPPTDNFKTCTPEELMRVVANTDK 120
Query: 132 STFTASSDDGSLWIAHGGQISVYDW--NLSHS-VTVRTHLDNI 171
+ ++ + G++ Y W NL H + R +++++
Sbjct: 121 KVIMIN------YLTYNGELVFYPWGFNLVHFLIQNRDYVEDV 157
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 472 462 0.00096 118 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 624 (66 KB)
Total size of DFA: 295 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.58u 0.17s 40.75t Elapsed: 00:00:02
Total cpu time: 40.58u 0.17s 40.75t Elapsed: 00:00:02
Start: Tue May 21 08:39:11 2013 End: Tue May 21 08:39:13 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S7R7 | Y3903_ARATH | No assigned EC number | 0.6157 | 0.9576 | 0.9826 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 472 | |||
| pfam02214 | 92 | pfam02214, K_tetra, K+ channel tetramerisation dom | 7e-16 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 2e-07 |
| >gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-16
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLR 74
V+LNVGGK FET+ ST+ + PD+LL L R D+ N F DR P F +L+ R
Sbjct: 1 VRLNVGGKRFETSKSTL-TRFPDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYR 59
Query: 75 SN-RLPSTASRFSKQELADEALYYGIDSQL 103
+ +L +E +YG+
Sbjct: 60 TGGKLHRPEEV-CLDSFLEELEFYGLGELA 88
|
The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 18 VKLNVGGKLFET---TLSTIQSGGPDSLLYAL---SNRQSDEPNPIFIDRDPDVFSVLLS 71
V L VGGK F L+ AL ++SD+ D P+ F LL+
Sbjct: 2 VTLVVGGKKFHAHKAVLAAH-----SPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLN 56
Query: 72 LLRSNRLPSTASRFSKQELADEALYYGIDS 101
L + +L + +EL + A Y I
Sbjct: 57 FLYTGKLDLPEE--NVEELLELADYLQIPG 84
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.96 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.95 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.95 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.94 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.93 | |
| PLN02153 | 341 | epithiospecifier protein | 99.93 | |
| PLN02153 | 341 | epithiospecifier protein | 99.93 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.92 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.91 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.91 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.9 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.88 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 99.74 | |
| KOG2716 | 230 | consensus Polymerase delta-interacting protein PDI | 99.64 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 99.54 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 99.45 | |
| KOG2715 | 210 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 99.39 | |
| KOG2723 | 221 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 99.35 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.33 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 99.27 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.26 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 98.99 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.89 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.87 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.65 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.61 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.54 | |
| KOG4350 | 620 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 98.5 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.43 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.14 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.12 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.07 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 97.98 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 97.96 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 97.82 | |
| KOG3840 | 438 | consensus Uncharaterized conserved protein, contai | 97.8 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 97.75 | |
| KOG2075 | 521 | consensus Topoisomerase TOP1-interacting protein B | 97.67 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 97.62 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.5 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.38 | |
| KOG4591 | 280 | consensus Uncharacterized conserved protein, conta | 97.18 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.11 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 96.98 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 96.92 | |
| KOG4682 | 488 | consensus Uncharacterized conserved protein, conta | 96.92 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.86 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 96.72 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.4 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.99 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.95 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 95.83 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 95.79 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.74 | |
| PLN02772 | 398 | guanylate kinase | 95.65 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.13 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 94.98 | |
| PTZ00421 | 493 | coronin; Provisional | 94.87 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 94.78 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.77 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 94.37 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 94.16 | |
| PTZ00420 | 568 | coronin; Provisional | 93.71 | |
| PLN02772 | 398 | guanylate kinase | 93.57 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 93.48 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 93.47 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.92 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 92.73 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 92.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 91.88 | |
| PTZ00421 | 493 | coronin; Provisional | 91.82 | |
| KOG3473 | 112 | consensus RNA polymerase II transcription elongati | 91.71 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 90.57 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 90.08 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 89.49 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 89.15 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 88.84 | |
| smart00512 | 104 | Skp1 Found in Skp1 protein family. Family of Skp1 | 88.76 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 88.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.13 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 86.65 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 86.58 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 86.32 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 85.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 85.61 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 85.52 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 84.84 | |
| KOG1724 | 162 | consensus SCF ubiquitin ligase, Skp1 component [Po | 84.16 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 83.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 83.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 83.43 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.37 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.14 | |
| PF03931 | 62 | Skp1_POZ: Skp1 family, tetramerisation domain; Int | 82.73 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 82.25 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 82.13 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 80.87 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 80.67 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 80.42 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 80.22 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 80.14 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 80.02 |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=533.31 Aligned_cols=350 Identities=17% Similarity=0.196 Sum_probs=301.4
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE-EcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.--||+|.|+++.|++||.+||++ |+||++||++. +..+.++. .+.||.+++.||+|+|||++.++. .|+|+|
T Consensus 35 ~lcDv~L~v~~~~~~aHR~VLAa~--S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~--~nVq~l 110 (571)
T KOG4441|consen 35 LLCDVTLLVGDREFPAHRVVLAAC--SPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISE--DNVQEL 110 (571)
T ss_pred CCceEEEEECCeeechHHHHHHhc--cHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEech--HhHHHH
Confidence 345999999999999999999999 88999999976 67778885 599999999999999999999987 899999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCCCc-----------------------------------------cc-eeeee---
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQGID-----------------------------------------AS-IVSTV--- 123 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~l~-----------------------------------------~~-~~~lL--- 123 (472)
+++|.+|||.+++++|+ |..||++.| .+ +..+|
T Consensus 111 l~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d 190 (571)
T KOG4441|consen 111 LEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSD 190 (571)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhcccc
Confidence 99999999999999999 777776422 00 00000
Q ss_pred --------------------------------------------------------------------------CccccC
Q 012060 124 --------------------------------------------------------------------------RPAADA 129 (472)
Q Consensus 124 --------------------------------------------------------------------------~~~~~~ 129 (472)
.|..++
T Consensus 191 ~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~ 270 (571)
T KOG4441|consen 191 DLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRP 270 (571)
T ss_pred CCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCc
Confidence 122222
Q ss_pred ccccceeecc---CCcEEEeeeCc---------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCC-
Q 012060 130 LPSTFTASSD---DGSLWIAHGGQ---------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS- 190 (472)
Q Consensus 130 ~~~a~r~~~~---~g~l~va~GG~---------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~- 190 (472)
..+.++++++ .+.|+ ++||. |++|| |.. ++|+.+|.++++ ++++|+|||+|| ++
T Consensus 271 ~~~~~~t~~r~~~~~~l~-~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~----~~~~~~lYv~GG--~~~ 343 (571)
T KOG4441|consen 271 VMQSPRTRPRRSVSGKLV-AVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV----AVLNGKLYVVGG--YDS 343 (571)
T ss_pred cccCCCcccCcCCCCeEE-EECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE----EEECCEEEEEcc--ccC
Confidence 2445556554 25677 56653 89999 998 999999998854 459999999999 77
Q ss_pred CceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCccc
Q 012060 191 GIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKN 268 (472)
Q Consensus 191 g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~ 268 (472)
|...++++|+|||.+++|+.+++|+++|+.++ +++++|+||| ||.++ ..+++||+|||.+++ |+.
T Consensus 344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~------------W~~ 410 (571)
T KOG4441|consen 344 GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK------------WTP 410 (571)
T ss_pred CCcccceEEEecCCCCceeccCCccCccccce-eEEECCEEEEEeccccccccccEEEecCCCCc------------ccc
Confidence 89999999999999999999999999999996 9999999999 99998 569999999999944 999
Q ss_pred ccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEE
Q 012060 269 MAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKI 343 (472)
Q Consensus 269 v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~v 343 (472)
++||..++.. ++|+||++||.++....+++||+|||++|+ |+..+| |.++|+++++ ++++++||+|
T Consensus 411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~--M~~~R~~~g~-----a~~~~~iYvv 481 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAP--MNTRRSGFGV-----AVLNGKIYVV 481 (571)
T ss_pred cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCC--cccccccceE-----EEECCEEEEE
Confidence 9999987763 999999999998887678999999999999 999999 6999999994 9999999999
Q ss_pred cccCCCcccccccccC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 344 CSKSGDIAMADLRNLG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 344 Gg~~g~~~~~dl~s~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
||+++... ++++| +|+|+.+++ |+.+| +.+++++++++||+++| ++||+|++.
T Consensus 482 GG~~~~~~---~~~VE~ydp~~~~W~~v~~----m~~~r-----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 482 GGFDGTSA---LSSVERYDPETNQWTMVAP----MTSPR-----SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CCccCCCc---cceEEEEcCCCCceeEccc----Ccccc-----ccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 99998433 67777 999999998 99999 59999999999999999 789999776
|
|
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=417.32 Aligned_cols=446 Identities=24% Similarity=0.317 Sum_probs=356.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.+.+.|+|||||++|+|+++||+...|+++|.+|++.. ..+.+.+||||||++|..||||||||.|+++ .....+
T Consensus 8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~-g~~~~~ 86 (465)
T KOG2714|consen 8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDAS-GVFPER 86 (465)
T ss_pred CCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCc-cCchhh
Confidence 46789999999999999999999965599999999754 4567789999999999999999999999984 446677
Q ss_pred HHHhhhhhcCcchHHhhhc-CCCCCCCCccceeeeeCccccCccccce-eeccCCcEEEeeeCceEEeecccCCCCCccc
Q 012060 89 ELADEALYYGIDSQLKSAM-SPPPLQGIDASIVSTVRPAADALPSTFT-ASSDDGSLWIAHGGQISVYDWNLSHSVTVRT 166 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~-l~~~l~~l~~~~~~lL~~~~~~~~~a~r-~~~~~g~l~va~GG~Ve~YDW~~~~m~~~R~ 166 (472)
.|.+||.||||.++++-.. .+++|++..+.+...+.+..++.+++++ +.|+ ..+++|||+.|.+|||.+....+.++
T Consensus 87 llhdEA~fYGl~~llrrl~~~~~~F~Gf~~~~s~~~~~~~~g~g~ai~~~~p~-~~l~~AHg~~va~~dw~l~~~~tv~~ 165 (465)
T KOG2714|consen 87 LLHDEAMFYGLTPLLRRLTLCEELFDGFDLSLSRSVTGNAPGSGSAIRSAGPD-VGLIVAHGIVVAYFDWSLEYRSTVNT 165 (465)
T ss_pred hhhhhhhhcCcHHHHHHhhcCcccccccccccchhhccCCCCCCccccccCCC-ceEEEecccEEEEEEEEEEeeccccc
Confidence 7788999999999998322 3677999888877777777777778877 4454 67888999999999999988888899
Q ss_pred cccccceeeeeCCeEEEEcCcCCCCceecce-eeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC--CCCc
Q 012060 167 HLDNITSIRHVWSDVAAVGSDYSSGIHFYDL-SSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP--HKEN 242 (472)
Q Consensus 167 ~~~~v~~v~~l~~~lYavGG~~~~g~~~l~s-ve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~--~~l~ 242 (472)
++..+.++..++..+.++|..+..|.+.... +-..-..+..|+....-.....++.++++.-+.+|. |-.+. ....
T Consensus 166 ~~q~V~s~~~id~~~~~ia~~~k~g~~~~~~~~~~s~~~~l~W~~q~~~~~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~ 245 (465)
T KOG2714|consen 166 GYQLVFSSPRIDSGIEAIAANSKVGLGDAGLLVAGSSSGSLLWKIQEEGSNTVKGVFSLAVSVDPLFFIGTQLVALSSVG 245 (465)
T ss_pred ChhhhhccccccchhheeeecccccccccccccceeecceeeEeeccCCCcceEEEEeecccccchhhhhhhhhhccccc
Confidence 9998989999999999988754333333221 222223347798876554333333345555556666 43332 2366
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe--eeeEEcCCCCCC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE--VVWETNEPGSGR 320 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~--~vW~~~~~~~~~ 320 (472)
.|.+|++.|.| +...++.++.|+..++.|++|+...+++.+++-+-...+..+.+..||+|..+ .+|+.++++.+.
T Consensus 246 ~Igvw~~~t~q--~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~~gt~~ 323 (465)
T KOG2714|consen 246 KIGVWHAVTQQ--AQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIAYGTSS 323 (465)
T ss_pred cccccchhhhc--eeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEecCCccc
Confidence 78888888843 34455557999999999999998888888888887776778899999999998 779999997666
Q ss_pred CCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 321 SARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 321 ~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
..+...-.+++++.+--.....+..+.+++++.|+++...++|++...++|.|...++| +..+||+..+....+++
T Consensus 324 ~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~~idv~~~~~~~~~~~~tr~rGm~s~~pg----~~~~~s~k~l~Le~~~~ 399 (465)
T KOG2714|consen 324 GEVRVIDQHPETVGVGPCLFQTFEVHGSPLGLIDVCSDGGHVRVWNSTRFRGMISTQPG----STPEASFKKLALEEGDE 399 (465)
T ss_pred cceEeeeccccccCCCCeEEEEEEecCCCcceeehhhhCCcceEEeecccccccccCCC----CCcccccceeeehhccc
Confidence 55555555677777755666677888888888899988899999999999999999985 68899999999999999
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCCCCcce
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSNLSGVV 469 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~~~~~ 469 (472)
..++|+..+. +...++--|+||++|+.++.+|+|+++++||||||++|+++++|+|||+++..|.+
T Consensus 400 ~~s~~~gNd~---~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~~~gs~ 465 (465)
T KOG2714|consen 400 FSSMSSGNDS---GPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLECEGSS 465 (465)
T ss_pred cceeeecccc---cccCCchhhhhhhhhhccccCCcEEEEecCCeeEEEEEeccCceeEEEecCCCCcC
Confidence 9999999855 23334443699999999999999999999999999999999999999999998853
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=452.88 Aligned_cols=350 Identities=10% Similarity=0.045 Sum_probs=275.7
Q ss_pred CCCCcEEEEEC-CeEEEEeHHHhhccCCCCccccccCCC--CC-CCCCEEE-cCChhhHHHHhhccccCcccCCCCCcch
Q 012060 13 QNGDRVKLNVG-GKLFETTLSTIQSGGPDSLLYALSNRQ--SD-EPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSK 87 (472)
Q Consensus 13 ~~~~~V~LnVG-G~~F~t~r~tLa~~~pssyf~amf~~~--~~-~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v 87 (472)
..--||+|.|+ |+.|++||.+||++ |+||++||++. +. .+++|.+ +.++++|+.||+|+|||+| ++ .|+
T Consensus 23 ~~l~DV~L~v~~~~~f~~Hr~vLaa~--S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~--~nv 96 (557)
T PHA02713 23 DILCDVIITIGDGEEIKAHKTILAAG--SKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI--SS--MNV 96 (557)
T ss_pred CCCCCEEEEeCCCCEEeehHHHHhhc--CHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC--CH--HHH
Confidence 34569999998 89999999999998 88999999976 33 3667754 8999999999999999984 44 799
Q ss_pred HHHHhhhhhcCcchHHhhhc--CCCCCCCCc-----------------------------------------cc-eeeee
Q 012060 88 QELADEALYYGIDSQLKSAM--SPPPLQGID-----------------------------------------AS-IVSTV 123 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~--l~~~l~~l~-----------------------------------------~~-~~~lL 123 (472)
++||.+|.+|||+.++++|+ |..+|++.| .+ +.++|
T Consensus 97 ~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL 176 (557)
T PHA02713 97 IDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDII 176 (557)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHh
Confidence 99999999999999999999 666555422 00 00011
Q ss_pred ------------------------Ccc------------------------------------ccCcc-cc---ceeecc
Q 012060 124 ------------------------RPA------------------------------------ADALP-ST---FTASSD 139 (472)
Q Consensus 124 ------------------------~~~------------------------------------~~~~~-~a---~r~~~~ 139 (472)
++. |+..+ .+ .++.|+
T Consensus 177 ~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r 256 (557)
T PHA02713 177 STNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPR 256 (557)
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCc
Confidence 000 00000 00 012233
Q ss_pred CCcEEEeeeC-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCC-CceecceeeeecCCC
Q 012060 140 DGSLWIAHGG-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS-GIHFYDLSSSRHVAS 205 (472)
Q Consensus 140 ~g~l~va~GG-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~-g~~~l~sve~ydp~t 205 (472)
...++ ++|| .+++|| |.. ++|+.+|..+++ ++++++||++|| .+ +...++++++|||.+
T Consensus 257 ~~~l~-~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~----a~l~~~IYviGG--~~~~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 257 QLCLV-CHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYAS----AIVDNEIIIAGG--YNFNNPSLNKVYKINIEN 329 (557)
T ss_pred ceEEE-EecCccccCCCCEEEEeCCCCeEEECCCCCccccceEE----EEECCEEEEEcC--CCCCCCccceEEEEECCC
Confidence 22333 4554 278999 988 999999998854 459999999999 44 345678999999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----e
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----P 278 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~ 278 (472)
++|..+++|+.+|+.++ +++++|+||| ||.++ ..+++||+|||.+ |.|+.++||..++. .
T Consensus 330 n~W~~~~~m~~~R~~~~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~------------~~W~~~~~mp~~r~~~~~~~ 396 (557)
T PHA02713 330 KIHVELPPMIKNRCRFS-LAVIDDTIYAIGGQNGTNVERTIECYTMGD------------DKWKMLPDMPIALSSYGMCV 396 (557)
T ss_pred CeEeeCCCCcchhhcee-EEEECCEEEEECCcCCCCCCceEEEEECCC------------CeEEECCCCCcccccccEEE
Confidence 99999999999999995 9999999999 98876 4589999999999 44999999988765 3
Q ss_pred cCCeEEEEEEeCCCc-----------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEE
Q 012060 279 ATGVVLGSAIAWGAF-----------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLF 341 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~-----------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy 341 (472)
++|+|||+||.++.. ..+++||+|||++|+ |+..+| |..+|.++++ ++++++||
T Consensus 397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~--m~~~r~~~~~-----~~~~~~IY 467 (557)
T PHA02713 397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPN--FWTGTIRPGV-----VSHKDDIY 467 (557)
T ss_pred ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCC--CCcccccCcE-----EEECCEEE
Confidence 899999999976421 125789999999999 999999 5888999985 88899999
Q ss_pred EEcccCCCcccccccccC-----C-CCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC----CeEEEeecc
Q 012060 342 KICSKSGDIAMADLRNLG-----E-DPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG----GSLEVWSRV 408 (472)
Q Consensus 342 ~vGg~~g~~~~~dl~s~e-----~-d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g----~~~~v~~~~ 408 (472)
++||.++.... .+++| + |+|+.+++ |+.+| ...++++++|+||+.|| .++|.|+..
T Consensus 468 v~GG~~~~~~~--~~~ve~Ydp~~~~~W~~~~~----m~~~r-----~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 468 VVCDIKDEKNV--KTCIFRYNTNTYNGWELITT----TESRL-----SALHTILHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEeCCCCCCcc--ceeEEEecCCCCCCeeEccc----cCccc-----ccceeEEECCEEEEEeeecceeehhhcCcc
Confidence 99998754322 23455 6 79999998 88888 58999999999999999 368888875
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=394.07 Aligned_cols=340 Identities=10% Similarity=0.078 Sum_probs=247.3
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE---EcCChhhHHHHhhccccCcccCCCCCcchHH
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF---IDRDPDVFSVLLSLLRSNRLPSTASRFSKQE 89 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf---iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~ 89 (472)
-.||++ +.|+.|++||.+||++ |+||++||+++ |+++ ++. ++.|+++|+.||+|+|||+|.++. .|+++
T Consensus 22 ~~~~~~-~~~~~~~~HR~VLAa~--S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~--~nV~~ 95 (480)
T PHA02790 22 FKTIIE-AIGGNIIVNSTILKKL--SPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS--HNVVN 95 (480)
T ss_pred hceEEE-EcCcEEeeehhhhhhc--CHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec--ccHHH
Confidence 446655 5567999999999999 88999999976 4433 453 389999999999999999999987 89999
Q ss_pred HHhhhhhcCcchHHhhhc--CCCCCCCCcc-----------------------------------c------eeeeeCc-
Q 012060 90 LADEALYYGIDSQLKSAM--SPPPLQGIDA-----------------------------------S------IVSTVRP- 125 (472)
Q Consensus 90 Ll~eA~~~ql~~l~~~c~--l~~~l~~l~~-----------------------------------~------~~~lL~~- 125 (472)
|+++|.+|||++++++|+ |..+|++.|. + +.++|..
T Consensus 96 ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd 175 (480)
T PHA02790 96 LLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESD 175 (480)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccc
Confidence 999999999999999999 7777775330 0 0011100
Q ss_pred ----ccc-------------------Ccccccee--ec--cC-CcE------------EEeeeCceE--Eee---cccCC
Q 012060 126 ----AAD-------------------ALPSTFTA--SS--DD-GSL------------WIAHGGQIS--VYD---WNLSH 160 (472)
Q Consensus 126 ----~~~-------------------~~~~a~r~--~~--~~-g~l------------~va~GG~Ve--~YD---W~~~~ 160 (472)
..+ .++.-++. +. .. ..+ +-..--.-+ .|. |.+ +
T Consensus 176 ~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~ 254 (480)
T PHA02790 176 ELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCDKQPRKSYKYPFIEYPM-N 254 (480)
T ss_pred cCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHHHHHHHHHHhhccccccccccccccccCC-c
Confidence 000 00000000 00 00 000 000000000 000 000 0
Q ss_pred CC--CccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecC
Q 012060 161 SV--TVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVC 237 (472)
Q Consensus 161 m~--~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~ 237 (472)
+. ....+++. ++.+++.||++|| .++...++++++|||.+++|..+++|+.+|..++ +++++++||| ||.+
T Consensus 255 ~~~~~~~~~~~~---~~~~~~~lyviGG--~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v~~~~~iYviGG~~ 328 (480)
T PHA02790 255 MDQIIDIFHMCT---STHVGEVVYLIGG--WMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GVPANNKLYVVGGLP 328 (480)
T ss_pred ccceeeccCCcc---eEEECCEEEEEcC--CCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EEEECCEEEEECCcC
Confidence 00 00112321 2358999999999 6666678899999999999999999999999985 8899999999 8865
Q ss_pred CCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE
Q 012060 238 PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 238 ~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~ 312 (472)
+ .++||+|||.+ |.|+.++||..++. .++|+|||+||.++. ..++|+|||++++ |+
T Consensus 329 ~--~~sve~ydp~~------------n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~--W~ 389 (480)
T PHA02790 329 N--PTSVERWFHGD------------AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQ--WQ 389 (480)
T ss_pred C--CCceEEEECCC------------CeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCE--EE
Confidence 3 37899999999 44999999987764 389999999997654 3689999999999 99
Q ss_pred EcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECC
Q 012060 313 TNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKN 392 (472)
Q Consensus 313 ~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g 392 (472)
..+| |..+|.++++ ++++++||++||... . =..++|+|+.+++ |+.+| .++++++++|
T Consensus 390 ~~~~--m~~~r~~~~~-----~~~~~~IYv~GG~~e---~---ydp~~~~W~~~~~----m~~~r-----~~~~~~v~~~ 447 (480)
T PHA02790 390 FGPS--TYYPHYKSCA-----LVFGRRLFLVGRNAE---F---YCESSNTWTLIDD----PIYPR-----DNPELIIVDN 447 (480)
T ss_pred eCCC--CCCccccceE-----EEECCEEEEECCceE---E---ecCCCCcEeEcCC----CCCCc-----cccEEEEECC
Confidence 9999 5889999884 788999999998431 1 1224899999998 88888 4889999999
Q ss_pred EEEEecC-------CeEEEeecc
Q 012060 393 QVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 393 ~l~~~~g-------~~~~v~~~~ 408 (472)
+||+.|| .++|+|++.
T Consensus 448 ~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 448 KLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEEECCcCCCcccceEEEEECC
Confidence 9999998 457777764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=364.56 Aligned_cols=350 Identities=10% Similarity=0.067 Sum_probs=257.4
Q ss_pred CCcEEEEE--CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 15 GDRVKLNV--GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 15 ~~~V~LnV--GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
--||+|.| +|+.|++||.+|+++ |+||++||++... +.+|.+ + ++++|+.||+|+|||++.++. .++++|+
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~--S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~~~ll 82 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSS--SEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNVKDIL 82 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhh--hHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHHHHHH
Confidence 45788877 999999999999998 8899999987533 566755 6 999999999999999999876 7899999
Q ss_pred hhhhhcCcchHHhhhc--CCCCCCCCc-----------------------------------------cc-eeeee----
Q 012060 92 DEALYYGIDSQLKSAM--SPPPLQGID-----------------------------------------AS-IVSTV---- 123 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~--l~~~l~~l~-----------------------------------------~~-~~~lL---- 123 (472)
.+|.+|||+.+++.|+ +...++..| .+ +..+|
T Consensus 83 ~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~ 162 (534)
T PHA03098 83 SIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDK 162 (534)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCC
Confidence 9999999999999998 444343211 00 00000
Q ss_pred -------------------Cc-------------------------------------------cccCccc-cc----ee
Q 012060 124 -------------------RP-------------------------------------------AADALPS-TF----TA 136 (472)
Q Consensus 124 -------------------~~-------------------------------------------~~~~~~~-a~----r~ 136 (472)
++ .|+.... +. ..
T Consensus 163 L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (534)
T PHA03098 163 LNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKI 242 (534)
T ss_pred cCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCC
Confidence 00 0000000 00 00
Q ss_pred ec----cCCcEEEeeeC-----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCC-ceecceeee
Q 012060 137 SS----DDGSLWIAHGG-----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSG-IHFYDLSSS 200 (472)
Q Consensus 137 ~~----~~g~l~va~GG-----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g-~~~l~sve~ 200 (472)
.+ ....+++++|+ .+.+|+ |.. +.++. +..++ ++++++.||++|| .++ ....+.+.+
T Consensus 243 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~lyv~GG--~~~~~~~~~~v~~ 315 (534)
T PHA03098 243 LPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCFG----SVVLNNVIYFIGG--MNKNNLSVNSVVS 315 (534)
T ss_pred CcCccCCCcceEeecccchhhceeeecchhhhhcccccCccc-cccce----EEEECCEEEEECC--CcCCCCeeccEEE
Confidence 01 11234433443 255677 444 33332 33343 3459999999999 443 335678999
Q ss_pred ecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-
Q 012060 201 RHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI- 277 (472)
Q Consensus 201 ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~- 277 (472)
|||.+++|..+++|+.+|..++ +++++++||+ ||.+. ..++++|+|||.+ +.|+.+++|..++.
T Consensus 316 yd~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~------------~~W~~~~~lp~~r~~ 382 (534)
T PHA03098 316 YDTKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYNSISLNTVESWKPGE------------SKWREEPPLIFPRYN 382 (534)
T ss_pred EeCCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCCCEecceEEEEcCCC------------CceeeCCCcCcCCcc
Confidence 9999999999999999999995 9999999999 98765 4589999999999 44999999887764
Q ss_pred ----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 278 ----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 278 ----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
..++.||+.||.......++++|+|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSP--LPISHYGGCA-----IYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCC--CCccccCceE-----EEECCEEEEECCccCCCCCc
Confidence 3899999999964332246799999999999 999998 5788999984 77899999999976432211
Q ss_pred cccccC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC-------eEEEeecc
Q 012060 354 DLRNLG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG-------SLEVWSRV 408 (472)
Q Consensus 354 dl~s~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~-------~~~v~~~~ 408 (472)
.+..++ +|+|+.+++ |+.+| .+..+++++|+||+.||. .||+|+..
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~----~~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSS----LNFPR-----INASLCIFNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ccceEEEecCCCCceeeCCC----CCccc-----ccceEEEECCEEEEEcCCcCCcccceeEEEeCC
Confidence 122233 899999997 77777 467888899999999983 57777654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=336.98 Aligned_cols=204 Identities=20% Similarity=0.202 Sum_probs=179.9
Q ss_pred cCCcEEEeee---C-----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC
Q 012060 139 DDGSLWIAHG---G-----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 139 ~~g~l~va~G---G-----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
.++.||+++| | .+++|| |+. ++|+++|..+++ ++++|.|||+|| ++|...++++|+|||.
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v----~~l~g~iYavGG--~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV----AVLDGKLYAVGG--FDGEKSLNSVECYDPV 404 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccccee----EEECCEEEEEec--cccccccccEEEecCC
Confidence 3578995555 1 199999 999 999999999965 459999999999 8899999999999999
Q ss_pred CCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-C-CCceeEEEeCCCcccccccccccCCCcccccccceeEEe---
Q 012060 205 SAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-H-KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP--- 278 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~-~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--- 278 (472)
+|+|+.+++|.++|++++ +++++|+||| ||.++ . ++++||+|||.| |.|+.++||+.+|..
T Consensus 405 ~~~W~~va~m~~~r~~~g-v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t------------~~W~~~~~M~~~R~~~g~ 471 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHG-VAVLGGKLYIIGGGDGSSNCLNSVECYDPET------------NTWTLIAPMNTRRSGFGV 471 (571)
T ss_pred CCcccccCCCCcceeeeE-EEEECCEEEEEcCcCCCccccceEEEEcCCC------------CceeecCCcccccccceE
Confidence 999999999999999995 9999999999 88776 4 699999999999 449999999999763
Q ss_pred --cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 279 --ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 279 --~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+++.|||+||+++.+ ...+||+|||++++ |+..++ |..+|..+++ ++++++||++||+++... |.
T Consensus 472 a~~~~~iYvvGG~~~~~-~~~~VE~ydp~~~~--W~~v~~--m~~~rs~~g~-----~~~~~~ly~vGG~~~~~~---l~ 538 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTS-ALSSVERYDPETNQ--WTMVAP--MTSPRSAVGV-----VVLGGKLYAVGGFDGNNN---LN 538 (571)
T ss_pred EEECCEEEEECCccCCC-ccceEEEEcCCCCc--eeEccc--CccccccccE-----EEECCEEEEEecccCccc---cc
Confidence 999999999999954 56789999999999 999998 5899999985 888999999999887644 77
Q ss_pred ccC-----CCCcEEeecCCCCcccCCC
Q 012060 357 NLG-----EDPWVYMEDKNPSMISSSG 378 (472)
Q Consensus 357 s~e-----~d~W~~~~~~~~~m~~~~~ 378 (472)
++| +|+|+...+ |...+.
T Consensus 539 ~ve~ydp~~d~W~~~~~----~~~~~~ 561 (571)
T KOG4441|consen 539 TVECYDPETDTWTEVTE----PESGRG 561 (571)
T ss_pred eeEEcCCCCCceeeCCC----cccccc
Confidence 777 999999998 666663
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=300.05 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=166.9
Q ss_pred cCCcEEEeeeC--------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC
Q 012060 139 DDGSLWIAHGG--------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 139 ~~g~l~va~GG--------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
.++.||+++|- .|++|| |.. ++|+.+|..++ +++++++|||+|| +++...++++|+|||.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~----~~~~~g~IYviGG--~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS----LAVIDDTIYAIGG--QNGTNVERTIECYTMG 375 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee----EEEECCEEEEECC--cCCCCCCceEEEEECC
Confidence 45788966551 189999 988 99999999985 4569999999999 7777778999999999
Q ss_pred CCccccCCCCcCcccceeEEEEeCCeEEE-EecCCC-------------------CCceeEEEeCCCcccccccccccCC
Q 012060 205 SAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPH-------------------KENSVLLIDKSTLQISSEIGRQSGA 264 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~-------------------~l~sVE~YDp~t~~~~~~~~~~~~~ 264 (472)
+++|..+++|+.+|+.++ +++++|+||+ ||.++. .+++||+|||.+ |
T Consensus 376 ~~~W~~~~~mp~~r~~~~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t------------d 442 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYG-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN------------N 442 (557)
T ss_pred CCeEEECCCCCccccccc-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC------------C
Confidence 999999999999999995 8999999999 886531 268999999999 4
Q ss_pred CcccccccceeEE-----ecCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCC
Q 012060 265 SSKNMAVGKLTWI-----PATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDEL 338 (472)
Q Consensus 265 ~W~~v~~m~~~~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~ 338 (472)
+|+.++||..+|. .++|+|||+||.++......+||+|||++ |+ |+..++ |..+|..+++ +++++
T Consensus 443 ~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~--m~~~r~~~~~-----~~~~~ 513 (557)
T PHA02713 443 IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITT--TESRLSALHT-----ILHDN 513 (557)
T ss_pred eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccc--cCccccccee-----EEECC
Confidence 4999999988765 38999999999765433445799999999 89 999999 5889999995 88899
Q ss_pred eEEEEcccCCCcccccccccC--CCCcEEeec
Q 012060 339 TLFKICSKSGDIAMADLRNLG--EDPWVYMED 368 (472)
Q Consensus 339 ~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~ 368 (472)
+||++||+++.. ....+. +|+|+.++|
T Consensus 514 ~iyv~Gg~~~~~---~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 514 TIMMLHCYESYM---LQDTFNVYTYEWNHICH 542 (557)
T ss_pred EEEEEeeeccee---ehhhcCcccccccchhh
Confidence 999999998731 122222 999999997
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=269.13 Aligned_cols=185 Identities=8% Similarity=0.029 Sum_probs=154.5
Q ss_pred cCCcEEEeeeC-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 139 DDGSLWIAHGG-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 139 ~~g~l~va~GG-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
.++.+|+++|. .+++|| |.. ++|+.+|..+++ ++++++||++|| .++ .+++|+|||.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~----v~~~~~iYviGG--~~~---~~sve~ydp~~ 340 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG----VPANNKLYVVGG--LPN---PTSVERWFHGD 340 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE----EEECCEEEEECC--cCC---CCceEEEECCC
Confidence 34678855441 289999 988 999999998854 459999999999 543 26799999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ec
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PA 279 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~ 279 (472)
++|..+++|+.+|..++ +++++|+||| ||.++. .+++|+|||.+ |.|+.++||..++. .+
T Consensus 341 n~W~~~~~l~~~r~~~~-~~~~~g~IYviGG~~~~-~~~ve~ydp~~------------~~W~~~~~m~~~r~~~~~~~~ 406 (480)
T PHA02790 341 AAWVNMPSLLKPRCNPA-VASINNVIYVIGGHSET-DTTTEYLLPNH------------DQWQFGPSTYYPHYKSCALVF 406 (480)
T ss_pred CeEEECCCCCCCCcccE-EEEECCEEEEecCcCCC-CccEEEEeCCC------------CEEEeCCCCCCccccceEEEE
Confidence 99999999999999985 9999999999 887543 58999999999 44999999988864 38
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+|+|||+|| .+|+|||++|+ |+..+| |..+|.++++ ++++++||++||.++... ++++|
T Consensus 407 ~~~IYv~GG---------~~e~ydp~~~~--W~~~~~--m~~~r~~~~~-----~v~~~~IYviGG~~~~~~---~~~ve 465 (480)
T PHA02790 407 GRRLFLVGR---------NAEFYCESSNT--WTLIDD--PIYPRDNPEL-----IIVDNKLLLIGGFYRGSY---IDTIE 465 (480)
T ss_pred CCEEEEECC---------ceEEecCCCCc--EeEcCC--CCCCccccEE-----EEECCEEEEECCcCCCcc---cceEE
Confidence 999999986 37999999999 999999 5889999984 888999999999875322 45666
Q ss_pred -----CCCcEEee
Q 012060 360 -----EDPWVYME 367 (472)
Q Consensus 360 -----~d~W~~~~ 367 (472)
+|+|+.+-
T Consensus 466 ~Yd~~~~~W~~~~ 478 (480)
T PHA02790 466 VYNNRTYSWNIWD 478 (480)
T ss_pred EEECCCCeEEecC
Confidence 99998764
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=243.30 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=162.7
Q ss_pred cCCcEEEeeeC---ceEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCcCCCC------ceecceeee
Q 012060 139 DDGSLWIAHGG---QISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSDYSSG------IHFYDLSSS 200 (472)
Q Consensus 139 ~~g~l~va~GG---~Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~~g------~~~l~sve~ 200 (472)
.++.|||++|- .+.+|| |.. ++|+ .+|.+++ +++++++|||+|| +.. ...++.+|+
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~----~~~~~~~iYv~GG--~~~~~~~~~~~~~~~v~~ 89 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV----AAAIDGKLYVFGG--IGKANSEGSPQVFDDVYR 89 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce----EEEECCEEEEEeC--CCCCCCCCcceecccEEE
Confidence 34788855442 267776 988 9998 5788874 4569999999999 432 235789999
Q ss_pred ecCCCCccccCC-CCcCcccceeEEEEeCCeEEE-EecCCC-----------------------------------CCce
Q 012060 201 RHVASAHWTDPS-DPRIYRATVTAIADSPTTVFS-SLVCPH-----------------------------------KENS 243 (472)
Q Consensus 201 ydp~t~~W~~~a-~m~~~R~~~~ava~l~g~IYA-Gg~~~~-----------------------------------~l~s 243 (472)
|||.+++|+.++ +|+..|.+++++++++++||| ||.++. .+++
T Consensus 90 Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T TIGR03547 90 YDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169 (346)
T ss_pred EECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce
Confidence 999999999997 456666665423378999999 886531 1489
Q ss_pred eEEEeCCCcccccccccccCCCcccccccce-eEE-----ecCCeEEEEEEeCCCccccceEEEEc--CCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKL-TWI-----PATGVVLGSAIAWGAFGYSGYVRMWD--PRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yD--p~~~~~vW~~~~ 315 (472)
||+|||.+ +.|+.+++|.. ++. .++++||++||..........+++|| |.+++ |+..+
T Consensus 170 v~~YDp~t------------~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~--W~~~~ 235 (346)
T TIGR03547 170 VLSYDPST------------NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLE--WNKLP 235 (346)
T ss_pred EEEEECCC------------CceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCce--eeecC
Confidence 99999999 44999999874 332 37999999999754321233566665 56778 99999
Q ss_pred CCCCCCCcc--cccccceeeeecCCeEEEEcccCCCc----------c----cccccccC-----CCCcEEeecCCCCcc
Q 012060 316 PGSGRSARF--GDSFADVDVDVDELTLFKICSKSGDI----------A----MADLRNLG-----EDPWVYMEDKNPSMI 374 (472)
Q Consensus 316 ~~~~~~~R~--~~~~~d~~v~~~~~~iy~vGg~~g~~----------~----~~dl~s~e-----~d~W~~~~~~~~~m~ 374 (472)
+| ..+|. ..+.+-..+++++++||++||.+... . ...+.++| +|+|+.+++ |+
T Consensus 236 ~m--~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~----lp 309 (346)
T TIGR03547 236 PL--PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK----LP 309 (346)
T ss_pred CC--CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC----CC
Confidence 96 33331 11111112477899999999975210 0 00123444 899999998 77
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecC
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
.+| ....+++++|+||+.+|
T Consensus 310 ~~~-----~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 310 QGL-----AYGVSVSWNNGVLLIGG 329 (346)
T ss_pred CCc-----eeeEEEEcCCEEEEEec
Confidence 777 36677889999999999
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=239.22 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=161.9
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc----ccCCCCcCcccceeEEEEeCCe
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW----TDPSDPRIYRATVTAIADSPTT 230 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W----~~~a~m~~~R~~~~ava~l~g~ 230 (472)
|.. ++|+.+|..++. +++++.||++|| .++...++.+++||+.+++| ..+++|+.+|..++ +++++++
T Consensus 53 W~~~~~lp~~r~~~~~----~~~~~~lyviGG--~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~-~~~~~~~ 125 (323)
T TIGR03548 53 WVKDGQLPYEAAYGAS----VSVENGIYYIGG--SNSSERFSSVYRITLDESKEELICETIGNLPFTFENGS-ACYKDGT 125 (323)
T ss_pred EEEcccCCccccceEE----EEECCEEEEEcC--CCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCce-EEEECCE
Confidence 888 899999987643 358999999999 66667789999999999998 78999999999885 8999999
Q ss_pred EEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccce-eE-----EecCCeEEEEEEeCCCccccceEEEE
Q 012060 231 VFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL-TW-----IPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 231 IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
||+ ||... ..++.+++|||.+ ++|+.+++|.. +| ..++++|||.||.++. ...++++|
T Consensus 126 iYv~GG~~~~~~~~~v~~yd~~~------------~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~y 191 (323)
T TIGR03548 126 LYVGGGNRNGKPSNKSYLFNLET------------QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKY 191 (323)
T ss_pred EEEEeCcCCCccCceEEEEcCCC------------CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEE
Confidence 999 87643 4589999999999 44999998753 33 2489999999997654 23578999
Q ss_pred cCCCCeeeeEEcCCCCC-CCCcc--cccccceeeeecCCeEEEEcccCCCcccc---c----------------------
Q 012060 303 DPRSGEVVWETNEPGSG-RSARF--GDSFADVDVDVDELTLFKICSKSGDIAMA---D---------------------- 354 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~-~~~R~--~~~~~d~~v~~~~~~iy~vGg~~g~~~~~---d---------------------- 354 (472)
||++++ |+..++|.. ..+|. +++. +++.+++||++||.++..... +
T Consensus 192 d~~~~~--W~~~~~~~~~~~p~~~~~~~~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T TIGR03548 192 SPKKNQ--WQKVADPTTDSEPISLLGAAS----IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE 265 (323)
T ss_pred ecCCCe--eEECCCCCCCCCceeccceeE----EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence 999999 999998631 23333 3332 456689999999987532100 0
Q ss_pred ----ccccC-----CCCcEEeecCCCCcc-cCCCCCCCcCeEEEEECCEEEEecC
Q 012060 355 ----LRNLG-----EDPWVYMEDKNPSMI-SSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 355 ----l~s~e-----~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
.++++ +|+|+.+++ |+ .+| ++..+++++++||+.+|
T Consensus 266 ~~~~~~~v~~yd~~~~~W~~~~~----~p~~~r-----~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 266 WYNWNRKILIYNVRTGKWKSIGN----SPFFAR-----CGAALLLTGNNIFSING 311 (323)
T ss_pred ccCcCceEEEEECCCCeeeEccc----cccccc-----CchheEEECCEEEEEec
Confidence 12344 899999997 54 466 57889999999999999
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=229.02 Aligned_cols=206 Identities=12% Similarity=0.055 Sum_probs=151.7
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecC--CCCccccCCCCc-CcccceeEEEEeCCeEEE-E
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHV--ASAHWTDPSDPR-IYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp--~t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-G 234 (472)
++||.+|...+ +++++++||++|| +.. +.+.+||+ .+++|..+++|+ .+|..++ ++++++.||+ |
T Consensus 2 ~~lp~~~~~~~----~~~~~~~vyv~GG--~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~~~~~~~iYv~G 70 (346)
T TIGR03547 2 PDLPVGFKNGT----GAIIGDKVYVGLG--SAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAV-AAAIDGKLYVFG 70 (346)
T ss_pred CCCCccccCce----EEEECCEEEEEcc--ccC----CeeEEEECCCCCCCceECCCCCCCCcccce-EEEECCEEEEEe
Confidence 56888888753 3468999999999 432 56788985 688999999998 5899985 9999999999 8
Q ss_pred ecCC-------CCCceeEEEeCCCcccccccccccCCCccccc-ccceeEE------ecCCeEEEEEEeCCCc-------
Q 012060 235 LVCP-------HKENSVLLIDKSTLQISSEIGRQSGASSKNMA-VGKLTWI------PATGVVLGSAIAWGAF------- 293 (472)
Q Consensus 235 g~~~-------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~m~~~~~------~~~g~Lyv~Gg~~g~~------- 293 (472)
|... ..++.+|+|||.+ |.|+.++ ++...+. .++++|||+||.++..
T Consensus 71 G~~~~~~~~~~~~~~~v~~Yd~~~------------~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 138 (346)
T TIGR03547 71 GIGKANSEGSPQVFDDVYRYDPKK------------NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFAD 138 (346)
T ss_pred CCCCCCCCCcceecccEEEEECCC------------CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhh
Confidence 8643 1378999999999 4499997 3444332 3699999999976421
Q ss_pred --------------------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 294 --------------------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 294 --------------------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
..+++||+|||.+++ |+..++| +..+|.++++ ++++++||++||.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~--W~~~~~~-p~~~r~~~~~-----~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQ--WRNLGEN-PFLGTAGSAI-----VHKGNKLLLINGEI 210 (346)
T ss_pred HhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCc--eeECccC-CCCcCCCceE-----EEECCEEEEEeeee
Confidence 013789999999999 9999995 2347888884 78899999999975
Q ss_pred CCccc-ccccc----cCCCCcEEeecCCCCcccCCCC--CCCcCeEEEEECCEEEEecC
Q 012060 348 GDIAM-ADLRN----LGEDPWVYMEDKNPSMISSSGN--NNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 348 g~~~~-~dl~s----~e~d~W~~~~~~~~~m~~~~~~--~~~~~~~~~~~~g~l~~~~g 399 (472)
..... .++.. .++++|+.+++ |+.+|.. ....++.+++++|+||+.+|
T Consensus 211 ~~~~~~~~~~~y~~~~~~~~W~~~~~----m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 211 KPGLRTAEVKQYLFTGGKLEWNKLPP----LPPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred CCCccchheEEEEecCCCceeeecCC----CCCCCCCccccccEEeeeEECCEEEEeec
Confidence 32111 11111 13679999998 6554410 00124447789999999998
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=241.76 Aligned_cols=204 Identities=9% Similarity=0.115 Sum_probs=163.3
Q ss_pred CCcEEEeeeC--------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 140 DGSLWIAHGG--------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 140 ~g~l~va~GG--------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
++.+|+.+|. .+.+|| |.. ++|+.+|..+++ +++++.||++|| .++...++++++|||.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~----~~~~~~lyv~GG--~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGV----TVFNNRIYVIGG--IYNSISLNTVESWKPGE 367 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceE----EEECCEEEEEeC--CCCCEecceEEEEcCCC
Confidence 4678855441 178899 988 999999998854 459999999999 66667789999999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI----- 277 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~----- 277 (472)
++|+.+++|+.+|..++ +++++++||+ ||... ..++++|+|||.++ .|+.+++|..++.
T Consensus 368 ~~W~~~~~lp~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~------------~W~~~~~~p~~r~~~~~~ 434 (534)
T PHA03098 368 SKWREEPPLIFPRYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTN------------KWSKGSPLPISHYGGCAI 434 (534)
T ss_pred CceeeCCCcCcCCccce-EEEECCEEEEECCcCCCCcccceEEEEeCCCC------------eeeecCCCCccccCceEE
Confidence 99999999999999985 8999999999 88543 34799999999993 3999999887654
Q ss_pred ecCCeEEEEEEeCCCcc--ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 PATGVVLGSAIAWGAFG--YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~--~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.+.... ..+.+++|||++++ |+..++ |..+|.++++ ++.+++||++||.++.....++
T Consensus 435 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~~~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 435 YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSS--LNFPRINASL-----CIFNNKIYVVGGDKYEYYINEI 505 (534)
T ss_pred EECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCC--CCcccccceE-----EEECCEEEEEcCCcCCccccee
Confidence 38999999998654321 24579999999999 999988 4778998885 7779999999998754322223
Q ss_pred cccC--CCCcEEeecCCC
Q 012060 356 RNLG--EDPWVYMEDKNP 371 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~ 371 (472)
..+. +|+|..+.+.++
T Consensus 506 ~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 506 EVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEEeCCCCEEEecCCCcc
Confidence 3332 999999987443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=221.44 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=165.8
Q ss_pred CCcEEEeeeC---------ceEEee-----ccc-CCCC-Ccccc-ccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 140 DGSLWIAHGG---------QISVYD-----WNL-SHSV-TVRTH-LDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 140 ~g~l~va~GG---------~Ve~YD-----W~~-~~m~-~~R~~-~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
++.||+++|. .+++|| |.. +++. .+|.. ++. ++++++++||++|| .++...++.+++||
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~--~~~~~~~~iyv~GG--~~~~~~~~~v~~yd 107 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV--RMVAVGTKLYIFGG--RDEKREFSDFYSYD 107 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce--EEEEECCEEEEECC--CCCCCccCcEEEEE
Confidence 4678865552 178899 987 6653 34431 111 34568999999999 66666788999999
Q ss_pred CCCCccccCCCC-----cCcccceeEEEEeCCeEEE-EecCC-C------CCceeEEEeCCCcccccccccccCCCcccc
Q 012060 203 VASAHWTDPSDP-----RIYRATVTAIADSPTTVFS-SLVCP-H------KENSVLLIDKSTLQISSEIGRQSGASSKNM 269 (472)
Q Consensus 203 p~t~~W~~~a~m-----~~~R~~~~ava~l~g~IYA-Gg~~~-~------~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v 269 (472)
|.+++|+.+++| +.+|+.++ +++.+++||+ ||.+. + .++.+++|||.+ +.|+.+
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~------------~~W~~l 174 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD------------GKWVQL 174 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCC------------CeEeeC
Confidence 999999999888 78899885 8899999999 88653 1 367899999999 449999
Q ss_pred cccc---eeE-----EecCCeEEEEEEeC------CCcc-ccceEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceee
Q 012060 270 AVGK---LTW-----IPATGVVLGSAIAW------GAFG-YSGYVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDV 333 (472)
Q Consensus 270 ~~m~---~~~-----~~~~g~Lyv~Gg~~------g~~~-~~~sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v 333 (472)
++|. .+| ..++++||++||.+ |... .++.|++|||.+++ |+.++++ .+..+|.++++
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~----- 247 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAH----- 247 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeee-----
Confidence 8764 222 34899999988753 2111 25689999999999 9998763 35678988884
Q ss_pred eecCCeEEEEcccCCC--------cc-ccccccc--CCCCcEEeecCC-CCcccCCCCCCCcCeEEEEEC-CEEEEecC
Q 012060 334 DVDELTLFKICSKSGD--------IA-MADLRNL--GEDPWVYMEDKN-PSMISSSGNNNGENKLIHCYK-NQVFVGRG 399 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~--------~~-~~dl~s~--e~d~W~~~~~~~-~~m~~~~~~~~~~~~~~~~~~-g~l~~~~g 399 (472)
++++++||++||.... .. ..|+-.+ ++++|+.+.... ++|+.++. ....+.+.+ ++||+.+|
T Consensus 248 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~----~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 248 AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT----AYTTATVYGKNGLLMHGG 322 (341)
T ss_pred EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc----cccccccCCcceEEEEcC
Confidence 7889999999996321 01 1122222 289999997422 24555553 233444444 48999988
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=217.10 Aligned_cols=210 Identities=10% Similarity=0.018 Sum_probs=156.5
Q ss_pred CCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc-Cccc---ceeEEEEeCCeEEE-Ee
Q 012060 161 SVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR-IYRA---TVTAIADSPTTVFS-SL 235 (472)
Q Consensus 161 m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~-~~R~---~~~ava~l~g~IYA-Gg 235 (472)
+|.+|..|++ +++++.||++||.........+.+++||+.+++|..+++|. .+|. +++ +++++++||+ ||
T Consensus 19 ~P~pR~~h~~----~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~GG 93 (341)
T PLN02153 19 GPGPRCSHGI----AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR-MVAVGTKLYIFGG 93 (341)
T ss_pred CCCCCCcceE----EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE-EEEECCEEEEECC
Confidence 7888998854 45899999999942122345678999999999999998774 4443 564 8899999999 88
Q ss_pred cCC-CCCceeEEEeCCCcccccccccccCCCccccccc-----ceeEE-----ecCCeEEEEEEeCCCc-----cccceE
Q 012060 236 VCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG-----KLTWI-----PATGVVLGSAIAWGAF-----GYSGYV 299 (472)
Q Consensus 236 ~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m-----~~~~~-----~~~g~Lyv~Gg~~g~~-----~~~~sv 299 (472)
.+. ..++.+++|||.+++ |+.+++| ..+|. ..+++||+.||.+... ..+++|
T Consensus 94 ~~~~~~~~~v~~yd~~t~~------------W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 94 RDEKREFSDFYSYDTVKNE------------WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCCCCccCcEEEEECCCCE------------EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 765 458899999999944 9998876 33332 3889999999975321 124689
Q ss_pred EEEcCCCCeeeeEEcCCCC-CCCCcccccccceeeeecCCeEEEEcccCCC------c--ccccccccC--CCCcEEeec
Q 012060 300 RMWDPRSGEVVWETNEPGS-GRSARFGDSFADVDVDVDELTLFKICSKSGD------I--AMADLRNLG--EDPWVYMED 368 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~-~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~------~--~~~dl~s~e--~d~W~~~~~ 368 (472)
++|||.+++ |+..++|. +..+|.++++ ++.+++||++||.+.. . ...++..++ +++|+.+++
T Consensus 162 ~~yd~~~~~--W~~l~~~~~~~~~r~~~~~-----~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 162 EAYNIADGK--WVQLPDPGENFEKRGGAGF-----AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred EEEECCCCe--EeeCCCCCCCCCCCCcceE-----EEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 999999999 99998852 2378999985 7789999999986421 0 011233333 899999975
Q ss_pred CCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 369 KNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 369 ~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
. ..|+.+| ....+++++++||+.+|-
T Consensus 235 ~-g~~P~~r-----~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 235 T-GAKPSAR-----SVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred c-CCCCCCc-----ceeeeEEECCEEEEECcc
Confidence 2 1245677 477889999999999993
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=223.94 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=160.6
Q ss_pred CCcEEEeeeC---ceEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCcCCCC------ceecceeeee
Q 012060 140 DGSLWIAHGG---QISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSDYSSG------IHFYDLSSSR 201 (472)
Q Consensus 140 ~g~l~va~GG---~Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~~g------~~~l~sve~y 201 (472)
++.||+++|. .+..|| |.. ++|+ .+|.+++ ++++++.||++|| +.. ...++.+++|
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~----~v~~~~~IYV~GG--~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAV----AAFIDGKLYVFGG--IGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccce----EEEECCEEEEEcC--CCCCCCCCceeEcccEEEE
Confidence 4788965553 267776 987 8887 4787774 4469999999999 443 1357889999
Q ss_pred cCCCCccccCCC-CcCcccceeEEEE-eCCeEEE-EecCCC-----------------------------------CCce
Q 012060 202 HVASAHWTDPSD-PRIYRATVTAIAD-SPTTVFS-SLVCPH-----------------------------------KENS 243 (472)
Q Consensus 202 dp~t~~W~~~a~-m~~~R~~~~ava~-l~g~IYA-Gg~~~~-----------------------------------~l~s 243 (472)
||.+++|..+++ ++..|.++. +++ .+++||+ ||.+.. .++.
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~-~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHV-AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE 190 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceE-EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce
Confidence 999999999986 345555554 444 8999999 886531 1478
Q ss_pred eEEEeCCCcccccccccccCCCcccccccce-eEE-----ecCCeEEEEEEeCCCcccc--ceEEEEcCCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKL-TWI-----PATGVVLGSAIAWGAFGYS--GYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~~~-----~~~g~Lyv~Gg~~g~~~~~--~sve~yDp~~~~~vW~~~~ 315 (472)
||+|||.+ |.|+.+++|.. ++. ..+++||++||...+.... ..+..|||++++ |+..+
T Consensus 191 v~~YD~~t------------~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~--W~~~~ 256 (376)
T PRK14131 191 VLSYDPST------------NQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK--WQKLP 256 (376)
T ss_pred EEEEECCC------------CeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcc--eeecC
Confidence 99999999 44999998875 332 3799999999864331111 234456899999 99999
Q ss_pred CCCCCCCcccc---cccceeeeecCCeEEEEcccCCCcc--------------cccccccC-----CCCcEEeecCCCCc
Q 012060 316 PGSGRSARFGD---SFADVDVDVDELTLFKICSKSGDIA--------------MADLRNLG-----EDPWVYMEDKNPSM 373 (472)
Q Consensus 316 ~~~~~~~R~~~---~~~d~~v~~~~~~iy~vGg~~g~~~--------------~~dl~s~e-----~d~W~~~~~~~~~m 373 (472)
+| ..+|.++ +.+-+.+++++++||++||.+.... ..++.++| +|+|+.+++ |
T Consensus 257 ~~--p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~----l 330 (376)
T PRK14131 257 DL--PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE----L 330 (376)
T ss_pred CC--CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc----C
Confidence 85 4554321 1111114678999999999653210 00112334 899999987 8
Q ss_pred ccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 374 ISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
+.+| .+..+++++|.||+.||
T Consensus 331 p~~r-----~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 331 PQGL-----AYGVSVSWNNGVLLIGG 351 (376)
T ss_pred CCCc-----cceEEEEeCCEEEEEcC
Confidence 8888 36678899999999999
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=213.91 Aligned_cols=181 Identities=9% Similarity=0.027 Sum_probs=142.5
Q ss_pred CCcEEEeeeCc--------eEEee-----c----cc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeee
Q 012060 140 DGSLWIAHGGQ--------ISVYD-----W----NL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSR 201 (472)
Q Consensus 140 ~g~l~va~GG~--------Ve~YD-----W----~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~y 201 (472)
++.||++ ||. +++|| | .. ++|+.+|..++ +++++++||++|| ......++.+++|
T Consensus 72 ~~~lyvi-GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~----~~~~~~~iYv~GG--~~~~~~~~~v~~y 144 (323)
T TIGR03548 72 ENGIYYI-GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGS----ACYKDGTLYVGGG--NRNGKPSNKSYLF 144 (323)
T ss_pred CCEEEEE-cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCce----EEEECCEEEEEeC--cCCCccCceEEEE
Confidence 3678854 542 88888 7 55 88999988874 4469999999999 4444568999999
Q ss_pred cCCCCccccCCCCc-CcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccc---eeE
Q 012060 202 HVASAHWTDPSDPR-IYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK---LTW 276 (472)
Q Consensus 202 dp~t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~---~~~ 276 (472)
||.+++|+.+++|+ .+|..+. +++++++||+ ||.++...+.+++|||+++ +|+.+++|. .++
T Consensus 145 d~~~~~W~~~~~~p~~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~------------~W~~~~~~~~~~~p~ 211 (323)
T TIGR03548 145 NLETQEWFELPDFPGEPRVQPV-CVKLQNELYVFGGGSNIAYTDGYKYSPKKN------------QWQKVADPTTDSEPI 211 (323)
T ss_pred cCCCCCeeECCCCCCCCCCcce-EEEECCEEEEEcCCCCccccceEEEecCCC------------eeEECCCCCCCCCce
Confidence 99999999999987 5888874 7899999999 8876644567899999993 499999873 221
Q ss_pred E--------ecCCeEEEEEEeCCCc-------------------------------cccceEEEEcCCCCeeeeEEcCCC
Q 012060 277 I--------PATGVVLGSAIAWGAF-------------------------------GYSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 277 ~--------~~~g~Lyv~Gg~~g~~-------------------------------~~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
. ..+++||+.||.++.. .+.++|++|||.+++ |+..++|
T Consensus 212 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~ 289 (323)
T TIGR03548 212 SLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK--WKSIGNS 289 (323)
T ss_pred eccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe--eeEcccc
Confidence 1 1479999999976421 023689999999999 9999874
Q ss_pred CCCCCcccccccceeeeecCCeEEEEcccCC
Q 012060 318 SGRSARFGDSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 318 ~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
+..+|.++++ ++++++||++||..-
T Consensus 290 -p~~~r~~~~~-----~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 290 -PFFARCGAAL-----LLTGNNIFSINGELK 314 (323)
T ss_pred -cccccCchhe-----EEECCEEEEEecccc
Confidence 3468999985 788999999999653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=217.91 Aligned_cols=213 Identities=12% Similarity=0.090 Sum_probs=161.8
Q ss_pred ccc-CC---CCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc---C-cccceeEEEEe
Q 012060 156 WNL-SH---SVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR---I-YRATVTAIADS 227 (472)
Q Consensus 156 W~~-~~---m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~---~-~R~~~~ava~l 227 (472)
|.. ++ +|.+|..|++ +++++.||++||.........+.+++||+.+++|+.++++. . .|.+++ ++++
T Consensus 153 W~~~~~~~~~P~pR~~h~~----~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~-~v~~ 227 (470)
T PLN02193 153 WIKVEQKGEGPGLRCSHGI----AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVR-MVSI 227 (470)
T ss_pred EEEcccCCCCCCCccccEE----EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceE-EEEE
Confidence 876 44 6788999854 45899999999942122234567999999999999876542 2 245664 8899
Q ss_pred CCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCccccccc---ceeEE-----ecCCeEEEEEEeCCCccccc
Q 012060 228 PTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG---KLTWI-----PATGVVLGSAIAWGAFGYSG 297 (472)
Q Consensus 228 ~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m---~~~~~-----~~~g~Lyv~Gg~~g~~~~~~ 297 (472)
+++||+ ||.++ ..++.+++|||.+++ |+.+++| ..+|. ..+++||+.||.++.. .++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~------------W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~ 294 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE------------WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLK 294 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE------------EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-Ccc
Confidence 999999 88776 458999999999944 9999887 34443 3789999999987653 567
Q ss_pred eEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC--CCCcEEeecCCCCcc
Q 012060 298 YVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG--EDPWVYMEDKNPSMI 374 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~ 374 (472)
++++|||.+++ |+..++ ..+..+|.++++ ++++++||++||.++.. ..|+..+. +++|+.++++. .++
T Consensus 295 ~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~-----~~~~gkiyviGG~~g~~-~~dv~~yD~~t~~W~~~~~~g-~~P 365 (470)
T PLN02193 295 TLDSYNIVDKK--WFHCSTPGDSFSIRGGAGL-----EVVQGKVWVVYGFNGCE-VDDVHYYDPVQDKWTQVETFG-VRP 365 (470)
T ss_pred eEEEEECCCCE--EEeCCCCCCCCCCCCCcEE-----EEECCcEEEEECCCCCc-cCceEEEECCCCEEEEeccCC-CCC
Confidence 99999999999 998875 335678999985 77799999999987642 23444333 89999998631 124
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
.+| ....+++++++||+.+|-
T Consensus 366 ~~R-----~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 366 SER-----SVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCc-----ceeEEEEECCEEEEECCc
Confidence 667 467788999999999993
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=216.59 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=164.9
Q ss_pred CCcEEEeeeC---------ceEEee-----ccc-CCC---CCc-cccccccceeeeeCCeEEEEcCcCCCCceecceeee
Q 012060 140 DGSLWIAHGG---------QISVYD-----WNL-SHS---VTV-RTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSS 200 (472)
Q Consensus 140 ~g~l~va~GG---------~Ve~YD-----W~~-~~m---~~~-R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ 200 (472)
.+.||+.+|- .+++|| |.. +.+ |.. |..+ +++++++.||++|| +++...++.+++
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~----~~v~~~~~lYvfGG--~~~~~~~ndv~~ 248 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGV----RMVSIGSTLYVFGG--RDASRQYNGFYS 248 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccce----EEEEECCEEEEECC--CCCCCCCccEEE
Confidence 4678855441 178899 987 443 222 3344 34569999999999 666677899999
Q ss_pred ecCCCCccccCCCC---cCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccc---c
Q 012060 201 RHVASAHWTDPSDP---RIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAV---G 272 (472)
Q Consensus 201 ydp~t~~W~~~a~m---~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~---m 272 (472)
|||.+++|+.+++| +.+|+.++ +++.+++||+ ||.+. ..++.+++|||.+++ |+.+++ +
T Consensus 249 yD~~t~~W~~l~~~~~~P~~R~~h~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~------------W~~~~~~~~~ 315 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTPRSFHS-MAADEENVYVFGGVSATARLKTLDSYNIVDKK------------WFHCSTPGDS 315 (470)
T ss_pred EECCCCEEEEcCcCCCCCCCccceE-EEEECCEEEEECCCCCCCCcceEEEEECCCCE------------EEeCCCCCCC
Confidence 99999999999998 78999985 8889999999 88766 458999999999944 998865 2
Q ss_pred ceeE-----EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceeeeecCCeEEEEccc
Q 012060 273 KLTW-----IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 273 ~~~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
...| ..++++||+.||.++. ..+.+++|||.+++ |+..+++ .+..+|.++++ ++++++||++||.
T Consensus 316 ~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~-----~~~~~~iyv~GG~ 386 (470)
T PLN02193 316 FSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDK--WTQVETFGVRPSERSVFAS-----AAVGKHIVIFGGE 386 (470)
T ss_pred CCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCE--EEEeccCCCCCCCcceeEE-----EEECCEEEEECCc
Confidence 2222 2378999999998765 36799999999999 9999874 34678999984 7889999999997
Q ss_pred CCCc---------ccccccccC--CCCcEEeecCCC--CcccCCCCCCCcCe-EEEEEC-CEEEEecC
Q 012060 347 SGDI---------AMADLRNLG--EDPWVYMEDKNP--SMISSSGNNNGENK-LIHCYK-NQVFVGRG 399 (472)
Q Consensus 347 ~g~~---------~~~dl~s~e--~d~W~~~~~~~~--~m~~~~~~~~~~~~-~~~~~~-g~l~~~~g 399 (472)
+... ...|+-.+. +++|+.+..+.. ..+.+|.. +.. ...+.+ +.||+.||
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~---~~~~~~~~~~~~~~~~fGG 451 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGW---TASTTGTIDGKKGLVMHGG 451 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcc---ccceeeEEcCCceEEEEcC
Confidence 5310 111333333 899999986431 12255531 111 222333 34888888
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=203.84 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=150.4
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCc-CcccceeEEEEeCCeE
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPR-IYRATVTAIADSPTTV 231 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~-~~R~~~~ava~l~g~I 231 (472)
+.. ++||.+|.... ++++++.||+.|| ..+ +.+..||+. +++|..+++|+ .+|..++ ++++++.|
T Consensus 19 ~~~l~~lP~~~~~~~----~~~~~~~iyv~gG--~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~-~v~~~~~I 87 (376)
T PRK14131 19 AEQLPDLPVPFKNGT----GAIDNNTVYVGLG--SAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAV-AAFIDGKL 87 (376)
T ss_pred cccCCCCCcCccCCe----EEEECCEEEEEeC--CCC----CeEEEEECCCCCCCeEECCcCCCCCcccce-EEEECCEE
Confidence 445 88998888763 3458999999999 433 346788875 57899999997 5898885 89999999
Q ss_pred EE-EecCC-------CCCceeEEEeCCCcccccccccccCCCccccccc-ceeE-----Ee-cCCeEEEEEEeCCCc---
Q 012060 232 FS-SLVCP-------HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG-KLTW-----IP-ATGVVLGSAIAWGAF--- 293 (472)
Q Consensus 232 YA-Gg~~~-------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m-~~~~-----~~-~~g~Lyv~Gg~~g~~--- 293 (472)
|+ ||... ..++.+++|||.+++ |+.++++ ...+ .. .+++|||.||.+...
T Consensus 88 YV~GG~~~~~~~~~~~~~~~v~~YD~~~n~------------W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 88 YVFGGIGKTNSEGSPQVFDDVYKYDPKTNS------------WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDG 155 (376)
T ss_pred EEEcCCCCCCCCCceeEcccEEEEeCCCCE------------EEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHH
Confidence 99 88653 136899999999944 9999853 3332 12 699999999965310
Q ss_pred ------------------------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEE
Q 012060 294 ------------------------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKI 343 (472)
Q Consensus 294 ------------------------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~v 343 (472)
..++.|++|||.+++ |+..++| ...+|.++++ ++.+++||++
T Consensus 156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~--W~~~~~~-p~~~~~~~a~-----v~~~~~iYv~ 227 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ--WKNAGES-PFLGTAGSAV-----VIKGNKLWLI 227 (376)
T ss_pred HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe--eeECCcC-CCCCCCcceE-----EEECCEEEEE
Confidence 014689999999999 9999985 2347888885 7779999999
Q ss_pred cccCCCc-cccccc----ccCCCCcEEeecCCCCcccCCCCCC---CcCeEEEEECCEEEEecC
Q 012060 344 CSKSGDI-AMADLR----NLGEDPWVYMEDKNPSMISSSGNNN---GENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 344 Gg~~g~~-~~~dl~----s~e~d~W~~~~~~~~~m~~~~~~~~---~~~~~~~~~~g~l~~~~g 399 (472)
||..... ...++. ..++++|..+++ |+.+|.+.- ......++++|+||+.||
T Consensus 228 GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 228 NGEIKPGLRTDAVKQGKFTGNNLKWQKLPD----LPPAPGGSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred eeeECCCcCChhheEEEecCCCcceeecCC----CCCCCcCCcCCccceEeceeECCEEEEeec
Confidence 9964321 111111 123789999998 655552110 012335789999999998
|
|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-18 Score=143.74 Aligned_cols=87 Identities=43% Similarity=0.754 Sum_probs=73.6
Q ss_pred EEEEECCeEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEEcCChhhHHHHhhcccc-CcccCCCCCcchHHHH
Q 012060 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFIDRDPDVFSVLLSLLRS-NRLPSTASRFSKQELA 91 (472)
Q Consensus 18 V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfiDrdp~~F~~IL~flrt-g~l~~~~~~~~v~~Ll 91 (472)
|+|||||++|.|.++||.+ .|+++|.+|+... .+.++++||||||.+|++||+|+|+ ++++.+ .......|+
T Consensus 1 V~lNVGG~~f~~~~~tL~~-~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~-~~~~~~~l~ 78 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTR-YPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIP-DEICLEELL 78 (94)
T ss_dssp EEEEETTEEEEEEHHHHHT-STTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB----TTS-HHHHH
T ss_pred CEEEECCEEEEEcHHHHhh-CCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCC-CchhHHHHH
Confidence 7899999999999999999 7999999999852 4678899999999999999999999 777754 457899999
Q ss_pred hhhhhcCcchH-Hhhh
Q 012060 92 DEALYYGIDSQ-LKSA 106 (472)
Q Consensus 92 ~eA~~~ql~~l-~~~c 106 (472)
+||+||+|.++ ++.|
T Consensus 79 ~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 79 EEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHT-HHHHBHHC
T ss_pred HHHHHcCCCccccCCC
Confidence 99999999999 7777
|
They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C .... |
| >KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-16 Score=151.55 Aligned_cols=92 Identities=33% Similarity=0.515 Sum_probs=83.8
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQE 89 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~ 89 (472)
.++.|+|||||+.|.|+++||++. +.+|++|+..+ .+..+.|||||+|.+|+.||||+|.|.+.++....++++
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk~--dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~E 80 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTKF--DGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKE 80 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhhh--hhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHH
Confidence 467899999999999999999996 89999999865 356678999999999999999999999998776678889
Q ss_pred HHhhhhhcCcchHHhhhc
Q 012060 90 LADEALYYGIDSQLKSAM 107 (472)
Q Consensus 90 Ll~eA~~~ql~~l~~~c~ 107 (472)
|++||.||.|+.|++.|.
T Consensus 81 l~~EA~fYlL~~Lv~~C~ 98 (230)
T KOG2716|consen 81 LLREAEFYLLDGLVELCQ 98 (230)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 999999999999999998
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=133.41 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=153.0
Q ss_pred CCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcccceeEEEEeCCeEEE-EecC
Q 012060 162 VTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYRATVTAIADSPTTVFS-SLVC 237 (472)
Q Consensus 162 ~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-Gg~~ 237 (472)
|..|++|.+ +..++++|+-||+ .+....+|...+|||.+++|.... -.+-.|.+++ +|++++.+|+ ||+.
T Consensus 76 PyqRYGHtv----V~y~d~~yvWGGR-ND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs-AcV~gn~MyiFGGye 149 (392)
T KOG4693|consen 76 PYQRYGHTV----VEYQDKAYVWGGR-NDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHS-ACVWGNQMYIFGGYE 149 (392)
T ss_pred chhhcCceE----EEEcceEEEEcCc-cCcccccceeeeeccccccccccceeeecCCccCCce-eeEECcEEEEecChH
Confidence 345777744 4599999999995 234568899999999999998753 3667799997 9999999999 8765
Q ss_pred C--CC-CceeEEEeCCCcccccccccccCCCcccccccce--eE------EecCCeEEEEEEeCCCcc--------ccce
Q 012060 238 P--HK-ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL--TW------IPATGVVLGSAIAWGAFG--------YSGY 298 (472)
Q Consensus 238 ~--~~-l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~--~~------~~~~g~Lyv~Gg~~g~~~--------~~~s 298 (472)
. .+ .+.+-++|..|.+ |..+-.-.. .| ..+++.+|+.||.+..++ +...
T Consensus 150 ~~a~~FS~d~h~ld~~Tmt------------Wr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~ 217 (392)
T KOG4693|consen 150 EDAQRFSQDTHVLDFATMT------------WREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDT 217 (392)
T ss_pred HHHHhhhccceeEecccee------------eeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcce
Confidence 4 33 6778888888844 887644111 12 137899999998644333 4568
Q ss_pred EEEEcCCCCeeeeEEcCCCCC-CCCcccccccceeeeecCCeEEEEcccCCCcc--cccccccC--CCCcEEeecCCCCc
Q 012060 299 VRMWDPRSGEVVWETNEPGSG-RSARFGDSFADVDVDVDELTLFKICSKSGDIA--MADLRNLG--EDPWVYMEDKNPSM 373 (472)
Q Consensus 299 ve~yDp~~~~~vW~~~~~~~~-~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~--~~dl~s~e--~d~W~~~~~~~~~m 373 (472)
|..+|.+|+. |.-..+..| ..-|.-|++ =+.|+.||+.||+.|.+. +.||=+.. +-.|..|+++-+.-
T Consensus 218 i~~ld~~T~a--W~r~p~~~~~P~GRRSHS~-----fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P 290 (392)
T KOG4693|consen 218 IMALDLATGA--WTRTPENTMKPGGRRSHST-----FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYP 290 (392)
T ss_pred eEEEeccccc--cccCCCCCcCCCcccccce-----EEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCC
Confidence 9999999999 998876433 344555764 788999999999997654 33666665 77799999865532
Q ss_pred ccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 374 ISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
.+| ..-..++.++++|..+|-
T Consensus 291 -~aR-----RRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 291 -SAR-----RRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred -Ccc-----cceeEEEECCEEEEecCC
Confidence 333 245667899999999993
|
|
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-15 Score=139.74 Aligned_cols=95 Identities=33% Similarity=0.496 Sum_probs=87.1
Q ss_pred CCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 12 RQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 12 ~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
+..+..|+||+||++|.|++.||.-..|+|+|.+||... +++++.|||||+|..|+.||+|+|.|.++.. ++.+
T Consensus 5 ~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~-s~i~ 83 (302)
T KOG1665|consen 5 SNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSL-SDID 83 (302)
T ss_pred cChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeec-CCcc
Confidence 456789999999999999999999999999999999853 5788899999999999999999999999975 5688
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+..+|+||+||||-++++...
T Consensus 84 ~lgvLeeArff~i~sL~~hle 104 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLE 104 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHh
Confidence 999999999999999998886
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=138.20 Aligned_cols=210 Identities=14% Similarity=0.145 Sum_probs=161.2
Q ss_pred CCCccccccccceeeeeCCeEEEEcCcCCCCceecce--eeeecCCCCccccCC---CCcCcccceeEEEEeCCeEEE-E
Q 012060 161 SVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDL--SSSRHVASAHWTDPS---DPRIYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 161 m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~s--ve~ydp~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-G 234 (472)
.+.+|..|.++ .+++++|+.|| ......+.. +..+|..+..|...+ .-+.+|.++. +++++++||. |
T Consensus 57 ~p~~R~~hs~~----~~~~~~~vfGG--~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-~~~~~~~l~lfG 129 (482)
T KOG0379|consen 57 GPIPRAGHSAV----LIGNKLYVFGG--YGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHS-LSAVGDKLYLFG 129 (482)
T ss_pred Ccchhhcccee----EECCEEEEECC--CCCCCccccceeEEeecCCcccccccccCCCCCccccee-EEEECCeEEEEc
Confidence 56678888543 47999999999 444344444 888999999998854 3446899985 9999999999 9
Q ss_pred ecCC--CCCceeEEEeCCCcccccccccccCCCcccccccce---eE-----EecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 235 LVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL---TW-----IPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 235 g~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~---~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
|.+. ..++.+-.||+.| +.|+...+... .| ...+.+||+.||.+.....++++..||+
T Consensus 130 G~~~~~~~~~~l~~~d~~t------------~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~ 197 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLST------------RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDL 197 (482)
T ss_pred cccCCCCChhheEeccCCC------------CcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecc
Confidence 8884 3489999999999 33888776333 12 2378999999998776546889999999
Q ss_pred CCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccC-CCcccccccccC--CCCcEEeecCCCCcccCCCCC
Q 012060 305 RSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKS-GDIAMADLRNLG--EDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 305 ~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~-g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~ 380 (472)
++.+ |+...- +....+|.+|++ ++.++++|++||.+ ++....|+-.+. +-+|..+.. ..-++.+|
T Consensus 198 ~~~~--W~~~~~~g~~P~pR~gH~~-----~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~-~g~~p~~R--- 266 (482)
T KOG0379|consen 198 ETST--WSELDTQGEAPSPRYGHAM-----VVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPT-GGDLPSPR--- 266 (482)
T ss_pred cccc--ceecccCCCCCCCCCCceE-----EEECCeEEEEeccccCCceecceEeeecccceeeeccc-cCCCCCCc---
Confidence 9999 998866 444689999996 78899999999987 665655666666 667774443 23356788
Q ss_pred CCcCeEEEEECCEEEEecCCeE
Q 012060 381 NGENKLIHCYKNQVFVGRGGSL 402 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~~g~~~ 402 (472)
.+....+.+.++|+.+|+..
T Consensus 267 --~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 267 --SGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred --ceeeeEEECCEEEEEcCCcc
Confidence 47777899999999999766
|
|
| >KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-14 Score=126.08 Aligned_cols=91 Identities=36% Similarity=0.550 Sum_probs=80.5
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcch
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSK 87 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v 87 (472)
.+..|+|||||+.|.|+|+||.+ .|.+++..+.... .++.+.|||||||..|..||||+|.|+|-+.+ ...
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~r-dp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~e 95 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPR-DPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSE 95 (210)
T ss_pred ceEEEEEecCCEEEEeeeecccc-CcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhh
Confidence 45789999999999999999999 7888999987653 46788999999999999999999999999865 677
Q ss_pred HHHHhhhhhcCcchHHhhhc
Q 012060 88 QELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+-.|+||+||.+.++++...
T Consensus 96 eGvL~EAefyn~~~li~lik 115 (210)
T KOG2715|consen 96 EGVLEEAEFYNDPSLIQLIK 115 (210)
T ss_pred hccchhhhccCChHHHHHHH
Confidence 78999999999999877654
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-13 Score=107.64 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=76.5
Q ss_pred cEEEEECCeEEEEeHHHhhccCCCCccccccCCCC--CCCCCEE-EcCChhhHHHHhhccccCcccCCCCCcchHHHHhh
Q 012060 17 RVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS--DEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADE 93 (472)
Q Consensus 17 ~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~--~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~e 93 (472)
||+|+|||+.|.+||.+|++. |+||++||+... .....+. .|.++..|+.+|+|+|++++.++. .++..++.+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~--s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAAC--SPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLEL 76 (90)
T ss_pred CeEEEECCEEEehHHHHHhhc--CHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHH
Confidence 588999999999999999997 889999998642 2455664 489999999999999999999865 689999999
Q ss_pred hhhcCcchHHhhhc
Q 012060 94 ALYYGIDSQLKSAM 107 (472)
Q Consensus 94 A~~~ql~~l~~~c~ 107 (472)
|.+|+++++.+.|+
T Consensus 77 a~~~~~~~l~~~c~ 90 (90)
T smart00225 77 ADYLQIPGLVELCE 90 (90)
T ss_pred HHHHCcHHHHhhhC
Confidence 99999999999884
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-13 Score=126.61 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=86.8
Q ss_pred CCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcch
Q 012060 12 RQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSK 87 (472)
Q Consensus 12 ~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v 87 (472)
+..++.|.|||||+.|.|.+.||.+ +|++++.+||+.. .+..+.+|||||..+|++||+|+||..+.++....++
T Consensus 5 ~~~~~~v~lnvGG~~ytt~l~tL~~-~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 5 SEYPDVVELNVGGAIYTTRLGTLTK-FPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEV 83 (221)
T ss_pred cccCCceeeccCCeEEEeeccceee-chHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhH
Confidence 3577899999999999999999999 9999999999854 4677899999999999999999999777777666789
Q ss_pred HHHHhhhhhcCcchHHhhhcCCCCCC
Q 012060 88 QELADEALYYGIDSQLKSAMSPPPLQ 113 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~l~~~l~ 113 (472)
..|.+||+||||......+....+.+
T Consensus 84 ~~L~rEA~f~~l~~~~~~l~~~~~~~ 109 (221)
T KOG2723|consen 84 ERLVREAEFFQLEAPVTYLLNSGQID 109 (221)
T ss_pred HHHHHHHHHHccccHHHHHhcccccc
Confidence 99999999999997776665233333
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=129.75 Aligned_cols=205 Identities=19% Similarity=0.164 Sum_probs=150.8
Q ss_pred CcEEEeeeC-------c--eEEee-----ccc----CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 141 GSLWIAHGG-------Q--ISVYD-----WNL----SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 141 g~l~va~GG-------~--Ve~YD-----W~~----~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
..+||.+|. . +..|| |.. ...+.+|..+ .++.++.+||++||.. .....++.+..||
T Consensus 71 ~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~----~~~~~~~~l~lfGG~~-~~~~~~~~l~~~d 145 (482)
T KOG0379|consen 71 NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGH----SLSAVGDKLYLFGGTD-KKYRNLNELHSLD 145 (482)
T ss_pred CEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccce----eEEEECCeEEEEcccc-CCCCChhheEecc
Confidence 567755442 1 67777 765 2445677777 4556899999999952 2355688999999
Q ss_pred CCCCccccCC---CCcCcccceeEEEEeCCeEEE-EecCC-C-CCceeEEEeCCCcccccccccccCCCcccccccc---
Q 012060 203 VASAHWTDPS---DPRIYRATVTAIADSPTTVFS-SLVCP-H-KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK--- 273 (472)
Q Consensus 203 p~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-Gg~~~-~-~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~--- 273 (472)
+.+.+|..+. .++.+|++++ +++.+.+||+ ||.+. + .+|.+-+||+.+.+ |+.+....
T Consensus 146 ~~t~~W~~l~~~~~~P~~r~~Hs-~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~------------W~~~~~~g~~P 212 (482)
T KOG0379|consen 146 LSTRTWSLLSPTGDPPPPRAGHS-ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST------------WSELDTQGEAP 212 (482)
T ss_pred CCCCcEEEecCcCCCCCCcccce-EEEECCEEEEECCccCcccceeeeeeecccccc------------ceecccCCCCC
Confidence 9999999865 4677899996 9999999999 88776 3 69999999999944 88775421
Q ss_pred eeE-----EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 274 LTW-----IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 274 ~~~-----~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
.+| ...++++|++||.+....+++++-++|.++-+ |....+ +....+|.+|.. ++.+..+|++||..
T Consensus 213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~--W~~~~~~g~~p~~R~~h~~-----~~~~~~~~l~gG~~ 285 (482)
T KOG0379|consen 213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWE--WKLLPTGGDLPSPRSGHSL-----TVSGDHLLLFGGGT 285 (482)
T ss_pred CCCCCceEEEECCeEEEEeccccCCceecceEeeecccce--eeeccccCCCCCCcceeee-----EEECCEEEEEcCCc
Confidence 122 23888999988766333478999999999966 885554 344799999996 58899999999966
Q ss_pred CC-c-ccccccccC--CCCcEEeecCC
Q 012060 348 GD-I-AMADLRNLG--EDPWVYMEDKN 370 (472)
Q Consensus 348 g~-~-~~~dl~s~e--~d~W~~~~~~~ 370 (472)
.. . ...|+-.+. ++.|..+....
T Consensus 286 ~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 286 DPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccccccccccceeeeeccc
Confidence 53 1 233343333 89999988744
|
|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-12 Score=134.70 Aligned_cols=93 Identities=31% Similarity=0.483 Sum_probs=82.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccC--CC----------CCCCCCEEEcCChhhHHHHhhccccCcccC
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSN--RQ----------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPS 80 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~--~~----------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~ 80 (472)
..++.|+|||||.++.+.+.+|.+ +|.+.|.++.+ ++ +..++|||+||+|.+|..||+|+|||+||.
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecc
Confidence 345689999999999999999999 89999998865 21 457899999999999999999999999998
Q ss_pred CCCCcchHHHHhhhhhcCcch-HHhhhc
Q 012060 81 TASRFSKQELADEALYYGIDS-QLKSAM 107 (472)
Q Consensus 81 ~~~~~~v~~Ll~eA~~~ql~~-l~~~c~ 107 (472)
+ .+.|...+.+|..||+|++ .++.||
T Consensus 107 p-~~vC~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 107 P-ADVCPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred c-cccchHHHHHHHHHhCCChhhhhHHh
Confidence 6 5689999999999999998 567888
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=118.76 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=132.3
Q ss_pred eEEee-----ccc----CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcc
Q 012060 151 ISVYD-----WNL----SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYR 218 (472)
Q Consensus 151 Ve~YD-----W~~----~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R 218 (472)
+.+|| |.. ...|-.|-+| ++|++++.+|+.||.+.+-....+.+..+|-.|.+|..+. .++.-|
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPgaRDGH----sAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPGARDGH----SACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred eeeeccccccccccceeeecCCccCCc----eeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 77898 865 3567788888 4567999999999943222334455778899999998864 566678
Q ss_pred cceeEEEEeCCeEEE-EecCC--C--------CCceeEEEeCCCcccccccccccCCCcccccccce-e-------EEec
Q 012060 219 ATVTAIADSPTTVFS-SLVCP--H--------KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL-T-------WIPA 279 (472)
Q Consensus 219 ~~~~ava~l~g~IYA-Gg~~~--~--------~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-~-------~~~~ 279 (472)
..+. +.++++++|+ ||... + .-+.+..+|..| ..|+..++... + -...
T Consensus 183 DFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T------------~aW~r~p~~~~~P~GRRSHS~fvY 249 (392)
T KOG4693|consen 183 DFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT------------GAWTRTPENTMKPGGRRSHSTFVY 249 (392)
T ss_pred hhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEeccc------------cccccCCCCCcCCCcccccceEEE
Confidence 7774 8899999999 87543 1 146788889988 33988765211 1 1248
Q ss_pred CCeEEEEEEeCCCcc-ccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCC
Q 012060 280 TGVVLGSAIAWGAFG-YSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~-~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
+++||+.||++|... +.+.+.||||+|.- |..+.+ +...++|..+| .++.++++|..||.+-
T Consensus 250 ng~~Y~FGGYng~ln~HfndLy~FdP~t~~--W~~I~~~Gk~P~aRRRqC-----~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 250 NGKMYMFGGYNGTLNVHFNDLYCFDPKTSM--WSVISVRGKYPSARRRQC-----SVVSGGKVYLFGGTSP 313 (392)
T ss_pred cceEEEecccchhhhhhhcceeecccccch--heeeeccCCCCCccccee-----EEEECCEEEEecCCCC
Confidence 999999999988743 46799999999999 999988 55578888888 4888999999999763
|
|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-12 Score=128.29 Aligned_cols=93 Identities=27% Similarity=0.479 Sum_probs=80.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
+.++.+.|||.|++|+|.|.||.+ +|+++|..-=... ..+.++||+||||++|++||+|+|||+|+.+ ..++++..
T Consensus 37 r~De~lvlNvSGrRFeTWknTLer-yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyP-R~ECi~Ay 114 (632)
T KOG4390|consen 37 RQDELLVLNVSGRRFETWKNTLER-YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYP-RHECISAY 114 (632)
T ss_pred ccCcEEEEeccccchhHHHhHHHh-CchhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccCc-hHHHHHHh
Confidence 567788999999999999999999 9999887642211 4578899999999999999999999999975 77899999
Q ss_pred HhhhhhcCcch-HHhhhc
Q 012060 91 ADEALYYGIDS-QLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~-l~~~c~ 107 (472)
-+|..||||.+ ++--||
T Consensus 115 DeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 115 DEELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhhHhcccHHHHhhhh
Confidence 99999999876 667788
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=118.05 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=148.6
Q ss_pred CCCCccccccccceeeeeCCeEEEEcCcCCCCc--eecceeeeecCCCCccccCC--CCcCcccceeEEEEeCCeEEE-E
Q 012060 160 HSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGI--HFYDLSSSRHVASAHWTDPS--DPRIYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 160 ~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~--~~l~sve~ydp~t~~W~~~a--~m~~~R~~~~ava~l~g~IYA-G 234 (472)
+.|++|+++... +-=..+.|++.||+.++|. +.+|....|+..+++|..+. +.+.+|+++.||++-.|.||. |
T Consensus 62 ~~PspRsn~sl~--~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLF--ANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCccee--eccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 566777776331 1124568999999867775 56889999999999999964 466889999866666689999 8
Q ss_pred ecCC-------CCCceeEEEeCCCcccccccccccCCCcccccccc--ee----EE-ecCCeEEEEEEeCCCcc---ccc
Q 012060 235 LVCP-------HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK--LT----WI-PATGVVLGSAIAWGAFG---YSG 297 (472)
Q Consensus 235 g~~~-------~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~--~~----~~-~~~g~Lyv~Gg~~g~~~---~~~ 297 (472)
|.-. +.-+-...+|..|.+ |+.+.... -+ |+ ...+.|+..||+-.... |.+
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trk------------weql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyN 207 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRK------------WEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYN 207 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccch------------heeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEee
Confidence 7532 125778899999944 98876521 12 22 36778888777533322 678
Q ss_pred eEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccCCCcc---------cccccccC-----CC-
Q 012060 298 YVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA---------MADLRNLG-----ED- 361 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~---------~~dl~s~e-----~d- 361 (472)
.|.+||..|=+ |+-.+| +...++|.|+|| .+.-.+.||+-||++-... ..|+=.+. .|
T Consensus 208 Dvy~FdLdtyk--W~Klepsga~PtpRSGcq~----~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dK 281 (521)
T KOG1230|consen 208 DVYAFDLDTYK--WSKLEPSGAGPTPRSGCQF----SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDK 281 (521)
T ss_pred eeEEEecccee--eeeccCCCCCCCCCCcceE----EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcc
Confidence 99999999999 999999 334899999998 4444999999999773221 12332222 33
Q ss_pred -CcEEeec-CCCCcccCCCCCCCcCeEEEEECC-EEEEecC
Q 012060 362 -PWVYMED-KNPSMISSSGNNNGENKLIHCYKN-QVFVGRG 399 (472)
Q Consensus 362 -~W~~~~~-~~~~m~~~~~~~~~~~~~~~~~~g-~l~~~~g 399 (472)
+|+.|.+ ..+| .+| ++.++++.-+ |-+..||
T Consensus 282 w~W~kvkp~g~kP--spR-----sgfsv~va~n~kal~FGG 315 (521)
T KOG1230|consen 282 WVWTKVKPSGVKP--SPR-----SGFSVAVAKNHKALFFGG 315 (521)
T ss_pred eeEeeccCCCCCC--CCC-----CceeEEEecCCceEEecc
Confidence 4555544 3344 888 4777776665 8888777
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-10 Score=96.02 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCcEEEEEC-CeEEEEeHHHhhccCCCCccccccCCC-CCCCC--CEEE-cCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 14 NGDRVKLNVG-GKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPN--PIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 14 ~~~~V~LnVG-G~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~--~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
...|++|.|+ |+.|.+||.+|++. |+||+.||+.. ..+.. ++-+ +.+++.|+.+|+|+|++++.++ ...++.
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~--S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~ 85 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAAR--SPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVE 85 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHH--BHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHH
T ss_pred CCCCEEEEECCCEEEeechhhhhcc--chhhhhcccccccccccccccccccccccccccccccccCCcccCC-HHHHHH
Confidence 4569999999 89999999999998 88999999875 23332 3433 7999999999999999999876 238999
Q ss_pred HHHhhhhhcCcchHHhhhc
Q 012060 89 ELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~ 107 (472)
.++..|.+|+++.+.+.|+
T Consensus 86 ~ll~lA~~~~~~~L~~~~~ 104 (111)
T PF00651_consen 86 ELLELADKLQIPELKKACE 104 (111)
T ss_dssp HHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999996
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-08 Score=99.49 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=128.7
Q ss_pred eEEee-----ccc---CCCCCccccccccceeeeeCCeEEEEcCcCCC-----CceecceeeeecCCCCccccCCC--Cc
Q 012060 151 ISVYD-----WNL---SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS-----GIHFYDLSSSRHVASAHWTDPSD--PR 215 (472)
Q Consensus 151 Ve~YD-----W~~---~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~-----g~~~l~sve~ydp~t~~W~~~a~--m~ 215 (472)
+..|| |.. +..|++|+.|.+| ++-.|.||+.||+ +. -.++++..+.+|..+++|+++.. -+
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~pRsshq~v---a~~s~~l~~fGGE-faSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPPPRSSHQAV---AVPSNILWLFGGE-FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeEEeccccceeEeccCCCcCCCccceeE---EeccCeEEEeccc-cCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 55566 976 6678889988654 3456899999997 32 23667888999999999999764 56
Q ss_pred CcccceeEEEEeCCeEEE--EecCCC----CCceeEEEeCCCcccccccccccCCCcccccccc---eeEE-----ec-C
Q 012060 216 IYRATVTAIADSPTTVFS--SLVCPH----KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK---LTWI-----PA-T 280 (472)
Q Consensus 216 ~~R~~~~ava~l~g~IYA--Gg~~~~----~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~---~~~~-----~~-~ 280 (472)
.+|+++- ..+...+|+. ||++.. ..|-|-+||..|-+ |+.+.|.. .+|. +. +
T Consensus 176 S~RSGHR-MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk------------W~Klepsga~PtpRSGcq~~vtpq 242 (521)
T KOG1230|consen 176 SPRSGHR-MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK------------WSKLEPSGAGPTPRSGCQFSVTPQ 242 (521)
T ss_pred CCCccce-eEEeeeeEEEEcceecCCCceEEeeeeEEEecccee------------eeeccCCCCCCCCCCcceEEecCC
Confidence 7899996 8999988777 555542 38999999999955 98887632 3333 34 8
Q ss_pred CeEEEEEEeCCCc-------c-ccceEEEEcCCC---CeeeeEEcCCCCC-CCCcccccccceeeeecCCeEEEEcc
Q 012060 281 GVVLGSAIAWGAF-------G-YSGYVRMWDPRS---GEVVWETNEPGSG-RSARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 281 g~Lyv~Gg~~g~~-------~-~~~sve~yDp~~---~~~vW~~~~~~~~-~~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
|-||+-||+.-.. | .+..+-..+|++ ++=+|+.+.|..+ .++|.|.++ ++.-+++-|..||
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv----~va~n~kal~FGG 315 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSV----AVAKNHKALFFGG 315 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeE----EEecCCceEEecc
Confidence 9999988864221 1 467899999988 3545777777434 699999987 5566778888998
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=78.65 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=42.3
Q ss_pred ccccccccceeeeeCCeEEEEcCcCCCC-ceecceeeeecCCCCccccCCCCcCcc
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYSSG-IHFYDLSSSRHVASAHWTDPSDPRIYR 218 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~~g-~~~l~sve~ydp~t~~W~~~a~m~~~R 218 (472)
+|.++ ++++++++||++|| ..+ ...++.+++|||.+++|+.+++|+.+|
T Consensus 1 pR~~~----s~v~~~~~iyv~GG--~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGH----SAVVVGGKIYVFGG--YDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccC----EEEEECCEEEEECC--CCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 46777 44569999999999 555 678899999999999999999999987
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-08 Score=70.21 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=41.4
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT 229 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g 229 (472)
+||++|| +.+...++.+++|||.+++|..+++|+.+|..++ ++++++
T Consensus 1 ~iyv~GG--~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~g 47 (47)
T smart00612 1 KIYVVGG--FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHG-VAVING 47 (47)
T ss_pred CEEEEeC--CCCCceeeeEEEECCCCCeEccCCCCCCccccce-EEEeCC
Confidence 4899999 6666678999999999999999999999999995 787764
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-08 Score=73.05 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=39.1
Q ss_pred ccccccccceeeeeCCeEEEEcCcCCCC-ceecceeeeecCCCCccccCCCCc
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYSSG-IHFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~~g-~~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
+|++++ ++++++.||++|| +++ ...++++++||+.+++|..+++|+
T Consensus 1 pR~~~~----~~~~~~~iyv~GG--~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHA----AVVVGNKIYVIGG--YDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEE----EEEETTEEEEEEE--BESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCE----EEEECCEEEEEee--ecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 467774 4569999999999 666 788999999999999999999985
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-08 Score=70.80 Aligned_cols=47 Identities=11% Similarity=-0.085 Sum_probs=40.1
Q ss_pred cccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeE
Q 012060 217 YRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW 276 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~ 276 (472)
+|..++ +++++++||+ ||++. ..++.||+|||+|+ +|+.+++|+.+|
T Consensus 1 pR~~~s-~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~------------~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHS-AVVVGGKIYVFGGYDNSGKYSNDVERYDPETN------------TWEQLPPMPTPR 50 (50)
T ss_pred CCccCE-EEEECCEEEEECCCCCCCCccccEEEEcCCCC------------cEEECCCCCCCC
Confidence 478885 8999999999 88876 34899999999993 499999998764
|
|
| >KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-08 Score=102.36 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCE-EEcCChhhHHHHhhccccCcccCCCCC------
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPI-FIDRDPDVFSVLLSLLRSNRLPSTASR------ 84 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~v-fiDrdp~~F~~IL~flrtg~l~~~~~~------ 84 (472)
.-.||++.|..++|++||.+||+. ++||+||.-+. ++.+..| ..+-+.++|+.+|.|+|||++.+....
T Consensus 43 ~y~DVtfvve~~rfpAHRvILAaR--s~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld 120 (620)
T KOG4350|consen 43 DYSDVTFVVEDTRFPAHRVILAAR--SSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLD 120 (620)
T ss_pred cccceEEEEeccccchhhhhHHHH--HHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHH
Confidence 456999999999999999999998 99999997554 5666677 457789999999999999998765311
Q ss_pred ---------------------------cchHHHHhhhhhcCcchHHhhhc
Q 012060 85 ---------------------------FSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 85 ---------------------------~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
.|+-.++++|.+||+.++.+.|+
T Consensus 121 ~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 121 YLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence 34555667889999999999998
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=89.04 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=122.2
Q ss_pred cEEEeeeCceEE--ee------------ccc--------CCCCCccccccccceeeeeCCeEEEEcCcCCCCc-------
Q 012060 142 SLWIAHGGQISV--YD------------WNL--------SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGI------- 192 (472)
Q Consensus 142 ~l~va~GG~Ve~--YD------------W~~--------~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~------- 192 (472)
.|+ ++||+||+ |. |.. .+.+-+|.+| +..+.+++.|+.||...+..
T Consensus 93 ril-vFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGH----SFsl~gnKcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 93 RIL-VFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGH----SFSLVGNKCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred eEE-EEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCc----eeEEeccEeEEeccccccccCcccccc
Confidence 455 78898776 33 542 2445678888 45568999999999521111
Q ss_pred eecceeeee----cCCCCccccC---CCCcCcccceeEEEEe--C---CeEEE-EecCCCCCceeEEEeCCCcccccccc
Q 012060 193 HFYDLSSSR----HVASAHWTDP---SDPRIYRATVTAIADS--P---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIG 259 (472)
Q Consensus 193 ~~l~sve~y----dp~t~~W~~~---a~m~~~R~~~~ava~l--~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~ 259 (472)
+.||..... -+.-.-|... ...+.+|.++.||.-. | .++|+ ||-++-+|......|.+|+.
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~------ 241 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLT------ 241 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceee------
Confidence 223322211 1333457543 3566778888644321 2 36899 99998889999999999965
Q ss_pred cccCCCccc-----ccccceeEE---ecCCeEEEEEEeC------CC-------ccccceEEEEcCCCCeeeeEEcCC--
Q 012060 260 RQSGASSKN-----MAVGKLTWI---PATGVVLGSAIAW------GA-------FGYSGYVRMWDPRSGEVVWETNEP-- 316 (472)
Q Consensus 260 ~~~~~~W~~-----v~~m~~~~~---~~~g~Lyv~Gg~~------g~-------~~~~~sve~yDp~~~~~vW~~~~~-- 316 (472)
|+. ++||.+..+ ...|++|+.||+- -. -.+-++.-||+..+.. |+..-.
T Consensus 242 ------W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~--W~tl~~d~ 313 (830)
T KOG4152|consen 242 ------WNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMA--WETLLMDT 313 (830)
T ss_pred ------cccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchh--eeeeeecc
Confidence 765 456655443 3899999998841 11 0034589999999999 998632
Q ss_pred ---CCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 317 ---GSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 317 ---~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
-...+.|.||| ++..+.+||.--|.||-
T Consensus 314 ~ed~tiPR~RAGHC-----AvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 314 LEDNTIPRARAGHC-----AVAIGTRLYIWSGRDGY 344 (830)
T ss_pred ccccccccccccce-----eEEeccEEEEEeccchh
Confidence 11357899999 47779999999998863
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-07 Score=66.76 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=37.4
Q ss_pred cccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccc
Q 012060 217 YRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK 273 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~ 273 (472)
+|++++ +++++++||+ ||.+. ..+++||+|||.+++ |+.+++|.
T Consensus 1 pR~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~------------W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHA-AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNT------------WEELPPMP 47 (47)
T ss_dssp -BBSEE-EEEETTEEEEEEEBESTSSBEEEEEEEETTTTE------------EEEEEEES
T ss_pred CCccCE-EEEECCEEEEEeeecccCceeeeEEEEeCCCCE------------EEEcCCCC
Confidence 588885 9999999999 88876 359999999999944 99999984
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=60.10 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=35.1
Q ss_pred eEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 282 VVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 282 ~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
+||++||.++.. ..+++|+|||++++ |+..++ |..+|..+++
T Consensus 1 ~iyv~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~--~~~~r~~~~~ 42 (47)
T smart00612 1 KIYVVGGFDGGQ-RLKSVEVYDPETNK--WTPLPS--MPTPRSGHGV 42 (47)
T ss_pred CEEEEeCCCCCc-eeeeEEEECCCCCe--EccCCC--CCCccccceE
Confidence 489999986532 56799999999999 999998 5888988874
|
|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-06 Score=88.09 Aligned_cols=88 Identities=27% Similarity=0.411 Sum_probs=74.0
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccC-cccCCCCCcchH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSN-RLPSTASRFSKQ 88 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg-~l~~~~~~~~v~ 88 (472)
...++|+|||.|-+|+|...||++ +|+++|..--.+. .+..+|||+||+.-.|+.||.|+.+| +|. .|-+....
T Consensus 58 ~~~ervvINisGlRFeTql~TL~q-fP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlr-RPvnVPlD 135 (507)
T KOG1545|consen 58 CCCERVVINISGLRFETQLKTLAQ-FPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR-RPVNVPLD 135 (507)
T ss_pred ccccEEEEEeccceehHHHHHHhh-CchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceec-CCccccHH
Confidence 345899999999999999999999 9999988653321 56789999999999999999999886 566 34456778
Q ss_pred HHHhhhhhcCcchH
Q 012060 89 ELADEALYYGIDSQ 102 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l 102 (472)
-+++|.+||||.+-
T Consensus 136 iF~eEirFyqlG~e 149 (507)
T KOG1545|consen 136 IFLEEIRFYQLGDE 149 (507)
T ss_pred HHHHHHHHHHhhHH
Confidence 89999999999873
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-06 Score=60.84 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=38.0
Q ss_pred ccccccccceeeeeCCeEEEEcCcCC---CCceecceeeeecCCCCccccCCCCc
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYS---SGIHFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~---~g~~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
+|.+| ++++++++||++|| + .+....+.++.||+.+++|+.+++|.
T Consensus 1 ~r~~h----s~~~~~~kiyv~GG--~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGH----SAVVLDGKIYVFGG--YGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred Cccce----EEEEECCEEEEECC--cccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 46666 34569999999999 5 56677889999999999999999873
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00027 Score=71.79 Aligned_cols=231 Identities=13% Similarity=0.122 Sum_probs=135.3
Q ss_pred CcEEEeee--Cc-eEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCcCC---CCceecceeeeecCCC
Q 012060 141 GSLWIAHG--GQ-ISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSDYS---SGIHFYDLSSSRHVAS 205 (472)
Q Consensus 141 g~l~va~G--G~-Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~---~g~~~l~sve~ydp~t 205 (472)
..+||..| |. -...| |+. +.-+ ..|-+.- .++++++||+.||... .-...++.+.+|||.+
T Consensus 47 ~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~----~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ 122 (381)
T COG3055 47 DTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAV----AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST 122 (381)
T ss_pred ceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccch----heeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence 47888777 32 22233 987 5444 4455532 2469999999999310 1245688999999999
Q ss_pred CccccCCCCcCcccceeE-EEEeCC-eEEE-EecCC----------------------------------C-CCceeEEE
Q 012060 206 AHWTDPSDPRIYRATVTA-IADSPT-TVFS-SLVCP----------------------------------H-KENSVLLI 247 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~a-va~l~g-~IYA-Gg~~~----------------------------------~-~l~sVE~Y 247 (472)
|+|..+.. +.+|-.+++ .+.+++ +||. ||.+. . ...-|-.|
T Consensus 123 nsW~kl~t-~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy 201 (381)
T COG3055 123 NSWHKLDT-RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY 201 (381)
T ss_pred Chhheecc-ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence 99998743 334444443 345666 7888 87431 0 13457788
Q ss_pred eCCCcccccccccccCCCcccccccceeEEe--------cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIP--------ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--------~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
||.+ +.|+..... ++++ -+|.|..+-|.--+.=...-+-.+|...+..-|........
T Consensus 202 ~p~~------------n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 202 DPST------------NQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred cccc------------chhhhcCcC--cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 8888 448887531 2221 35534443332122102336778888888777988854322
Q ss_pred CCCcccccccceeeeecCCeEEEEcccC--CC--------ccccc-ccc--------cCCCCcEEeecCCCCcccCCCCC
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKS--GD--------IAMAD-LRN--------LGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~--g~--------~~~~d-l~s--------~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
...---.++|=-=..-.++.+-+.||.. |. .+..+ |.. ...+.|..+.. |+.+.
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~Ge----Lp~~l--- 340 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGE----LPQGL--- 340 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecc----cCCCc---
Confidence 2222213331111335567777777733 11 11001 210 11889999998 66655
Q ss_pred CCcCeEEEEECCEEEEecC
Q 012060 381 NGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~~g 399 (472)
++-....+++.||+.+|
T Consensus 341 --~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 341 --AYGVSLSYNNKVLLIGG 357 (381)
T ss_pred --cceEEEecCCcEEEEcc
Confidence 46667789999999999
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=58.70 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=40.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~ 226 (472)
++.+|+.||....+...++.+..||+.+++|+.+++++.+|++++ +++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~-~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHT-ATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceE-EEE
Confidence 478999999321267889999999999999999999999999996 654
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=76.22 Aligned_cols=213 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcccceeEEEEeCCeEEE-E
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R~~~~ava~l~g~IYA-G 234 (472)
.+-+.+|.+|-++ ++...|.+.|| ..-...+....|+..+|+|.-.+ +.+..-+.++ ....+..||+ |
T Consensus 27 GPvPrpRHGHRAV----aikELiviFGG---GNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~G-fvcdGtrilvFG 98 (830)
T KOG4152|consen 27 GPVPRPRHGHRAV----AIKELIVIFGG---GNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG-FVCDGTRILVFG 98 (830)
T ss_pred CCCCCccccchhe----eeeeeEEEecC---CcccchhhhhhhccccceeecchhcCCCCCchhhcc-eEecCceEEEEc
Confidence 3455666666433 48889999998 33356778889999999998643 3444445554 4445667999 7
Q ss_pred ecCCCCCceeEEEeCCCcccccccccccCCCcccccc-------cceeEE-----ecCCeEEEEEEeCCCc--------c
Q 012060 235 LVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-------GKLTWI-----PATGVVLGSAIAWGAF--------G 294 (472)
Q Consensus 235 g~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-------m~~~~~-----~~~g~Lyv~Gg~~g~~--------~ 294 (472)
|--..--.|=+-|.... .| =+|+.+.| -..+|+ ...++-|+.||....+ .
T Consensus 99 GMvEYGkYsNdLYELQa-------sR---WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 99 GMVEYGKYSNDLYELQA-------SR---WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred cEeeeccccchHHHhhh-------hh---hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 63221122334444443 11 23655544 122233 3789999988742111 1
Q ss_pred ccceEEEEc--CCCCeeeeEEcCC-CCCCCCcccccccceeeeec------CCeEEEEcccCCCcccccccccC--CCCc
Q 012060 295 YSGYVRMWD--PRSGEVVWETNEP-GSGRSARFGDSFADVDVDVD------ELTLFKICSKSGDIAMADLRNLG--EDPW 363 (472)
Q Consensus 295 ~~~sve~yD--p~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~------~~~iy~vGg~~g~~~~~dl~s~e--~d~W 363 (472)
|+++..... |-++.+.|+..-- +....+|--|. ++.+ ..++|+.||.+|. ...||=.+. +-.|
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHT-----AViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W 242 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHT-----AVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTW 242 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccce-----eEEEEeccCCcceEEEEcccccc-cccceeEEecceeec
Confidence 455444444 5567777986533 44577888886 3444 4689999998864 333554333 5557
Q ss_pred EEe-----ecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 364 VYM-----EDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 364 ~~~-----~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
+.. +|+++++...- .-+-+..+++|||=..+.
T Consensus 243 ~kp~~~G~~PlPRSLHsa~----~IGnKMyvfGGWVPl~~~ 279 (830)
T KOG4152|consen 243 NKPSLSGVAPLPRSLHSAT----TIGNKMYVFGGWVPLVMD 279 (830)
T ss_pred ccccccCCCCCCcccccce----eecceeEEecceeeeecc
Confidence 653 44444333222 234455555555544444
|
|
| >KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.7e-05 Score=77.04 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=76.4
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC-----CCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-----SDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRF 85 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-----~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~ 85 (472)
...+.+++.|.+.+|...+.+|+. .|.+++..||... .++.+||.. ++...+|+.||+|+.+|.|..+ +..
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~-~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP-~~v 170 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTS-KPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCP-SSV 170 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecC-CcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCC-CCC
Confidence 467899999999999999999999 7999999999754 467788864 6899999999999999999986 568
Q ss_pred chHHHHhhhhhcCcch
Q 012060 86 SKQELADEALYYGIDS 101 (472)
Q Consensus 86 ~v~~Ll~eA~~~ql~~ 101 (472)
.+.+|.++++|+-|.-
T Consensus 171 SvpELrEACDYLlipF 186 (438)
T KOG3840|consen 171 SVSELREACDYLLVPF 186 (438)
T ss_pred chHHHHhhcceEEeec
Confidence 9999999999987765
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=56.14 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=35.9
Q ss_pred cccceeEEEEeCCeEEE-Eec---CC-CCCceeEEEeCCCcccccccccccCCCccccccc
Q 012060 217 YRATVTAIADSPTTVFS-SLV---CP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG 272 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYA-Gg~---~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m 272 (472)
+|..++ +++++++||+ ||+ .. ...+.+++||++|++ |+.+++|
T Consensus 1 ~r~~hs-~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~------------W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHS-AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ------------WTELSPM 48 (49)
T ss_pred CccceE-EEEECCEEEEECCcccCCCCcccceeEEEECCCCE------------EeecCCC
Confidence 477885 8999999999 888 22 358999999999944 9999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.7e-05 Score=81.35 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=79.1
Q ss_pred CCCcEEEEEC-----CeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE-EcCChhhHHHHhhccccCcccCCCCCc
Q 012060 14 NGDRVKLNVG-----GKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRF 85 (472)
Q Consensus 14 ~~~~V~LnVG-----G~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~ 85 (472)
...|+++.|| -++|++||-+|+.. |+-|.+||... ++...++- -|++|.+|..+|.|+|.-.+.+.+ +
T Consensus 113 ~~adv~fivg~~~~~~q~~paHk~vla~g--S~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~--d 188 (521)
T KOG2075|consen 113 LLADVHFIVGEEDGGSQRIPAHKLVLADG--SDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAA--D 188 (521)
T ss_pred ccceeEEEeccCCCcccccchhhhhhhcc--hHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhH--H
Confidence 4458888887 37999999999997 89999999876 45567775 499999999999999999888866 8
Q ss_pred chHHHHhhhhhcCcchHHhhhc
Q 012060 86 SKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 86 ~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
++-.+|.+|+-|-+..+.+.|.
T Consensus 189 tvi~tl~~AkKY~VpaLer~CV 210 (521)
T KOG2075|consen 189 TVITTLYAAKKYLVPALERQCV 210 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999997
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00069 Score=68.91 Aligned_cols=193 Identities=19% Similarity=0.170 Sum_probs=121.0
Q ss_pred eeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCC-CcCcccceeEEEEeCCeEEE-EecCC------CCCceeEEE
Q 012060 176 HVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-PRIYRATVTAIADSPTTVFS-SLVCP------HKENSVLLI 247 (472)
Q Consensus 176 ~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-m~~~R~~~~ava~l~g~IYA-Gg~~~------~~l~sVE~Y 247 (472)
.+++.+||.=| ..|...+ ++--+-....|++++. +-.+|.... .++++++||+ ||... ..++.+=+|
T Consensus 44 ~ig~~~YVGLG--s~G~afy--~ldL~~~~k~W~~~a~FpG~~rnqa~-~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y 118 (381)
T COG3055 44 LIGDTVYVGLG--SAGTAFY--VLDLKKPGKGWTKIADFPGGARNQAV-AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRY 118 (381)
T ss_pred eecceEEEEec--cCCccce--ehhhhcCCCCceEcccCCCcccccch-heeeCCeEEEeeccccCCCCCceEeeeeEEe
Confidence 46789998766 4453322 1122233467999986 457788863 7889999999 87653 127899999
Q ss_pred eCCCcccccccccccCCCccccccccee------EEecCC-eEEEEEEeCCC-----cc---------------------
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLT------WIPATG-VVLGSAIAWGA-----FG--------------------- 294 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~------~~~~~g-~Lyv~Gg~~g~-----~~--------------------- 294 (472)
||.+ |+|+.....+-. ...+++ .||..||.+-. +.
T Consensus 119 ~p~~------------nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 119 DPST------------NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred cCCC------------ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 9999 449988663222 112555 89988875311 00
Q ss_pred -------ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC--------
Q 012060 295 -------YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-------- 359 (472)
Q Consensus 295 -------~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-------- 359 (472)
....|-.|||.+++ |...... .-..++|.+ ++-.+++|-.|-|.-=+ -||+.|
T Consensus 187 ~~~~dy~~n~ev~sy~p~~n~--W~~~G~~-pf~~~aGsa-----~~~~~n~~~lInGEiKp----GLRt~~~k~~~~~~ 254 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPSTNQ--WRNLGEN-PFYGNAGSA-----VVIKGNKLTLINGEIKP----GLRTAEVKQADFGG 254 (381)
T ss_pred CCHHHhcccccccccccccch--hhhcCcC-cccCccCcc-----eeecCCeEEEEcceecC----CccccceeEEEecc
Confidence 24578899999999 9887631 245566655 46678878888873311 177776
Q ss_pred -CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 360 -EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 360 -~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
.-+|..+++++.+.....+|.+.... --.+|.+.+.+|
T Consensus 255 ~~~~w~~l~~lp~~~~~~~eGvAGaf~--G~s~~~~lv~GG 293 (381)
T COG3055 255 DNLKWLKLSDLPAPIGSNKEGVAGAFS--GKSNGEVLVAGG 293 (381)
T ss_pred CceeeeeccCCCCCCCCCccccceecc--ceeCCeEEEecC
Confidence 55799998866663333333211111 134455555555
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.2e-05 Score=55.76 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=27.4
Q ss_pred ccccccccceeeee-CCeEEEEcCcCCCCc-eecceeeeecCCCCccccCCCCc
Q 012060 164 VRTHLDNITSIRHV-WSDVAAVGSDYSSGI-HFYDLSSSRHVASAHWTDPSDPR 215 (472)
Q Consensus 164 ~R~~~~~v~~v~~l-~~~lYavGG~~~~g~-~~l~sve~ydp~t~~W~~~a~m~ 215 (472)
+|..|. ++.+ ++.||++|| .+.. ..++.++.||+.+++|+.+++|+
T Consensus 1 pR~~h~----~~~~~~~~i~v~GG--~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHS----AVSIGDNSIYVFGG--RDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-E----EEEE-TTEEEEE----EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEE----EEEEeCCeEEEECC--CCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 466664 3346 589999999 4443 68999999999999999998875
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.027 Score=58.86 Aligned_cols=236 Identities=14% Similarity=0.212 Sum_probs=121.2
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCc--------CcccceeEEEEeCCeEEEEecCCCCCcee
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPR--------IYRATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~--------~~R~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
++.++.||+... +| .+.++|.. ...|..-.+-. ..+... +.++.++.||+|..+ ..+
T Consensus 66 vv~~~~vy~~~~---~g-----~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~v~v~~~~----g~l 132 (394)
T PRK11138 66 AVAYNKVYAADR---AG-----LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSG-GVTVAGGKVYIGSEK----GQV 132 (394)
T ss_pred EEECCEEEEECC---CC-----eEEEEECCCCcEeeEEcCCCccccccccccccccc-ccEEECCEEEEEcCC----CEE
Confidence 457899998775 33 35666654 34476422110 112222 267788999996433 357
Q ss_pred EEEeCCCcccccccccccCCCccccccccee--EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAVGKLT--WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~--~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
-++|++| |+ ..|+.-.+.... -...++++|+..+ .+.+.++|+++++++|+..........
T Consensus 133 ~ald~~t-------G~---~~W~~~~~~~~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 133 YALNAED-------GE---VAWQTKVAGEALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred EEEECCC-------CC---CcccccCCCceecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccc
Confidence 8999999 55 558775442111 1225788887532 357999999999999998754211111
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC-cccCCCCCCCcCeEEEEECCEEEEec-CC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS-MISSSGNNNGENKLIHCYKNQVFVGR-GG 400 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~~g~l~~~~-g~ 400 (472)
|.... -++.++.+|+. ..+|.+...|..+ +.-.|..--..+.. ....+.. .....-.+.++.||+.. +|
T Consensus 196 ~~~~s-----P~v~~~~v~~~-~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~~--~~~~sP~v~~~~vy~~~~~g 266 (394)
T PRK11138 196 RGESA-----PATAFGGAIVG-GDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRLV--DVDTTPVVVGGVVYALAYNG 266 (394)
T ss_pred cCCCC-----CEEECCEEEEE-cCCCEEEEEEccC-ChhhheeccccCCCccchhccc--ccCCCcEEECCEEEEEEcCC
Confidence 21111 24456777754 3444433223221 13457642111110 0000000 01122346789999865 45
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec--------cceeEEeecCCC
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED--------VEGIEVWESSNL 465 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~--------~~~~~vw~~~~~ 465 (472)
.+-.++.. -.+.+.++.+ + ....+...|+++|+.-.+ ..|-++|..+.+
T Consensus 267 ~l~ald~~-------tG~~~W~~~~-~--------~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 323 (394)
T PRK11138 267 NLVALDLR-------SGQIVWKREY-G--------SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL 323 (394)
T ss_pred eEEEEECC-------CCCEEEeecC-C--------CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc
Confidence 44443321 1122333321 1 112345566677765433 356789987653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.034 Score=57.47 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=101.1
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.++.+|+.+. +| .+.++|+.+ ..|..-.+-. ... +.++-++.+|++..+ ..+-++|+.+
T Consensus 62 ~v~~~~v~v~~~---~g-----~v~a~d~~tG~~~W~~~~~~~---~~~-~p~v~~~~v~v~~~~----g~l~ald~~t- 124 (377)
T TIGR03300 62 AVAGGKVYAADA---DG-----TVVALDAETGKRLWRVDLDER---LSG-GVGADGGLVFVGTEK----GEVIALDAED- 124 (377)
T ss_pred EEECCEEEEECC---CC-----eEEEEEccCCcEeeeecCCCC---ccc-ceEEcCCEEEEEcCC----CEEEEEECCC-
Confidence 446888887654 33 467777654 4487533221 111 256668899996433 3688999988
Q ss_pred ccccccccccCCCcccccccceeE--EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTW--IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~--~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
|+ -.|+.-.+..... ...++.+|+... .+.+.+||+++++++|+..........+....
T Consensus 125 ------G~---~~W~~~~~~~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s--- 185 (377)
T TIGR03300 125 ------GK---ELWRAKLSSEVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSAS--- 185 (377)
T ss_pred ------Cc---EeeeeccCceeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCC---
Confidence 44 3476543311111 125678887532 35799999999999999876521111121122
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcc-cCCCCCCCcCeEEEEECCEEEEec-CCeEEEeec
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMI-SSSGNNNGENKLIHCYKNQVFVGR-GGSLEVWSR 407 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l~~~~-g~~~~v~~~ 407 (472)
.++.++.+| +|..++.+...|+++ +.-.|..--..+.... ..+.. .......+.++.||+.. +|.+-.|+.
T Consensus 186 --p~~~~~~v~-~~~~~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~~~--~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 186 --PVIADGGVL-VGFAGGKLVALDLQT-GQPLWEQRVALPKGRTELERLV--DVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred --CEEECCEEE-EECCCCEEEEEEccC-CCEeeeeccccCCCCCchhhhh--ccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 234456665 555555544334332 1334754211000000 00000 01223345688999874 466666654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00028 Score=66.29 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCcEEEEEC---CeEEEEeHHHhhccCCCCccccccCCCCCCCCCEE-EcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 15 GDRVKLNVG---GKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 15 ~~~V~LnVG---G~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
=.|+++.++ .+.+++|+-+|++. +=|..+-+....+..+.- -|.||++|...|.|+||.+|.+..+..-..++
T Consensus 66 fSDlk~K~~gns~k~i~AHKfVLAAR---sD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el 142 (280)
T KOG4591|consen 66 FSDLKFKFAGNSDKHIPAHKFVLAAR---SDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLEL 142 (280)
T ss_pred ccceeEEecCCccccCchhhhhhhhh---cchhhhccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHH
Confidence 358999999 47899999999995 345555443222223333 38999999999999999999988765667789
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
.+.|.-||++.+...|.
T Consensus 143 ~e~An~FqLe~Lke~C~ 159 (280)
T KOG4591|consen 143 CELANRFQLELLKERCE 159 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999997
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.067 Score=55.92 Aligned_cols=140 Identities=13% Similarity=0.075 Sum_probs=81.5
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
-++.++.||++..+ ..+-++|+.+ |+ ..|+.-......-...++.||++.. .+.+.++|
T Consensus 252 P~v~~~~vy~~~~~----g~l~ald~~t-------G~---~~W~~~~~~~~~~~~~~~~vy~~~~-------~g~l~ald 310 (394)
T PRK11138 252 PVVVGGVVYALAYN----GNLVALDLRS-------GQ---IVWKREYGSVNDFAVDGGRIYLVDQ-------NDRVYALD 310 (394)
T ss_pred cEEECCEEEEEEcC----CeEEEEECCC-------CC---EEEeecCCCccCcEEECCEEEEEcC-------CCeEEEEE
Confidence 34568999994333 2577889998 44 3476532211112346889998642 35799999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEE-eecCCCCcccCCCCCCC
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVY-MEDKNPSMISSSGNNNG 382 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~-~~~~~~~m~~~~~~~~~ 382 (472)
+.+++.+|+..... .+...+ .++.++.|| ++..+|.+...|..+= +=.|.. +. ...
T Consensus 311 ~~tG~~~W~~~~~~----~~~~~s-----p~v~~g~l~-v~~~~G~l~~ld~~tG-~~~~~~~~~-------~~~----- 367 (394)
T PRK11138 311 TRGGVELWSQSDLL----HRLLTA-----PVLYNGYLV-VGDSEGYLHWINREDG-RFVAQQKVD-------SSG----- 367 (394)
T ss_pred CCCCcEEEcccccC----CCcccC-----CEEECCEEE-EEeCCCEEEEEECCCC-CEEEEEEcC-------CCc-----
Confidence 99999999765331 111222 245689998 4566666544333321 212322 11 111
Q ss_pred cCeEEEEECCEEEEe-cCCeEEEeec
Q 012060 383 ENKLIHCYKNQVFVG-RGGSLEVWSR 407 (472)
Q Consensus 383 ~~~~~~~~~g~l~~~-~g~~~~v~~~ 407 (472)
....-++.+++||+. .+|.|-.+..
T Consensus 368 ~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ceeCCEEECCEEEEEeCCceEEEEeC
Confidence 234445689999988 5567766654
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0013 Score=47.96 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=37.1
Q ss_pred CCeEEEEEEeC-CCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 280 TGVVLGSAIAW-GAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 280 ~g~Lyv~Gg~~-g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
++.||+.||.+ .....++++.+||+.+++ |+..++ +..+|.+|++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~~~--~P~~R~~h~~ 46 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRIGD--LPPPRSGHTA 46 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEECCC--CCCCccceEE
Confidence 47899999987 223367899999999999 999966 6889999984
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0008 Score=48.92 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=26.0
Q ss_pred cccceeEEEEe-CCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccc
Q 012060 217 YRATVTAIADS-PTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK 273 (472)
Q Consensus 217 ~R~~~~ava~l-~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~ 273 (472)
+|.+++ ++.+ ++.||+ ||.+. ..++.+++||+.+++ |+.+++|.
T Consensus 1 pR~~h~-~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~------------W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHS-AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNT------------WTRLPSMP 48 (49)
T ss_dssp --BS-E-EEEE-TTEEEEE--EEE-TEE---EEEEETTTTE------------EEE--SS-
T ss_pred CcceEE-EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCE------------EEECCCCC
Confidence 478885 6666 589999 88766 369999999999944 99997763
|
|
| >KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00045 Score=71.00 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=81.5
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEE--E-c--CChhhHHHHhhccccCcccCCCCCc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIF--I-D--RDPDVFSVLLSLLRSNRLPSTASRF 85 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vf--i-D--rdp~~F~~IL~flrtg~l~~~~~~~ 85 (472)
..+.||.|..=|+.-+.|+.-|.+ +.||.+||++- +++.+.|- | | +|..+|+..+.=+|..++.+.. .
T Consensus 67 ~enSDv~l~alg~eWrlHk~yL~Q---S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l--~ 141 (488)
T KOG4682|consen 67 GENSDVILEALGFEWRLHKPYLFQ---SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL--S 141 (488)
T ss_pred CCCcceehhhccceeeeeeeeeec---cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH--H
Confidence 356799999999999999999988 67999999875 55566552 3 3 6889999999999999999876 8
Q ss_pred chHHHHhhhhhcCcchHHhhhc--CCCCCCC
Q 012060 86 SKQELADEALYYGIDSQLKSAM--SPPPLQG 114 (472)
Q Consensus 86 ~v~~Ll~eA~~~ql~~l~~~c~--l~~~l~~ 114 (472)
.+..++.+|.++|++.+++.|. +...|.+
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~lsp 172 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLSP 172 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCh
Confidence 8999999999999999999997 4444444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.31 Score=50.35 Aligned_cols=237 Identities=22% Similarity=0.267 Sum_probs=124.3
Q ss_pred CcEEEeee-CceEEee-------ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC--Cccc
Q 012060 141 GSLWIAHG-GQISVYD-------WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWT 209 (472)
Q Consensus 141 g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~ 209 (472)
+.+|+... |.+.++| |+. ..-. . .+ ..++.++.+|+..+ +| .+.++|+.+ ..|+
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~---~~---~p~v~~~~v~v~~~---~g-----~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSE-V---LS---PPLVANGLVVVRTN---DG-----RLTALDAATGERLWT 170 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCce-e---ec---CCEEECCEEEEECC---CC-----eEEEEEcCCCceeeE
Confidence 55663221 4588888 765 2211 1 11 22335777777554 33 355667654 3476
Q ss_pred cCCCCcC--cccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc--------------cc
Q 012060 210 DPSDPRI--YRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV--------------GK 273 (472)
Q Consensus 210 ~~a~m~~--~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--------------m~ 273 (472)
....... .+.... .++.++.+|++..+ ..+-.+|+.+ |+ -.|+.-.. ..
T Consensus 171 ~~~~~~~~~~~~~~s-p~~~~~~v~~~~~~----g~v~ald~~t-------G~---~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 171 YSRVTPALTLRGSAS-PVIADGGVLVGFAG----GKLVALDLQT-------GQ---PLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred EccCCCceeecCCCC-CEEECCEEEEECCC----CEEEEEEccC-------CC---EeeeeccccCCCCCchhhhhccCC
Confidence 5332211 122222 45567888885433 2577889988 43 33643211 00
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
.+ ...++.||+++. .+.+.+||+++++++|+...+. ... .++.++.||+.. .+|.+...
T Consensus 236 ~p-~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~~~-------~~~-----p~~~~~~vyv~~-~~G~l~~~ 294 (377)
T TIGR03300 236 DP-VVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDASS-------YQG-----PAVDDNRLYVTD-ADGVVVAL 294 (377)
T ss_pred cc-EEECCEEEEEEc-------CCEEEEEECCCCcEEEeeccCC-------ccC-----ceEeCCEEEEEC-CCCeEEEE
Confidence 11 125788888643 3479999999999999886331 122 256789999654 45544432
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEe-cCCeEEEeeccccccccccCCcceeeccccccccC
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVG-RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS 432 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (472)
|..+ +.-.|..-. +.. + ......+.++.||+. ..|.|-+++... .+.+.|- -++
T Consensus 295 d~~t-G~~~W~~~~-----~~~-~-----~~ssp~i~g~~l~~~~~~G~l~~~d~~t-------G~~~~~~-~~~----- 349 (377)
T TIGR03300 295 DRRS-GSELWKNDE-----LKY-R-----QLTAPAVVGGYLVVGDFEGYLHWLSRED-------GSFVARL-KTD----- 349 (377)
T ss_pred ECCC-CcEEEcccc-----ccC-C-----ccccCEEECCEEEEEeCCCEEEEEECCC-------CCEEEEE-EcC-----
Confidence 3321 133465421 111 1 122334578899986 457888886531 1222222 111
Q ss_pred CCCceEEEeecCceEEEeeec
Q 012060 433 GRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 433 ~~~~i~~~~~gg~r~f~~~~~ 453 (472)
..+....-.+-|++||+.-.|
T Consensus 350 ~~~~~~sp~~~~~~l~v~~~d 370 (377)
T TIGR03300 350 GSGIASPPVVVGDGLLVQTRD 370 (377)
T ss_pred CCccccCCEEECCEEEEEeCC
Confidence 112345556667889876544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00081 Score=74.34 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--------------CCCCCCEEE-cCChhhHHHHhhccccCccc
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--------------SDEPNPIFI-DRDPDVFSVLLSLLRSNRLP 79 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--------------~~~~~~vfi-Drdp~~F~~IL~flrtg~l~ 79 (472)
=-||++.||+..|++||=+|++. +++|+.+|-.. ......+|+ |+.|.+|++||+|+||..+-
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~r--s~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCAR--SSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL 635 (1267)
T ss_pred cceEEEEecCeecccceEEEEec--cHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence 35899999999999999999997 88999986421 122234555 79999999999999998543
Q ss_pred CC--CC----------CcchHH-------HHhhhhhcCcchHHhhhc
Q 012060 80 ST--AS----------RFSKQE-------LADEALYYGIDSQLKSAM 107 (472)
Q Consensus 80 ~~--~~----------~~~v~~-------Ll~eA~~~ql~~l~~~c~ 107 (472)
.+ ++ ..|.+. |+.-++.|++.++.....
T Consensus 636 ~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 636 SPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred CCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 22 11 123333 777777788877765543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.96 Score=43.72 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=108.7
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
.+|+.++ .+ +.+..||+.+.+....-+....-.. ++.. ++.+|+++.. .+.+-.||+.+.+++..
T Consensus 44 ~l~~~~~--~~-----~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~g~~l~~~~~~---~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 44 LLYVCAS--DS-----DTIQVIDLATGEVIGTLPSGPDPEL---FALHPNGKILYIANED---DNLVTVIDIETRKVLAE 110 (300)
T ss_pred EEEEEEC--CC-----CeEEEEECCCCcEEEeccCCCCccE---EEECCCCCEEEEEcCC---CCeEEEEECCCCeEEeE
Confidence 4777776 33 3456677776655432111111111 3333 3358884221 24788999998554443
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE 337 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~ 337 (472)
+.. ...+....+.+ ++.+++++..++ ..+..||+++++++.+.... ..++. .. ....+
T Consensus 111 ~~~-------~~~~~~~~~~~-dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~---~~~~~-~~-----~s~dg 168 (300)
T TIGR03866 111 IPV-------GVEPEGMAVSP-DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD---QRPRF-AE-----FTADG 168 (300)
T ss_pred eeC-------CCCcceEEECC-CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC---CCccE-EE-----ECCCC
Confidence 321 01122233333 555555544222 24667899988754443222 11221 11 24445
Q ss_pred CeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEec--CCeEEEeeccccccc
Q 012060 338 LTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGR--GGSLEVWSRVREGRN 413 (472)
Q Consensus 338 ~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~--g~~~~v~~~~~~~~~ 413 (472)
..||+.+..++....-|+++-+. -..+....+...... ....+++. -+..+|++. .+.|.+|+.-..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~----~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--- 239 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEA----VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--- 239 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCccee--eeeeeeccccccccc----CCccceEECCCCCEEEEEcCCCCeEEEEECCCC---
Confidence 56666555565544334443220 011111000000000 01122332 234567763 367999975321
Q ss_pred cccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCC
Q 012060 414 RSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 414 ~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~ 465 (472)
++ ++.. ..++.|..+++ .|.+|+++=.+..-|-||+....
T Consensus 240 -----~~-~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 240 -----EV-LDYL------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred -----cE-EEEE------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 11 2211 11334666665 89999997555667999997653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.86 Score=43.21 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=74.9
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccc--ccee---EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAV--GKLT---WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--m~~~---~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
.+|.++|+.+. + ..|+.-.. -.-. -...++.+|+.. ..+.+.+||+.+++++|+...+
T Consensus 3 g~l~~~d~~tG-------~---~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~ 65 (238)
T PF13360_consen 3 GTLSALDPRTG-------K---ELWSYDLGPGIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLP 65 (238)
T ss_dssp SEEEEEETTTT-------E---EEEEEECSSSCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECS
T ss_pred CEEEEEECCCC-------C---EEEEEECCCCCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeecc
Confidence 46788999883 3 44776321 1111 223688898873 2458999999999999999976
Q ss_pred CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcE-EeecCCCCcccCCCCCCCcCeEEEEECCEEE
Q 012060 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV-YMEDKNPSMISSSGNNNGENKLIHCYKNQVF 395 (472)
Q Consensus 317 ~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~-~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~ 395 (472)
. +.... ....++.||+... ++.+...|+++- .-.|. ..... +.. ... .....++.++++|
T Consensus 66 ~-----~~~~~-----~~~~~~~v~v~~~-~~~l~~~d~~tG-~~~W~~~~~~~-~~~-~~~-----~~~~~~~~~~~~~ 126 (238)
T PF13360_consen 66 G-----PISGA-----PVVDGGRVYVGTS-DGSLYALDAKTG-KVLWSIYLTSS-PPA-GVR-----SSSSPAVDGDRLY 126 (238)
T ss_dssp S-----CGGSG-----EEEETTEEEEEET-TSEEEEEETTTS-CEEEEEEE-SS-CTC-STB-------SEEEEETTEEE
T ss_pred c-----cccce-----eeecccccccccc-eeeeEecccCCc-ceeeeeccccc-ccc-ccc-----cccCceEecCEEE
Confidence 2 11111 2666888887763 223333232222 33587 34321 110 111 3455666788888
Q ss_pred Eec-CCeEEEeec
Q 012060 396 VGR-GGSLEVWSR 407 (472)
Q Consensus 396 ~~~-g~~~~v~~~ 407 (472)
+.. ++.|-.++.
T Consensus 127 ~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 127 VGTSSGKLVALDP 139 (238)
T ss_dssp EEETCSEEEEEET
T ss_pred EEeccCcEEEEec
Confidence 887 677776664
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.58 Score=45.30 Aligned_cols=210 Identities=17% Similarity=0.121 Sum_probs=110.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.||.+-- .. ..+.++||.+.+-....-.. -. +++.. ++.||+... ..+-.+|+.+.+
T Consensus 11 ~g~l~~~D~--~~-----~~i~~~~~~~~~~~~~~~~~----~~-G~~~~~~~g~l~v~~~-----~~~~~~d~~~g~-- 71 (246)
T PF08450_consen 11 DGRLYWVDI--PG-----GRIYRVDPDTGEVEVIDLPG----PN-GMAFDRPDGRLYVADS-----GGIAVVDPDTGK-- 71 (246)
T ss_dssp TTEEEEEET--TT-----TEEEEEETTTTEEEEEESSS----EE-EEEEECTTSEEEEEET-----TCEEEEETTTTE--
T ss_pred CCEEEEEEc--CC-----CEEEEEECCCCeEEEEecCC----Cc-eEEEEccCCEEEEEEc-----CceEEEecCCCc--
Confidence 578888864 22 35677888887754322221 22 25555 788998422 234566998833
Q ss_pred cccccccCCCccccccc-----ceeE-----EecCCeEEEEEEeCCCcccc--ceEEEEcCCCCeeeeEEcCCCCCCCCc
Q 012060 256 SEIGRQSGASSKNMAVG-----KLTW-----IPATGVVLGSAIAWGAFGYS--GYVRMWDPRSGEVVWETNEPGSGRSAR 323 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m-----~~~~-----~~~~g~Lyv~Gg~~g~~~~~--~sve~yDp~~~~~vW~~~~~~~~~~~R 323 (472)
++.+... +..+ ..-+|.||++-......... +.|-++||. ++ .+..... +..+
T Consensus 72 ----------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-~~~p- 136 (246)
T PF08450_consen 72 ----------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-LGFP- 136 (246)
T ss_dssp ----------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-ESSE-
T ss_pred ----------EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-cccc-
Confidence 4444332 1111 12578899976533322122 689999999 65 3333221 1111
Q ss_pred ccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcE---EeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEe--
Q 012060 324 FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV---YMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVG-- 397 (472)
Q Consensus 324 ~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~---~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~-- 397 (472)
.|.+ ..-.+..||+.-...+.....|+.. ++.++. .+.+ +.... | .--++++- +|.||++
T Consensus 137 NGi~-----~s~dg~~lyv~ds~~~~i~~~~~~~-~~~~~~~~~~~~~----~~~~~-g---~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 137 NGIA-----FSPDGKTLYVADSFNGRIWRFDLDA-DGGELSNRRVFID----FPGGP-G---YPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEE-----EETTSSEEEEEETTTTEEEEEEEET-TTCCEEEEEEEEE-----SSSS-C---EEEEEEEBTTS-EEEEEE
T ss_pred cceE-----ECCcchheeecccccceeEEEeccc-cccceeeeeeEEE----cCCCC-c---CCCcceEcCCCCEEEEEc
Confidence 1343 3666778888655444332222221 011122 1222 11111 0 23456653 6899999
Q ss_pred cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEe
Q 012060 398 RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVS 450 (472)
Q Consensus 398 ~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~ 450 (472)
+++.|.++++--. +.+. .+-. ...+++++||| ++||||
T Consensus 203 ~~~~I~~~~p~G~---------~~~~-----i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 203 GGGRIVVFDPDGK---------LLRE-----IELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTTEEEEEETTSC---------EEEE-----EE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEECCCcc---------EEEE-----EcCC-CCCEEEEEEECCCCCEEEEE
Confidence 8899999997411 1121 2223 23799999986 569998
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.017 Score=40.87 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=30.7
Q ss_pred CCCccccccccceeeeeCCeEEEEcCcCCC--CceecceeeeecCCCC
Q 012060 161 SVTVRTHLDNITSIRHVWSDVAAVGSDYSS--GIHFYDLSSSRHVASA 206 (472)
Q Consensus 161 m~~~R~~~~~v~~v~~l~~~lYavGG~~~~--g~~~l~sve~ydp~t~ 206 (472)
+|.+|..|++ +++++.||+.|| .. ....++.+..||..++
T Consensus 1 ~P~~R~~hs~----~~~~~~iyi~GG--~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSA----VVVGNNIYIFGG--YSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEE----EEECCEEEEEcC--ccCCCCCEECcEEEEECCCC
Confidence 3678999854 458999999999 55 3567888888887653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=95.79 E-value=2 Score=41.49 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=104.4
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCC-CcCcccceeEEEEe-CC-eEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-PRIYRATVTAIADS-PT-TVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-m~~~R~~~~ava~l-~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
.+|+.++ .++ .+..||+.+.+-...-. ....+ +++.. ++ .+|+ +.. .+.+-.||+.+.+..
T Consensus 2 ~~~~s~~--~d~-----~v~~~d~~t~~~~~~~~~~~~~~----~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNE--KDN-----TISVIDTATLEVTRTFPVGQRPR----GITLSKDGKLLYVCASD----SDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEec--CCC-----EEEEEECCCCceEEEEECCCCCC----ceEECCCCCEEEEEECC----CCeEEEEECCCCcEE
Confidence 4666666 343 55666766554222111 11122 13333 33 5888 432 357889999985533
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
.++... ..+....+.+-++.||+++.. .+.+..||+++.+.+.+.... ... .+ ++...
T Consensus 67 ~~~~~~-------~~~~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~~~~---~~~---~~---~~~~~ 124 (300)
T TIGR03866 67 GTLPSG-------PDPELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEIPVG---VEP---EG---MAVSP 124 (300)
T ss_pred EeccCC-------CCccEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEeeCC---CCc---ce---EEECC
Confidence 322210 012223344456678776542 347999999998865544322 111 11 12233
Q ss_pred cCCeEEEEcccCCCcc-cccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeecccccc
Q 012060 336 DELTLFKICSKSGDIA-MADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGR 412 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~-~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~ 412 (472)
++.+++++..++... ..|++ ....+.. +..... .......--+.+||++. ++.|.+|+-...+
T Consensus 125 -dg~~l~~~~~~~~~~~~~d~~-----~~~~~~~----~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~- 190 (300)
T TIGR03866 125 -DGKIVVNTSETTNMAHFIDTK-----TYEIVDN----VLVDQR---PRFAEFTADGKELWVSSEIGGTVSVIDVATRK- 190 (300)
T ss_pred -CCCEEEEEecCCCeEEEEeCC-----CCeEEEE----EEcCCC---ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-
Confidence 666676776543211 11221 1222221 101100 01111111233566653 6889999774221
Q ss_pred ccccCCcceee-ccccccccCCCCceE--EEeecCceEEEeeeccceeEEeecC
Q 012060 413 NRSCSEGLFRR-NFVDRVEDSGRGAIS--RIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 413 ~~~~~~~~~r~-~~~~~~~~~~~~~i~--~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..++ .+-........-..+ .++--|.++|++-.+.+.+.||+..
T Consensus 191 -------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 191 -------VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -------eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 1011 010000001111122 2455688888876666778888753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.1 Score=54.98 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=95.5
Q ss_pred EEE-eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeE-EecCCeEEEEEEeCCCccccceEE
Q 012060 224 IAD-SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW-IPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 224 va~-l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~-~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+.+ .||.|+| |...| -|-+||.++-..+..+.. .-+|.+... .+.++.+++.|+.+ ..+.
T Consensus 74 ~~fR~DG~LlaaGD~sG----~V~vfD~k~r~iLR~~~a-------h~apv~~~~f~~~d~t~l~s~sDd------~v~k 136 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESG----HVKVFDMKSRVILRQLYA-------HQAPVHVTKFSPQDNTMLVSGSDD------KVVK 136 (487)
T ss_pred EEeecCCeEEEccCCcC----cEEEeccccHHHHHHHhh-------ccCceeEEEecccCCeEEEecCCC------ceEE
Confidence 444 4788999 64433 478999555222222222 224444443 45888999987743 3588
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
.||..+..+.-+.... -.--|+++. ...+++|++-|||||....=|.|+.. +|+ .+ ++..-.
T Consensus 137 ~~d~s~a~v~~~l~~h--tDYVR~g~~------~~~~~hivvtGsYDg~vrl~DtR~~~--~~v--~e----lnhg~p-- 198 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGH--TDYVRCGDI------SPANDHIVVTGSYDGKVRLWDTRSLT--SRV--VE----LNHGCP-- 198 (487)
T ss_pred EEEcCCcEEEEEecCC--cceeEeecc------ccCCCeEEEecCCCceEEEEEeccCC--cee--EE----ecCCCc--
Confidence 8999888854455544 577788886 55699999999999886655667643 343 33 332222
Q ss_pred CCcCeEEEEECCEEEEe-cCCeEEEeecc
Q 012060 381 NGENKLIHCYKNQVFVG-RGGSLEVWSRV 408 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~-~g~~~~v~~~~ 408 (472)
....++.-.|+++++ +|-+|-||.=.
T Consensus 199 --Ve~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 199 --VESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred --eeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 567777777788877 55689999764
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.072 Score=55.86 Aligned_cols=81 Identities=7% Similarity=0.082 Sum_probs=55.0
Q ss_pred ccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC---CCcCcccceeEEEEe-CCeEEE-EecCC
Q 012060 164 VRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS---DPRIYRATVTAIADS-PTTVFS-SLVCP 238 (472)
Q Consensus 164 ~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a---~m~~~R~~~~ava~l-~g~IYA-Gg~~~ 238 (472)
++..+.+ ..++.++|++||. .+.....+.+.+||+.+++|...+ ..+.+|.+++ ++++ ++.|++ ++ ++
T Consensus 24 ~~~~~ta----v~igdk~yv~GG~-~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhS-a~v~~~~rilv~~~-~~ 96 (398)
T PLN02772 24 PKNRETS----VTIGDKTYVIGGN-HEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYS-AVVLNKDRILVIKK-GS 96 (398)
T ss_pred CCCccee----EEECCEEEEEccc-CCCccccceEEEEECCCCcEecccccCCCCCCCCcce-EEEECCceEEEEeC-CC
Confidence 4555533 3489999999994 233236789999999999999865 5677899997 5655 678988 32 12
Q ss_pred CCCceeEEEeCCC
Q 012060 239 HKENSVLLIDKST 251 (472)
Q Consensus 239 ~~l~sVE~YDp~t 251 (472)
..-.++.---..|
T Consensus 97 ~~~~~~w~l~~~t 109 (398)
T PLN02772 97 APDDSIWFLEVDT 109 (398)
T ss_pred CCccceEEEEcCC
Confidence 2234555444444
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.6 Score=48.36 Aligned_cols=235 Identities=13% Similarity=0.056 Sum_probs=114.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+...+.|+ ++| ++..||..+.+- +.........+.+++.. ++.+++ |+.+ .+|-.||..+.+.+
T Consensus 545 ~~~las~~--~Dg-----~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D----g~v~iWd~~~~~~~ 611 (793)
T PLN00181 545 KSQVASSN--FEG-----VVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD----GSVKLWSINQGVSI 611 (793)
T ss_pred CCEEEEEe--CCC-----eEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC----CEEEEEECCCCcEE
Confidence 45566666 555 455667655432 22222222223235553 455666 6544 46889999884433
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee-eeEEcCCCCCCCCcccccccceeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV-VWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~-vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
..+.. ........+..-++.++++|+.+ ++|..||.++.+. .-+.... ...+.+ +.
T Consensus 612 ~~~~~-------~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h--------~~~V~~--v~ 668 (793)
T PLN00181 612 GTIKT-------KANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGH--------SKTVSY--VR 668 (793)
T ss_pred EEEec-------CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCC--------CCCEEE--EE
Confidence 22211 00112233434567788877643 4799999988652 1222222 111211 22
Q ss_pred ecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccc
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREG 411 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~ 411 (472)
..++..++.|+.|+.+..-|++.-. ...|..+.. ...... ...+......++++++++ +.|-+|......
T Consensus 669 f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~----~~gh~~---~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 669 FVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS----FMGHTN---VKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EeCCCEEEEEECCCEEEEEeCCCCccccCCcceEE----EcCCCC---CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 3356677788888765544554322 223444432 111110 011111233456666654 899999853210
Q ss_pred cccccCCcceeec----cccccccCCCCceEEEeecCc-eEEEeeeccceeEEee
Q 012060 412 RNRSCSEGLFRRN----FVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 412 ~~~~~~~~~~r~~----~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
.+ ..++.+ ..+...+.....|.++.+-++ .++++=.+..-|.|||
T Consensus 742 ---~~--~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 742 ---PV--LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ---ce--EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 00 000100 001111233456888876433 4555656667799997
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=4.6 Score=40.73 Aligned_cols=209 Identities=11% Similarity=0.107 Sum_probs=102.6
Q ss_pred EEEe--CCeEEEEecCCCCCceeEEEeCCCccccc-ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 224 IADS--PTTVFSSLVCPHKENSVLLIDKSTLQISS-EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 224 va~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~-~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
++.. +..||++.+. .++|-+||..++..+. .+.. ......|......+-...||++.. ..+.|.
T Consensus 85 i~~~~~g~~l~v~~~~---~~~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~ 151 (330)
T PRK11028 85 ISTDHQGRFLFSASYN---ANCVSVSPLDKDGIPVAPIQI----IEGLEGCHSANIDPDNRTLWVPCL------KEDRIR 151 (330)
T ss_pred EEECCCCCEEEEEEcC---CCeEEEEEECCCCCCCCceee----ccCCCcccEeEeCCCCCEEEEeeC------CCCEEE
Confidence 5555 3359985433 3577788886532110 0000 000011222223344567888643 245899
Q ss_pred EEcCCCCeeeeE------Ec-CCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEe---ecCC
Q 012060 301 MWDPRSGEVVWE------TN-EPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYM---EDKN 370 (472)
Q Consensus 301 ~yDp~~~~~vW~------~~-~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~---~~~~ 370 (472)
.||..++.. -. .. ++ ...+| .++..-.+..+|++...++.+..-|++.- +++.+.+ ...+
T Consensus 152 v~d~~~~g~-l~~~~~~~~~~~~--g~~p~------~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p 221 (330)
T PRK11028 152 LFTLSDDGH-LVAQEPAEVTTVE--GAGPR------HMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMP 221 (330)
T ss_pred EEEECCCCc-ccccCCCceecCC--CCCCc------eEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCC
Confidence 999877431 11 11 12 12233 23346667789998776665544344311 2233333 2211
Q ss_pred CCcccCCCCCCCcCeEEEE--ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCce
Q 012060 371 PSMISSSGNNNGENKLIHC--YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNR 446 (472)
Q Consensus 371 ~~m~~~~~~~~~~~~~~~~--~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r 446 (472)
..+..++ ....++. -+.+||++. .+.|-||.--.. ....++ +++.+.-....--.+.--|.+
T Consensus 222 ~~~~~~~-----~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~----~~~~~~-----~~~~~~~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 222 ADFSDTR-----WAADIHITPDGRHLYACDRTASLISVFSVSED----GSVLSF-----EGHQPTETQPRGFNIDHSGKY 287 (330)
T ss_pred CcCCCCc-----cceeEEECCCCCEEEEecCCCCeEEEEEEeCC----CCeEEE-----eEEEeccccCCceEECCCCCE
Confidence 1112222 1223332 234799983 378999865211 001111 112111111111246667999
Q ss_pred EEEeeeccceeEEeecCCCCcce
Q 012060 447 LFVSREDVEGIEVWESSNLSGVV 469 (472)
Q Consensus 447 ~f~~~~~~~~~~vw~~~~~~~~~ 469 (472)
|||+-...+.|.||+-....|.+
T Consensus 288 l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 288 LIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEEEccCCcEEEEEEcCCCCcE
Confidence 99998878899999876555544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.7 Score=44.63 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=66.1
Q ss_pred cccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCc-----cccCCCCcCcccceeEEEEeC--CeEEE-Eec
Q 012060 167 HLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAH-----WTDPSDPRIYRATVTAIADSP--TTVFS-SLV 236 (472)
Q Consensus 167 ~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~-----W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~ 236 (472)
+-+.+.++++- ++.+++.|+ .+| ++..||..+.. ...+..+......+.+++... +.+.| |+.
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS--~Dg-----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTAS--EDG-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe--CCC-----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 33445455543 456777777 455 34445543321 111222222222333345442 34555 654
Q ss_pred CCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 237 CPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 237 ~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
+ .+|-.||..+.+++..+... .-.-..+.|.+ ++.++++|+. .+.|..||+++++++.+....
T Consensus 147 D----gtVrIWDl~tg~~~~~l~~h------~~~V~sla~sp-dG~lLatgs~------Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 147 D----MVVNVWDVERGKAVEVIKCH------SDQITSLEWNL-DGSLLCTTSK------DKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred C----CEEEEEECCCCeEEEEEcCC------CCceEEEEEEC-CCCEEEEecC------CCEEEEEECCCCcEEEEEecC
Confidence 4 47889999986544333210 00112344544 5666676663 347999999999977776554
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.019 Score=60.80 Aligned_cols=164 Identities=9% Similarity=0.007 Sum_probs=106.4
Q ss_pred CCccccccccceeeeeC--CeEEEEcCcCCCCceecceeeeecCCCCccccCCC---CcCcccceeEEEEe--CCeEEE-
Q 012060 162 VTVRTHLDNITSIRHVW--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD---PRIYRATVTAIADS--PTTVFS- 233 (472)
Q Consensus 162 ~~~R~~~~~v~~v~~l~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~---m~~~R~~~~ava~l--~g~IYA- 233 (472)
+..|.+|..+ ..+ +.||.-|| .+|...+...+.|....++|+.+.- -+-+|+.+- .+.- ..+||-
T Consensus 258 p~~RgGHQMV----~~~~~~CiYLYGG--WdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR-MVid~S~~KLYLl 330 (723)
T KOG2437|consen 258 PGMRGGHQMV----IDVQTECVYLYGG--WDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR-MVIDISRRKLYLL 330 (723)
T ss_pred ccccCcceEE----EeCCCcEEEEecC--cccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh-hhhhhhHhHHhhh
Confidence 4457777543 344 49999999 9999999999999999999998642 445566553 3322 237998
Q ss_pred EecCC-CC------CceeEEEeCCCcccccccccccCCCcccccccce-----------e--EEecCCeEEEEEEeCCCc
Q 012060 234 SLVCP-HK------ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL-----------T--WIPATGVVLGSAIAWGAF 293 (472)
Q Consensus 234 Gg~~~-~~------l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~-----------~--~~~~~g~Lyv~Gg~~g~~ 293 (472)
|-+-+ ++ -+-+.+||..| +.|....--.. + ...-.+.|||.||..-.-
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~------------~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~ 398 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDT------------NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTC 398 (723)
T ss_pred hhccccccccccccccceEEEecCC------------ceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccC
Confidence 75433 11 34678899888 44876532111 1 112556799999853321
Q ss_pred c--ccceEEEEcCCCCeeeeEEcCCCC--------CCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 294 G--YSGYVRMWDPRSGEVVWETNEPGS--------GRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 294 ~--~~~sve~yDp~~~~~vW~~~~~~~--------~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
. ..+-+..||-.... |+..+.-. -...|-|||+ .....+.++|+.||+...
T Consensus 399 ~e~~f~GLYaf~~~~~~--w~~l~e~~~~~~~vvE~~~sR~ghcm---E~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 399 NEPQFSGLYAFNCQCQT--WKLLREDSCNAGPVVEDIQSRIGHCM---EFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred CCccccceEEEecCCcc--HHHHHHHHhhcCcchhHHHHHHHHHH---HhcCCCCeEEeccCcccc
Confidence 1 23456677766655 87664310 1456788885 556789999999996643
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.4 Score=38.24 Aligned_cols=185 Identities=16% Similarity=0.268 Sum_probs=89.8
Q ss_pred EEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
+.... +.+++ ++. ...+-.||+.+.++...+... ........+.+. +.++++|.. .+.|..
T Consensus 99 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~------~~~i~i 161 (289)
T cd00200 99 VAFSPDGRILSSSSR----DKTIKVWDVETGKCLTTLRGH------TDWVNSVAFSPD-GTFVASSSQ------DGTIKL 161 (289)
T ss_pred EEEcCCCCEEEEecC----CCeEEEEECCCcEEEEEeccC------CCcEEEEEEcCc-CCEEEEEcC------CCcEEE
Confidence 44444 34555 432 346889999875533333210 001122233333 455554432 346999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNN 381 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~ 381 (472)
||.++++.+...... ...+..++... ++..+++|+.++....-|++. ...+.. ......
T Consensus 162 ~d~~~~~~~~~~~~~--------~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~-----~~~~~~----~~~~~~--- 220 (289)
T cd00200 162 WDLRTGKCVATLTGH--------TGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST-----GKCLGT----LRGHEN--- 220 (289)
T ss_pred EEccccccceeEecC--------ccccceEEECC-CcCEEEEecCCCcEEEEECCC-----Cceecc----hhhcCC---
Confidence 999988755555433 11121222233 343455666566544333332 222222 101110
Q ss_pred CcCeEEEEEC-CEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeecccee
Q 012060 382 GENKLIHCYK-NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGI 457 (472)
Q Consensus 382 ~~~~~~~~~~-g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~ 457 (472)
.-..++... ++++++. .+.|.+|+-... +..+. +- ...+.|..+++-.+ +++++=.+...+
T Consensus 221 -~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~--------~~~~~-~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 221 -GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--------ECVQT-LS-----GHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred -ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc--------eeEEE-cc-----ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 122233333 5666665 689999986421 11111 11 12346888888775 555665666678
Q ss_pred EEee
Q 012060 458 EVWE 461 (472)
Q Consensus 458 ~vw~ 461 (472)
.||+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 8985
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.077 Score=37.42 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=29.2
Q ss_pred cCcccceeEEEEeCCeEEE-EecCC---CCCceeEEEeCCC
Q 012060 215 RIYRATVTAIADSPTTVFS-SLVCP---HKENSVLLIDKST 251 (472)
Q Consensus 215 ~~~R~~~~ava~l~g~IYA-Gg~~~---~~l~sVE~YDp~t 251 (472)
+.+|..++ +++.+++||+ ||..+ ...+.+-+||..+
T Consensus 2 P~~R~~hs-~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHS-AVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceE-EEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 45789986 8889999999 98873 3488999999876
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.043 Score=58.27 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=73.8
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC-CCCCcccccccceeeeecC--CeEEEEcccCCCcccc--
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS-GRSARFGDSFADVDVDVDE--LTLFKICSKSGDIAMA-- 353 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~-~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~~~~~-- 353 (472)
-+++||.=||.+|.. .+..-..|....|. |+..-... ..-+|..|.| +..- .+||..|-+-+.....
T Consensus 271 ~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~--W~~iN~~t~~PG~RsCHRM-----Vid~S~~KLYLlG~Y~~sS~r~~~ 342 (723)
T KOG2437|consen 271 QTECVYLYGGWDGTQ-DLADFWAYSVKENQ--WTCINRDTEGPGARSCHRM-----VIDISRRKLYLLGRYLDSSVRNSK 342 (723)
T ss_pred CCcEEEEecCcccch-hHHHHHhhcCCcce--eEEeecCCCCCcchhhhhh-----hhhhhHhHHhhhhhcccccccccc
Confidence 567999999999976 56678889999999 99987643 4567888886 3334 4999999766543211
Q ss_pred ccccc------CCCCcEEeecCCCCcccCCCC--CCCcCeEEEEECCE--EEEecC
Q 012060 354 DLRNL------GEDPWVYMEDKNPSMISSSGN--NNGENKLIHCYKNQ--VFVGRG 399 (472)
Q Consensus 354 dl~s~------e~d~W~~~~~~~~~m~~~~~~--~~~~~~~~~~~~g~--l~~~~g 399 (472)
++|+= .++.|++++ |.....| .++...+.++-+.+ |||.||
T Consensus 343 s~RsDfW~FDi~~~~W~~ls-----~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 343 SLRSDFWRFDIDTNTWMLLS-----EDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred ccccceEEEecCCceeEEec-----ccccccCCcceeecceeeEecCcceEEEecC
Confidence 22221 167788887 5555332 33445556666666 899888
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=5.8 Score=43.93 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=40.8
Q ss_pred eEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 230 TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 230 ~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.|+| ++.+ .+|-.||..+.+.+..+.. . .....+.|.+ +|.++++++. .+.|..|||++++
T Consensus 139 ~iLaSgS~D----gtIrIWDl~tg~~~~~i~~---~----~~V~Slswsp-dG~lLat~s~------D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD----SFVNIWDIENEKRAFQINM---P----KKLSSLKWNI-KGNLLSGTCV------GKHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC----CeEEEEECCCCcEEEEEec---C----CcEEEEEECC-CCCEEEEEec------CCEEEEEECCCCc
Confidence 4666 5444 4788999998553333221 0 0112333443 5666676653 3479999999998
Q ss_pred eeeEEcCC
Q 012060 309 VVWETNEP 316 (472)
Q Consensus 309 ~vW~~~~~ 316 (472)
++=+....
T Consensus 201 ~i~tl~gH 208 (568)
T PTZ00420 201 IASSFHIH 208 (568)
T ss_pred EEEEEecc
Confidence 76555444
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.18 Score=52.97 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=49.3
Q ss_pred EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-CCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 277 IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-GSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 277 ~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
...+.++|+.||.+......+.|.+||+.|++ |..-.- +....+|.||+. +.+.+++|+++++-+
T Consensus 31 v~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~--W~~P~V~G~~P~~r~GhSa----~v~~~~rilv~~~~~ 96 (398)
T PLN02772 31 VTIGDKTYVIGGNHEGNTLSIGVQILDKITNN--WVSPIVLGTGPKPCKGYSA----VVLNKDRILVIKKGS 96 (398)
T ss_pred EEECCEEEEEcccCCCccccceEEEEECCCCc--EecccccCCCCCCCCcceE----EEECCceEEEEeCCC
Confidence 34789999988754432145799999999999 877654 555789999995 445589999999744
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.19 Score=49.50 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=81.3
Q ss_pred EEeCCCcccccccccccCCCcccccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCC----CeeeeEEcCC
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRS----GEVVWETNEP 316 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~----~~~vW~~~~~ 316 (472)
.|||.|++ ++.+....-.++. -+|.|...||+... ...++.|+|-+ .. |.....
T Consensus 50 ~yD~~tn~------------~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~--w~e~~~ 112 (243)
T PF07250_consen 50 EYDPNTNT------------FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCD--WTESPN 112 (243)
T ss_pred EEecCCCc------------EEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCC--ceECcc
Confidence 69999944 5554443333332 68888898887442 35799999986 34 877765
Q ss_pred CCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEE
Q 012060 317 GSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQV 394 (472)
Q Consensus 317 ~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l 394 (472)
. |..+|..... ...-+|++++|||....... -+-... ......+.-+.. .......--++-+++ =+|+|
T Consensus 113 ~-m~~~RWYpT~----~~L~DG~vlIvGG~~~~t~E-~~P~~~~~~~~~~~~~l~~---~~~~~~~nlYP~~~llPdG~l 183 (243)
T PF07250_consen 113 D-MQSGRWYPTA----TTLPDGRVLIVGGSNNPTYE-FWPPKGPGPGPVTLPFLSQ---TSDTLPNNLYPFVHLLPDGNL 183 (243)
T ss_pred c-ccCCCccccc----eECCCCCEEEEeCcCCCccc-ccCCccCCCCceeeecchh---hhccCccccCceEEEcCCCCE
Confidence 3 7999999986 66678999999997632110 000000 111112211000 000111225777764 47899
Q ss_pred EEecCCeEEEeecc
Q 012060 395 FVGRGGSLEVWSRV 408 (472)
Q Consensus 395 ~~~~g~~~~v~~~~ 408 (472)
|+..+..-.+|+..
T Consensus 184 Fi~an~~s~i~d~~ 197 (243)
T PF07250_consen 184 FIFANRGSIIYDYK 197 (243)
T ss_pred EEEEcCCcEEEeCC
Confidence 99988777777654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=93.47 E-value=7 Score=36.90 Aligned_cols=188 Identities=19% Similarity=0.225 Sum_probs=98.9
Q ss_pred eCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc--ceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 227 SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG--KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 227 l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m--~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
.++.||++.. ...+-+||+.| |+ -.|+.-.+- ...-...++.||+... .+.+.++|.
T Consensus 35 ~~~~v~~~~~----~~~l~~~d~~t-------G~---~~W~~~~~~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASG----DGNLYALDAKT-------GK---VLWRFDLPGPISGAPVVDGGRVYVGTS-------DGSLYALDA 93 (238)
T ss_dssp ETTEEEEEET----TSEEEEEETTT-------SE---EEEEEECSSCGGSGEEEETTEEEEEET-------TSEEEEEET
T ss_pred eCCEEEEEcC----CCEEEEEECCC-------CC---EEEEeeccccccceeeecccccccccc-------eeeeEeccc
Confidence 7888999521 34678999999 44 347665431 1222557899988752 238999999
Q ss_pred CCCeeeeEE-cCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC-CCCCCC
Q 012060 305 RSGEVVWET-NEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS-SGNNNG 382 (472)
Q Consensus 305 ~~~~~vW~~-~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~-~~~~~~ 382 (472)
+++++.|+. .... ...+ .....+..+.++.+|+.+. ++.+...|+++ +.-.|.+-...++....- .. ..
T Consensus 94 ~tG~~~W~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~--~~ 164 (238)
T PF13360_consen 94 KTGKVLWSIYLTSS--PPAG---VRSSSSPAVDGDRLYVGTS-SGKLVALDPKT-GKLLWKYPVGEPRGSSPISSF--SD 164 (238)
T ss_dssp TTSCEEEEEEE-SS--CTCS---TB--SEEEEETTEEEEEET-CSEEEEEETTT-TEEEEEEESSTT-SS--EEEE--TT
T ss_pred CCcceeeeeccccc--cccc---cccccCceEecCEEEEEec-cCcEEEEecCC-CcEEEEeecCCCCCCcceeee--cc
Confidence 999999994 4331 1111 1111223555777765543 44444333332 123466643321110000 00 00
Q ss_pred cCeEEEEECCEEEEecCCe--EEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEe
Q 012060 383 ENKLIHCYKNQVFVGRGGS--LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVW 460 (472)
Q Consensus 383 ~~~~~~~~~g~l~~~~g~~--~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw 460 (472)
....+...++.||++.+.. +.+ +- .. .+.+.+++ ..+.......=|+.||+.. ....+-.|
T Consensus 165 ~~~~~~~~~~~v~~~~~~g~~~~~-d~-~t------g~~~w~~~--------~~~~~~~~~~~~~~l~~~~-~~~~l~~~ 227 (238)
T PF13360_consen 165 INGSPVISDGRVYVSSGDGRVVAV-DL-AT------GEKLWSKP--------ISGIYSLPSVDGGTLYVTS-SDGRLYAL 227 (238)
T ss_dssp EEEEEECCTTEEEEECCTSSEEEE-ET-TT------TEEEEEEC--------SS-ECECEECCCTEEEEEE-TTTEEEEE
T ss_pred cccceEEECCEEEEEcCCCeEEEE-EC-CC------CCEEEEec--------CCCccCCceeeCCEEEEEe-CCCEEEEE
Confidence 1344555678999998755 333 11 11 12223331 2223333677789999888 44556566
Q ss_pred e
Q 012060 461 E 461 (472)
Q Consensus 461 ~ 461 (472)
+
T Consensus 228 d 228 (238)
T PF13360_consen 228 D 228 (238)
T ss_dssp E
T ss_pred E
Confidence 5
|
... |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=6 Score=45.44 Aligned_cols=149 Identities=14% Similarity=0.203 Sum_probs=83.0
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.+..+.+.++|+. .++|.+||..+++.+.+.... ...+-+++....++.+++.|+.++....-
T Consensus 538 l~~~~~~~~~las~~~------Dg~v~lWd~~~~~~~~~~~~H--------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 538 ICWNSYIKSQVASSNF------EGVVQVWDVARSQLVTEMKEH--------EKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred EEeccCCCCEEEEEeC------CCeEEEEECCCCeEEEEecCC--------CCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 4455555556666664 347999999999877666543 12222222333467888899988765543
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEecC--CeEEEeeccccccccccCCcceeecccccc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRV 429 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~ 429 (472)
|++. ...+.. +.... .-..+.. .+|.++++++ +.|.+|+--.. ...+ ..+.+
T Consensus 604 d~~~-----~~~~~~----~~~~~-----~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~------~~~~--~~~~~-- 659 (793)
T PLN00181 604 SINQ-----GVSIGT----IKTKA-----NICCVQFPSESGRSLAFGSADHKVYYYDLRNP------KLPL--CTMIG-- 659 (793)
T ss_pred ECCC-----CcEEEE----EecCC-----CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------Cccc--eEecC--
Confidence 4432 223322 11111 1112222 2466666654 78999985311 0001 11112
Q ss_pred ccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 430 EDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 430 ~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..+.|+.+.|--+..+++=.....|-+|+..
T Consensus 660 ---h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 660 ---HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ---CCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 3456888888655667777777779999865
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.2 Score=43.97 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=70.4
Q ss_pred eeCCeEEEEcCcCCCCceecceeeeecCC----CCccccCC-CCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeC
Q 012060 176 HVWSDVAAVGSDYSSGIHFYDLSSSRHVA----SAHWTDPS-DPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDK 249 (472)
Q Consensus 176 ~l~~~lYavGG~~~~g~~~l~sve~ydp~----t~~W~~~a-~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp 249 (472)
.-||.+..+||. .+|.. .+-.|+|. +..|.... .|..+|-+..+..--||.+++ ||.. ..+.|.|++
T Consensus 75 L~dG~ll~tGG~-~~G~~---~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~---~~t~E~~P~ 147 (243)
T PF07250_consen 75 LPDGRLLQTGGD-NDGNK---AIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN---NPTYEFWPP 147 (243)
T ss_pred CCCCCEEEeCCC-Ccccc---ceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC---CCcccccCC
Confidence 358999999994 34443 33345554 36798765 699999998734444678888 8765 456787766
Q ss_pred CCcccccccccccCCCcccccccc---------eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC
Q 012060 250 STLQISSEIGRQSGASSKNMAVGK---------LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG 317 (472)
Q Consensus 250 ~t~~~~~~~~~~~~~~W~~v~~m~---------~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~ 317 (472)
.... ...-.|...+... .-++.-+|.||+.+. ..-..||+.++++ ....+.+
T Consensus 148 ~~~~-------~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--------~~s~i~d~~~n~v-~~~lP~l 208 (243)
T PF07250_consen 148 KGPG-------PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--------RGSIIYDYKTNTV-VRTLPDL 208 (243)
T ss_pred ccCC-------CCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--------CCcEEEeCCCCeE-EeeCCCC
Confidence 4411 0001122222111 113336788888654 3567899999982 2444454
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=3 Score=44.35 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc--CcccceeEEEEeCC-eEEE--
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR--IYRATVTAIADSPT-TVFS-- 233 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~--~~R~~~~ava~l~g-~IYA-- 233 (472)
.+....|+.- +.-.++.+.+.|| |+| ++-.||.++.+ ..+..++ .|-.. +.++.+ .+.|
T Consensus 151 ~htDYVR~g~-----~~~~~~hivvtGs--YDg-----~vrl~DtR~~~-~~v~elnhg~pVe~---vl~lpsgs~iasA 214 (487)
T KOG0310|consen 151 GHTDYVRCGD-----ISPANDHIVVTGS--YDG-----KVRLWDTRSLT-SRVVELNHGCPVES---VLALPSGSLIASA 214 (487)
T ss_pred CCcceeEeec-----cccCCCeEEEecC--CCc-----eEEEEEeccCC-ceeEEecCCCceee---EEEcCCCCEEEEc
Confidence 4555566652 2235778999999 888 56678877773 2223322 12122 444443 6666
Q ss_pred EecCCCCCceeEEEeCCCccccccccccc----CCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 234 SLVCPHKENSVLLIDKSTLQISSEIGRQS----GASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 234 Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~----~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
| -|+|-+||..+ |.|- .|.-+.+..|.+. .-.-.|+. |+ ..+.|..||..+=++
T Consensus 215 g------Gn~vkVWDl~~-------G~qll~~~~~H~KtVTcL~l~--s~~~rLlS-~s------LD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 215 G------GNSVKVWDLTT-------GGQLLTSMFNHNKTVTCLRLA--SDSTRLLS-GS------LDRHVKVFDTTNYKV 272 (487)
T ss_pred C------CCeEEEEEecC-------CceehhhhhcccceEEEEEee--cCCceEee-cc------cccceEEEEccceEE
Confidence 3 36899999997 4433 1233444443222 22345544 34 245799999555566
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
|-+|.=| -++.|++++. ++.--++|..+|-+.
T Consensus 273 v~s~~~~---------~pvLsiavs~-dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 273 VHSWKYP---------GPVLSIAVSP-DDQTVVIGMSNGLVS 304 (487)
T ss_pred EEeeecc---------cceeeEEecC-CCceEEEecccceee
Confidence 6333333 2245667777 445555898887654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=91.88 E-value=17 Score=37.33 Aligned_cols=260 Identities=14% Similarity=0.118 Sum_probs=128.5
Q ss_pred eCCeEEEEcCcCCCCceecceeeee--cCCCCccccCCCCcCcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSR--HVASAHWTDPSDPRIYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~y--dp~t~~W~~~a~m~~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
-++.||++.. .. ..-..+..| ++.+.+.+.+............++. -+.+||+..+. ..+|.+|+...+
T Consensus 47 ~~~~LY~~~e--~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~---~g~v~v~~l~~~ 119 (345)
T PF10282_consen 47 DGRRLYVVNE--GS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG---GGSVSVFPLDDD 119 (345)
T ss_dssp TSSEEEEEET--TS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT---TTEEEEEEECTT
T ss_pred CCCEEEEEEc--cc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc---CCeEEEEEccCC
Confidence 3567888865 21 011233444 4443455555443321222111444 34568885444 346778887763
Q ss_pred cccccc-cc--ccC---CCcccccccc--eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe--e---eeEEcCCCCC
Q 012060 253 QISSEI-GR--QSG---ASSKNMAVGK--LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE--V---VWETNEPGSG 319 (472)
Q Consensus 253 ~~~~~~-~~--~~~---~~W~~v~~m~--~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~--~---vW~~~~~~~~ 319 (472)
-.+.+. .. ..+ +.-....+-. ....+-++.+||.-- | .+.|..|+...+. . ..-..++ .
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--G----~D~v~~~~~~~~~~~l~~~~~~~~~~--G 191 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--G----ADRVYVYDIDDDTGKLTPVDSIKVPP--G 191 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--T----TTEEEEEEE-TTS-TEEEEEEEECST--T
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--C----CCEEEEEEEeCCCceEEEeecccccc--C
Confidence 211111 00 000 0000001111 112235567888632 3 2467777766554 1 1222333 2
Q ss_pred CCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEe
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVG 397 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~ 397 (472)
.-+|-.. ....+..+|+++-.++.+...++.. ++..++.+..... +...-. .+.....|++. +..||++
T Consensus 192 ~GPRh~~------f~pdg~~~Yv~~e~s~~v~v~~~~~-~~g~~~~~~~~~~-~~~~~~-~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 192 SGPRHLA------FSPDGKYAYVVNELSNTVSVFDYDP-SDGSLTEIQTIST-LPEGFT-GENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp SSEEEEE------E-TTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEES-CETTSC-SSSSEEEEEE-TTSSEEEEE
T ss_pred CCCcEEE------EcCCcCEEEEecCCCCcEEEEeecc-cCCceeEEEEeee-cccccc-ccCCceeEEEecCCCEEEEE
Confidence 4455433 3666789999998776655433331 1333433321000 111111 11246677777 6689998
Q ss_pred c-C-CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCCCcceE
Q 012060 398 R-G-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNLSGVVC 470 (472)
Q Consensus 398 ~-g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~~~~~~ 470 (472)
- + ++|-+|.--.. +.++-+ ++..+ .+|..-.+|++ -|++|+|+-.+.+.|.|++-..-.|.+.
T Consensus 263 nr~~~sI~vf~~d~~------~g~l~~---~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 263 NRGSNSISVFDLDPA------TGTLTL---VQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ECTTTEEEEEEECTT------TTTEEE---EEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred eccCCEEEEEEEecC------CCceEE---EEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 3 3 78988876321 122211 22211 23334778888 9999999999999999998766666654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=22 Score=38.67 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.+..+.++++|+.+ ++|.+||.++++.+=+.... ...+.+++... ++.+++.|+.|+.+..-
T Consensus 131 l~f~P~~~~iLaSgs~D------gtVrIWDl~tg~~~~~l~~h--------~~~V~sla~sp-dG~lLatgs~Dg~IrIw 195 (493)
T PTZ00421 131 VSFHPSAMNVLASAGAD------MVVNVWDVERGKAVEVIKCH--------SDQITSLEWNL-DGSLLCTTSKDKKLNII 195 (493)
T ss_pred EEeCcCCCCEEEEEeCC------CEEEEEECCCCeEEEEEcCC--------CCceEEEEEEC-CCCEEEEecCCCEEEEE
Confidence 34445445566776643 47999999998744333322 12232333333 67788899988876655
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EE-CCEEEEec-----CCeEEEeeccccccccccCCcceeeccc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CY-KNQVFVGR-----GGSLEVWSRVREGRNRSCSEGLFRRNFV 426 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~-~g~l~~~~-----g~~~~v~~~~~~~~~~~~~~~~~r~~~~ 426 (472)
|+++-+ .-..+.. ... . ....+. .. ++.|+.++ .+.|.+|.--.. .+.+ ...-.
T Consensus 196 D~rsg~--~v~tl~~-------H~~-~--~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~------~~p~-~~~~~ 256 (493)
T PTZ00421 196 DPRDGT--IVSSVEA-------HAS-A--KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM------ASPY-STVDL 256 (493)
T ss_pred ECCCCc--EEEEEec-------CCC-C--cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC------CCce-eEecc
Confidence 665422 1111111 110 0 011122 22 34555544 367999985322 1111 11001
Q ss_pred cccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 427 DRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 427 ~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
+ .+..-.+..+...|+.|++.=+....|-+||...
T Consensus 257 d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 257 D---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred C---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 1 1112123446667888888876666788898653
|
|
| >KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.29 Score=41.12 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCE-EEcCChhhHHHHhhcc-----ccCc-ccCC
Q 012060 14 NGDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPI-FIDRDPDVFSVLLSLL-----RSNR-LPST 81 (472)
Q Consensus 14 ~~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~v-fiDrdp~~F~~IL~fl-----rtg~-l~~~ 81 (472)
.++-|+|.- +|+.|...|..-.- |.-+++|+++. +.+.+++ |-|.+..+++.+..|+ |++. ..++
T Consensus 15 ~~~yVkLvS~Ddhefiikre~Amt---SgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiP 91 (112)
T KOG3473|consen 15 DSMYVKLVSSDDHEFIIKREHAMT---SGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIP 91 (112)
T ss_pred chhheEeecCCCcEEEEeehhhhh---hhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCC
Confidence 456788865 56899999887555 56899999853 4566677 5599999999999998 4443 2222
Q ss_pred C---CCcchHHHHhhhhhcC
Q 012060 82 A---SRFSKQELADEALYYG 98 (472)
Q Consensus 82 ~---~~~~v~~Ll~eA~~~q 98 (472)
+ ..+-..+||-+|+|+.
T Consensus 92 eF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 92 EFDIPPEMALELLMAANYLE 111 (112)
T ss_pred CCCCCHHHHHHHHHHhhhhc
Confidence 2 1144678999999874
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.95 E-value=15 Score=40.22 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=44.2
Q ss_pred cCCeEEEEEEeCCCc---------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee--cCCe---EEEEc
Q 012060 279 ATGVVLGSAIAWGAF---------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV--DELT---LFKIC 344 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~---------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~--~~~~---iy~vG 344 (472)
-.|+||+..|.-.+. -+.++|-..|++|++.+|....-. ..---.+..+...... .+++ +.+.+
T Consensus 244 ~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~--~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~ 321 (527)
T TIGR03075 244 ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP--HDEWDYDGVNEMILFDLKKDGKPRKLLAHA 321 (527)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC--CCCccccCCCCcEEEEeccCCcEEEEEEEe
Confidence 578999977652221 146799999999999999988641 1111122211111222 2444 77777
Q ss_pred ccCCCccccc
Q 012060 345 SKSGDIAMAD 354 (472)
Q Consensus 345 g~~g~~~~~d 354 (472)
.++|..+..|
T Consensus 322 ~K~G~~~vlD 331 (527)
T TIGR03075 322 DRNGFFYVLD 331 (527)
T ss_pred CCCceEEEEE
Confidence 7877666544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.57 E-value=35 Score=38.66 Aligned_cols=168 Identities=22% Similarity=0.252 Sum_probs=92.3
Q ss_pred EEeee----CceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCc-eecceeeeecCCCCccccCCCCcC
Q 012060 144 WIAHG----GQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGI-HFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 144 ~va~G----G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~-~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
++|+| |++-+|+|+. .-.-..-.|+..++++++ -|+.+.|.|+ .+|. ...|+.-+|--.|. .+
T Consensus 321 WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTF--------te 390 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTF--------TE 390 (893)
T ss_pred EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEe--------cc
Confidence 55777 3588899987 332233334444445554 4778999998 4552 23333221111111 11
Q ss_pred cccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEe--cC--CeEEEEEEeC
Q 012060 217 YRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP--AT--GVVLGSAIAW 290 (472)
Q Consensus 217 ~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--~~--g~Lyv~Gg~~ 290 (472)
..+++.|+.+ .+..|+-.- -.-+|-.||... .+ |-=+...|.+.+... .+ |.|..+|..+
T Consensus 391 Hts~Vt~v~f~~~g~~llssS----LDGtVRAwDlkR-------Yr---NfRTft~P~p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSS----LDGTVRAWDLKR-------YR---NFRTFTSPEPIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred CCCceEEEEEEecCCEEEEee----cCCeEEeeeecc-------cc---eeeeecCCCceeeeEEEEcCCCCEEEeeccc
Confidence 2233333333 333344321 123788999988 44 556677776666543 44 7777776643
Q ss_pred CCccccceEEEEcCCCCeeeeEEcCCCCC-CCCcccccccceeeeecCCeEEEEcccCCCc
Q 012060 291 GAFGYSGYVRMWDPRSGEVVWETNEPGSG-RSARFGDSFADVDVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 291 g~~~~~~sve~yDp~~~~~vW~~~~~~~~-~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~ 350 (472)
- =.|-.|+.+|++ ..+-.++ .-|-++.+| .-+++ +-+-|.+|-+.
T Consensus 457 ~-----F~IfvWS~qTGq----llDiLsGHEgPVs~l~f-----~~~~~-~LaS~SWDkTV 502 (893)
T KOG0291|consen 457 S-----FEIFVWSVQTGQ----LLDILSGHEGPVSGLSF-----SPDGS-LLASGSWDKTV 502 (893)
T ss_pred e-----EEEEEEEeecCe----eeehhcCCCCcceeeEE-----ccccC-eEEeccccceE
Confidence 2 279999999999 6655433 234445554 55455 44477777543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.08 E-value=10 Score=39.22 Aligned_cols=219 Identities=17% Similarity=0.212 Sum_probs=120.1
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCcccc-CC-CCcCcccceeEEEEeCCeEEE--EecCCCCCceeEEEeCCCccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD-PS-DPRIYRATVTAIADSPTTVFS--SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~-~a-~m~~~R~~~~ava~l~g~IYA--Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
|.-++.|+ .++ +...+|..+.+-.- ++ ...+.| +|++.+-+=|. .|. -+.|-|||.+.|+.
T Consensus 163 n~wf~tgs--~Dr-----tikIwDlatg~LkltltGhi~~vr----~vavS~rHpYlFs~ge----dk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 163 NEWFATGS--ADR-----TIKIWDLATGQLKLTLTGHIETVR----GVAVSKRHPYLFSAGE----DKQVKCWDLEYNKV 227 (460)
T ss_pred ceeEEecC--CCc-----eeEEEEcccCeEEEeecchhheee----eeeecccCceEEEecC----CCeeEEEechhhhh
Confidence 45566666 332 44566666655322 11 111223 57777766554 443 35799999999774
Q ss_pred cccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 255 SSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 255 ~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
+.+- |+ =+.+ ..+..++....| +.|| ..+.++.||.||...|-.+... -..+++|.+
T Consensus 228 IR~YhGH-----lS~V--~~L~lhPTldvl-~t~g------rDst~RvWDiRtr~~V~~l~GH--------~~~V~~V~~ 285 (460)
T KOG0285|consen 228 IRHYHGH-----LSGV--YCLDLHPTLDVL-VTGG------RDSTIRVWDIRTRASVHVLSGH--------TNPVASVMC 285 (460)
T ss_pred HHHhccc-----ccee--EEEeccccceeE-EecC------CcceEEEeeecccceEEEecCC--------CCcceeEEe
Confidence 4321 11 0000 111112223333 3333 2458999999999877766644 223444444
Q ss_pred eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecC-CeEEEeeccccc
Q 012060 334 DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRG-GSLEVWSRVREG 411 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g-~~~~v~~~~~~~ 411 (472)
-..+..|| -|..|+....=||+.-. +.+.- -+.+++ --.++.+ .-.+|++.+ +.++-|.=
T Consensus 286 ~~~dpqvi-t~S~D~tvrlWDl~agk----t~~tl----t~hkks-----vral~lhP~e~~fASas~dnik~w~~---- 347 (460)
T KOG0285|consen 286 QPTDPQVI-TGSHDSTVRLWDLRAGK----TMITL----THHKKS-----VRALCLHPKENLFASASPDNIKQWKL---- 347 (460)
T ss_pred ecCCCceE-EecCCceEEEeeeccCc----eeEee----ecccce-----eeEEecCCchhhhhccCCccceeccC----
Confidence 55577877 67888765543444211 12221 223331 1112222 236788877 67776644
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeec
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~ 462 (472)
+++.|=.|+-++ .+-|-.+++--|-..|+=.|.-++--|+.
T Consensus 348 -----p~g~f~~nlsgh-----~~iintl~~nsD~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 348 -----PEGEFLQNLSGH-----NAIINTLSVNSDGVLVSGGDNGSIMFWDW 388 (460)
T ss_pred -----Cccchhhccccc-----cceeeeeeeccCceEEEcCCceEEEEEec
Confidence 555555554444 55778888888888888888888777764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=89.49 E-value=21 Score=38.61 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=82.9
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCcccccc-ccceeeeeC-CeEEEEcCcCCCCceecceeeeecCC--CC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVRTHLD-NITSIRHVW-SDVAAVGSDYSSGIHFYDLSSSRHVA--SA 206 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~~~~-~v~~v~~l~-~~lYavGG~~~~g~~~l~sve~ydp~--t~ 206 (472)
++.+|+... |.+.++| |+. ......+.... +...+++.+ +.||+... +| .+-++|+. ..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g-----~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DG-----RLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CC-----eEEEEECCCCCE
Confidence 466774332 5688888 876 33221111110 111223356 77776443 33 44556654 44
Q ss_pred ccccCCCCcC---cccceeEEEEeCCeEEEEecCCC-----CCceeEEEeCCCcccccccccccCCCccccccc------
Q 012060 207 HWTDPSDPRI---YRATVTAIADSPTTVFSSLVCPH-----KENSVLLIDKSTLQISSEIGRQSGASSKNMAVG------ 272 (472)
Q Consensus 207 ~W~~~a~m~~---~R~~~~ava~l~g~IYAGg~~~~-----~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m------ 272 (472)
.|..-..... ..... +.++.++.+|+|..+.. .-..+-++|..| |+ ..|+.-...
T Consensus 133 ~W~~~~~~~~~~~~~i~s-sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-------G~---~~W~~~~~~~~~~~~ 201 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTG-APTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-------GK---LLWRFYTTEPDPNAF 201 (488)
T ss_pred eeeecCCCCcCcceEecC-CCEEECCEEEEeccccccccCCCCcEEEEEECCC-------Cc---eeeEeeccCCCcCCC
Confidence 5776443221 00111 24566788998532221 135788999999 54 446642210
Q ss_pred --------------ce----eEE-ecCCeEEEEEEeCCC-----------ccccceEEEEcCCCCeeeeEEcC
Q 012060 273 --------------KL----TWI-PATGVVLGSAIAWGA-----------FGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 273 --------------~~----~~~-~~~g~Lyv~Gg~~g~-----------~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.. +-+ ...+++|+..+.+.+ ..+.+++-.+|+.+++++|+...
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 00 011 136889997553211 11245899999999999999754
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=89.15 E-value=8.7 Score=36.75 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCC-Cc--c--cccccccCCCCcEE-eecCC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSG-DI--A--MADLRNLGEDPWVY-MEDKN 370 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g-~~--~--~~dl~s~e~d~W~~-~~~~~ 370 (472)
..+|.|+-+++. |....+..........+ +.++|.||=+.-... .. . ..||+ +++|.. +.. +
T Consensus 70 ~~~~Vys~~~~~--Wr~~~~~~~~~~~~~~~------v~~~G~lyw~~~~~~~~~~~~IvsFDl~---~E~f~~~i~~-P 137 (230)
T TIGR01640 70 SEHQVYTLGSNS--WRTIECSPPHHPLKSRG------VCINGVLYYLAYTLKTNPDYFIVSFDVS---SERFKEFIPL-P 137 (230)
T ss_pred ccEEEEEeCCCC--ccccccCCCCccccCCe------EEECCEEEEEEEECCCCCcEEEEEEEcc---cceEeeeeec-C
Confidence 478999999999 99887421111111113 456999998875332 10 1 11332 677884 542 1
Q ss_pred CCcccCCCCCCCcCeEEEEECCEEEEecC----CeEEEeecc
Q 012060 371 PSMISSSGNNNGENKLIHCYKNQVFVGRG----GSLEVWSRV 408 (472)
Q Consensus 371 ~~m~~~~~~~~~~~~~~~~~~g~l~~~~g----~~~~v~~~~ 408 (472)
.... .......|..++|+|-++.. ..+|+|--.
T Consensus 138 ----~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~ 174 (230)
T TIGR01640 138 ----CGNS-DSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLN 174 (230)
T ss_pred ----cccc-ccccceEEEEECCEEEEEEecCCCCcEEEEEEC
Confidence 2111 01125688999999988743 459999653
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.25 Score=50.17 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=64.4
Q ss_pred eEEEEeHHHhhccCCCCccccccCC---CCCCCCCEE--EcCChhhHHHHhhccccCcccCCCCCcchHHHHhhhhhcCc
Q 012060 25 KLFETTLSTIQSGGPDSLLYALSNR---QSDEPNPIF--IDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGI 99 (472)
Q Consensus 25 ~~F~t~r~tLa~~~pssyf~amf~~---~~~~~~~vf--iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~eA~~~ql 99 (472)
+.|.+.+.+|.+. -.||+..... ......++- +--|-.+|+=|++|+....-.+++ .|+-.+|--++|+|+
T Consensus 14 rdF~C~~~lL~~~--M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~--~NvvsIliSS~FL~M 89 (317)
T PF11822_consen 14 RDFTCPRDLLVSE--MRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP--SNVVSILISSEFLQM 89 (317)
T ss_pred eeeeccHHHHHHh--hHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc--CcEEEeEehhhhhcc
Confidence 5699999999996 5799998853 233334443 467889999999999987777766 899999999999999
Q ss_pred chHHhhhc
Q 012060 100 DSQLKSAM 107 (472)
Q Consensus 100 ~~l~~~c~ 107 (472)
++|++.|.
T Consensus 90 ~~Lve~cl 97 (317)
T PF11822_consen 90 ESLVEECL 97 (317)
T ss_pred HHHHHHHH
Confidence 99999886
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >smart00512 Skp1 Found in Skp1 protein family | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.28 Score=41.59 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred EEEE-ECCeEEEEeHHHhhccCCCCccccccCCC--CC-CCCCEEE-cCChhhHHHHhhccccC
Q 012060 18 VKLN-VGGKLFETTLSTIQSGGPDSLLYALSNRQ--SD-EPNPIFI-DRDPDVFSVLLSLLRSN 76 (472)
Q Consensus 18 V~Ln-VGG~~F~t~r~tLa~~~pssyf~amf~~~--~~-~~~~vfi-Drdp~~F~~IL~flrtg 76 (472)
|+|. -+|+.|.+.+..... |..++.|+... .. ...++-+ ++++.+|+.|++|++.-
T Consensus 4 v~L~S~Dg~~f~v~~~~a~~---S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSDGEVFEVEREVARQ---SKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCCCCEEEecHHHHHH---HHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 4453 378999999998877 67889988642 11 1246655 69999999999999653
|
Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.67 E-value=12 Score=38.03 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=57.2
Q ss_pred EEEeCC-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 224 IADSPT-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 224 va~l~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
.+..+. .+|.|+-+ ..|-+||.+|.+ ...||. .-. +......+...|++. +|++ .++|++|
T Consensus 60 c~F~d~~~~~~G~~d----g~vr~~Dln~~~-~~~igt----h~~--~i~ci~~~~~~~~vI-sgsW------D~~ik~w 121 (323)
T KOG1036|consen 60 CAFADESTIVTGGLD----GQVRRYDLNTGN-EDQIGT----HDE--GIRCIEYSYEVGCVI-SGSW------DKTIKFW 121 (323)
T ss_pred eeccCCceEEEeccC----ceEEEEEecCCc-ceeecc----CCC--ceEEEEeeccCCeEE-Eccc------CccEEEE
Confidence 344443 58776544 478899999933 111111 111 111122233456553 4443 3479999
Q ss_pred cCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 303 DPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
|||...++=+...+ ++. -| +.+.+.+-+||..+.....-|||.++
T Consensus 122 D~R~~~~~~~~d~~-----kkV-y~------~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 122 DPRNKVVVGTFDQG-----KKV-YC------MDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccccccccccccC-----ceE-EE------EeccCCEEEEeecCceEEEEEccccc
Confidence 99986533333333 222 22 44466666788877555455898887
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.13 E-value=5.6 Score=43.62 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=67.3
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcC-c-------ccceeEEEEeCCeEEEEecCCCCCce
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRI-Y-------RATVTAIADSPTTVFSSLVCPHKENS 243 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~-~-------R~~~~ava~l~g~IYAGg~~~~~l~s 243 (472)
.++.++.||+... . + .+.++|..+ ..|+.-..... . ...- +++..+++||++..+ ..
T Consensus 65 Pvv~~g~vyv~s~--~-g-----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~~~~v~v~t~d----g~ 131 (527)
T TIGR03075 65 PLVVDGVMYVTTS--Y-S-----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALYDGKVFFGTLD----AR 131 (527)
T ss_pred CEEECCEEEEECC--C-C-----cEEEEECCCCceeeEecCCCCcccccccccccccc-cceEECCEEEEEcCC----CE
Confidence 3457899998665 2 2 244455443 34654321110 0 0112 267778999995332 35
Q ss_pred eEEEeCCCcccccccccccCCCcccccc-cc------eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAV-GK------LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~-m~------~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
+-++|.+| |+ ..|+.-.. .+ -.=...+++||+.... +..+..+.|..||++|++.+|++-.
T Consensus 132 l~ALDa~T-------Gk---~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 132 LVALDAKT-------GK---VVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEECCC-------CC---EEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEeccC
Confidence 77899999 44 44654321 00 0112368888885321 1122357899999999999999664
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=86.65 E-value=30 Score=32.99 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=82.1
Q ss_pred eeeeecCCCCccccCCCCcCccc-----ceeEEEEe---CCe-EEE-EecCC-CCCceeEEEeCCCcccccccccccCCC
Q 012060 197 LSSSRHVASAHWTDPSDPRIYRA-----TVTAIADS---PTT-VFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGAS 265 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~R~-----~~~ava~l---~g~-IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~ 265 (472)
..-.++|.|.+|..++++..++. .+ +++.- +.+ |.. ..... .....+|+|+..+ +.
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~-~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~------------~~ 81 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTY-FLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGS------------NS 81 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceE-EEeecccCCcEEEEEEEeecCCCCCccEEEEEeCC------------CC
Confidence 45688999999999976654211 12 13321 222 333 22211 1245789999998 34
Q ss_pred cccccccce-----e-EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE-EcCCCCCCCCcccccccceeeeecCC
Q 012060 266 SKNMAVGKL-----T-WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE-TNEPGSGRSARFGDSFADVDVDVDEL 338 (472)
Q Consensus 266 W~~v~~m~~-----~-~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~-~~~~~~~~~~R~~~~~~d~~v~~~~~ 338 (472)
|..+.+... . -..++|.||=.+...... ....|-.||.++.+ |. ..+.. . .+... ...+..++++|
T Consensus 82 Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~--f~~~i~~P--~-~~~~~-~~~~~L~~~~G 154 (230)
T TIGR01640 82 WRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSER--FKEFIPLP--C-GNSDS-VDYLSLINYKG 154 (230)
T ss_pred ccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccce--EeeeeecC--c-ccccc-ccceEEEEECC
Confidence 988864211 0 122677777765432211 11279999999999 88 45431 1 11100 01223588899
Q ss_pred eEEEEcccCCCcccccc---cccCCCCcEEeec
Q 012060 339 TLFKICSKSGDIAMADL---RNLGEDPWVYMED 368 (472)
Q Consensus 339 ~iy~vGg~~g~~~~~dl---~s~e~d~W~~~~~ 368 (472)
+|.++........ .++ +..+...|+..-.
T Consensus 155 ~L~~v~~~~~~~~-~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 155 KLAVLKQKKDTNN-FDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EEEEEEecCCCCc-EEEEEECCCCCCceeEEEE
Confidence 9998886432211 222 2233556987544
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.58 E-value=7.1 Score=43.15 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=123.9
Q ss_pred CCCccccccccceee--eeCCeEEEEcCcCCCCceecceeeeecCC-------CCccccCCCCc-CcccceeEEEEeC-C
Q 012060 161 SVTVRTHLDNITSIR--HVWSDVAAVGSDYSSGIHFYDLSSSRHVA-------SAHWTDPSDPR-IYRATVTAIADSP-T 229 (472)
Q Consensus 161 m~~~R~~~~~v~~v~--~l~~~lYavGG~~~~g~~~l~sve~ydp~-------t~~W~~~a~m~-~~R~~~~ava~l~-g 229 (472)
|.+.|+|---+.+++ +-++.+.|-|| .++.-. +++++.. .|+ ....++. -++.++-++|.-+ +
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgG--LD~~If---lWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGG--LDRKIF---LWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecC--CCccEE---EEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcc
Confidence 556666533333333 35889999999 554321 2233211 111 1222332 3444443233332 3
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEe---------cCCeEEEEEEeCCCccccceEE
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP---------ATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~---------~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
.|+++| +..+.+-.|||+|.+ -.|+++-+. -+|.=..+|+. .++|.
T Consensus 184 t~ivsG---gtek~lr~wDprt~~----------------kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIr 238 (735)
T KOG0308|consen 184 TIIVSG---GTEKDLRLWDPRTCK----------------KIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIR 238 (735)
T ss_pred eEEEec---CcccceEEecccccc----------------ceeeeeccccceEEEEEcCCCCeEeecCC------CceEE
Confidence 477742 346788899999943 126655221 23322233332 35799
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
+||....+++=+...+- ..--... +...-..+| .||.++.....||++.. .=+.+.....|
T Consensus 239 lWdLgqQrCl~T~~vH~--e~VWaL~------~~~sf~~vY-sG~rd~~i~~Tdl~n~~--~~tlick~daP-------- 299 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHK--EGVWALQ------SSPSFTHVY-SGGRDGNIYRTDLRNPA--KSTLICKEDAP-------- 299 (735)
T ss_pred eeeccccceeeeEEecc--CceEEEe------eCCCcceEE-ecCCCCcEEecccCCch--hheEeecCCCc--------
Confidence 99988877665554440 1111111 122234566 78899888777888642 11333321111
Q ss_pred CCcCeEEEEECCEEEEe-cCCeEEEeecccc---cccc--ccCCcceeeccccc--cccC---CCCceEEEeecCceEEE
Q 012060 381 NGENKLIHCYKNQVFVG-RGGSLEVWSRVRE---GRNR--SCSEGLFRRNFVDR--VEDS---GRGAISRIDAGGNRLFV 449 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~-~g~~~~v~~~~~~---~~~~--~~~~~~~r~~~~~~--~~~~---~~~~i~~~~~gg~r~f~ 449 (472)
+....+.-++++++++ ..++|+=|..... .-.+ -....--+-+..+. -+|+ +|..|++-+.=+||=-|
T Consensus 300 -v~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhV 378 (735)
T KOG0308|consen 300 -VLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHV 378 (735)
T ss_pred -hhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceE
Confidence 0112222345666665 5677777776533 0000 00111112222221 1222 45588888888887766
Q ss_pred eeecc-ceeEEee
Q 012060 450 SREDV-EGIEVWE 461 (472)
Q Consensus 450 ~~~~~-~~~~vw~ 461 (472)
+-+|- ..+-+|+
T Consensus 379 lTkDa~gnv~lwD 391 (735)
T KOG0308|consen 379 LTKDAKGNVALWD 391 (735)
T ss_pred eeecCCCCEEEEE
Confidence 65554 4577887
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=86.32 E-value=27 Score=32.11 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=88.8
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
.|++++. ...+-.||..+.+++.++... ........+.+- +.++++++. .+.+..||+++++.
T Consensus 65 ~l~~~~~----~~~i~i~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~~~~~~~------~~~i~~~~~~~~~~ 127 (289)
T cd00200 65 YLASGSS----DKTIRLWDLETGECVRTLTGH------TSYVSSVAFSPD-GRILSSSSR------DKTIKVWDVETGKC 127 (289)
T ss_pred EEEEEcC----CCeEEEEEcCcccceEEEecc------CCcEEEEEEcCC-CCEEEEecC------CCeEEEEECCCcEE
Confidence 4555544 347888998874433322210 001122333333 455555542 35799999998886
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
+...... ...+.+++... ++.++++|..++.+..-|++.-+ .-..+.. ... .-..++.
T Consensus 128 ~~~~~~~--------~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~-------~~~----~i~~~~~ 185 (289)
T cd00200 128 LTTLRGH--------TDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTG-------HTG----EVNSVAF 185 (289)
T ss_pred EEEeccC--------CCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccc--cceeEec-------Ccc----ccceEEE
Confidence 6555532 11121222222 24555555556655443443211 0111111 110 1122232
Q ss_pred ECC--EEEEec-CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecC
Q 012060 390 YKN--QVFVGR-GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 390 ~~g--~l~~~~-g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~ 463 (472)
..+ .|++.. .+.|.+|+-... .. .+.+.+ ..+.|..+.+-. ++++++-.+...+-+|+..
T Consensus 186 ~~~~~~l~~~~~~~~i~i~d~~~~--------~~-~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 186 SPDGEKLLSSSSDGTIKLWDLSTG--------KC-LGTLRG-----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCcCEEEEecCCCcEEEEECCCC--------ce-ecchhh-----cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 222 555554 588999986422 00 111111 223688888776 5677777767788899864
|
|
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.85 E-value=0.63 Score=46.19 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC-CCCCC---CE-EEcCChhhHHHHhhccccCcccC
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPN---PI-FIDRDPDVFSVLLSLLRSNRLPS 80 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~---~v-fiDrdp~~F~~IL~flrtg~l~~ 80 (472)
....++.|....+.|++||+.|++. -++|+-+.+.. +.+.. ++ |.+.|-.+|+.+|.+++||+.-.
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaR--CpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgm 198 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAAR--CPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGM 198 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhh--CcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccch
Confidence 3456778888889999999999998 55999887654 22222 22 55788899999999999998753
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.61 E-value=11 Score=40.18 Aligned_cols=198 Identities=18% Similarity=0.256 Sum_probs=111.9
Q ss_pred EEE-eCCeEEE-EecCCCCCceeEEEeCCCccccccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 224 IAD-SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 224 va~-l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+|+ .|++.+| ||.+ +-|..||+.|.+++.-+ |+ .-+-+.+...--.+-||+++ ...+|-
T Consensus 208 ~avS~Dgkylatgg~d----~~v~Iw~~~t~ehv~~~~gh-------r~~V~~L~fr~gt~~lys~s-------~Drsvk 269 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRD----RHVQIWDCDTLEHVKVFKGH-------RGAVSSLAFRKGTSELYSAS-------ADRSVK 269 (479)
T ss_pred EEEcCCCcEEEecCCC----ceEEEecCcccchhhccccc-------ccceeeeeeecCccceeeee-------cCCceE
Confidence 555 4566777 6543 45789999997743321 11 11113334334566677653 245788
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
.|+......|=++-.. .+++.+++|-. ..+.--|||.|.... | |.- ++..+.|-.+.
T Consensus 270 vw~~~~~s~vetlyGH--------qd~v~~IdaL~-reR~vtVGgrDrT~r---l-------wKi-~eesqlifrg~--- 326 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGH--------QDGVLGIDALS-RERCVTVGGRDRTVR---L-------WKI-PEESQLIFRGG--- 326 (479)
T ss_pred EEehhHhHHHHHHhCC--------ccceeeechhc-ccceEEeccccceeE---E-------Eec-cccceeeeeCC---
Confidence 8877666622222222 45566666665 456666888885432 1 322 33333322222
Q ss_pred CCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcce-eeccccccc--cCCCC--ceEEE-eecCceEEEeee
Q 012060 381 NGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLF-RRNFVDRVE--DSGRG--AISRI-DAGGNRLFVSRE 452 (472)
Q Consensus 381 ~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~-r~~~~~~~~--~~~~~--~i~~~-~~gg~r~f~~~~ 452 (472)
+.+--.+|..+..=|++|. |+|-+||-... +-+| +++-=+-.+ +.-.+ =|+.+ .++|.-||++=.
T Consensus 327 ~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK-------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 327 EGSIDCVAFINDEHFVSGSDNGSIALWSLLKK-------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred CCCeeeEEEecccceeeccCCceEEEeeeccc-------CceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 2255667788888899977 99999997543 0111 111111111 11222 46665 479999999999
Q ss_pred ccceeEEeecCCCCcce
Q 012060 453 DVEGIEVWESSNLSGVV 469 (472)
Q Consensus 453 ~~~~~~vw~~~~~~~~~ 469 (472)
-.-.|-+|.++.-.-+|
T Consensus 400 ~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAI 416 (479)
T ss_pred CCCceEEEEecCCcccc
Confidence 99999999987653333
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.52 E-value=8.7 Score=41.61 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=81.7
Q ss_pred cceeeccCCcEEEeee---CceEEee-cccCCCCCccc-cccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCc
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYD-WNLSHSVTVRT-HLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH 207 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YD-W~~~~m~~~R~-~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~ 207 (472)
+....+. |..+ |+| |.|+.|| +.....+..+- +-+-+ ++...++.+...|. .+|.-. -+|.+..+
T Consensus 222 Sv~ws~~-G~~L-avG~~~g~v~iwD~~~~k~~~~~~~~h~~rv-g~laW~~~~lssGs--r~~~I~-----~~dvR~~~ 291 (484)
T KOG0305|consen 222 SVKWSPD-GSHL-AVGTSDGTVQIWDVKEQKKTRTLRGSHASRV-GSLAWNSSVLSSGS--RDGKIL-----NHDVRISQ 291 (484)
T ss_pred EEEECCC-CCEE-EEeecCCeEEEEehhhccccccccCCcCcee-EEEeccCceEEEec--CCCcEE-----EEEEecch
Confidence 3433334 4444 677 6799999 66533333333 22222 33345678888887 344221 22222221
Q ss_pred cccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc-cceeEEecCCeEE
Q 012060 208 WTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-GKLTWIPATGVVL 284 (472)
Q Consensus 208 W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-m~~~~~~~~g~Ly 284 (472)
..+.-|+..+..++++.-. ++..+| ||. .|.+-.||-...+|.--+ |...++ =.+.|++...-|.
T Consensus 292 -~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~~Iwd~~~~~p~~~~-------~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 292 -HVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVVFIWDGLSPEPKFTF-------TEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred -hhhhhhhcccceeeeeEECCCCCeeccCCC----ccceEeccCCCccccEEE-------eccceeeeEeeeCCCccCce
Confidence 1111154445444334433 455777 543 467888998664432222 333333 2356888787888
Q ss_pred EEEEeCCCccccceEEEEcCCCCe
Q 012060 285 GSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 285 v~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
|+|| |. -...|..||+.+++
T Consensus 360 AsGG--Gs--~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 360 ATGG--GS--ADRCIKFWNTNTGA 379 (484)
T ss_pred EEcC--CC--cccEEEEEEcCCCc
Confidence 8776 44 25689999999987
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.84 E-value=48 Score=39.14 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=76.8
Q ss_pred CcEEEeeeC-ceEEeeccc-CCCCCccc---cccccceeeee---CCeEEEEcCcCCCCceecceeeeecCCCC------
Q 012060 141 GSLWIAHGG-QISVYDWNL-SHSVTVRT---HLDNITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRHVASA------ 206 (472)
Q Consensus 141 g~l~va~GG-~Ve~YDW~~-~~m~~~R~---~~~~v~~v~~l---~~~lYavGG~~~~g~~~l~sve~ydp~t~------ 206 (472)
..+++|-+- .|.+|||.. ..+..... ...-++.+..+ |..+..+|. .+|. +-.|++..+
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas--~dGv-----IRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS--SDGV-----IRIWKDYADKWKKPE 1149 (1387)
T ss_pred ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec--cCce-----EEEecccccccCCce
Confidence 345533322 388999875 33221111 11122334444 345666666 4662 333433333
Q ss_pred ---ccccCCCC-cCcccceeEEEEe---CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec
Q 012060 207 ---HWTDPSDP-RIYRATVTAIADS---PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA 279 (472)
Q Consensus 207 ---~W~~~a~m-~~~R~~~~ava~l---~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~ 279 (472)
.|..+..| ...|.. +++... .|+||++|+ ..+|-.||.++-+.+..|--- .-+.+.+ +.-...
T Consensus 1150 LVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tGd----~r~IRIWDa~~E~~~~diP~~---s~t~vTa--LS~~~~ 1219 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTGD----VRSIRIWDAHKEQVVADIPYG---SSTLVTA--LSADLV 1219 (1387)
T ss_pred eEEeeccccccCccCCCC-CeeeehhhhCCeEEecCC----eeEEEEEecccceeEeecccC---CCcccee--eccccc
Confidence 37776654 455543 335544 478999544 468999999996655544441 1111111 112225
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+|-+.|+|-.|| +|+.||-|...
T Consensus 1220 ~gn~i~AGfaDG------svRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1220 HGNIIAAGFADG------SVRVYDRRMAP 1242 (1387)
T ss_pred CCceEEEeecCC------ceEEeecccCC
Confidence 577778876444 69999977664
|
|
| >KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.16 E-value=0.7 Score=42.72 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=59.7
Q ss_pred ECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCE-EEcCChhhHHHHhhccccCccc---------------CCC-
Q 012060 22 VGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPI-FIDRDPDVFSVLLSLLRSNRLP---------------STA- 82 (472)
Q Consensus 22 VGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~v-fiDrdp~~F~~IL~flrtg~l~---------------~~~- 82 (472)
-+|+.|.+...++.. +..+..++... ......+ ...+.+.+|..||.|++.=+-. +++
T Consensus 12 sDG~~f~ve~~~a~~---s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 12 SDGEIFEVEEEVARQ---SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred cCCceeehhHHHHHH---hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 489999999999988 56777776532 1121244 3359999999999999773211 100
Q ss_pred -------CCcchHHHHhhhhhcCcchHHhhhc
Q 012060 83 -------SRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 83 -------~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+...+.+|+.+|+||.|..|+..||
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~gLl~~~c 120 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKGLLDLTC 120 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHHHHHHHH
Confidence 1135678899999999999999998
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=83.95 E-value=20 Score=36.11 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEec---CCCCCceeEEEeCCCcccccccccccCCC
Q 012060 190 SGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLV---CPHKENSVLLIDKSTLQISSEIGRQSGAS 265 (472)
Q Consensus 190 ~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~---~~~~l~sVE~YDp~t~~~~~~~~~~~~~~ 265 (472)
.|.-.+..+-.||+...+|..+..= -.-.+.++... ++.|||+|. ++.....+-.||..+ +.
T Consensus 10 aGsL~C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~------------~~ 75 (281)
T PF12768_consen 10 AGSLPCPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN------------QT 75 (281)
T ss_pred CCCcCCCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC------------Ce
Confidence 3443577788999999999987643 12233334444 678999543 122466788999999 34
Q ss_pred ccccccc-------ceeEEe----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 266 SKNMAVG-------KLTWIP----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 266 W~~v~~m-------~~~~~~----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
|+.+... ...... -...++++|.. .. -..++..|| -.+ |.....
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~-g~~~l~~~d--Gs~--W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--AN-GSTFLMKYD--GSS--WSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEecee--cC-CCceEEEEc--CCc--eEeccc
Confidence 9777662 122221 33457776653 11 245899996 557 988877
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.43 E-value=17 Score=35.74 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=83.1
Q ss_pred eeeCc--eEEeeccc-CCCCCccccccccceeeeeCC-eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccce
Q 012060 146 AHGGQ--ISVYDWNL-SHSVTVRTHLDNITSIRHVWS-DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATV 221 (472)
Q Consensus 146 a~GG~--Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~-~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~ 221 (472)
..||- |.+||-.. .-...-|.|.+-++.+.+-+. .+.+-|+ ++ .++-++|-++++-.++.-+.+.+-++
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs--fD-----~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS--FD-----SSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc--cc-----ceeEEEEcccCCCCccchhhhhcCce
Confidence 55664 66666333 344444666666665554433 4455555 44 46788999999999999999999998
Q ss_pred eEEEEeCCe-EEEEecCCCCCceeEEEeCCCccccccccccc-CCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 222 TAIADSPTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQS-GASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 222 ~ava~l~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~-~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
. ...+.++ |.||--+ -++-.||.+. |+-. +..=+++ .......-.+++.|+. ..+++
T Consensus 149 ~-Si~v~~heIvaGS~D----GtvRtydiR~-------G~l~sDy~g~pi--t~vs~s~d~nc~La~~-------l~stl 207 (307)
T KOG0316|consen 149 S-SIDVAEHEIVAGSVD----GTVRTYDIRK-------GTLSSDYFGHPI--TSVSFSKDGNCSLASS-------LDSTL 207 (307)
T ss_pred e-EEEecccEEEeeccC----CcEEEEEeec-------ceeehhhcCCcc--eeEEecCCCCEEEEee-------cccee
Confidence 7 5566666 5555333 3678999998 3321 1111111 1222334566666642 24589
Q ss_pred EEEcCCCCe
Q 012060 300 RMWDPRSGE 308 (472)
Q Consensus 300 e~yDp~~~~ 308 (472)
++.|-.|++
T Consensus 208 rLlDk~tGk 216 (307)
T KOG0316|consen 208 RLLDKETGK 216 (307)
T ss_pred eecccchhH
Confidence 999999998
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.43 E-value=40 Score=34.94 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=50.5
Q ss_pred eEEE--EecCC----CCCceeEEEeCCCcccccccccccCCCcccccccc-eeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 230 TVFS--SLVCP----HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK-LTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 230 ~IYA--Gg~~~----~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~-~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
.||+ .++.. .|..-||.||+.|++|..||--+....-..++.-. .+...-+..+||--- + -..+|-.-
T Consensus 49 ~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~---T--Pa~SVtVV 123 (342)
T PF06433_consen 49 TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF---T--PATSVTVV 123 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE---S--SSEEEEEE
T ss_pred EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc---C--CCCeEEEE
Confidence 4886 44432 35889999999999999988774321112111111 122235566666422 1 24599999
Q ss_pred cCCCCeeeeEEcCC
Q 012060 303 DPRSGEVVWETNEP 316 (472)
Q Consensus 303 Dp~~~~~vW~~~~~ 316 (472)
|...+++|=|.--|
T Consensus 124 Dl~~~kvv~ei~~P 137 (342)
T PF06433_consen 124 DLAAKKVVGEIDTP 137 (342)
T ss_dssp ETTTTEEEEEEEGT
T ss_pred ECCCCceeeeecCC
Confidence 99999988776666
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.37 E-value=59 Score=33.53 Aligned_cols=133 Identities=16% Similarity=0.189 Sum_probs=77.7
Q ss_pred cCCCCccccCCCCcCcccceeE-EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc-----ccee
Q 012060 202 HVASAHWTDPSDPRIYRATVTA-IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-----GKLT 275 (472)
Q Consensus 202 dp~t~~W~~~a~m~~~R~~~~a-va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-----m~~~ 275 (472)
.-.+..|...-........... .+..++.||++..++ .+-.+|+.+.+ -.|+.-.. +..+
T Consensus 41 ~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G----~i~A~d~~~g~----------~~W~~~~~~~~~~~~~~ 106 (370)
T COG1520 41 TSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDG----NIFALNPDTGL----------VKWSYPLLGAVAQLSGP 106 (370)
T ss_pred cCcceeeeeecccCccceEeccccEeeCCeEEEecCCC----cEEEEeCCCCc----------EEecccCcCcceeccCc
Confidence 3355667543222222223222 267789999963333 57788999933 23744333 3333
Q ss_pred EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 276 WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 276 ~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
....+|+||+... .+.+.|+|+++++.+|+...++ + .+...+ +.+.++.+|... .++.+.. |
T Consensus 107 ~~~~~G~i~~g~~-------~g~~y~ld~~~G~~~W~~~~~~-~--~~~~~~-----~v~~~~~v~~~s-~~g~~~a--l 168 (370)
T COG1520 107 ILGSDGKIYVGSW-------DGKLYALDASTGTLVWSRNVGG-S--PYYASP-----PVVGDGTVYVGT-DDGHLYA--L 168 (370)
T ss_pred eEEeCCeEEEecc-------cceEEEEECCCCcEEEEEecCC-C--eEEecC-----cEEcCcEEEEec-CCCeEEE--E
Confidence 4445888888644 2379999999999999999995 2 333333 356677877664 2333221 3
Q ss_pred ccc-CCCCcEEe
Q 012060 356 RNL-GEDPWVYM 366 (472)
Q Consensus 356 ~s~-e~d~W~~~ 366 (472)
+.- .+..|..=
T Consensus 169 ~~~tG~~~W~~~ 180 (370)
T COG1520 169 NADTGTLKWTYE 180 (370)
T ss_pred EccCCcEEEEEe
Confidence 322 26668753
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.14 E-value=22 Score=36.66 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCCCc--cccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH--WTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~--W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
+..++.+|+.. .+| .+-.+|+.+.+ |.....-...-.+- .+..-+|+||+|..++ .+=+||+.+
T Consensus 65 ~~~dg~v~~~~---~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~-~~~~~~G~i~~g~~~g----~~y~ld~~~- 130 (370)
T COG1520 65 ADGDGTVYVGT---RDG-----NIFALNPDTGLVKWSYPLLGAVAQLSG-PILGSDGKIYVGSWDG----KLYALDAST- 130 (370)
T ss_pred EeeCCeEEEec---CCC-----cEEEEeCCCCcEEecccCcCcceeccC-ceEEeCCeEEEecccc----eEEEEECCC-
Confidence 34788888863 345 45567777776 86644320011111 1444489999965444 577899987
Q ss_pred ccccccccccCCCcccccccc----eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 253 QISSEIGRQSGASSKNMAVGK----LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~----~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
|+ ..|+.-.+.. -+-...++.+|+.. ..+.+-+.|+.+++..|+..-+.. ...+.....
T Consensus 131 ------G~---~~W~~~~~~~~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~ 193 (370)
T COG1520 131 ------GT---LVWSRNVGGSPYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSP 193 (370)
T ss_pred ------Cc---EEEEEecCCCeEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCc
Confidence 44 4588877761 11123667777642 246799999999999999766521 233333332
Q ss_pred cceeeeecCCeEEEE
Q 012060 329 ADVDVDVDELTLFKI 343 (472)
Q Consensus 329 ~d~~v~~~~~~iy~v 343 (472)
....+.+|+-
T Consensus 194 -----~~~~~~vy~~ 203 (370)
T COG1520 194 -----AIASGTVYVG 203 (370)
T ss_pred -----eeecceEEEe
Confidence 3556777744
|
|
| >PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=82.73 E-value=0.93 Score=34.79 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=40.0
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhcccc
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRS 75 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrt 75 (472)
|+|.- +|+.|.+.+.++.. |..++.|+.........+-+ ++++.+|+.|++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~~---S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAKQ---SKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHTT---SHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHHH---hHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 44433 78999999999987 67999998643222224644 8999999999999853
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A .... |
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=82.25 E-value=0.23 Score=55.83 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=57.4
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE---cCChhhHHHHhhccc-cCcccCCCCCcc---h
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI---DRDPDVFSVLLSLLR-SNRLPSTASRFS---K 87 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi---Drdp~~F~~IL~flr-tg~l~~~~~~~~---v 87 (472)
.-+|++. +|+.|.+|+-.|.+. ..||..||..--.+...+.. -...++++.||+|+| +-+..+..+..+ .
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aR--lEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSAR--LEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeH--HHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3455666 999999999999998 78999998742111122322 345799999999999 444332211111 2
Q ss_pred HHHHhhhhhcCcchHHhhhc
Q 012060 88 QELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 88 ~~Ll~eA~~~ql~~l~~~c~ 107 (472)
-++|.-|+.|=|..+..-|.
T Consensus 789 ~~il~iaDqlli~~Lk~Ice 808 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICE 808 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.13 E-value=37 Score=35.61 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=92.6
Q ss_pred cceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC-----eEEE-EecCCCCCcee
Q 012060 171 ITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT-----TVFS-SLVCPHKENSV 244 (472)
Q Consensus 171 v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g-----~IYA-Gg~~~~~l~sV 244 (472)
+.+++..++.|...=+ +|.-.+...+.-|.+ -.++...+++-+ ++.+.+ .|.| ||. .+.+-+
T Consensus 108 I~gl~~~dg~Litc~~---sG~l~~~~~k~~d~h------ss~l~~la~g~g-~~~~r~~~~~p~Iva~GGk--e~~n~l 175 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVS---SGNLQVRHDKSGDLH------SSKLIKLATGPG-LYDVRQTDTDPYIVATGGK--ENINEL 175 (412)
T ss_pred ccchhhcCCEEEEEec---CCcEEEEeccCCccc------cccceeeecCCc-eeeeccCCCCCceEecCch--hcccce
Confidence 3345556777665533 343333334433322 122222233332 444432 5888 743 236889
Q ss_pred EEEeCCCcccccccccccCCCcccccc------ccee-EEe----cC---CeEEEEEEeCCCccccceEEEEcCCCCe-e
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAV------GKLT-WIP----AT---GVVLGSAIAWGAFGYSGYVRMWDPRSGE-V 309 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~------m~~~-~~~----~~---g~Lyv~Gg~~g~~~~~~sve~yDp~~~~-~ 309 (472)
+.||.+..+ ..|+...+ |..+ |.. +. ..-+|.+- ....|+.|||+.++ +
T Consensus 176 kiwdle~~~----------qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T------~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 176 KIWDLEQSK----------QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT------RYHQVRLYDTRHQRRP 239 (412)
T ss_pred eeeecccce----------eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe------cceeEEEecCcccCcc
Confidence 999999843 34665433 2222 211 11 33344322 24589999999885 2
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
|=++- - + -.++.-++....++.|| +|-..+.++..|+|.-- -.. ....|...+-..|+|
T Consensus 240 V~~fd-~--~-----E~~is~~~l~p~gn~Iy-~gn~~g~l~~FD~r~~k-----l~g-------~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 240 VAQFD-F--L-----ENPISSTGLTPSGNFIY-TGNTKGQLAKFDLRGGK-----LLG-------CGLKGITGSIRSIHC 298 (412)
T ss_pred eeEec-c--c-----cCcceeeeecCCCcEEE-EecccchhheecccCce-----eec-------cccCCccCCcceEEE
Confidence 21111 0 1 23332333456677777 67666766665666421 111 111234446778999
Q ss_pred ECC-EEEEecC
Q 012060 390 YKN-QVFVGRG 399 (472)
Q Consensus 390 ~~g-~l~~~~g 399 (472)
|.+ ++.++.|
T Consensus 299 hp~~~~las~G 309 (412)
T KOG3881|consen 299 HPTHPVLASCG 309 (412)
T ss_pred cCCCceEEeec
Confidence 998 7777777
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.87 E-value=8 Score=42.28 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=44.4
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec-C-CeEEEEcccCCCccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD-E-LTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~-~-~~iy~vGg~~g~~~~~dl~ 356 (472)
.+++| ++|+. .+.||+||||+.+.|=+.-.+++-...-+++.++-|++... + +.=++||-.+|....-|||
T Consensus 186 ~hgLl-a~Gt~------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 186 EHGLL-ACGTE------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred ccceE-Eeccc------CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 55554 55553 45799999999987766666643333334444444444332 2 4556677677766655787
Q ss_pred ccC
Q 012060 357 NLG 359 (472)
Q Consensus 357 s~e 359 (472)
.-.
T Consensus 259 a~~ 261 (703)
T KOG2321|consen 259 ASK 261 (703)
T ss_pred cCC
Confidence 544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.67 E-value=5.3 Score=41.35 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=57.1
Q ss_pred eeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
-|+.||+..+.|++.+. |-.=.-.....-+..-.|.++++. .++|-+||.|+++++=..+-. |++-
T Consensus 168 ~i~IWD~~R~~Pv~sms------wG~Dti~svkfNpvETsILas~~s------DrsIvLyD~R~~~Pl~KVi~~--mRTN 233 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMS------WGADSISSVKFNPVETSILASCAS------DRSIVLYDLRQASPLKKVILT--MRTN 233 (433)
T ss_pred eeeecccccCCccceee------cCCCceeEEecCCCcchheeeecc------CCceEEEecccCCccceeeee--cccc
Confidence 58999998877665443 322111112222355556666552 457999999999855444433 2322
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
..|. -- +...|++|..|-.+..-|+|.++
T Consensus 234 --~Isw-----nP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 234 --TICW-----NP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred --ceec-----Cc-cccceeeccccccceehhhhhhc
Confidence 3343 44 77788888877777777787766
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.42 E-value=44 Score=34.02 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=86.0
Q ss_pred CceEEeecccCCCC-CccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNLSHSV-TVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~~~m~-~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.+..||-...+|. ..+... .+.++++.+..-.++|| .+| .+-.||..+.+=..+..-..+-. ++.-.
T Consensus 35 gslrlYdv~~~~l~~~~~~~~-plL~c~F~d~~~~~~G~--~dg-----~vr~~Dln~~~~~~igth~~~i~---ci~~~ 103 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLKFKHGA-PLLDCAFADESTIVTGG--LDG-----QVRRYDLNTGNEDQIGTHDEGIR---CIEYS 103 (323)
T ss_pred CcEEEEeccchhhhhheecCC-ceeeeeccCCceEEEec--cCc-----eEEEEEecCCcceeeccCCCceE---EEEee
Confidence 44778883321222 223332 23356677877777888 555 56788877766444432222211 23333
Q ss_pred --CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 228 --PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 228 --~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
.|.+-+|+++ ++|+.|||..-+++--+++ +-|.-.+.+.+-..++|.. ...|-.||.|
T Consensus 104 ~~~~~vIsgsWD----~~ik~wD~R~~~~~~~~d~----------~kkVy~~~v~g~~LvVg~~------~r~v~iyDLR 163 (323)
T KOG1036|consen 104 YEVGCVISGSWD----KTIKFWDPRNKVVVGTFDQ----------GKKVYCMDVSGNRLVVGTS------DRKVLIYDLR 163 (323)
T ss_pred ccCCeEEEcccC----ccEEEEecccccccccccc----------CceEEEEeccCCEEEEeec------CceEEEEEcc
Confidence 5666666665 5899999996221111111 1133333344444444441 3479999999
Q ss_pred CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 306 ~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
+..-.-...+...--.-|.-. .+=++.=|+++.-+|....
T Consensus 164 n~~~~~q~reS~lkyqtR~v~-------~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVA-------LVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccchhhhccccceeEEEEEE-------EecCCCceEEEeecceEEE
Confidence 886222222220001122222 2337777888888876543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.22 E-value=1.1e+02 Score=34.41 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=71.3
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMI 374 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~ 374 (472)
-++|..||+..++ ....- ...-.|. .-++++..++++| ++|-++.... ++... ..+|+....+.-.
T Consensus 224 ~G~V~FWd~~~gT----LiqS~---~~h~adV-l~Lav~~~~d~vf-saGvd~~ii~--~~~~~~~~~wv~~~~r~~h-- 290 (691)
T KOG2048|consen 224 AGTVTFWDSIFGT----LIQSH---SCHDADV-LALAVADNEDRVF-SAGVDPKIIQ--YSLTTNKSEWVINSRRDLH-- 290 (691)
T ss_pred CceEEEEcccCcc----hhhhh---hhhhcce-eEEEEcCCCCeEE-EccCCCceEE--EEecCCccceeeeccccCC--
Confidence 4689999999998 55441 1111221 1234455556766 5566655442 33222 5569988763322
Q ss_pred cCCCCCCCcCeEEEEECCEEEEecCCeEEEeeccccccccccCCcceeecccccc---ccCCCCceEEEeecCceEEEee
Q 012060 375 SSSGNNNGENKLIHCYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRV---EDSGRGAISRIDAGGNRLFVSR 451 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~~i~~~~~gg~r~f~~~ 451 (472)
++ .=-.+++++.+||..|-+-.=+.+.... -+++++. .-..+ .+.. ..+=+||++.+
T Consensus 291 -~h-----dvrs~av~~~~l~sgG~d~~l~i~~s~~------------~~~~~h~~~~~~p~~-~~v~-~a~~~~L~~~w 350 (691)
T KOG2048|consen 291 -AH-----DVRSMAVIENALISGGRDFTLAICSSRE------------FKNMDHRQKNLFPAS-DRVS-VAPENRLLVLW 350 (691)
T ss_pred -cc-----cceeeeeecceEEecceeeEEEEccccc------------cCchhhhcccccccc-ceee-cCccceEEEEe
Confidence 22 2346788999887776665555555422 1111211 11122 2222 34668999999
Q ss_pred eccceeEEee
Q 012060 452 EDVEGIEVWE 461 (472)
Q Consensus 452 ~~~~~~~vw~ 461 (472)
++. +++.|-
T Consensus 351 ~~h-~v~lwr 359 (691)
T KOG2048|consen 351 KAH-GVDLWR 359 (691)
T ss_pred ccc-ccccee
Confidence 764 556674
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.14 E-value=27 Score=38.49 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=89.6
Q ss_pred eEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP- 228 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~- 228 (472)
|.+|+++. +...+.|.+.+.|. ...+++.+.+.|. ++| ++-.||+.+.+-...-.-++.|-. ++.+-.
T Consensus 313 VkVW~v~n~~~l~l~~~h~~~V~-~v~~~~~~lvsgs--~d~-----~v~VW~~~~~~cl~sl~gH~~~V~--sl~~~~~ 382 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTGPVN-CVQLDEPLLVSGS--YDG-----TVKVWDPRTGKCLKSLSGHTGRVY--SLIVDSE 382 (537)
T ss_pred EEEEeccCcceEEEeccccccEE-EEEecCCEEEEEe--cCc-----eEEEEEhhhceeeeeecCCcceEE--EEEecCc
Confidence 55555554 66666665444443 3456677777776 555 677888886653332222222222 232223
Q ss_pred CeEEEEecCCCCCceeEEEeCCCc-ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 229 TTVFSSLVCPHKENSVLLIDKSTL-QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 229 g~IYAGg~~~~~l~sVE~YDp~t~-~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
..+|-|.. ..+|..||+.+. +.+--+.. = .+-..-+.+.+.+++++.. .+.|..||-.++
T Consensus 383 ~~~~Sgs~----D~~IkvWdl~~~~~c~~tl~~-----h----~~~v~~l~~~~~~Lvs~~a------D~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 383 NRLLSGSL----DTTIKVWDLRTKRKCIHTLQG-----H----TSLVSSLLLRDNFLVSSSA------DGTIKLWDAEEG 443 (537)
T ss_pred ceEEeeee----ccceEeecCCchhhhhhhhcC-----C----cccccccccccceeEeccc------cccEEEeecccC
Confidence 33443433 368999999994 21000000 0 0111223366777777653 347999999999
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+++=+...+ ...+..+ .......+++.+.++....-||++-.
T Consensus 444 ~~~~~~~~~-----~~~~v~~-----l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 444 ECLRTLEGR-----HVGGVSA-----LALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ceeeeeccC-----CcccEEE-----eecCcceEEEEecCCeeEEEecccCc
Confidence 954444432 1122321 22223666677777766555666544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.02 E-value=15 Score=36.15 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=54.3
Q ss_pred CceeEEEeCCCcccccccccccCCCcccc-cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNM-AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
.+.|-+||.+|.+.+. + |.-= +-.+.-+..-..-+.++|+ +.++|++||=|++. -+++.- .
T Consensus 80 Dk~v~vwDV~TGkv~R---r-----~rgH~aqVNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~s--~ePiQi--l 141 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDR---R-----FRGHLAQVNTVRFNEESSVVASGS------FDSSVRLWDCRSRS--FEPIQI--L 141 (307)
T ss_pred CceEEEEEcccCeeee---e-----cccccceeeEEEecCcceEEEecc------ccceeEEEEcccCC--CCccch--h
Confidence 4689999999944221 1 1111 1122333444555666655 45689999999998 444443 2
Q ss_pred CCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 320 RSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
.+.+-+.. - ..+.+..-+.|..||....-|+|
T Consensus 142 dea~D~V~--S---i~v~~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 142 DEAKDGVS--S---IDVAEHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred hhhcCcee--E---EEecccEEEeeccCCcEEEEEee
Confidence 34444443 2 33455667778888886655665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-24
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSV 68
V+LNVGG F TT T+ P S LY L DE IDRDP F
Sbjct: 5 SKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 63
Query: 69 LLSLLRSNRLPSTASRFSKQELADEALYYGIDS 101
+L+ LR +L +++ + +EA +Y I S
Sbjct: 64 VLNYLRHGKLVINKD-LAEEGVLEEAEFYNITS 95
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 7e-23
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSV 68
V+LNVGG F TT T+ P S LY L DE IDRDP F
Sbjct: 11 SKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 69
Query: 69 LLSLLRSNRLPSTASRFSKQELADEALYYGIDS 101
+L+ LR +L +++ + +EA +Y I S
Sbjct: 70 VLNYLRHGKLVINKD-LAEEGVLEEAEFYNITS 101
|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 2e-21
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 6 SDHTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS--DEPNPIFIDRDP 63
+ +++ + + LNV G+ F+T +T++ PD+LL + ++ F DRDP
Sbjct: 3 APADKNKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGSTEKEFFFNEDTKEYFFDRDP 61
Query: 64 DVFSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDS 101
+VF +L+ R+ +L DE +YGI
Sbjct: 62 EVFRCVLNFYRTGKL-HYPRYECISAYDDELAFYGILP 98
|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 5e-21
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSL 72
+RV +NVGG ET +T++ P + L L+ N F DR P VF+ +++
Sbjct: 5 NRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 63
Query: 73 LRSNRLPSTASRFSKQELADEALYYGIDSQL 103
RS +L + +E ++G+DS
Sbjct: 64 YRSGKLH-YPTDVCGPLFEEELEFWGLDSNQ 93
|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 1e-20
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS---DEPNPIFIDRDPDVFSVLLSL 72
+RV +NV G FET L T+ PD+LL R N F DR+ F +L
Sbjct: 1 ERVVINVSGLRFETQLKTLNQF-PDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYF 59
Query: 73 LRSNRLPSTASRFSKQELADEALYYGID 100
+S ++E +Y +
Sbjct: 60 YQSGGRLRRPVNVPLDVFSEEIKFYELG 87
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 4e-20
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 8 HTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS--DEPNPIFIDRDPDV 65
+++ + + LNV G+ F+T +T++ PD+LL + ++ F DRDP+V
Sbjct: 27 ADKNKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGSTEKEFFFNEDTKEYFFDRDPEV 85
Query: 66 FSVLLSLLRSNRLPSTASRFSKQELADEALYYGIDSQL 103
F +L+ R+ +L DE +YGI ++
Sbjct: 86 FRCVLNFYRTGKL-HYPRYECISAYDDELAFYGILPEI 122
|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 6e-18
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS--DEPNPIFIDRDPDVFSVLLSLLRS 75
+ LNV G F+T T++ PD+LL + E F DRDPD+F +L+ R+
Sbjct: 2 IVLNVSGTRFQTWQDTLERY-PDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 76 NRLPSTASRFSKQELADEALYYGIDSQL 103
+L +E ++G+ ++
Sbjct: 61 GKLHYPRH-ECISAYDEELAFFGLIPEI 87
|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 7 DHTPDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSD---EPNPIFIDRDP 63
D D ++ +RV +N+ G FET L T+ P++LL R N F DR+
Sbjct: 43 DPEADHESSERVVINISGLRFETQLKTLAQ-FPETLLGDPKKRMRYFDPLRNEYFFDRNR 101
Query: 64 DVFSVLLSLLRSNRL 78
F +L +S
Sbjct: 102 PSFDAILYYYQSGGR 116
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 74/279 (26%)
Query: 6 SDHTPDR-QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFIDRDPD 64
D N V + + E++L+ ++ + LS +F
Sbjct: 338 RDG-LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---------VFPP-SAH 386
Query: 65 VFSVLLSLLRSNRLPST----ASRFSKQELADE---ALYYGI-DSQLKSAMSPPPLQGID 116
+ ++LLSL+ + + S ++ K L ++ I L+ + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 117 ASIVSTVRPAADALPSTFTASSDDGSLWIAHGGQISVYDWNLSHSVTVRTHLDNI----- 171
SIV D + +H + H HL NI
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSH----------IGH------HLKNIEHPER 489
Query: 172 -TSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS-------DPRIYRATVTA 223
T R V+ D F + RH ++A W + Y+ +
Sbjct: 490 MTLFRMVFLD-----------FRFLE-QKIRHDSTA-WNASGSILNTLQQLKFYKPYIC- 535
Query: 224 IADSPTTVFSSLVCP-----HKENSVLLIDKST--LQIS 255
+ P + LV K L+ K T L+I+
Sbjct: 536 -DNDPK--YERLVNAILDFLPKIEENLICSKYTDLLRIA 571
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.97 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.97 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.97 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.97 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.96 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.96 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.96 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.96 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.96 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.95 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.95 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.95 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.95 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.93 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.92 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.9 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.88 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.84 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 99.83 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 99.82 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 99.8 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 99.79 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 99.77 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 99.77 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 99.76 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 99.55 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 99.53 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.52 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 99.51 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 99.5 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 99.49 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 99.49 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 99.49 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 99.49 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 99.47 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.47 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 99.47 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.45 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 99.45 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 99.44 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.4 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 99.39 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.38 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 99.38 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 99.35 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.23 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 98.72 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 98.39 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 98.15 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 98.12 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.06 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.01 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.86 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.85 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.84 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.78 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.66 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.64 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.62 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.61 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.58 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.56 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.55 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.51 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.5 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.45 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.42 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.42 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.39 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.39 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.33 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.32 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.29 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.27 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.27 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.23 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.22 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.22 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.17 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.14 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.14 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.12 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.09 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.09 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.08 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.05 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.01 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.99 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.98 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.93 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.91 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.89 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.89 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 96.88 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.81 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.79 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.78 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.77 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.66 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.64 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.63 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.63 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.62 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 96.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.58 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.58 | |
| 3v7d_A | 169 | Suppressor of kinetochore protein 1; WD 40 domain, | 96.56 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.51 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.49 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 96.45 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 96.42 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.37 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.35 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.33 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.23 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.18 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.15 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.15 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.09 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.04 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.02 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.9 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.88 | |
| 1vcb_B | 112 | Protein (elongin C); tumor suppressor, cancer, ubi | 95.8 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 95.8 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.74 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.73 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.71 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.66 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.57 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.56 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.54 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 95.53 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.46 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.46 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 95.42 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.36 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.36 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.35 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.27 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.22 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 95.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.1 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.1 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 95.07 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.07 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 94.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.93 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 94.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.91 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 94.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.8 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.75 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.66 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.63 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 94.44 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 94.3 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.28 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 94.27 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 94.25 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 94.23 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.13 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 93.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 93.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 93.66 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.64 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 93.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 93.62 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 93.58 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 93.48 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 93.34 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 93.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 93.16 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.16 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 93.13 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 93.12 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 93.1 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 92.91 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 92.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 92.6 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 92.58 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 92.22 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.14 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 91.79 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 91.77 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 91.74 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 91.56 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 91.31 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 91.19 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 90.77 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 90.73 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 90.42 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 90.27 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 90.11 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 89.3 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 89.04 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 88.63 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 88.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 87.48 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 87.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 86.54 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 86.19 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 85.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 85.71 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 85.04 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 84.81 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 84.81 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 83.92 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 83.67 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 83.29 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 82.82 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 82.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 82.51 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 82.47 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 82.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 81.66 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 81.01 |
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=258.75 Aligned_cols=230 Identities=17% Similarity=0.175 Sum_probs=191.4
Q ss_pred CcEEEeeeCc-------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCc
Q 012060 141 GSLWIAHGGQ-------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAH 207 (472)
Q Consensus 141 g~l~va~GG~-------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~ 207 (472)
+.||+ .||. +++|| |.. ++|+.+|..+++ +++++.||++|| .++...++.+++|||.+++
T Consensus 16 ~~i~v-~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~lyv~GG--~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 16 KLMVV-VGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGM----VYMAGLVFAVGG--FNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp EEEEE-ECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE----EEETTEEEEESC--BCSSSBCCCEEEEETTTTE
T ss_pred CEEEE-ECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceE----EEECCEEEEEeC--cCCCccccceEEECCCCCc
Confidence 56774 5552 89999 988 999999998854 458999999999 6666778999999999999
Q ss_pred cccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecC
Q 012060 208 WTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PAT 280 (472)
Q Consensus 208 W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~ 280 (472)
|+.+++|+.+|..++ +++++++||+ ||.++ ..++++|+|||.+++ |+.+++|..++. ..+
T Consensus 89 W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~~~~~ 155 (302)
T 2xn4_A 89 WTSVANMRDRRSTLG-AAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE------------WFHVAPMNTRRSSVGVGVVG 155 (302)
T ss_dssp EEEECCCSSCCBSCE-EEEETTEEEEEEEECSSCEEEEEEEEETTTTE------------EEEECCCSSCCBSCEEEEET
T ss_pred eeeCCCCCccccceE-EEEECCEEEEEcCCCCCccCceEEEEeCCCCe------------EeecCCCCCcccCceEEEEC
Confidence 999999999999996 8999999999 88776 458999999999944 999999887764 389
Q ss_pred CeEEEEEEeCCCc-cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 281 GVVLGSAIAWGAF-GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 281 g~Lyv~Gg~~g~~-~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+.||+.||.++.. ..++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++..+.
T Consensus 156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 156 GLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAE--MSTRRSGAGV-----GVLNNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp TEEEEECCEETTTTEECCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred CEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCC--CccccccccE-----EEECCEEEEECCCCCCcccceEEEEe
Confidence 9999999986653 246799999999999 999988 5789999985 78899999999988654333333333
Q ss_pred --CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 360 --EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 360 --~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
+++|+.+++ |+.+| .+..+++++++||+.+| .++++|+..
T Consensus 227 ~~~~~W~~~~~----~~~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 227 PTTNAWRQVAD----MNMCR-----RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp TTTTEEEEECC----CSSCC-----BSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCCCCEeeCCC----CCCcc-----ccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 899999997 77777 47889999999999998 358888775
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=257.32 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=190.5
Q ss_pred CcEEEeeeC----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcccc
Q 012060 141 GSLWIAHGG----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 141 g~l~va~GG----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~ 210 (472)
+.||+.+|. .+++|| |.. ++|+.+|..+++ +++++.||++|| .+ ...++.+++|||.+++|..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~lyv~GG--~~-~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAAC----VFWDNVVYILGG--SQ-LFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEE----EEETTEEEEECC--BS-SSBCCEEEEEETTTTEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEE----EEECCEEEEEeC--CC-CCCcceEEEEeCCCCeEEE
Confidence 567754443 299999 998 999999999844 459999999999 55 5678999999999999999
Q ss_pred CCCCcCcccceeEEEEeCCeEEE-EecC-C-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecCCe
Q 012060 211 PSDPRIYRATVTAIADSPTTVFS-SLVC-P-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PATGV 282 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~g~IYA-Gg~~-~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~g~ 282 (472)
+++|+.+|..++ +++++++||+ ||.+ + ..++.+++|||.+++ |+.+++|..++. ..++.
T Consensus 85 ~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~~~~~~~ 151 (306)
T 3ii7_A 85 KLGPPTPRDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRTES------------WHTKPSMLTQRCSHGMVEANGL 151 (306)
T ss_dssp EECCSSCCBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTTTE------------EEEECCCSSCCBSCEEEEETTE
T ss_pred CCCCCcccccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc------------eEeCCCCcCCcceeEEEEECCE
Confidence 999999999995 8899999999 8876 3 458999999999944 999999877654 38999
Q ss_pred EEEEEEeCCCcc---ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 283 VLGSAIAWGAFG---YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 283 Lyv~Gg~~g~~~---~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
||+.||.++... .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.....++..+.
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCP--MIEARKNHGL-----VFVKDKIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCEETTEEBCCEEEEE
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCe--EEECCC--ccchhhcceE-----EEECCEEEEEeCCCCCCCCceEEEee
Confidence 999999766532 27899999999999 999998 5889999985 77899999999987653322333332
Q ss_pred --CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 360 --EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 360 --~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
+++|+.+++ |+.+| .+..+++++++||+.+| .++++|+..
T Consensus 223 ~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 223 IKLNEWKMVSP----MPWKG-----VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp TTTTEEEECCC----CSCCB-----SCCEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred CCCCcEEECCC----CCCCc-----cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 899999987 77788 47889999999999999 678888775
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=256.38 Aligned_cols=231 Identities=14% Similarity=0.152 Sum_probs=191.6
Q ss_pred CCcEEEeee--C----ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCC----CCceecceeeeecC
Q 012060 140 DGSLWIAHG--G----QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYS----SGIHFYDLSSSRHV 203 (472)
Q Consensus 140 ~g~l~va~G--G----~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~----~g~~~l~sve~ydp 203 (472)
++.||+++| + .+++|| |.. ++++.+|..++ ++++++.||++|| . ++...++.+++|||
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG--~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA----GCVVGGLLYAVGG--RNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE----EEEETTEEEEECC--EEEETTEEEECCCEEEEET
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce----EEEECCEEEEECC--CcCCCCCCeecceEEEECC
Confidence 467885544 1 289999 988 99999999884 4458999999999 5 56677899999999
Q ss_pred CCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE----
Q 012060 204 ASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI---- 277 (472)
Q Consensus 204 ~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~---- 277 (472)
.+++|+.+++|+.+|..++ +++++++||+ ||.++ ..++.+|+|||.+++ |+.+++|..++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPERDE------------WHLVAPMLTRRIGVGV 164 (308)
T ss_dssp TTTEEEECCCCSSCCBTCE-EEEETTEEEEECCEETTEECCCEEEEETTTTE------------EEECCCCSSCCBSCEE
T ss_pred CCCeEeECCCCCcCccccE-EEEECCEEEEEcCCCCCcccccEEEECCCCCe------------EeECCCCCccccceEE
Confidence 9999999999999999996 8999999999 88765 358999999999944 999999877654
Q ss_pred -ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 278 -PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 278 -~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.....++.
T Consensus 165 ~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~v~ 234 (308)
T 1zgk_A 165 AVLNRLLYAVGGFDGTN-RLNSAECYYPERNE--WRMITA--MNTIRSGAGV-----CVLHNCIYAAGGYDGQDQLNSVE 234 (308)
T ss_dssp EEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBCCCEE
T ss_pred EEECCEEEEEeCCCCCC-cCceEEEEeCCCCe--EeeCCC--CCCccccceE-----EEECCEEEEEeCCCCCCccceEE
Confidence 3799999999987754 47899999999999 999988 5789999985 77899999999987654333333
Q ss_pred ccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 357 NLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 357 s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
.+. +++|+.+++ |+.+| .+..+++++++||+.+| .++++|+..
T Consensus 235 ~yd~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 235 RYDVETETWTFVAP----MKHRR-----SALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEETTTTEEEECCC----CSSCC-----BSCEEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEeCCCCcEEECCC----CCCCc-----cceEEEEECCEEEEEcCcCCCcccceEEEEcCC
Confidence 333 899999997 77788 47889999999999998 467777764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=253.65 Aligned_cols=229 Identities=14% Similarity=0.231 Sum_probs=190.6
Q ss_pred CcEEEeeeC---------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 141 GSLWIAHGG---------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 141 g~l~va~GG---------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
+.+|+ .|| .+++|| |.. ++++.+|..+++ +.+++.||++|| .++...++.+++||+.+
T Consensus 15 ~~i~~-~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~l~v~GG--~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 15 EVLLV-VGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS----VSLHDRIYVIGG--YDGRSRLSSVECLDYTA 87 (301)
T ss_dssp EEEEE-ECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEE----EEETTEEEEECC--BCSSCBCCCEEEEETTC
T ss_pred CEEEE-EeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccE----EEECCEEEEEcC--CCCCccCceEEEEECCC
Confidence 56774 455 289999 988 889999998844 458999999999 66777889999999999
Q ss_pred Cc---cccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE---
Q 012060 206 AH---WTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--- 277 (472)
Q Consensus 206 ~~---W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--- 277 (472)
++ |+.+++|+.+|..++ +++++++||+ ||.++ ..++++|+|||.+++ |+.+++|..++.
T Consensus 88 ~~~~~W~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGLAG-ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ------------WSMLGDMQTAREGAG 154 (301)
T ss_dssp CTTCCCEEECCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE------------EEEEEECSSCCBSCE
T ss_pred CCCCeeEECCCCCCCcccee-EEEECCEEEEEcccCCCcccceEEEEcCCCCe------------EEECCCCCCCcccce
Confidence 99 999999999999995 8899999999 88776 458999999999944 999998876654
Q ss_pred --ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 --PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 --~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++
T Consensus 155 ~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v 224 (301)
T 2vpj_A 155 LVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGH--WTNVTP--MATKRSGAGV-----ALLNDHIYVVGGFDGTAHLSSV 224 (301)
T ss_dssp EEEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBCCCE
T ss_pred EEEECCEEEEECCCCCCc-ccceEEEEeCCCCc--EEeCCC--CCcccccceE-----EEECCEEEEEeCCCCCcccceE
Confidence 3899999999987654 57899999999999 999988 5889999984 7789999999998865433233
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
..+. +++|+.+++ |+.+| ....+++++++||+.+| .+|++|+..
T Consensus 225 ~~yd~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 225 EAYNIRTDSWTTVTS----MTTPR-----CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EEEETTTTEEEEECC----CSSCC-----BSCEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred EEEeCCCCcEEECCC----CCCcc-----cceeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 3333 899999987 77777 47888999999999998 467777753
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=247.33 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=178.1
Q ss_pred CCcEEEeeeC-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 140 DGSLWIAHGG-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~GG-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++.||+.+|- .+++|| |.. ++|+.+|..+++ +++++.||++|| .++...++.+++|||.++
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG--~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA----AVLNGLLYAVGG--FDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE----EEETTEEEEEEE--ECSSCEEEEEEEEETTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEE----EEECCEEEEEcC--CCCCccCceEEEEeCCCC
Confidence 4678854441 289999 998 999999999854 458999999999 677778899999999999
Q ss_pred ccccCCCCcCcccceeEEEEeCCeEEE-EecCCC---CCceeEEEeCCCcccccccccccCCCcccccccceeEE-----
Q 012060 207 HWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPH---KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI----- 277 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~---~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~----- 277 (472)
+|+.+++|+.+|..++ +++++++||+ ||.++. .++.+|+|||.+++ |+.+++|..++.
T Consensus 135 ~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~~~ 201 (302)
T 2xn4_A 135 EWFHVAPMNTRRSSVG-VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE------------WTYIAEMSTRRSGAGVG 201 (302)
T ss_dssp EEEEECCCSSCCBSCE-EEEETTEEEEECCEETTTTEECCCEEEEETTTTE------------EEEECCCSSCCBSCEEE
T ss_pred eEeecCCCCCcccCce-EEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc------------EEECCCCccccccccEE
Confidence 9999999999999995 8999999999 887653 38999999999943 999998877654
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
..++.||+.||.++.. .++++++|||++++ |+..++ |..+|.++++ ++++++||++||.++.....++..
T Consensus 202 ~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~~~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v~~ 271 (302)
T 2xn4_A 202 VLNNLLYAVGGHDGPL-VRKSVEVYDPTTNA--WRQVAD--MNMCRRNAGV-----CAVNGLLYVVGGDDGSCNLASVEY 271 (302)
T ss_dssp EETTEEEEECCBSSSS-BCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBCCCEEE
T ss_pred EECCEEEEECCCCCCc-ccceEEEEeCCCCC--EeeCCC--CCCccccCeE-----EEECCEEEEECCcCCCcccccEEE
Confidence 3899999999987753 56799999999999 999998 5788998884 778999999999876533223332
Q ss_pred cC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEE
Q 012060 358 LG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQV 394 (472)
Q Consensus 358 ~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l 394 (472)
+. +++|+.+++ .|+.+| ++.++++++++|
T Consensus 272 yd~~~~~W~~~~~---~~~~~r-----~~~~~~~~~~~i 302 (302)
T 2xn4_A 272 YNPTTDKWTVVSS---CMSTGR-----SYAGVTVIDKRL 302 (302)
T ss_dssp EETTTTEEEECSS---CCSSCC-----BSCEEEEEEC--
T ss_pred EcCCCCeEEECCc---ccCccc-----ccceEEEecccC
Confidence 22 899999972 277888 588999998875
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=247.95 Aligned_cols=224 Identities=10% Similarity=0.071 Sum_probs=178.3
Q ss_pred cEEEeeeCceEEee-----cccCCC--CCccccccccceeeeeCCeEEEEcCcC----CCCceecceeeeecCCCCcccc
Q 012060 142 SLWIAHGGQISVYD-----WNLSHS--VTVRTHLDNITSIRHVWSDVAAVGSDY----SSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 142 ~l~va~GG~Ve~YD-----W~~~~m--~~~R~~~~~v~~v~~l~~~lYavGG~~----~~g~~~l~sve~ydp~t~~W~~ 210 (472)
.+++.+|..+++|| |..+++ +.+|.+++ ++++++.||++||.. .......+.+++|||.+++|+.
T Consensus 6 ~l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 6 LIFMISEEGAVAYDPAANECYCASLSSQVPKNHVS----LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEECCCCSCSSEEE----EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEEEcCCceEEECCCCCeEecCCCCCCCCccceE----EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 45644444599999 987444 55788874 445899999999931 1122345569999999999999
Q ss_pred CCCCcCcccceeEEEEeCCeEEE-EecC----CCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ecC
Q 012060 211 PSDPRIYRATVTAIADSPTTVFS-SLVC----PHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PAT 280 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~g~IYA-Gg~~----~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~~ 280 (472)
+++|+.+|..++ +++++++||+ ||.+ ...++.+++|||.+++ |+.+++|..+|. ..+
T Consensus 82 ~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~~~~~ 148 (315)
T 4asc_A 82 MPPLPSPRCLFG-LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK------------WGESDPLPYVVYGHTVLSHM 148 (315)
T ss_dssp CCCBSSCEESCE-EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE------------EEECCCCSSCCBSCEEEEET
T ss_pred CCCCCcchhcee-EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc------------EeECCCCCCcccceeEEEEC
Confidence 999999999995 9999999999 8854 3458999999999944 999999877754 389
Q ss_pred CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-
Q 012060 281 GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG- 359 (472)
Q Consensus 281 g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e- 359 (472)
++||+.||.+.....++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++..+.
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAP--MQTARSLFGA-----TVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCC--CCCchhceEE-----EEECCEEEEEeccCCCCccceEEEEEC
Confidence 9999999974333367899999999999 999998 5889999984 78899999999987654332333332
Q ss_pred -CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 360 -EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 360 -~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
+++|+.+++ |+.+| .+..+++++++||+.+|-
T Consensus 220 ~~~~W~~~~~----~p~~r-----~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 220 TDNKWAPFEA----FPQER-----SSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp TTTEEEEECC----CSSCC-----BSCEEEEETTEEEEEEEE
T ss_pred CCCeEEECCC----CCCcc-----cceeEEEECCEEEEECCc
Confidence 899999997 77888 578899999999999883
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=242.13 Aligned_cols=223 Identities=13% Similarity=0.146 Sum_probs=175.8
Q ss_pred CcEEEeeeCc-eEEee-----cccCCC--CCccccccccceeeeeCCeEEEEcCcCCC--Cc--eecceeeeecCCCCcc
Q 012060 141 GSLWIAHGGQ-ISVYD-----WNLSHS--VTVRTHLDNITSIRHVWSDVAAVGSDYSS--GI--HFYDLSSSRHVASAHW 208 (472)
Q Consensus 141 g~l~va~GG~-Ve~YD-----W~~~~m--~~~R~~~~~v~~v~~l~~~lYavGG~~~~--g~--~~l~sve~ydp~t~~W 208 (472)
+.+| +.||. +++|| |...++ +.+|.+++ ++.+++.||++||...+ +. ...+.+++|||.+++|
T Consensus 16 ~~i~-~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 16 DLIL-LVNDTAAVAYDPMENECYLTALAEQIPRNHSS----IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEE-EECSSEEEEEETTTTEEEEEEECTTSCSSEEE----EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred chhh-hccccceEEECCCCCceecccCCccCCccceE----EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4566 55654 99999 977333 46788774 44589999999993211 11 2234589999999999
Q ss_pred ccCCCCcCcccceeEEEEeCCeEEE-EecC--C-CCCceeEEEeCCCcccccccccccCCCcccccccceeEEe-----c
Q 012060 209 TDPSDPRIYRATVTAIADSPTTVFS-SLVC--P-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-----A 279 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~--~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-----~ 279 (472)
..+++|+.+|+.++ +++++++||+ ||.+ + ..++.+++|||.+++ |+.+++|..++.. .
T Consensus 91 ~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 91 VGLPPLPSARCLFG-LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK------------WSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EECSCBSSCBCSCE-EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE------------EEEECCCSSCEESCEEEEE
T ss_pred EECCCCCccccccc-eEEECCEEEEEcCccCCCCcccceEEEEeCCCCC------------EeECCCCCCcccccEEEEE
Confidence 99999999999995 9999999999 8875 2 358999999999944 9999998877653 8
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.||+.||.+.....++++++|||.+++ |+..++ |..+|.++++ ++.+++||++||.++.....++..+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAP--MKTPRSMFGV-----AIHKGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCC--CCCCcccceE-----EEECCEEEEEcCcCCCCccceEEEEE
Confidence 99999999874433357899999999999 999998 5889999985 77899999999987653322333332
Q ss_pred --CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 360 --EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 360 --~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
+++|+.+++ |+.+| ....+++++++||+.+|
T Consensus 229 ~~~~~W~~~~~----~p~~r-----~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 229 LKTNKWEVMTE----FPQER-----SSISLVSLAGSLYAIGG 261 (318)
T ss_dssp TTTCCEEECCC----CSSCC-----BSCEEEEETTEEEEECC
T ss_pred CCCCeEEECCC----CCCcc-----cceEEEEECCEEEEECC
Confidence 899999997 77778 47889999999999988
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=244.16 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=180.6
Q ss_pred cCCcEEEeeeC-----c--------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCC-CCceeccee
Q 012060 139 DDGSLWIAHGG-----Q--------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYS-SGIHFYDLS 198 (472)
Q Consensus 139 ~~g~l~va~GG-----~--------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~-~g~~~l~sv 198 (472)
.++.+|+.+|- . +++|| |.. ++|+.+|..++ ++++++.||++||... ++...++.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG----LGEALNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE----EEEETTEEEEECCEESSTTCCBCCCE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee----EEEECCEEEEEeCCcCCCCCcccceE
Confidence 34788866551 0 78899 988 99999999984 4458999999999421 356788999
Q ss_pred eeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecC-C-CCCceeEEEeCCCcccccccccccCCCccccccccee
Q 012060 199 SSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVC-P-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLT 275 (472)
Q Consensus 199 e~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~-~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~ 275 (472)
++|||.+++|+.+++|+.+|..++ +++++++||+ ||.+ . ..++.+++|||.+++ |+.+++|..+
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~ 186 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHT-VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE------------WKELAPMQTA 186 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCTTSCBCCCEEEEETTTTE------------EEECCCCSSC
T ss_pred EEECCCCCcEeECCCCCCccccee-EEEECCEEEEEeCCCCCCcccceEEEEeCCCCe------------EEECCCCCCc
Confidence 999999999999999999999995 8899999999 8873 3 458999999999944 9999998877
Q ss_pred EE-----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC-
Q 012060 276 WI-----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD- 349 (472)
Q Consensus 276 ~~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~- 349 (472)
|. ..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.
T Consensus 187 r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~l~v~GG~~~~~ 256 (315)
T 4asc_A 187 RSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNK--WAPFEA--FPQERSSLSL-----VSLVGTLYAIGGFATLE 256 (315)
T ss_dssp CBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEEEEEEEEE
T ss_pred hhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCe--EEECCC--CCCcccceeE-----EEECCEEEEECCccccC
Confidence 54 3899999999987653 57799999999999 999998 5899999985 7889999999997531
Q ss_pred -----c---ccccccccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC
Q 012060 350 -----I---AMADLRNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG 400 (472)
Q Consensus 350 -----~---~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~ 400 (472)
. ...|+..+. +++|+.+.+ .+| .++++++++++||+.+..
T Consensus 257 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~------~~r-----~~~~~~~~~~~l~v~~~~ 306 (315)
T 4asc_A 257 TESGELVPTELNDIWRYNEEEKKWEGVLR------EIA-----YAAGATFLPVRLNVLRLT 306 (315)
T ss_dssp CTTSCEEEEEEEEEEEEETTTTEEEEEES------CSS-----CCSSCEEEEEEECGGGSE
T ss_pred cCCccccccccCcEEEecCCCChhhhhcc------CCc-----CccceEEeCCEEEEEEeh
Confidence 1 111222222 899999954 556 367789999999998763
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=239.01 Aligned_cols=212 Identities=14% Similarity=0.148 Sum_probs=175.1
Q ss_pred CCcEEEeeeC-----------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 140 DGSLWIAHGG-----------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 140 ~g~l~va~GG-----------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
++.||+.+|- .+++|| |.. ++|+.+|..+++ ++++++||++|| .++...++.+++||
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG--~~~~~~~~~~~~yd 143 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV----GVIDGHIYAVGG--SHGCIHHNSVERYE 143 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE----EEETTEEEEECC--EETTEECCCEEEEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE----EEECCEEEEEcC--CCCCcccccEEEEC
Confidence 4678855442 188999 998 999999999854 458999999999 66777889999999
Q ss_pred CCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE---
Q 012060 203 VASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--- 277 (472)
Q Consensus 203 p~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--- 277 (472)
|.+++|+.+++|+.+|..++ +++++++||+ ||.++ ..++.+++|||.+++ |+.+++|..++.
T Consensus 144 ~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~ 210 (308)
T 1zgk_A 144 PERDEWHLVAPMLTRRIGVG-VAVLNRLLYAVGGFDGTNRLNSAECYYPERNE------------WRMITAMNTIRSGAG 210 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTTE------------EEECCCCSSCCBSCE
T ss_pred CCCCeEeECCCCCccccceE-EEEECCEEEEEeCCCCCCcCceEEEEeCCCCe------------EeeCCCCCCccccce
Confidence 99999999999999999995 8899999999 88776 458999999999944 999998877654
Q ss_pred --ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 --PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 --~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ |..+|.++++ ++++++||++||.++.....++
T Consensus 211 ~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v 280 (308)
T 1zgk_A 211 VCVLHNCIYAAGGYDGQD-QLNSVERYDVETET--WTFVAP--MKHRRSALGI-----TVHQGRIYVLGGYDGHTFLDSV 280 (308)
T ss_dssp EEEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCSSCBCCEE
T ss_pred EEEECCEEEEEeCCCCCC-ccceEEEEeCCCCc--EEECCC--CCCCccceEE-----EEECCEEEEEcCcCCCcccceE
Confidence 3899999999987653 46799999999999 999998 5889999985 7789999999998765433333
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
..+. +++|+.+++ |+.+| .+.++++
T Consensus 281 ~~yd~~~~~W~~~~~----~p~~r-----~~~~~~~ 307 (308)
T 1zgk_A 281 ECYDPDTDTWSEVTR----MTSGR-----SGVGVAV 307 (308)
T ss_dssp EEEETTTTEEEEEEE----CSSCC-----BSCEEEE
T ss_pred EEEcCCCCEEeecCC----CCCCc-----ccceeEe
Confidence 3333 899999998 77888 4666554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=240.40 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=177.7
Q ss_pred cCCcEEEeeeC---------c----eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceee
Q 012060 139 DDGSLWIAHGG---------Q----ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSS 199 (472)
Q Consensus 139 ~~g~l~va~GG---------~----Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve 199 (472)
.++.||+.+|- . +++|| |.. ++|+.+|..+++ ++++++||++||....+...++.++
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL----GEVDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE----EEETTEEEEEEEEBTTTCCEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce----EEECCEEEEEcCccCCCCcccceEE
Confidence 34788855551 1 78899 998 999999998844 4589999999994223567789999
Q ss_pred eecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC--CCCceeEEEeCCCcccccccccccCCCcccccccceeE
Q 012060 200 SRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW 276 (472)
Q Consensus 200 ~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~ 276 (472)
+||+.+++|+.+++|+.+|..++ +++.+++||+ ||.+. ..++.+++|||.+++ |+.+++|..++
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r 197 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD------------WKDLAPMKTPR 197 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTTTE------------EEEECCCSSCC
T ss_pred EEeCCCCCEeECCCCCCcccccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCCCE------------EEECCCCCCCc
Confidence 99999999999999999999996 8889999999 87643 358999999999944 99999987765
Q ss_pred E-----ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCc-
Q 012060 277 I-----PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDI- 350 (472)
Q Consensus 277 ~-----~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~- 350 (472)
. ..++.||+.||.++.. ..+++++|||.+++ |+..++ +..+|.++++ ++.+++||++||.++..
T Consensus 198 ~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~ 267 (318)
T 2woz_A 198 SMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNK--WEVMTE--FPQERSSISL-----VSLAGSLYAIGGFAMIQL 267 (318)
T ss_dssp BSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCC--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCCBC-
T ss_pred ccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCe--EEECCC--CCCcccceEE-----EEECCEEEEECCeeccCC
Confidence 4 3899999999987653 56799999999999 999988 5788999985 78899999999976421
Q ss_pred --------ccccccccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec
Q 012060 351 --------AMADLRNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR 398 (472)
Q Consensus 351 --------~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~ 398 (472)
...|+-.+. +++|+.+. +.+| .+.++++++++||+.+
T Consensus 268 ~~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~r-----~~~~~~~~~~~iyi~~ 314 (318)
T 2woz_A 268 ESKEFAPTEVNDIWKYEDDKKEWAGML------KEIR-----YASGASCLATRLNLFK 314 (318)
T ss_dssp ---CCBCCBCCCEEEEETTTTEEEEEE------SCCG-----GGTTCEEEEEEEEGGG
T ss_pred CCceeccceeeeEEEEeCCCCEehhhc------cccc-----ccccceeeCCEEEEEE
Confidence 112333222 89999983 3556 4677889999999864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=237.93 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=174.4
Q ss_pred CCcEEEeeeC------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCC-CceecceeeeecCCCC
Q 012060 140 DGSLWIAHGG------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSS-GIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~GG------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~-g~~~l~sve~ydp~t~ 206 (472)
++.||+.+|. .+++|| |.. ++|+.+|..+++ +++++.||++|| .+ +...++.+++|||.++
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~~~~iyv~GG--~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAA----CAAEGKIYTSGG--SEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEE----EEETTEEEEECC--BBTTBSCCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeE----EEECCEEEEECC--CCCCCcEeeeEEEEeCCCC
Confidence 4678844441 289999 998 999999999854 458999999999 55 6678899999999999
Q ss_pred ccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CC----CceeEEEeCCCcccccccccccCCCcccccccceeEE---
Q 012060 207 HWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HK----ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI--- 277 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~----l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~--- 277 (472)
+|+.+++|+.+|..++ +++++++||+ ||.++ .. ++.+|+|||.+++ |+.+++|..++.
T Consensus 129 ~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~------------W~~~~~~p~~r~~~~ 195 (306)
T 3ii7_A 129 SWHTKPSMLTQRCSHG-MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET------------WTELCPMIEARKNHG 195 (306)
T ss_dssp EEEEECCCSSCCBSCE-EEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE------------EEEECCCSSCCBSCE
T ss_pred ceEeCCCCcCCcceeE-EEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe------------EEECCCccchhhcce
Confidence 9999999999999995 8899999999 87655 33 8999999999943 999999877654
Q ss_pred --ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 --PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 --~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
..++.||+.||.++.. .++++++|||.+++ |+..++ +..+|.++++ ++++++||++||.++.....++
T Consensus 196 ~~~~~~~i~v~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~~ 265 (306)
T 3ii7_A 196 LVFVKDKIFAVGGQNGLG-GLDNVEYYDIKLNE--WKMVSP--MPWKGVTVKC-----AAVGSIVYVLAGFQGVGRLGHI 265 (306)
T ss_dssp EEEETTEEEEECCEETTE-EBCCEEEEETTTTE--EEECCC--CSCCBSCCEE-----EEETTEEEEEECBCSSSBCCEE
T ss_pred EEEECCEEEEEeCCCCCC-CCceEEEeeCCCCc--EEECCC--CCCCccceeE-----EEECCEEEEEeCcCCCeeeeeE
Confidence 3899999999987653 56799999999999 999988 5789999984 7889999999998765443333
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEEC
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCYK 391 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 391 (472)
..+. +++|..+++ |+.+|. +..++++.
T Consensus 266 ~~yd~~~~~W~~~~~----~~~~r~-----~~~~~~~~ 294 (306)
T 3ii7_A 266 LEYNTETDKWVANSK----VRAFPV-----TSCLICVV 294 (306)
T ss_dssp EEEETTTTEEEEEEE----EECCSC-----TTCEEEEE
T ss_pred EEEcCCCCeEEeCCC----cccccc-----eeEEEEEC
Confidence 3333 899999998 888884 55555543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=238.18 Aligned_cols=226 Identities=11% Similarity=0.028 Sum_probs=171.9
Q ss_pred CCcEEEeeeC----ceEEee-------ccc-CCCC-CccccccccceeeeeCCeEEEEcCc-C--CCCceecceeeeecC
Q 012060 140 DGSLWIAHGG----QISVYD-------WNL-SHSV-TVRTHLDNITSIRHVWSDVAAVGSD-Y--SSGIHFYDLSSSRHV 203 (472)
Q Consensus 140 ~g~l~va~GG----~Ve~YD-------W~~-~~m~-~~R~~~~~v~~v~~l~~~lYavGG~-~--~~g~~~l~sve~ydp 203 (472)
++.||+ .|| .+++|| |.. ++|+ .+|..++ +++++++||++||. . ..+...++.+++|||
T Consensus 19 ~~~iyv-~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYI-GLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQAT----SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TTEEEE-ECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCE----EEEETTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred CCEEEE-EeCcCCCeEEEEccccCCCCeeECCCCCCCcCccce----EEEECCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence 477885 454 389998 988 8999 8999884 44589999999993 1 113567899999999
Q ss_pred CCCccccCCCCc-CcccceeEEEEeCCeEEE-EecCCC-----------------------------------CCceeEE
Q 012060 204 ASAHWTDPSDPR-IYRATVTAIADSPTTVFS-SLVCPH-----------------------------------KENSVLL 246 (472)
Q Consensus 204 ~t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-Gg~~~~-----------------------------------~l~sVE~ 246 (472)
.+++|+.+++|. .+|..++ +++.+++||+ ||.++. .++.+|+
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHV-TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEE-EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCCcEEECCCCCCcccccce-EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 999999999999 9999985 7779999999 987642 3689999
Q ss_pred EeCCCcccccccccccCCCcccccccceeE------EecCCeEEEEEEeCCCccccceEEEEcC--CCCeeeeEEcCCCC
Q 012060 247 IDKSTLQISSEIGRQSGASSKNMAVGKLTW------IPATGVVLGSAIAWGAFGYSGYVRMWDP--RSGEVVWETNEPGS 318 (472)
Q Consensus 247 YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~------~~~~g~Lyv~Gg~~g~~~~~~sve~yDp--~~~~~vW~~~~~~~ 318 (472)
|||.+++ |+.+++|..++ ...++.||+.||.++.....+.+++||+ .+++ |+..++|.
T Consensus 173 yd~~~~~------------W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~ 238 (357)
T 2uvk_A 173 FDPSTQQ------------WSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVS 238 (357)
T ss_dssp EETTTTE------------EEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE--EEECCCSS
T ss_pred EeCCCCc------------EEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCC
Confidence 9999943 99998876432 2389999999987654324678999975 8899 99999975
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCCCcc--------------cccccccC-----CCCcEEeecCCCCcccCCCC
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSGDIA--------------MADLRNLG-----EDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~--------------~~dl~s~e-----~d~W~~~~~~~~~m~~~~~~ 379 (472)
..+.|.+++ +++.+++||++||.+.... ...+.+++ +++|+.+++ |+.+|
T Consensus 239 ~~~~~~~~~-----~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-- 307 (357)
T 2uvk_A 239 SPDGVAGGF-----AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGR-- 307 (357)
T ss_dssp TTTCCBSCE-----EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCC--
T ss_pred CCcccccce-----EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCc--
Confidence 456677776 4788999999999643210 11122333 899999998 77888
Q ss_pred CCCcCeEEEEECCEEEEecC
Q 012060 380 NNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 380 ~~~~~~~~~~~~g~l~~~~g 399 (472)
.+..+++++++||+.||
T Consensus 308 ---~~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 308 ---AYGVSLPWNNSLLIIGG 324 (357)
T ss_dssp ---BSSEEEEETTEEEEEEE
T ss_pred ---ccceeEEeCCEEEEEee
Confidence 46778899999999999
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=231.75 Aligned_cols=213 Identities=13% Similarity=0.096 Sum_probs=175.0
Q ss_pred CCcEEEeeeC-------ceEEee--------ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecC
Q 012060 140 DGSLWIAHGG-------QISVYD--------WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHV 203 (472)
Q Consensus 140 ~g~l~va~GG-------~Ve~YD--------W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp 203 (472)
++.+|+.+|- .+++|| |.. ++++.+|..+++ ++++++||++|| ..+...++.+++||+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~----~~~~~~lyv~GG--~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA----TTLGDMIYVSGG--FDGSRRHTSMERYDP 135 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE----EEETTEEEEECC--BCSSCBCCEEEEEET
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE----EEECCEEEEEcc--cCCCcccceEEEEcC
Confidence 4678854441 289999 888 999999999854 458999999999 667677899999999
Q ss_pred CCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE----
Q 012060 204 ASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI---- 277 (472)
Q Consensus 204 ~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~---- 277 (472)
.+++|+.+++|+.+|..++ +++++++||+ ||.++ ..++.+++|||.+++ |+.+++|..++.
T Consensus 136 ~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~p~~r~~~~~ 202 (301)
T 2vpj_A 136 NIDQWSMLGDMQTAREGAG-LVVASGVIYCLGGYDGLNILNSVEKYDPHTGH------------WTNVTPMATKRSGAGV 202 (301)
T ss_dssp TTTEEEEEEECSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTTE------------EEEECCCSSCCBSCEE
T ss_pred CCCeEEECCCCCCCcccce-EEEECCEEEEECCCCCCcccceEEEEeCCCCc------------EEeCCCCCcccccceE
Confidence 9999999999999999995 8899999999 88776 458999999999943 999998877654
Q ss_pred -ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 278 -PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 278 -~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
..++.||+.||.++.. .++++++|||++++ |+..++ |..+|.++++ ++++++||++||.++.....++.
T Consensus 203 ~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~--~p~~r~~~~~-----~~~~~~i~v~GG~~~~~~~~~v~ 272 (301)
T 2vpj_A 203 ALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDS--WTTVTS--MTTPRCYVGA-----TVLRGRLYAIAGYDGNSLLSSIE 272 (301)
T ss_dssp EEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEEECC--CSSCCBSCEE-----EEETTEEEEECCBCSSSBEEEEE
T ss_pred EEECCEEEEEeCCCCCc-ccceEEEEeCCCCc--EEECCC--CCCcccceeE-----EEECCEEEEEcCcCCCcccccEE
Confidence 3899999999987653 47799999999999 999988 5788999984 77899999999987653322333
Q ss_pred ccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEEE
Q 012060 357 NLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHCY 390 (472)
Q Consensus 357 s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~ 390 (472)
.+. +++|..+++ |+.+| ++.+++++
T Consensus 273 ~yd~~~~~W~~~~~----~~~~r-----~~~~~~~~ 299 (301)
T 2vpj_A 273 CYDPIIDSWEVVTS----MGTQR-----CDAGVCVL 299 (301)
T ss_dssp EEETTTTEEEEEEE----EEEEE-----ESCEEEEE
T ss_pred EEcCCCCeEEEcCC----CCccc-----ccceEEEe
Confidence 222 899999998 88888 46676665
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=224.23 Aligned_cols=203 Identities=11% Similarity=0.023 Sum_probs=156.1
Q ss_pred CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCC--CCccccCCCCc-CcccceeEEEEeCCeEEE-E
Q 012060 159 SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVA--SAHWTDPSDPR-IYRATVTAIADSPTTVFS-S 234 (472)
Q Consensus 159 ~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~--t~~W~~~a~m~-~~R~~~~ava~l~g~IYA-G 234 (472)
++||.+|.++. ++++++.||++|| .++ +.+++||+. +++|..+++|+ .+|..++ +++++++||+ |
T Consensus 4 ~~lP~~r~~~~----~~~~~~~iyv~GG--~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~-~~~~~~~lyv~G 72 (357)
T 2uvk_A 4 PETPVPFKSGT----GAIDNDTVYIGLG--SAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQAT-SAFIDGNLYVFG 72 (357)
T ss_dssp CCCSSCCCSCE----EEEETTEEEEECG--GGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCE-EEEETTEEEEEC
T ss_pred CCCCccccceE----EEEECCEEEEEeC--cCC----CeEEEEccccCCCCeeECCCCCCCcCccce-EEEECCEEEEEc
Confidence 78899998763 3457999999999 544 478999998 59999999999 8999995 8999999999 8
Q ss_pred ec-C---C--CCCceeEEEeCCCcccccccccccCCCcccccccc-eeEE-----ecCCeEEEEEEeCCCc---------
Q 012060 235 LV-C---P--HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK-LTWI-----PATGVVLGSAIAWGAF--------- 293 (472)
Q Consensus 235 g~-~---~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~-~~~~-----~~~g~Lyv~Gg~~g~~--------- 293 (472)
|. + + ..++.+++|||.+++ |+.+++|. .+|. ..+++||+.||.++..
T Consensus 73 G~~~~~~~~~~~~~~v~~yd~~~~~------------W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 140 (357)
T 2uvk_A 73 GIGKNSEGLTQVFNDVHKYNPKTNS------------WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLN 140 (357)
T ss_dssp CEEECTTSCEEECCCEEEEETTTTE------------EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCCCCccceeeccEEEEeCCCCc------------EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchh
Confidence 86 2 2 248999999999944 99999987 5542 3899999999976431
Q ss_pred ------------------------cccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 294 ------------------------GYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 294 ------------------------~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
..++++++|||.+++ |+..++| ...+|.++++ ++.+++||++||.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~-p~~~~~~~~~-----~~~~~~iyv~GG~~~~ 212 (357)
T 2uvk_A 141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ--WSYAGES-PWYGTAGAAV-----VNKGDKTWLINGEAKP 212 (357)
T ss_dssp HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE--EEEEEEC-SSCCCBSCEE-----EEETTEEEEECCEEET
T ss_pred hcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc--EEECCCC-CCCCcccccE-----EEECCEEEEEeeecCC
Confidence 135799999999999 9999885 2234555774 7889999999997643
Q ss_pred c-cccccccc----CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC
Q 012060 350 I-AMADLRNL----GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG 399 (472)
Q Consensus 350 ~-~~~dl~s~----e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g 399 (472)
. ...++..+ ++++|+.+++ |+.+|.. ....+++++++||+.+|
T Consensus 213 ~~~~~~v~~~d~d~~~~~W~~~~~----~~~~~~~---~~~~~~~~~~~iyv~GG 260 (357)
T 2uvk_A 213 GLRTDAVFELDFTGNNLKWNKLAP----VSSPDGV---AGGFAGISNDSLIFAGG 260 (357)
T ss_dssp TEECCCEEEEECC---CEEEECCC----SSTTTCC---BSCEEEEETTEEEEECC
T ss_pred CcccCceEEEEecCCCCcEEecCC----CCCCccc---ccceEEEECCEEEEEcC
Confidence 1 11123222 4789999998 5444421 46778999999999998
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=236.44 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=174.1
Q ss_pred CCcEEEeee------C-------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeee
Q 012060 140 DGSLWIAHG------G-------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSS 200 (472)
Q Consensus 140 ~g~l~va~G------G-------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ 200 (472)
++.||+.+| | .+++|| |.. +.|+.+|..++.. .++..+++||++|| +++ +.+++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~-~~~~~~g~lyv~GG--~~~----~~v~~ 269 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG-ISMDGNGQIVVTGG--NDA----KKTSL 269 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE-EEECTTSCEEEECS--SST----TCEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccc-ccCCCCCCEEEeCC--CCC----CceEE
Confidence 578886554 1 278899 988 8888888777532 12246899999999 444 27999
Q ss_pred ecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-Ee-cCC-CCCceeEEEeCCCcccccccccccCCCcccc-----cc
Q 012060 201 RHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SL-VCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNM-----AV 271 (472)
Q Consensus 201 ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg-~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-----~~ 271 (472)
|||.+++|+.+++|+.+|..++ ++++ +++||+ || .++ ..++++|+|||.+++ |+.+ +|
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s-~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~------------W~~~~~~~~~p 336 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQS-SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT------------WTSLPNAKVNP 336 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCE-EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE------------EEEETTSCSGG
T ss_pred ecCcCCceeECCCCCccccccc-eEEecCCeEEEEeCcccCCcccccceEeCCCCCc------------ceeCCCccccc
Confidence 9999999999999999999995 8888 999999 88 444 458999999999843 4443 11
Q ss_pred ccee-------------------------------------------------------------EE----ecCCeEEEE
Q 012060 272 GKLT-------------------------------------------------------------WI----PATGVVLGS 286 (472)
Q Consensus 272 m~~~-------------------------------------------------------------~~----~~~g~Lyv~ 286 (472)
|... .. ..+++||++
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 1110 11 248999999
Q ss_pred EEeCCCc--cccc---eEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec-CCeEEEEcccCCCccc---ccccc
Q 012060 287 AIAWGAF--GYSG---YVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD-ELTLFKICSKSGDIAM---ADLRN 357 (472)
Q Consensus 287 Gg~~g~~--~~~~---sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~-~~~iy~vGg~~g~~~~---~dl~s 357 (472)
||.++.. ..++ .|++|||.+++ |+......|..+|.++++ +++ +++||++||.+....+ ..+..
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~-----~~l~~g~i~v~GG~~~~~~~~~~~~~~~ 489 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTS-----VVLPDGSTFITGGQRRGIPFEDSTPVFT 489 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEE-----EECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCe-----EECCCCCEEEECCcccCcCcCCCCcccc
Confidence 9864321 1233 89999999999 998872226899999984 566 9999999997632110 11233
Q ss_pred cC-----CCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecCC----------eEEEeecccc
Q 012060 358 LG-----EDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRGG----------SLEVWSRVRE 410 (472)
Q Consensus 358 ~e-----~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g~----------~~~v~~~~~~ 410 (472)
++ +++|+.+++ |+.+| .+...+++ +|+||+.||+ .+|+|+++-+
T Consensus 490 v~~ydp~t~~W~~~~~----~~~~R-----~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Ppyl 550 (656)
T 1k3i_A 490 PEIYVPEQDTFYKQNP----NSIVR-----VYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL 550 (656)
T ss_dssp CEEEEGGGTEEEECCC----CSSCC-----CTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred eEEEcCCCCceeecCC----CCCcc-----ccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeChhh
Confidence 33 899999997 78888 47888888 9999999995 5788888755
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=230.01 Aligned_cols=230 Identities=9% Similarity=0.012 Sum_probs=167.5
Q ss_pred CCcEEEeeeCc-------eEEee-----ccc-C-C-----CCCccccccccceeeee--CCeEEEEcCcCCCCc-eecce
Q 012060 140 DGSLWIAHGGQ-------ISVYD-----WNL-S-H-----SVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGI-HFYDL 197 (472)
Q Consensus 140 ~g~l~va~GG~-------Ve~YD-----W~~-~-~-----m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~-~~l~s 197 (472)
++.||+ +||. +++|| |.. + + |+.+|..|+ ++++ ++.||++|| .++. ..++.
T Consensus 397 ~~~iyv-~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs----~~~~~~~~~lyv~GG--~~~~~~~~~d 469 (695)
T 2zwa_A 397 GNDVFY-MGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT----FTTISRNNQLLLIGG--RKAPHQGLSD 469 (695)
T ss_dssp SSCEEE-ECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE----EEEETTTTEEEEECC--BSSTTCBCCC
T ss_pred CCEEEE-ECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE----EEEEccCCEEEEEcC--CCCCCCcccc
Confidence 467885 4552 89999 987 6 5 789999984 4458 999999999 4443 37899
Q ss_pred eeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc---c
Q 012060 198 SSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV---G 272 (472)
Q Consensus 198 ve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~---m 272 (472)
+++||+.+++|+.+++|+.+|..++ ++++ +++||+ ||.++.. .+|+|||.+++ |+.+++ |
T Consensus 470 v~~yd~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~------------W~~~~~~g~~ 534 (695)
T 2zwa_A 470 NWIFDMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGP--AMLLYNVTEEI------------FKDVTPKDEF 534 (695)
T ss_dssp CEEEETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSC--SEEEEETTTTE------------EEECCCSSGG
T ss_pred EEEEeCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCC--CEEEEECCCCc------------eEEccCCCCC
Confidence 9999999999999999999999996 7776 999999 9887644 99999999943 999987 5
Q ss_pred ceeEEe-----cC---CeEEEEEEeCCCc-cccceEEEEcCCCCe----eeeEEcCCCCCCCCcccccccceeeeecC-C
Q 012060 273 KLTWIP-----AT---GVVLGSAIAWGAF-GYSGYVRMWDPRSGE----VVWETNEPGSGRSARFGDSFADVDVDVDE-L 338 (472)
Q Consensus 273 ~~~~~~-----~~---g~Lyv~Gg~~g~~-~~~~sve~yDp~~~~----~vW~~~~~~~~~~~R~~~~~~d~~v~~~~-~ 338 (472)
..++.. ++ +.||+.||.+... ..++++++|||.+++ +.|+...+| +..+|.++++ ++++ +
T Consensus 535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-p~~~R~~~~~-----~~~~~~ 608 (695)
T 2zwa_A 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-PLFQRYGSQI-----KYITPR 608 (695)
T ss_dssp GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-GGGCCBSCEE-----EEEETT
T ss_pred CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-CCCCcccceE-----EEeCCC
Confidence 555432 34 8999999974321 257899999999998 235666653 3588999985 6778 9
Q ss_pred eEEEEcccCCCcc---cccccccC--CCCcEEeecCCCCc---ccCCCCCCCcCeEEEEECC-EEEEecCCeE
Q 012060 339 TLFKICSKSGDIA---MADLRNLG--EDPWVYMEDKNPSM---ISSSGNNNGENKLIHCYKN-QVFVGRGGSL 402 (472)
Q Consensus 339 ~iy~vGg~~g~~~---~~dl~s~e--~d~W~~~~~~~~~m---~~~~~~~~~~~~~~~~~~g-~l~~~~g~~~ 402 (472)
+||++||.++... ..++..+. +++|+.+. .+... ..+.. .+..++++++ +||+.||+..
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~----~gh~~~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLML----AGFSLVSTSMGTIHIIGGGAT 676 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCC----SSCEEECC---CEEEECCEEE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccc----eeeeEEEeCCCEEEEEeCCcc
Confidence 9999999775432 11232222 89999543 11111 00111 3566666665 9999999765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=222.09 Aligned_cols=212 Identities=8% Similarity=-0.067 Sum_probs=166.1
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCC-C-----CcCcccceeEEEEe-
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS-D-----PRIYRATVTAIADS- 227 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a-~-----m~~~R~~~~ava~l- 227 (472)
|.. +..+.+|.++ ++++++.||++|| .++ ..++.+++|||.+++|+.++ + |+.+|.+++ ++++
T Consensus 379 ~~~~~~~p~rr~g~-----~~~~~~~iyv~GG--~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs-~~~~~ 449 (695)
T 2zwa_A 379 LLECECPINRKFGD-----VDVAGNDVFYMGG--SNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT-FTTIS 449 (695)
T ss_dssp EEECCCTTCCBSCE-----EEECSSCEEEECC--BSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE-EEEET
T ss_pred EeccCCCCCCceeE-----EEEECCEEEEECC--CCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE-EEEEc
Confidence 444 4555555543 2238999999999 666 78899999999999999988 5 899999996 8889
Q ss_pred -CCeEEE-EecCC-C-CCceeEEEeCCCcccccccccccCCCcccccccceeEEe-----c-CCeEEEEEEeCCCccccc
Q 012060 228 -PTTVFS-SLVCP-H-KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-----A-TGVVLGSAIAWGAFGYSG 297 (472)
Q Consensus 228 -~g~IYA-Gg~~~-~-~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-----~-~g~Lyv~Gg~~g~~~~~~ 297 (472)
+++||+ ||.+. . .++++++||+.+++ |+.+++|..+|.. + +++||+.||.++..
T Consensus 450 ~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~------------W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---- 513 (695)
T 2zwa_A 450 RNNQLLLIGGRKAPHQGLSDNWIFDMKTRE------------WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---- 513 (695)
T ss_dssp TTTEEEEECCBSSTTCBCCCCEEEETTTTE------------EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----
T ss_pred cCCEEEEEcCCCCCCCccccEEEEeCCCCc------------EEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----
Confidence 999999 88776 3 58999999999944 9999998877652 4 99999999976652
Q ss_pred eEEEEcCCCCeeeeEEcCCC-CCCCCcccccccceeeeecC---CeEEEEcccCCC--cccccccccC--CCC------c
Q 012060 298 YVRMWDPRSGEVVWETNEPG-SGRSARFGDSFADVDVDVDE---LTLFKICSKSGD--IAMADLRNLG--EDP------W 363 (472)
Q Consensus 298 sve~yDp~~~~~vW~~~~~~-~~~~~R~~~~~~d~~v~~~~---~~iy~vGg~~g~--~~~~dl~s~e--~d~------W 363 (472)
++++|||.+++ |+..++. .+..+|.+|+. ++++ ++||++||.+.+ ....++..+. +++ |
T Consensus 514 ~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a-----~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W 586 (695)
T 2zwa_A 514 AMLLYNVTEEI--FKDVTPKDEFFQNSLVSAG-----LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITV 586 (695)
T ss_dssp SEEEEETTTTE--EEECCCSSGGGGSCCBSCE-----EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEE
T ss_pred CEEEEECCCCc--eEEccCCCCCCCcccceeE-----EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEE
Confidence 89999999999 9999873 25789999983 5545 899999997533 2222333333 888 8
Q ss_pred EEeecCCCCc-ccCCCCCCCcCeEEEEEC-CEEEEecC----------CeEEEeecc
Q 012060 364 VYMEDKNPSM-ISSSGNNNGENKLIHCYK-NQVFVGRG----------GSLEVWSRV 408 (472)
Q Consensus 364 ~~~~~~~~~m-~~~~~~~~~~~~~~~~~~-g~l~~~~g----------~~~~v~~~~ 408 (472)
+.+.+ | ..+| .+..+++++ |+||+.|| .+|++|+..
T Consensus 587 ~~~~~----~p~~~R-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 587 IKKLQ----HPLFQR-----YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EEEEE----CGGGCC-----BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EEcCC----CCCCCc-----ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 88887 4 3667 578889999 99999998 347777764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-21 Score=209.47 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=154.8
Q ss_pred eEEee-----ccc-CCCCCccccccccceeeee--CCeEEEEcCcCCCCc------eecceeeeecCCCCccccCCCCcC
Q 012060 151 ISVYD-----WNL-SHSVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGI------HFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 151 Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~------~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
++.|| |.. +++|. ..++ ++++ +++||++||. +.. ..++.+++|||.+++|..+++|+.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~----~av~~~~g~l~v~GG~--~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~ 239 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAA----AAIEPTSGRVLMWSSY--RNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT 239 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSE----EEEETTTTEEEEEEEC--CCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC
T ss_pred cccCCCCCCeeeeeccCCC--Ccee----EEEEecCCEEEEEecc--cccccccCCCCeEEEEEEeCCCCcEEeCcccCC
Confidence 66777 987 77755 3332 2345 9999999994 321 234578999999999999999988
Q ss_pred ccccee-EEE-EeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----ec-CCeEEEEE
Q 012060 217 YRATVT-AIA-DSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----PA-TGVVLGSA 287 (472)
Q Consensus 217 ~R~~~~-ava-~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~~-~g~Lyv~G 287 (472)
+|..++ +++ ..+++||+ ||.+. +++++|||.+++ |+.+++|..+|. .+ +|+|||+|
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t~~------------W~~~~~~~~~R~~~s~~~~~dg~iyv~G 304 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDS------------WIPGPDMQVARGYQSSATMSDGRVFTIG 304 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTE------------EEECCCCSSCCSSCEEEECTTSCEEEEC
T ss_pred CCCCccccccCCCCCCEEEeCCCCC---CceEEecCcCCc------------eeECCCCCccccccceEEecCCeEEEEe
Confidence 886653 233 36899999 87654 389999999943 999999987764 25 99999999
Q ss_pred E-eCCCccccceEEEEcCCCCeeeeEEc-----CCCCCCCCcccc-----------------------------------
Q 012060 288 I-AWGAFGYSGYVRMWDPRSGEVVWETN-----EPGSGRSARFGD----------------------------------- 326 (472)
Q Consensus 288 g-~~g~~~~~~sve~yDp~~~~~vW~~~-----~~~~~~~~R~~~----------------------------------- 326 (472)
| .++.. .++++|+|||.+++ |+.. .|| ...|...
T Consensus 305 G~~~~~~-~~~~~e~yd~~t~~--W~~~~~~~~~p~--~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~ 379 (656)
T 1k3i_A 305 GSWSGGV-FEKNGEVYSPSSKT--WTSLPNAKVNPM--LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 379 (656)
T ss_dssp CCCCSSS-CCCCEEEEETTTTE--EEEETTSCSGGG--CCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred CcccCCc-ccccceEeCCCCCc--ceeCCCcccccc--ccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCc
Confidence 9 44433 56799999999999 9997 443 2222100
Q ss_pred ------------------cccceeee--ecCCeEEEEcccCC---CcccccccccC-----CCCcEEee--cCCCCcccC
Q 012060 327 ------------------SFADVDVD--VDELTLFKICSKSG---DIAMADLRNLG-----EDPWVYME--DKNPSMISS 376 (472)
Q Consensus 327 ------------------~~~d~~v~--~~~~~iy~vGg~~g---~~~~~dl~s~e-----~d~W~~~~--~~~~~m~~~ 376 (472)
..+-.+++ ..+++||++||.++ .....+..+++ +++|+.+. + |+.+
T Consensus 380 ~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----mp~~ 455 (656)
T 1k3i_A 380 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG----LYFA 455 (656)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC----CSSC
T ss_pred ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC----CCCC
Confidence 00001111 35899999999643 11111111332 88999987 5 8888
Q ss_pred CCCCCCcCeEEEEE-CCEEEEecC-------------CeEEEeecc
Q 012060 377 SGNNNGENKLIHCY-KNQVFVGRG-------------GSLEVWSRV 408 (472)
Q Consensus 377 ~~~~~~~~~~~~~~-~g~l~~~~g-------------~~~~v~~~~ 408 (472)
| .....+++ +|+||+.+| ..+|+|+..
T Consensus 456 R-----~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 456 R-----TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp C-----BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred c-----ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 8 46776776 999999998 357888874
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-21 Score=161.93 Aligned_cols=93 Identities=35% Similarity=0.568 Sum_probs=82.8
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
+.++.|+|||||++|.|+++||++ +|+++|.+||... .++++++||||||.+|++||+|+|+|+++++ ...+
T Consensus 3 ~~~~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p-~~~~ 80 (107)
T 3drz_A 3 SVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN-KDLA 80 (107)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTS-STTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCC-TTSC
T ss_pred CCCCEEEEEECCEEEEECHHHHhc-CCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCC-CCCC
Confidence 357899999999999999999999 8999999999753 2467899999999999999999999999976 4577
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
...|++||.||+|.++++.|.
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~ 101 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVK 101 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 889999999999999999885
|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=162.18 Aligned_cols=92 Identities=28% Similarity=0.446 Sum_probs=82.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.++.|+|||||++|.|+++||++ +|+++|.+||+.. .++.++|||||||.+|++||+|+|+|+|+++ .+.+...|
T Consensus 3 ~~~~V~LNVGG~~f~T~~~TL~~-~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p-~~~~~~~~ 80 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYP-TDVCGPLF 80 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTT-SCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCC-SSSCHHHH
T ss_pred CCCEEEEEECCEEEEecHHHHhc-CCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCC-CcccHHHH
Confidence 46799999999999999999999 8999999999753 4678999999999999999999999999986 45788999
Q ss_pred HhhhhhcCcchHH-hhhc
Q 012060 91 ADEALYYGIDSQL-KSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~-~~c~ 107 (472)
++||+||+|.+.. ..||
T Consensus 81 ~~Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 81 EEELEFWGLDSNQVEPCC 98 (115)
T ss_dssp HHHHHHHTCCGGGBCGGG
T ss_pred HHHHHHhCCChHHHHHHH
Confidence 9999999999955 5677
|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-20 Score=155.19 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=77.7
Q ss_pred CcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhcccc-CcccCCCCCcchHHHH
Q 012060 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRS-NRLPSTASRFSKQELA 91 (472)
Q Consensus 16 ~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrt-g~l~~~~~~~~v~~Ll 91 (472)
+.|+|||||++|.|+++||++ +|+++|.+|++.. .++++++||||||.+|++||+|+|| |+++++ ++.++..|+
T Consensus 1 ~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p-~~~~~~~~~ 78 (100)
T 1t1d_A 1 ERVVINVSGLRFETQLKTLNQ-FPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRP-VNVPLDVFS 78 (100)
T ss_dssp CEEEEEETTEEEEEEHHHHHT-STTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCC-TTSCHHHHH
T ss_pred CEEEEEECCEEEEeeHHHHhc-CCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCcccCC-CCCCHHHHH
Confidence 479999999999999999999 8999999998642 4578899999999999999999999 999976 457899999
Q ss_pred hhhhhcCcchHH
Q 012060 92 DEALYYGIDSQL 103 (472)
Q Consensus 92 ~eA~~~ql~~l~ 103 (472)
+||+||+|.+++
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999999965
|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=158.42 Aligned_cols=95 Identities=27% Similarity=0.523 Sum_probs=80.0
Q ss_pred CCCCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 10 PDRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 10 ~~~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
+.++.++.|+|||||++|.|+++||++ +|+++|.+. ... .+++++|||||||.+|++||+|||+|+|+++ .+.+
T Consensus 7 ~~~~~~~~V~LNVGG~~F~t~~~TL~~-~p~S~L~~~-~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p-~~~~ 83 (124)
T 1s1g_A 7 KNKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGST-EKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYP-RYEC 83 (124)
T ss_dssp -----CCEEEEEETTEEEEEEHHHHTT-STTSSTTSS-GGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCC-TTSC
T ss_pred CCCCCCCEEEEEeCCEEEEEeHHHHhc-CCCceeccc-CCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCCC-CCcC
Confidence 445688999999999999999999999 899999882 111 4678999999999999999999999999976 4468
Q ss_pred hHHHHhhhhhcCcchH-Hhhhc
Q 012060 87 KQELADEALYYGIDSQ-LKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l-~~~c~ 107 (472)
+..|++||+||+|.++ ++.||
T Consensus 84 ~~~l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 84 ISAYDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHHHHHHHTTCCGGGBCHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999997 47787
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-19 Score=158.47 Aligned_cols=95 Identities=27% Similarity=0.503 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 11 DRQNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 11 ~~~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.+..++.|+|||||++|.|+++||++ +|+++|.+.-... .+++++|||||||.+|++||||||+|+|+++ .+.++.
T Consensus 30 ~~~~~~~V~LNVGG~~F~T~~~TL~~-~P~S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p-~~~~~~ 107 (140)
T 2nz0_B 30 NKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYP-RYECIS 107 (140)
T ss_dssp CTTCCCEEEEEETTEEEEEEHHHHHT-CTTSTTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBCCC-TTSCHH
T ss_pred cCCCCCEEEEEECCEEEEeeHHHHhc-CCCeeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCC-CCcCHH
Confidence 34578899999999999999999999 8999999832111 4678999999999999999999999999976 457899
Q ss_pred HHHhhhhhcCcchH-Hhhhc
Q 012060 89 ELADEALYYGIDSQ-LKSAM 107 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l-~~~c~ 107 (472)
.|++||+||+|.++ ++.||
T Consensus 108 ~l~eEa~fy~i~~l~l~~CC 127 (140)
T 2nz0_B 108 AYDDELAFYGILPEIIGDCC 127 (140)
T ss_dssp HHHHHHHHHTCCGGGBCTTT
T ss_pred HHHHHHHHcCCChHHHHHHH
Confidence 99999999999997 57777
|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=152.13 Aligned_cols=89 Identities=27% Similarity=0.458 Sum_probs=77.5
Q ss_pred cEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHHHhhh
Q 012060 17 RVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADEA 94 (472)
Q Consensus 17 ~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~eA 94 (472)
.|+|||||++|.|+++||++ +|+++|.++-... .++++++||||||.+|++||+|+|+|+|+++ .+.++..|++||
T Consensus 1 ~V~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p-~~~~~~~l~~Ea 78 (105)
T 1nn7_A 1 LIVLNVSGTRFQTWQDTLER-YPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYP-RHECISAYDEEL 78 (105)
T ss_dssp CEEEEETTEEEEECHHHHHT-SCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCC-TTSCHHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhc-CCCccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCC-CCcCHHHHHHHH
Confidence 48999999999999999999 8999999842211 3577899999999999999999999999976 446889999999
Q ss_pred hhcCcchHH-hhhc
Q 012060 95 LYYGIDSQL-KSAM 107 (472)
Q Consensus 95 ~~~ql~~l~-~~c~ 107 (472)
+||+|.+++ +.||
T Consensus 79 ~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 79 AFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHTCCSCCBCHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 999999974 6777
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-19 Score=164.90 Aligned_cols=93 Identities=35% Similarity=0.568 Sum_probs=84.2
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC------CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcc
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ------SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~------~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
..++.|+|||||++|.|+++||++ +|+++|.+||... .++.++|||||||.+|++||+|||+|+|+++ +..+
T Consensus 9 ~~~~~V~LNVGG~~F~Tt~sTL~r-~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP-~~~~ 86 (202)
T 3drx_A 9 SVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN-KDLA 86 (202)
T ss_dssp CCCCEEEEEETTEEEEEETTGGGS-CTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCC-TTSC
T ss_pred CCCCEEEEEECCEEEEEeHHHHhC-CCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCC-CCCC
Confidence 467899999999999999999999 8999999999753 2467899999999999999999999999986 4577
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
...|++||.||+|.++++.|.
T Consensus 87 ~~~l~eEA~FygL~~Lv~~l~ 107 (202)
T 3drx_A 87 EEGVLEEAEFYNITSLIKLVK 107 (202)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHH
Confidence 889999999999999999986
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-15 Score=131.91 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=84.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||.....+..++.+ +.+++.|+.+|+|+|||++.++. .++.+|+
T Consensus 35 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~--~~v~~ll 110 (138)
T 2z8h_A 35 VLCDVTVLVEGQRFRAHRSVLAAC--SSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSK--DNVDEVC 110 (138)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCT--TTHHHHH
T ss_pred CCcCeEEEECCEEEechHHHHHHc--CHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCH--HHHHHHH
Confidence 346999999999999999999998 88999999865333445655 68999999999999999999876 8999999
Q ss_pred hhhhhcCcchHHhhhc--CCCCCCCC
Q 012060 92 DEALYYGIDSQLKSAM--SPPPLQGI 115 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~--l~~~l~~l 115 (472)
.+|.+||++.+++.|+ +..++...
T Consensus 111 ~~A~~~~i~~L~~~C~~~l~~~l~~s 136 (138)
T 2z8h_A 111 RCVEFLSVHNIEESCFQFLKFKFLDS 136 (138)
T ss_dssp HHHHHHTCGGGHHHHHHHTTCCCSCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999998 66666543
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-15 Score=130.60 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=78.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|+|+.|.+||.+|+++ |+||++||.... +.+|.+ |.+|++|+.+|+|+|||++.++. .++.+|+.
T Consensus 24 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~--~~v~~ll~ 97 (135)
T 2yy9_A 24 QYCDATLDVGGLVFKAHWSVLACC--SHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYTGHLALTS--GNRDQVLL 97 (135)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHH--CHHHHHTCC------CCEEECGGGHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred CCcceEEEECCEEEehHHHHHHHh--CHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCH--HHHHHHHH
Confidence 345999999999999999999998 889999998532 566765 89999999999999999999876 89999999
Q ss_pred hhhhcCcchHHhhhc--CCCCCC
Q 012060 93 EALYYGIDSQLKSAM--SPPPLQ 113 (472)
Q Consensus 93 eA~~~ql~~l~~~c~--l~~~l~ 113 (472)
+|++|||+.+++.|+ +...+.
T Consensus 98 ~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 98 AAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHTTCHHHHHHHHHCCC----
T ss_pred HHHHhCcHHHHHHHHHHHHHhcc
Confidence 999999999999998 444444
|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-15 Score=156.92 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=79.4
Q ss_pred CCCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhcccc-CcccCCCCCcchH
Q 012060 13 QNGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRS-NRLPSTASRFSKQ 88 (472)
Q Consensus 13 ~~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrt-g~l~~~~~~~~v~ 88 (472)
..++.|+|||||++|+|+++||++ +|+++|.+|+... .+++++|||||||.+|++||+|+|| |+++++ ++.+.+
T Consensus 49 ~~~~~v~lNVgG~~f~t~~~tL~~-~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p-~~~~~~ 126 (514)
T 2r9r_B 49 ESSERVVINISGLRFETQLKTLAQ-FPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRP-VNVPLD 126 (514)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTT-STTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCC-TTSCHH
T ss_pred CCCCEEEEEeCCEEEEecHHHHhc-CCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccC-CcccHH
Confidence 457899999999999999999999 8999999998643 4678999999999999999999999 999975 557899
Q ss_pred HHHhhhhhcCcchHH
Q 012060 89 ELADEALYYGIDSQL 103 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~ 103 (472)
.|++||+||+|.+..
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 999999999999965
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-15 Score=125.98 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=79.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+... +.++.+ |.+|++|+.+|+|+|||++.+++ .++++|+.
T Consensus 23 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~--~~v~~ll~ 96 (119)
T 3b84_A 23 QYCDATLDVGGLVFKAHWSVLACC--SHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFFYTGHLALTS--GNRDQVLL 96 (119)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTTT--CCCEEECGGGHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred CCcceEEEECCEEEEeeHHHHhhc--CHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHHcCCCCccCH--HHHHHHHH
Confidence 346999999999999999999998 889999998532 567765 89999999999999999999876 88999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|++||++.+.+.|.
T Consensus 97 ~A~~~~i~~L~~~C~ 111 (119)
T 3b84_A 97 AARELRVPEAVELCQ 111 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCcHHHHHHHH
Confidence 999999999999997
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-15 Score=127.47 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=80.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-c-CChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-D-RDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-D-rdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||.....+..++.+ | .+++.|+.+|+|+|||++.++. .++.+|+
T Consensus 31 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~--~~v~~ll 106 (125)
T 3ohu_A 31 ILCDVTLIVERKEFRAHRAVLAAC--SEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSR--ENIREVI 106 (125)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--BHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECT--TTHHHHH
T ss_pred CccceEEEECCEEEechHHHHHHc--CHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECH--HHHHHHH
Confidence 345999999999999999999998 88999999875444556665 6 9999999999999999999876 8999999
Q ss_pred hhhhhcCcchHHhhhc
Q 012060 92 DEALYYGIDSQLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~ 107 (472)
.+|.+||+..+++.|+
T Consensus 107 ~~A~~l~i~~L~~~C~ 122 (125)
T 3ohu_A 107 RCAEFLRMHNLEDSCF 122 (125)
T ss_dssp HHHHHHTBSSCTTSSC
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999999999999996
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-14 Score=125.58 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++. ++...++.+ |.+|+.|+.+|+|+|||++.++. .++.+|
T Consensus 24 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~--~~~~~l 99 (120)
T 2if5_A 24 LLCDVVILVEGREFPTHRSVLAAC--SQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVST--ANVGDI 99 (120)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCG--GGHHHH
T ss_pred CCCCeEEEECCEEEeHHHHHHHHh--CHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCH--HHHHHH
Confidence 456999999999999999999998 88999999865 445566655 79999999999999999999876 899999
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
+.+|.+|+++.+++.|.
T Consensus 100 l~~A~~~~i~~L~~~C~ 116 (120)
T 2if5_A 100 LSAARLLEIPAVSHVCA 116 (120)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999999996
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-14 Score=123.56 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=79.1
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE---cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI---DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi---Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+.. .+.++.+ |.+|++|+.+|+|+|||++.+++ .++.+|
T Consensus 21 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~--~~v~~l 94 (116)
T 2vpk_A 21 FLCDCTIVIGEFQFKAHRNVLASF--SEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS--WNVKEI 94 (116)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT--TTHHHH
T ss_pred CCCcEEEEECCEEEeccHHHHhhc--CHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCH--HHHHHH
Confidence 345999999999999999999998 88999999864 4566654 58999999999999999999876 899999
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
+.+|.+||++.+++.|.
T Consensus 95 l~~A~~~~i~~L~~~C~ 111 (116)
T 2vpk_A 95 HQAADYLKVEEVVTKCK 111 (116)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999999996
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-14 Score=125.57 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=80.5
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCC-CCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSD-EPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~-~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||+.... ...+|.+ +.+|++|+.+|+|+|||++.+++ .++.+|
T Consensus 28 ~~~Dv~l~v~~~~~~aHk~iLaa~--S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~--~~~~~l 103 (127)
T 1r29_A 28 ILTDVVIVVSREQFRAHKTVLMAC--SGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLRE--GNIMAV 103 (127)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT--TTHHHH
T ss_pred CCCCEEEEECCEEEehHHHHHHHh--CHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCH--HHHHHH
Confidence 446999999999999999999998 8899999986522 4566766 78999999999999999999876 899999
Q ss_pred HhhhhhcCcchHHhhhc
Q 012060 91 ADEALYYGIDSQLKSAM 107 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~ 107 (472)
+.+|.+|+++.+.+.|.
T Consensus 104 l~~A~~~~i~~L~~~c~ 120 (127)
T 1r29_A 104 MATAMYLQMEHVVDTCR 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999999996
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-15 Score=127.89 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++...+..++.+ +.+++.|+.+|+|+|||++.+++ .++.+|+
T Consensus 28 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~--~~v~~ll 103 (124)
T 2ihc_A 28 VLCDVTIFVEGQRFRAHRSVLAAC--SSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSK--ENVDEVC 103 (124)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--BHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEET--TTHHHHH
T ss_pred CCcCEEEEECCEEEecHHHHHHHc--CHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCH--HHHHHHH
Confidence 346999999999999999999998 88999999865333345655 78999999999999999999876 8999999
Q ss_pred hhhhhcCcchHHhhhc
Q 012060 92 DEALYYGIDSQLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~ 107 (472)
.+|.+||++.+++.|+
T Consensus 104 ~~A~~~~~~~L~~~C~ 119 (124)
T 2ihc_A 104 KCVEFLSVHNIEESCF 119 (124)
T ss_dssp HHHHHHTBSSCCGGGG
T ss_pred HHHHHHCCHHHHHHHH
Confidence 9999999999999997
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=123.96 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=78.9
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++ ...++.+ |.+|+.|+.+|+|+|||++.+++ .++.+++.
T Consensus 27 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~--~~~~~ll~ 99 (121)
T 1buo_A 27 TLCDVVIMVDSQEFHAHRTVLACT--SKMFEILFHR---NSQHYTLDFLSPKTFQQILEYAYTATLQAKA--EDLDDLLY 99 (121)
T ss_dssp TTCCEEEEESSCEEEECHHHHHHH--CHHHHHHTTS---CCSEEEECSSCHHHHHHHHHHHHHSCCCCCG--GGHHHHHH
T ss_pred CCCCEEEEECCEEEehhHHHHhhc--CHHHHHHHcC---CCcEEEeCCCCHHHHHHHHHhhcCCCcCCCH--HHHHHHHH
Confidence 446999999999999999999998 8899999985 3456655 89999999999999999999876 89999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|++||++.+.+.|.
T Consensus 100 ~A~~~~i~~L~~~c~ 114 (121)
T 1buo_A 100 AAEILEIEYLEEQCL 114 (121)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHHCCHHHHHHHH
Confidence 999999999999996
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-14 Score=119.64 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=78.1
Q ss_pred CCCcEEEEECC----eEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcc
Q 012060 14 NGDRVKLNVGG----KLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFS 86 (472)
Q Consensus 14 ~~~~V~LnVGG----~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~ 86 (472)
.-.||+|.|++ +.|++||.+|+++ |+||++||++. +.. .++.+ |.+|++|+.+|+|+|||++.+++ .+
T Consensus 7 ~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~--S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~--~~ 81 (109)
T 2vkp_A 7 LMADVHFVVGPPGATRTVPAHKYVLAVG--SSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA--DT 81 (109)
T ss_dssp TTCCEEEEESSTTSCEEEEECHHHHHHH--CHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT--TT
T ss_pred CcccEEEEECCCCCcEEEEeeHHHHHHc--CHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH--HH
Confidence 45699999999 9999999999998 88999999865 334 66766 89999999999999999999876 89
Q ss_pred hHHHHhhhhhcCcchHHhhhc
Q 012060 87 KQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 87 v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.+|+..|.+|+++.+.+.|.
T Consensus 82 ~~~ll~~A~~~~~~~L~~~c~ 102 (109)
T 2vkp_A 82 VLATLYAAKKYIVPALAKACV 102 (109)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHH
Confidence 999999999999999999996
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-14 Score=128.01 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=79.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||+.. +....+|.+ |.+|++|+.+|+|+|||++.++. .++.
T Consensus 46 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~--~~v~ 121 (144)
T 2ppi_A 46 RFCDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE--DTIQ 121 (144)
T ss_dssp CCCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT--TTHH
T ss_pred CCcceEEEECCEEEehHHHHHHHc--CHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH--HHHH
Confidence 345999999999999999999998 88999999753 234556665 89999999999999999999876 8999
Q ss_pred HHHhhhhhcCcchHHhhhc
Q 012060 89 ELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~ 107 (472)
+|+.+|.+||++.+++.|+
T Consensus 122 ~ll~~A~~l~i~~L~~~C~ 140 (144)
T 2ppi_A 122 DVVQAADLLLLTDLKTLCC 140 (144)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999997
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-14 Score=122.10 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.--||+|.|||+.|++||.+|+++ |+||++. ..++.+ |.+|+.|+.+|+|+|||++.++. .++++|+.
T Consensus 29 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~-------~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~--~~v~~ll~ 97 (119)
T 3m5b_A 29 ALCDTLITVGSQEFPAHSLVLAGV--SQQLGRR-------GQWALGEGISPSTFAQLLNFVYGESVELQP--GELRPLQE 97 (119)
T ss_dssp TTCCEEEEETTEEEEECHHHHHTT--CGGGCCC-------EEEECCSSCCHHHHHHHHHHHTTCCEEECG--GGHHHHHH
T ss_pred CCcceEEEECCEEEeeEHHHHHHc--CHHHhcC-------CCEEEeCCCCHHHHHHHHHHHcCCCcCcCH--HHHHHHHH
Confidence 345999999999999999999998 8899862 234544 89999999999999999999876 89999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|++||+..+++.|+
T Consensus 98 aA~~l~i~~l~~~C~ 112 (119)
T 3m5b_A 98 AARALGVQSLEEACW 112 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999997
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-14 Score=125.85 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE--cCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI--DRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi--Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||... ...++.+ |.+|+.|+.+|+|+|||++.++. .++..|+
T Consensus 32 ~~~Dv~l~v~~~~~~~Hk~vLaa~--S~~F~~~f~~~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~--~~~~~ll 105 (129)
T 3ga1_A 32 LYCDVSVVVKGHAFKAHRAVLAAS--SSYFRDLFNNS--RSAVVELPAAVQPQSFQQILSFCYTGRLSMNV--GDQDLLM 105 (129)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--BHHHHHHHHHC--CCSEEECCTTCCHHHHHHHHHHHHHSEEECCT--TTHHHHH
T ss_pred CCcceEEEECCEEEEehHHHHHHc--CHHHHHHHcCC--CCCEEEECCCCCHHHHHHHHHHHhCCccccCH--HHHHHHH
Confidence 345899999999999999999998 88999999853 5566766 69999999999999999999876 7899999
Q ss_pred hhhhhcCcchHHhhhc
Q 012060 92 DEALYYGIDSQLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~l~~~c~ 107 (472)
.+|.+||++.+++.|+
T Consensus 106 ~~A~~~~i~~l~~~C~ 121 (129)
T 3ga1_A 106 YTAGFLQIQEIMEKGT 121 (129)
T ss_dssp HHHHHTTBTTSSCC--
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999999999999997
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-14 Score=124.11 Aligned_cols=87 Identities=8% Similarity=0.121 Sum_probs=77.8
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||++ .+.++.+ +.+|+.|+.+|+|+|||++.++. .++.+|+.
T Consensus 26 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~--~~~~~ll~ 98 (119)
T 2q81_A 26 LLCDCTFVVDGVHFKAHKAVLAAC--SEYFKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSP--ENVDDVLA 98 (119)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHH---CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred CCcceEEEECCEEEehhHHHHHHc--CHHHHHHHcC---CCCEEEeCCCCHHHHHHHHHHHcCCCCccCH--HHHHHHHH
Confidence 346999999999999999999998 8899999985 3344544 67999999999999999999876 79999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
.|++||++.+++.|+
T Consensus 99 ~A~~l~i~~L~~~C~ 113 (119)
T 2q81_A 99 VATFLQMQDIITACH 113 (119)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999997
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-14 Score=124.37 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=80.3
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||+.. +....++.+ |.+|+.|+.+|+|+|||++.++. .++.++
T Consensus 24 ~~~Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~l 99 (145)
T 4eoz_A 24 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDL 99 (145)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGG--GTHHHH
T ss_pred CCcceEEEECCEEEEeehHHHHHc--CHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcH--HHHHHH
Confidence 346999999999999999999998 88999999864 334466755 89999999999999999999765 889999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCC
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQG 114 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~ 114 (472)
+..|.+|+++.+.+.|. +...+++
T Consensus 100 l~~A~~~~~~~l~~~c~~~l~~~l~~ 125 (145)
T 4eoz_A 100 LAAADKYALERLKVMCEDALCSNLSV 125 (145)
T ss_dssp HHHHHHTTCHHHHHHHHCC-------
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCH
Confidence 99999999999999998 4444444
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-13 Score=133.76 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=81.4
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQ 88 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~ 88 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+.. +....++.+ |.+|++|+.+|+|+|||++.++. .+++
T Consensus 30 ~~~Dv~l~v~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~--~~v~ 105 (256)
T 3hve_A 30 RFCDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE--DTIQ 105 (256)
T ss_dssp CCCCEEEEETTEEEEECHHHHHTT--CHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC---CCHH
T ss_pred CCcceEEEECCEEEechHHHHHHc--CHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH--hHHH
Confidence 446999999999999999999998 88999999864 234556665 89999999999999999999876 8999
Q ss_pred HHHhhhhhcCcchHHhhhc--CCCCCCCCc
Q 012060 89 ELADEALYYGIDSQLKSAM--SPPPLQGID 116 (472)
Q Consensus 89 ~Ll~eA~~~ql~~l~~~c~--l~~~l~~l~ 116 (472)
+++.+|.+||++.+.+.|+ +..++++.|
T Consensus 106 ~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n 135 (256)
T 3hve_A 106 DVVQAADLLLLTDLKTLCCEFLEGCIAAEN 135 (256)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence 9999999999999999998 555565543
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=126.05 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=84.6
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|++||.+|+++ |+||++||... +..+.++.+ |.+|+.|+.+|+|+|||++.++. .++.+|
T Consensus 33 ~~~Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~--~~~~~l 108 (172)
T 3htm_A 33 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDL 108 (172)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG--GTHHHH
T ss_pred CCcceEEEECCEEEEeeHHHHHHc--CHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH--HHHHHH
Confidence 345999999999999999999998 88999999864 445567765 89999999999999999999765 889999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCCC
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQGI 115 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~l 115 (472)
+..|.+|+++.+.+.|. +...++..
T Consensus 109 l~~A~~~~~~~l~~~c~~~l~~~l~~~ 135 (172)
T 3htm_A 109 LAAADKYALERLKVMCEDALCSNLSVE 135 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHH
Confidence 99999999999999997 44445543
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-13 Score=116.70 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=74.2
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcc-cCCCCCcchHHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRL-PSTASRFSKQELA 91 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l-~~~~~~~~v~~Ll 91 (472)
.-.||+|.|||+.|++||.+|+++ |+||++||+. ...++.+ +.+|+.|+.+|+|+|||++ .+++ .++.+|+
T Consensus 30 ~~~Dv~l~v~~~~f~aHk~vLaa~--S~~F~~~f~~---~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~--~~~~~ll 102 (116)
T 3fkc_A 30 LFCDVTVIVEDRKFRAHKNILSAS--STYFHQLFSV---AGQVVELSFIRAEIFAEILNYIYSSKIVRVRS--DLLDELI 102 (116)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHH--CHHHHHHTTS---CCSEEEECSSCHHHHHHHHHHHTTSCCCSCCH--HHHHHHH
T ss_pred CceeEEEEECCEEEehhHHHHHHc--CHHHHHHHcC---CCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCH--HHHHHHH
Confidence 345999999999999999999998 8899999985 2556655 8999999999999999999 5655 8999999
Q ss_pred hhhhhcCcchHHh
Q 012060 92 DEALYYGIDSQLK 104 (472)
Q Consensus 92 ~eA~~~ql~~l~~ 104 (472)
.+|++|||+.+.+
T Consensus 103 ~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 103 KSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHTCHHHHT
T ss_pred HHHHHhCccccCc
Confidence 9999999998764
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-13 Score=133.73 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCcEEEEEC---CeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-------cCChhhHHHHhhccccCcccCC
Q 012060 14 NGDRVKLNVG---GKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-------DRDPDVFSVLLSLLRSNRLPST 81 (472)
Q Consensus 14 ~~~~V~LnVG---G~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-------Drdp~~F~~IL~flrtg~l~~~ 81 (472)
.-.||+|.|| |+.|++||.+|+++ |+||++||++. ++.+.++.+ +.+|++|+.+|+|+|||++.++
T Consensus 31 ~~~Dv~l~v~~~~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~ 108 (279)
T 3i3n_A 31 LFCDITLCFGGAGGREFRAHRSVLAAA--TEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVS 108 (279)
T ss_dssp TTCCEEEECC----CEEEECHHHHHHH--CTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEE
T ss_pred CCCCeEEEEcCCCCeEEehHHHHHHHc--CHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccC
Confidence 3469999999 99999999999998 88999999875 555667765 7899999999999999999987
Q ss_pred CCCcchHHHHhhhhhcCcchHHhhhc--CCCCCCCCc
Q 012060 82 ASRFSKQELADEALYYGIDSQLKSAM--SPPPLQGID 116 (472)
Q Consensus 82 ~~~~~v~~Ll~eA~~~ql~~l~~~c~--l~~~l~~l~ 116 (472)
. .++.+|+.+|.+||++.+.+.|+ +..++++.|
T Consensus 109 ~--~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n 143 (279)
T 3i3n_A 109 T--GSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN 143 (279)
T ss_dssp T--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTT
T ss_pred H--HHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcch
Confidence 6 89999999999999999999998 444555433
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-12 Score=127.41 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=84.1
Q ss_pred CCCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHH
Q 012060 14 NGDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQEL 90 (472)
Q Consensus 14 ~~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~L 90 (472)
.-.||+|.|+|+.|.+||.+|+++ |+||++||.+. +....+|.+ |.+|+.|+.+|+|+|||++++.. .+++.|
T Consensus 173 ~~~Dv~l~v~~~~f~~Hk~vLaa~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~--~~~~~l 248 (312)
T 3hqi_A 173 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDL 248 (312)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHH--HHHHHH
T ss_pred CCCceEEEECCEEEeHHHHHHHHc--CHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChH--HHHHHH
Confidence 456999999999999999999998 88999999865 556677766 89999999999999999998765 789999
Q ss_pred HhhhhhcCcchHHhhhc--CCCCCCCCc
Q 012060 91 ADEALYYGIDSQLKSAM--SPPPLQGID 116 (472)
Q Consensus 91 l~eA~~~ql~~l~~~c~--l~~~l~~l~ 116 (472)
+.+|.+|+++.+.+.|. +...++..+
T Consensus 249 l~~A~~~~~~~l~~~c~~~l~~~~~~~n 276 (312)
T 3hqi_A 249 LAAADKYALERLKVMCEDALCSNLSVEN 276 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHccCCHHH
Confidence 99999999999999998 545555433
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=77.07 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=61.0
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccc-----c---Cccc---C
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLR-----S---NRLP---S 80 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flr-----t---g~l~---~ 80 (472)
|+|.- +|+.|++||.+ |++ |+||++||+.. +..+.+|-+ ++++.+++.|++|+| + +.++ +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~--S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALT--SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTT--SHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHH--hHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 55654 79999999999 776 88999999852 345667755 899999999999999 5 6776 6
Q ss_pred CCCCcchHHHHhhhhhcCc
Q 012060 81 TASRFSKQELADEALYYGI 99 (472)
Q Consensus 81 ~~~~~~v~~Ll~eA~~~ql 99 (472)
++ .++.+|+.+|+||+.
T Consensus 81 ~~--~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 AP--EIALELLMAANFLDC 97 (97)
T ss_dssp CG--GGHHHHHHHHHHHTC
T ss_pred CH--HHHHHHHHHHhhhCC
Confidence 55 889999999999973
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-07 Score=83.10 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=42.5
Q ss_pred CcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEE-EcCChhhHHHHhhccccCc----------------
Q 012060 16 DRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIF-IDRDPDVFSVLLSLLRSNR---------------- 77 (472)
Q Consensus 16 ~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vf-iDrdp~~F~~IL~flrtg~---------------- 77 (472)
..|+|.. +|+.|.+++.+ |++ |.+|+.||... ...++|- .++++.+++.|++|+++.+
T Consensus 4 ~~v~L~SsDg~~f~v~~~v-A~~--S~~ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 4 KKIVLKSSDGESFEVEEAV-ALE--SQTIAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp ----CCC---------CHH-HHT--CTTTC-------------CCTTSCHHHHHHHHHC---------------------
T ss_pred CEEEEEcCCCCEEEECHHH-HHH--hHHHHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 4578875 89999999998 555 88999999753 2334564 4899999999999999876
Q ss_pred -----------ccCCCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 78 -----------LPSTASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 78 -----------l~~~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.+. ...+.+|+.+|+||+|.+|++.||
T Consensus 80 ~~~i~~wD~~Fl~vd--~~~l~eLi~AAnyL~I~~Lldl~c 118 (160)
T 2p1m_A 80 DDDLKAWDADFMKID--QATLFELILAANYLNIKNLLDLTC 118 (160)
T ss_dssp -----------------------CHHHHHHTTCHHHHHHHH
T ss_pred cchhhHHHHHHHcCC--HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2332 267888999999999999999999
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=98.12 E-value=8.1e-07 Score=78.84 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=68.6
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCc------------------
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNR------------------ 77 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~------------------ 77 (472)
|+|.- +|+.|.+++.+ |+. |.+|+.|++.. . .++|-+ ++++.+++.|++|+++.+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~--S~~ik~ml~~~-~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQ--SVTIKTMLEDL-G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGT--CHHHHHHHHHT-C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHH--hHHHHHHHHhc-C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 77777 88999999998 555 88999999742 1 456755 999999999999998865
Q ss_pred --------ccCCCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 78 --------LPSTASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 78 --------l~~~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
+.+. ..++.+|+.+|+||+|.+|++.||
T Consensus 79 i~~wD~~F~~vd--~~~l~eLi~AAnyL~I~~Lldl~c 114 (141)
T 1fs1_B 79 IPVWDQEFLKVD--QGTLFELILAANYLDIKGLLDVTC 114 (141)
T ss_dssp --HHHHHHTCSC--HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHhCC--HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3332 367889999999999999999998
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00061 Score=69.18 Aligned_cols=258 Identities=16% Similarity=0.143 Sum_probs=133.3
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||... ........+-+.+.+++. ++.+++.|+ .+| ++..||..+.+-.. .+......+.+++..
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~--~dg-----~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~ 222 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGS--SDS-----TVRVWDVNTGEMLN--TLIHHCEAVLHLRFN 222 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEE--TTS-----CEEEEESSSCCEEE--EECCCCSCEEEEECC
T ss_pred CeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEc--CCC-----eEEEEECCCCcEEE--EEcCCCCcEEEEEEc
Confidence 4588887332 221122222333444444 888888888 555 45566666554222 222223334345555
Q ss_pred CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 228 PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 228 ~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
++.|++|+.+ .+|-.||..+.+.+.......+. ......+..++..+++|+. .+.|..||.+++
T Consensus 223 ~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~ 286 (435)
T 1p22_A 223 NGMMVTCSKD----RSIAVWDMASPTDITLRRVLVGH------RAAVNVVDFDDKYIVSASG------DRTIKVWNTSTC 286 (435)
T ss_dssp TTEEEEEETT----SCEEEEECSSSSCCEEEEEECCC------SSCEEEEEEETTEEEEEET------TSEEEEEETTTC
T ss_pred CCEEEEeeCC----CcEEEEeCCCCCCceeeeEecCC------CCcEEEEEeCCCEEEEEeC------CCeEEEEECCcC
Confidence 6656656554 47889999884422110000000 0111122235666666663 347999999999
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEE
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLI 387 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~ 387 (472)
+++.+..... ..+ .....++.++++|+.++....-|+++ ...+.. +.... .....
T Consensus 287 ~~~~~~~~~~--------~~v---~~~~~~~~~l~~g~~dg~i~iwd~~~-----~~~~~~----~~~h~-----~~v~~ 341 (435)
T 1p22_A 287 EFVRTLNGHK--------RGI---ACLQYRDRLVVSGSSDNTIRLWDIEC-----GACLRV----LEGHE-----ELVRC 341 (435)
T ss_dssp CEEEEEECCS--------SCE---EEEEEETTEEEEEETTSCEEEEETTT-----CCEEEE----ECCCS-----SCEEE
T ss_pred cEEEEEcCCC--------CcE---EEEEeCCCEEEEEeCCCeEEEEECCC-----CCEEEE----EeCCc-----CcEEE
Confidence 9887776541 111 12233677888999888755434443 223332 21111 12222
Q ss_pred EEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 388 HCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 388 ~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
...+++.+++++ |.|.+|+-..............-+.+.+ ..+.|..+++.|.+| ++=.+...|-||+-.
T Consensus 342 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~l-~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 342 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-----HSGRVFRLQFDEFQI-VSSSHDDTILIWDFL 413 (435)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-----CSSCCCCEEECSSCE-EECCSSSEEEEEC--
T ss_pred EEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-----CCCCeEEEEeCCCEE-EEEeCCCEEEEEECC
Confidence 333666666654 8899998653311111111111121222 355799999977665 455566789999853
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0025 Score=64.67 Aligned_cols=251 Identities=13% Similarity=0.110 Sum_probs=134.9
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||... ........+-+.+.+++ .++.+++.|+ .+| ++..||..+.+-.. .+......+.+++..
T Consensus 139 g~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~~--~dg-----~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~ 208 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRTLVGHTGGVWSSQ-MRDNIIISGS--TDR-----TLKVWNAETGECIH--TLYGHTSTVRCMHLH 208 (445)
T ss_dssp SCEEEEETTTCCEEEECCCCSSCEEEEE-EETTEEEEEE--TTS-----CEEEEETTTTEEEE--EECCCSSCEEEEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEE-ecCCEEEEEe--CCC-----eEEEEECCcCcEEE--EECCCCCcEEEEEec
Confidence 4588888443 22222222333343444 3566677777 454 45566766554222 122222333345565
Q ss_pred CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 228 PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 228 ~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
++.|++|+.+ .+|-.||..+.+++..+... ......+..++.++++|+.+ +.|..||++++
T Consensus 209 ~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 269 (445)
T 2ovr_B 209 EKRVVSGSRD----ATLRVWDIETGQCLHVLMGH---------VAAVRCVQYDGRRVVSGAYD------FMVKVWDPETE 269 (445)
T ss_dssp TTEEEEEETT----SEEEEEESSSCCEEEEEECC---------SSCEEEEEECSSCEEEEETT------SCEEEEEGGGT
T ss_pred CCEEEEEeCC----CEEEEEECCCCcEEEEEcCC---------cccEEEEEECCCEEEEEcCC------CEEEEEECCCC
Confidence 6666666544 47889999985543333210 01111223367777777744 46999999999
Q ss_pred eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEE
Q 012060 308 EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLI 387 (472)
Q Consensus 308 ~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~ 387 (472)
+++.+..... . .-.+ ++. ++..+++|+.++....-|+++ ...+.. +..... .-..+
T Consensus 270 ~~~~~~~~~~----~-~v~~-----~~~-~~~~l~~~~~d~~i~i~d~~~-----~~~~~~----~~~~~~----~v~~~ 325 (445)
T 2ovr_B 270 TCLHTLQGHT----N-RVYS-----LQF-DGIHVVSGSLDTSIRVWDVET-----GNCIHT----LTGHQS----LTSGM 325 (445)
T ss_dssp EEEEEECCCS----S-CEEE-----EEE-CSSEEEEEETTSCEEEEETTT-----CCEEEE----ECCCCS----CEEEE
T ss_pred cEeEEecCCC----C-ceEE-----EEE-CCCEEEEEeCCCeEEEEECCC-----CCEEEE----EcCCcc----cEEEE
Confidence 9888876441 0 1112 233 777788898887755434433 222222 111111 22344
Q ss_pred EEECCEEEEec-CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 388 HCYKNQVFVGR-GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 388 ~~~~g~l~~~~-g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
...++.|++.. +|.|.+|+-... .. -+.+-+. ....+.|+.+++.|+.|+..- +...|-||+...
T Consensus 326 ~~~~~~l~~~~~dg~i~vwd~~~~--------~~-~~~~~~~--~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~ 391 (445)
T 2ovr_B 326 ELKDNILVSGNADSTVKIWDIKTG--------QC-LQTLQGP--NKHQSAVTCLQFNKNFVITSS-DDGTVKLWDLKT 391 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTC--------CE-EEEECST--TSCSSCEEEEEECSSEEEEEE-TTSEEEEEETTT
T ss_pred EEeCCEEEEEeCCCeEEEEECCCC--------cE-EEEEccC--CCCCCCEEEEEECCCEEEEEe-CCCeEEEEECCC
Confidence 45555555554 488999986321 11 1111111 124567999999887666654 456799998543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0038 Score=63.29 Aligned_cols=254 Identities=12% Similarity=0.166 Sum_probs=131.2
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||+.. ........+-..+.+++ .++..+++|+ .+| ++..||..+.+-.. .+......+.+++.
T Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s--~dg-----~i~~wd~~~~~~~~--~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYGHTSTVRCMH-LHEKRVVSGS--RDA-----TLRVWDIETGQCLH--VLMGHVAAVRCVQY- 247 (445)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEE-EETTEEEEEE--TTS-----EEEEEESSSCCEEE--EEECCSSCEEEEEE-
T ss_pred CeEEEEECCcCcEEEEECCCCCcEEEEE-ecCCEEEEEe--CCC-----EEEEEECCCCcEEE--EEcCCcccEEEEEE-
Confidence 3477877543 22222222223333333 4566677777 454 45566665543221 11112223333444
Q ss_pred CCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 228 PTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 228 ~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
++. |++|+.+ ..|-.||+.+.+++.++.... .....+..++..+++|+.+ +.|..||.++
T Consensus 248 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~ 308 (445)
T 2ovr_B 248 DGRRVVSGAYD----FMVKVWDPETETCLHTLQGHT---------NRVYSLQFDGIHVVSGSLD------TSIRVWDVET 308 (445)
T ss_dssp CSSCEEEEETT----SCEEEEEGGGTEEEEEECCCS---------SCEEEEEECSSEEEEEETT------SCEEEEETTT
T ss_pred CCCEEEEEcCC----CEEEEEECCCCcEeEEecCCC---------CceEEEEECCCEEEEEeCC------CeEEEEECCC
Confidence 555 4446554 468899999866544443210 1111222367777777643 4699999999
Q ss_pred CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE
Q 012060 307 GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL 386 (472)
Q Consensus 307 ~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~ 386 (472)
++++++..... . .-.+ +.. .+.++++|+.++....-|+++ ...+...... .... ....
T Consensus 309 ~~~~~~~~~~~--~---~v~~-----~~~-~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~--~~~~----~~v~ 366 (445)
T 2ovr_B 309 GNCIHTLTGHQ--S---LTSG-----MEL-KDNILVSGNADSTVKIWDIKT-----GQCLQTLQGP--NKHQ----SAVT 366 (445)
T ss_dssp CCEEEEECCCC--S---CEEE-----EEE-ETTEEEEEETTSCEEEEETTT-----CCEEEEECST--TSCS----SCEE
T ss_pred CCEEEEEcCCc--c---cEEE-----EEE-eCCEEEEEeCCCeEEEEECCC-----CcEEEEEccC--CCCC----CCEE
Confidence 99888876541 0 0111 133 566777888887655434432 2233221111 0111 1233
Q ss_pred EEEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccce-----eEE
Q 012060 387 IHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEG-----IEV 459 (472)
Q Consensus 387 ~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~-----~~v 459 (472)
....+++.+++++ |.|.+|+-... +..+. +.........+.|..+++-.+..+++=-..+| +.|
T Consensus 367 ~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v 437 (445)
T 2ovr_B 367 CLQFNKNFVITSSDDGTVKLWDLKTG--------EFIRN-LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 437 (445)
T ss_dssp EEEECSSEEEEEETTSEEEEEETTTC--------CEEEE-EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCC--------ceeee-eeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEE
Confidence 3344555555543 78999985311 11122 21111123467899999987777655444444 889
Q ss_pred eecC
Q 012060 460 WESS 463 (472)
Q Consensus 460 w~~~ 463 (472)
|+=.
T Consensus 438 ~df~ 441 (445)
T 2ovr_B 438 LDFD 441 (445)
T ss_dssp EECC
T ss_pred EECC
Confidence 8743
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0013 Score=64.98 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=123.6
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
.||+.|+ .++ .+..||..+.+....-+... .+.+++.. +.+||+++.. .+.|.+||+.+.+++..
T Consensus 45 ~l~~~~~--~d~-----~i~v~d~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 45 KVYVANA--HSN-----DVSIIDTATNNVIATVPAGS---SPQGVAVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EEEEEEG--GGT-----EEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred EEEEECC--CCC-----eEEEEECCCCeEEEEEECCC---CccceEECCCCCEEEEEECC---CCEEEEEECCCCeEEEE
Confidence 4677776 333 56678877765443222222 22235554 3358884332 35799999999665444
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE 337 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~ 337 (472)
+.. .. .+....+.+-+..||+++. ..+.|..||++++++++..... ....+++....+
T Consensus 112 ~~~-----~~--~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~~~dg 169 (391)
T 1l0q_A 112 VKT-----GK--SPLGLALSPDGKKLYVTNN------GDKTVSVINTVTKAVINTVSVG---------RSPKGIAVTPDG 169 (391)
T ss_dssp EEC-----SS--SEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEECC---------SSEEEEEECTTS
T ss_pred EeC-----CC--CcceEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEEEecC---------CCcceEEECCCC
Confidence 433 11 1233444455566877754 2358999999999977766543 111233345567
Q ss_pred CeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec----CCeEEEeeccccc
Q 012060 338 LTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR----GGSLEVWSRVREG 411 (472)
Q Consensus 338 ~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~----g~~~~v~~~~~~~ 411 (472)
..||+.++.++.+..-|+++ ...+.. ..... .-..++.. +.+||+.. .+.|.+|+....
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~-----~~~~~~----~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~- 234 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVT-----NSVIDT----VKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN- 234 (391)
T ss_dssp SEEEEEETTTTEEEEEETTT-----TEEEEE----EECSS-----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-
T ss_pred CEEEEEeCCCCEEEEEECCC-----CeEEEE----EecCC-----CccceEECCCCCEEEEEecCcCCCcEEEEECCCC-
Confidence 78888888776654434432 222221 11111 11223332 34677774 589999986321
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCC
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
+..+. + + .+..+..+++- |.+||++-.+...|.||+...
T Consensus 235 -------~~~~~-~----~--~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 235 -------KITAR-I----P--VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -------EEEEE-E----E--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -------eEEEE-E----e--cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 11111 1 0 12246666665 889999977778899999653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0028 Score=63.50 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=141.7
Q ss_pred ceeeccCCcEEEeee--CceEEeeccc-CCCC-----Cccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCC
Q 012060 134 FTASSDDGSLWIAHG--GQISVYDWNL-SHSV-----TVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 134 ~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~-----~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
+...| ++.++++.+ +.|..||... .... ....+.+.+.++++ -++.+|+.|+ .++ .+..||+.
T Consensus 128 ~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~--~d~-----~v~~~d~~ 199 (433)
T 3bws_A 128 VRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM--QAN-----AVHVFDLK 199 (433)
T ss_dssp CEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG--GGT-----EEEEEETT
T ss_pred EEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC--CCC-----EEEEEECC
Confidence 33334 356664443 3488888332 1111 11122333333443 3678888887 333 56678876
Q ss_pred CCccccCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCe
Q 012060 205 SAHWTDPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGV 282 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~ 282 (472)
+.+....-... ...+.+++.. +..||+++.. ...|-+||+.+.+++..+.. .. .+....+.+-+..
T Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~---~~----~~~~~~~~~~g~~ 267 (433)
T 3bws_A 200 TLAYKATVDLT--GKWSKILLYDPIRDLVYCSNWI---SEDISVIDRKTKLEIRKTDK---IG----LPRGLLLSKDGKE 267 (433)
T ss_dssp TCCEEEEEECS--SSSEEEEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEECCC---CS----EEEEEEECTTSSE
T ss_pred CceEEEEEcCC--CCCeeEEEEcCCCCEEEEEecC---CCcEEEEECCCCcEEEEecC---CC----CceEEEEcCCCCE
Confidence 65432211111 1122235554 3458884322 24789999998654433322 10 1233334444556
Q ss_pred EEEEEEeCCCcc-ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCC
Q 012060 283 VLGSAIAWGAFG-YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGED 361 (472)
Q Consensus 283 Lyv~Gg~~g~~~-~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d 361 (472)
|++++..++... ..+.|..||++++++++....+. ....++....+..||+.++.++.+..-|++
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~----- 333 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---------NKRHIVSGNTENKIYVSDMCCSKIEVYDLK----- 333 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---------CEEEEEECSSTTEEEEEETTTTEEEEEETT-----
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---------CcceEEECCCCCEEEEEecCCCEEEEEECC-----
Confidence 766654333211 14689999999998776653331 111223355566899998877764433333
Q ss_pred CcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC----------------CeEEEeeccccccccccCCcceee
Q 012060 362 PWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG----------------GSLEVWSRVREGRNRSCSEGLFRR 423 (472)
Q Consensus 362 ~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g----------------~~~~v~~~~~~~~~~~~~~~~~r~ 423 (472)
.+..+.. +.... .-..++.. +..||+... |.|.+|+.... +. .+
T Consensus 334 ~~~~~~~----~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--------~~-~~ 395 (433)
T 3bws_A 334 EKKVQKS----IPVFD-----KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--------TV-KE 395 (433)
T ss_dssp TTEEEEE----EECSS-----SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--------EE-EE
T ss_pred CCcEEEE----ecCCC-----CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC--------cE-EE
Confidence 2333332 21111 12234433 346777765 38999986422 11 11
Q ss_pred ccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 424 NFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 424 ~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.+ + .+..|..+++ -|..|+++-.+...|.||+-.
T Consensus 396 ~~----~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FW----E--AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EE----E--CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred Ee----c--CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 11 1 1345777777 578899888777899999854
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0027 Score=63.08 Aligned_cols=236 Identities=15% Similarity=0.201 Sum_probs=127.6
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCc-------CcccceeEEEEeCCeEEEEecCCCCCcee
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPR-------IYRATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~-------~~R~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
.++.++.||+... ++ .+.+||+.+ ..|..-.+.. ...... ..++.++.||++..+ ..+
T Consensus 49 p~v~~~~v~~~~~---~g-----~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~----g~l 115 (376)
T 3q7m_A 49 PALADNVVYAADR---AG-----LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEK----AQV 115 (376)
T ss_dssp CEEETTEEEEECT---TS-----EEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETT----SEE
T ss_pred cEEECCEEEEEcC---CC-----eEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCC----CEE
Confidence 3457889998765 22 566777754 4476543221 112222 367788999995433 468
Q ss_pred EEEeCCCcccccccccccCCCcccccccce--eEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAVGKL--TWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~m~~--~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
-+||+.| |+ -.|+.-.+... .-...++.||+... .+.+.+||+++++++|+...+......
T Consensus 116 ~a~d~~t-------G~---~~W~~~~~~~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 116 YALNTSD-------GT---VAWQTKVAGEALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp EEEETTT-------CC---EEEEEECSSCCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----
T ss_pred EEEECCC-------CC---EEEEEeCCCceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceee
Confidence 8999999 44 33665433111 11235788888532 357999999999999998865211112
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcc-cCCCCCCCcCeEEEEECCEEEEec-CC
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMI-SSSGNNNGENKLIHCYKNQVFVGR-GG 400 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l~~~~-g~ 400 (472)
+.... .++.++.||+ |..++.+...|.++ +.-.|..-.+.+.... ..+- ........+.++.||+.. ++
T Consensus 179 ~~~~~-----~~~~~~~v~~-g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 179 RGESA-----PTTAFGAAVV-GGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRL--SDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp CCCCC-----CEEETTEEEE-CCTTTEEEEEETTT-CCEEEEEECCC-------------CCCCCCEEETTEEEEECTTS
T ss_pred cCCCC-----cEEECCEEEE-EcCCCEEEEEECCC-CcEEEEEecccCCCCcccccc--cccCCCcEEECCEEEEEecCc
Confidence 22222 2455788875 55555444333322 1334655332111000 0000 001233356789999986 57
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec--------cceeEEeecCC
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED--------VEGIEVWESSN 464 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~--------~~~~~vw~~~~ 464 (472)
.|-.++... .+.+.+.. -+....+..-++++|+.-.+ ..+-.+|+.+.
T Consensus 250 ~l~~~d~~t-------G~~~w~~~---------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 250 NLTALDLRS-------GQIMWKRE---------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp CEEEEETTT-------CCEEEEEC---------CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred EEEEEECCC-------CcEEeecc---------CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 777776521 12222321 12245566778888887654 35667888763
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0075 Score=61.08 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=102.3
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
+...+..|++|+.+ ..|-.||..+.+++..+... .-....+.+.+ ++..+++|+.+ +.|..||
T Consensus 276 ~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~-~~~~l~sg~~d------g~i~vwd 338 (464)
T 3v7d_B 276 VSGHGNIVVSGSYD----NTLIVWDVAQMKCLYILSGH------TDRIYSTIYDH-ERKRCISASMD------TTIRIWD 338 (464)
T ss_dssp EEEETTEEEEEETT----SCEEEEETTTTEEEEEECCC------SSCEEEEEEET-TTTEEEEEETT------SCEEEEE
T ss_pred EcCCCCEEEEEeCC----CeEEEEECCCCcEEEEecCC------CCCEEEEEEcC-CCCEEEEEeCC------CcEEEEE
Confidence 33334445556554 36889999986654443221 01112233443 45555666643 4699999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCc
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGE 383 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~ 383 (472)
.++++++.+..... .. |......+..++.|+.++....-|+++.+ ..-. ...... .
T Consensus 339 ~~~~~~~~~~~~h~--------~~---v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----~~~~----~~~~~~----~ 394 (464)
T 3v7d_B 339 LENGELMYTLQGHT--------AL---VGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFS----YHHTNL----S 394 (464)
T ss_dssp TTTTEEEEEECCCS--------SC---EEEEEECSSEEEEEETTSEEEEEETTTCC-----EEEE----EECTTC----C
T ss_pred CCCCcEEEEEeCCC--------Cc---EEEEEEcCCEEEEEeCCCcEEEEECCCCc-----eeee----ecCCCC----c
Confidence 99999888876541 11 11223356778888888775543444322 1111 111111 2
Q ss_pred CeEEEEECCEEEE-ecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccc--eeEEe
Q 012060 384 NKLIHCYKNQVFV-GRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVE--GIEVW 460 (472)
Q Consensus 384 ~~~~~~~~g~l~~-~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~--~~~vw 460 (472)
.......++++++ ..++.|.+|+-. +.++.++.+.+ ..+.|..+++=|++|+++=.+.. .+++|
T Consensus 395 ~~~~~~~~~~~l~~~~dg~i~iwd~~--------~g~~~~~~~~~-----~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 395 AITTFYVSDNILVSGSENQFNIYNLR--------SGKLVHANILK-----DADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEEEEECSSEEEEEETTEEEEEETT--------TCCEEESCTTT-----TCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cEEEEEeCCCEEEEecCCeEEEEECC--------CCcEEehhhcc-----CCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 3323344554444 456899999863 12223433333 35689999999999999876654 34444
Q ss_pred e
Q 012060 461 E 461 (472)
Q Consensus 461 ~ 461 (472)
+
T Consensus 462 d 462 (464)
T 3v7d_B 462 D 462 (464)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.029 Score=55.55 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=137.5
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
+.++++.+ |.|..||... ........+-+.+.++++. ++.+.+.|+ .+| ++..||..+.+ .+..+..
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~-----~i~iwd~~~~~--~~~~~~~ 179 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS--QDM-----QLKIWSVKDGS--NPRTLIG 179 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTCC--CCEEEEC
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe--CCC-----eEEEEeCCCCc--CceEEcC
Confidence 44443333 4588887432 2111112233334455543 566777777 454 45667765443 2222222
Q ss_pred cccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc-------------------ccee
Q 012060 217 YRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV-------------------GKLT 275 (472)
Q Consensus 217 ~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~-------------------m~~~ 275 (472)
....+.+++.. ++.+++ |+.+ .+|..||..+.+++..+....+. -..+.. ..+.
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLD----GTIRLWECGTGTTIHTFNRKENP-HDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETT----SCEEEEETTTTEEEEEECBTTBT-TCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCC----CcEEEeECCCCceeEEeecCCCC-CCCccEEEEecCCcceeeecccCcccceE
Confidence 23333345555 344444 6544 36889999987765555431100 000000 0111
Q ss_pred EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 276 WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 276 ~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
+. -++.++++|+.+ +.|..||.++++.+.+..... ...+..++....+..+++.|+.++.+..-|+
T Consensus 255 ~s-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 255 FG-TYGKYVIAGHVS------GVITVHNVFSKEQTIQLPSKF-------TCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp SS-CTTEEEEEEETT------SCEEEEETTTCCEEEEECCTT-------SSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred Ec-CCCCEEEEEcCC------CeEEEEECCCCceeEEccccc-------CCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 11 256666776643 469999999998777665431 1122222334434438888998877654455
Q ss_pred cccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccc---cCCcceeeccccccc
Q 012060 356 RNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRS---CSEGLFRRNFVDRVE 430 (472)
Q Consensus 356 ~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~---~~~~~~r~~~~~~~~ 430 (472)
++-+. +-..+.. .... .-..+...+++++++++ +.|.+|+-........ +....+ ++
T Consensus 321 ~~~~~-~~~~~~~------~~~~----~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~---~~---- 382 (420)
T 3vl1_A 321 RSPEC-PVGEFLI------NEGT----PINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF---LV---- 382 (420)
T ss_dssp TCTTS-CSEEEEE------STTS----CEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE---EC----
T ss_pred CCCcC-chhhhhc------cCCC----CceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccE---Ec----
Confidence 43221 1122221 0111 23344667888888765 7899998643211110 111110 11
Q ss_pred cCCCCceEEEee--cCc---eEEEeeeccceeEEeecCC
Q 012060 431 DSGRGAISRIDA--GGN---RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 431 ~~~~~~i~~~~~--gg~---r~f~~~~~~~~~~vw~~~~ 464 (472)
...+.|.++.+ -|. +|+++=++ ..+-+|....
T Consensus 383 -~~~~~v~~~~~s~~~~~~g~l~a~g~~-g~~~~~~~~~ 419 (420)
T 3vl1_A 383 -SNDDAVSQFCYVSDDESNGEVLEVGKN-NFCALYNLSN 419 (420)
T ss_dssp -CSSCCCCEEEEECCSSSSCEEEEEETT-TEEEEEESCC
T ss_pred -cCCcceEEEEEccCCCCcceEEEEcCC-ceEEEEeccC
Confidence 23445766664 444 66666544 5688888654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0031 Score=62.23 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=121.2
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+.+|+.|+ .++ .+..||..+.+-...-+... . +.+++.. ++ +||+ +..+ ..|..||+.+.+++
T Consensus 2 ~~l~vs~~--~d~-----~v~v~d~~~~~~~~~~~~~~--~-~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~~~~~ 67 (391)
T 1l0q_A 2 TFAYIANS--ESD-----NISVIDVTSNKVTATIPVGS--N-PMGAVISPDGTKVYVANAHS----NDVSIIDTATNNVI 67 (391)
T ss_dssp EEEEEEET--TTT-----EEEEEETTTTEEEEEEECSS--S-EEEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEE
T ss_pred CEEEEEcC--CCC-----EEEEEECCCCeEEEEeecCC--C-cceEEECCCCCEEEEECCCC----CeEEEEECCCCeEE
Confidence 45778877 343 56677776655332211111 1 1235554 33 5888 4332 47889999997655
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.. .. .+....+.+-+..||+++. ..+.|.+||+++++++...... . .+.+++...
T Consensus 68 ~~~~~---~~----~v~~~~~spdg~~l~~~~~------~~~~v~v~d~~~~~~~~~~~~~---~------~~~~~~~s~ 125 (391)
T 1l0q_A 68 ATVPA---GS----SPQGVAVSPDGKQVYVTNM------ASSTLSVIDTTSNTVAGTVKTG---K------SPLGLALSP 125 (391)
T ss_dssp EEEEC---SS----SEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEECS---S------SEEEEEECT
T ss_pred EEEEC---CC----CccceEECCCCCEEEEEEC------CCCEEEEEECCCCeEEEEEeCC---C------CcceEEECC
Confidence 44433 11 2233445555666777754 2357999999999977766543 1 122333455
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREG 411 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~ 411 (472)
.+..||+.++.++.+..-|++ +.+....- .... .-..++.. +.+||++. ++.|.+|+.-..
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~---~~~~~~~~------~~~~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~- 190 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTV---TKAVINTV------SVGR-----SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN- 190 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETT---TTEEEEEE------ECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred CCCEEEEEeCCCCEEEEEECC---CCcEEEEE------ecCC-----CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence 566788888877665443433 22222211 1111 11233332 34787764 367999976321
Q ss_pred cccccCCcceeeccccccccCCCCceEEEee--cCceEEEeee--ccceeEEeecC
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSRE--DVEGIEVWESS 463 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~--~~~~~~vw~~~ 463 (472)
+..+. +. ..+.+..+++ .|.+|+++-. ....|-||+..
T Consensus 191 -------~~~~~--~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 191 -------SVIDT--VK-----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp -------EEEEE--EE-----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred -------eEEEE--Ee-----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 11111 11 1234666555 5888999886 56788899854
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.02 Score=56.20 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=130.5
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcccc-CCCCcCcccceeEEEE-eCCeEEEEecCCCCCceeEEEeCC
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD-PSDPRIYRATVTAIAD-SPTTVFSSLVCPHKENSVLLIDKS 250 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~-~a~m~~~R~~~~ava~-l~g~IYAGg~~~~~l~sVE~YDp~ 250 (472)
+++.-++.+|++.. .+ +.+..+|+.+.+-.. ++....++ ++++ -+++||++.. ..++|-+||+.
T Consensus 48 ~i~~~~~~lyv~~~--~~-----~~v~viD~~t~~~~~~i~~~~~p~----~i~~~~~g~lyv~~~---~~~~v~~iD~~ 113 (328)
T 3dsm_A 48 SMVIRDGIGWIVVN--NS-----HVIFAIDINTFKEVGRITGFTSPR----YIHFLSDEKAYVTQI---WDYRIFIINPK 113 (328)
T ss_dssp EEEEETTEEEEEEG--GG-----TEEEEEETTTCCEEEEEECCSSEE----EEEEEETTEEEEEEB---SCSEEEEEETT
T ss_pred EEEEECCEEEEEEc--CC-----CEEEEEECcccEEEEEcCCCCCCc----EEEEeCCCeEEEEEC---CCCeEEEEECC
Confidence 34556889999875 22 468889998776522 33333333 3666 6789999421 13688999999
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
|.+....|....+.. ....|..+.. .++.|||+.. + ..+.|..||+++++++++.... ..+ .++
T Consensus 114 t~~~~~~i~~g~~~~-~~~~p~~i~~--~~~~lyv~~~--~---~~~~v~viD~~t~~~~~~i~~g---~~p---~~i-- 177 (328)
T 3dsm_A 114 TYEITGYIECPDMDM-ESGSTEQMVQ--YGKYVYVNCW--S---YQNRILKIDTETDKVVDELTIG---IQP---TSL-- 177 (328)
T ss_dssp TTEEEEEEECTTCCT-TTCBCCCEEE--ETTEEEEEEC--T---TCCEEEEEETTTTEEEEEEECS---SCB---CCC--
T ss_pred CCeEEEEEEcCCccc-cCCCcceEEE--ECCEEEEEcC--C---CCCEEEEEECCCCeEEEEEEcC---CCc---cce--
Confidence 977544333210000 0001222222 5899999842 1 2458999999999977776543 222 222
Q ss_pred eeeeecCCeEEEEcccC----------CCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec
Q 012060 331 VDVDVDELTLFKICSKS----------GDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR 398 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~----------g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~ 398 (472)
+..-+++||+++-.+ +.+...|.. +++....-. ..... .-..++.. ++.||++.
T Consensus 178 --~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~---t~~v~~~~~----~~~g~-----~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 178 --VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE---TFTVEKQFK----FKLGD-----WPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp --EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT---TTEEEEEEE----CCTTC-----CCEEEEECTTSCEEEEES
T ss_pred --EEcCCCCEEEEECCCccCCccccCCceEEEEECC---CCeEEEEEe----cCCCC-----CceeEEEecCCCEEEEEc
Confidence 233468899887532 122211211 232221111 11111 23456666 67899887
Q ss_pred CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEee----eccceeEEeecC
Q 012060 399 GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSR----EDVEGIEVWESS 463 (472)
Q Consensus 399 g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~----~~~~~~~vw~~~ 463 (472)
+ .|.+|+.... ++.++.++.. .++....|++ -+.+|||+- ..-..|-||+..
T Consensus 244 ~-~v~~~d~~t~--------~~~~~~~~~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 244 N-DIWRMPVEAD--------RVPVRPFLEF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S-SEEEEETTCS--------SCCSSCSBCC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred c-EEEEEECCCC--------ceeeeeeecC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 6 7777665311 1112222221 1456777877 478999997 667788898753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.02 Score=57.89 Aligned_cols=258 Identities=13% Similarity=0.089 Sum_probs=130.0
Q ss_pred CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
|.|..||... ........+-+.+.+++...+.+++.|+ .+| ++..||..+.+-.. .+......+.+++..
T Consensus 142 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s--~dg-----~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~ 212 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS--TDR-----TVRVWDIKKGCCTH--VFEGHNSTVRCLDIV 212 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEE--TTS-----CEEEEETTTTEEEE--EECCCSSCEEEEEEE
T ss_pred CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEe--CCC-----CEEEEECCCCcEEE--EECCCCCccEEEEEe
Confidence 4588888332 2222222333445556666555777777 455 45566666554222 121122233234444
Q ss_pred ---CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccc--------------cceeEEecCCeEEEEEEe
Q 012060 228 ---PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV--------------GKLTWIPATGVVLGSAIA 289 (472)
Q Consensus 228 ---~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--------------m~~~~~~~~g~Lyv~Gg~ 289 (472)
++.+.+ |+.+ .+|-.||..+.+...+.+...........+ .....+..++.++++|+.
T Consensus 213 ~~~~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 288 (464)
T 3v7d_B 213 EYKNIKYIVTGSRD----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288 (464)
T ss_dssp ESSSCEEEEEEETT----SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred cCCCCCEEEEEcCC----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC
Confidence 445445 6544 468899998855443332211000000000 011112234555666663
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecC
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDK 369 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~ 369 (472)
+ +.|..||.++++++.+.... ...+.+++... ++...++|+.++....-|+++ ...+..
T Consensus 289 d------~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-----~~~~~~- 347 (464)
T 3v7d_B 289 D------NTLIVWDVAQMKCLYILSGH--------TDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN-----GELMYT- 347 (464)
T ss_dssp T------SCEEEEETTTTEEEEEECCC--------SSCEEEEEEET-TTTEEEEEETTSCEEEEETTT-----TEEEEE-
T ss_pred C------CeEEEEECCCCcEEEEecCC--------CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----CcEEEE-
Confidence 3 46999999999988877654 12222222333 566777888887654333332 334443
Q ss_pred CCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceE
Q 012060 370 NPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRL 447 (472)
Q Consensus 370 ~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~ 447 (472)
+.... .......+.++.++++ .+.|.+|+-... +..+.- .......+..+...|..|
T Consensus 348 ---~~~h~-----~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~-------~~~~~~------~~~~~~~~~~~~~~~~~l 406 (464)
T 3v7d_B 348 ---LQGHT-----ALVGLLRLSDKFLVSAAADGSIRGWDANDY-------SRKFSY------HHTNLSAITTFYVSDNIL 406 (464)
T ss_dssp ---ECCCS-----SCEEEEEECSSEEEEEETTSEEEEEETTTC-------CEEEEE------ECTTCCCEEEEEECSSEE
T ss_pred ---EeCCC-----CcEEEEEEcCCEEEEEeCCCcEEEEECCCC-------ceeeee------cCCCCccEEEEEeCCCEE
Confidence 22222 1233333445444443 378999986422 111111 123344677888888877
Q ss_pred EEeeeccceeEEeecC
Q 012060 448 FVSREDVEGIEVWESS 463 (472)
Q Consensus 448 f~~~~~~~~~~vw~~~ 463 (472)
+..- ...|.||+..
T Consensus 407 ~~~~--dg~i~iwd~~ 420 (464)
T 3v7d_B 407 VSGS--ENQFNIYNLR 420 (464)
T ss_dssp EEEE--TTEEEEEETT
T ss_pred EEec--CCeEEEEECC
Confidence 7765 4689999854
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.036 Score=52.50 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=130.1
Q ss_pred cceeeccCCcEEEeee-CceEEeeccc-CCCCCcc-----ccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCC
Q 012060 133 TFTASSDDGSLWIAHG-GQISVYDWNL-SHSVTVR-----THLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 133 a~r~~~~~g~l~va~G-G~Ve~YDW~~-~~m~~~R-----~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
++...|. +.++++.+ |.|..||... ....... .+-..+.++++. ++..+++|+ .+| .+..||..
T Consensus 56 ~~~~~~~-~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~-----~i~~~d~~ 127 (337)
T 1gxr_A 56 AVTISNP-TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG--EAS-----TLSIWDLA 127 (337)
T ss_dssp EEEECSS-SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE--SSS-----EEEEEECC
T ss_pred EEEEecC-CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc--CCC-----cEEEEECC
Confidence 3444444 44442333 4587877433 2211111 122233344443 456667776 444 56677777
Q ss_pred CCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCe
Q 012060 205 SAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGV 282 (472)
Q Consensus 205 t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~ 282 (472)
+.+......+......+.+++.. ++. |++|+.+ ..|..||..+.+++..+... ......+.+.+ ++.
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~-~~~ 196 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSD----GNIAVWDLHNQTLVRQFQGH------TDGASCIDISN-DGT 196 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCC------SSCEEEEEECT-TSS
T ss_pred CCCcceeeecccCCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCceeeeeecc------cCceEEEEECC-CCC
Confidence 76644433333333333335554 344 4446544 36889999986644433220 00112233333 555
Q ss_pred EEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCC
Q 012060 283 VLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDP 362 (472)
Q Consensus 283 Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~ 362 (472)
++++++. .+.|..||.++++.+.+...+. . -.+ ++.. -++.++++|+.++....-|++.-+ .
T Consensus 197 ~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~----~--v~~---~~~s-~~~~~l~~~~~~~~i~~~~~~~~~--~ 258 (337)
T 1gxr_A 197 KLWTGGL------DNTVRSWDLREGRQLQQHDFTS----Q--IFS---LGYC-PTGEWLAVGMESSNVEVLHVNKPD--K 258 (337)
T ss_dssp EEEEEET------TSEEEEEETTTTEEEEEEECSS----C--EEE---EEEC-TTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred EEEEEec------CCcEEEEECCCCceEeeecCCC----c--eEE---EEEC-CCCCEEEEEcCCCcEEEEECCCCC--e
Confidence 5566553 3579999999999777664331 1 111 1122 366777888888765543443321 1
Q ss_pred cEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEE
Q 012060 363 WVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISR 439 (472)
Q Consensus 363 W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~ 439 (472)
. .+. .... .-..++.. ++++++++ ++.|.+|+-... +.++.. ...+.|..
T Consensus 259 ~-~~~-------~~~~----~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-------~~~~~~--------~~~~~v~~ 311 (337)
T 1gxr_A 259 Y-QLH-------LHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-------ASIFQS--------KESSSVLS 311 (337)
T ss_dssp E-EEC-------CCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEE--------ECSSCEEE
T ss_pred E-EEc-------CCcc----ceeEEEECCCCCEEEEecCCCcEEEEECCCC-------eEEEEe--------cCCCcEEE
Confidence 1 111 1110 11222222 34444443 488999986422 111111 13557888
Q ss_pred Eeec--CceEEEeeeccceeEEee
Q 012060 440 IDAG--GNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 440 ~~~g--g~r~f~~~~~~~~~~vw~ 461 (472)
+++- |..|++ =.+...|.||+
T Consensus 312 ~~~s~~~~~l~~-~~~dg~i~iw~ 334 (337)
T 1gxr_A 312 CDISVDDKYIVT-GSGDKKATVYE 334 (337)
T ss_dssp EEECTTSCEEEE-EETTSCEEEEE
T ss_pred EEECCCCCEEEE-ecCCCeEEEEE
Confidence 8875 444444 44556788997
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.044 Score=52.62 Aligned_cols=224 Identities=11% Similarity=0.092 Sum_probs=118.4
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEEe-C-CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcc-----c
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P-TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSK-----N 268 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~-g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~-----~ 268 (472)
..+..+|+.+.+-...-+.... -.+ ++.. + ++||++... .+.|.+||+.+.+++..+... ..+. .
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~~--~~~-~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~ 140 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDLK--PFG-ATINNTTQTLWFGNTV---NSAVTAIDAKTGEVKGRLVLD--DRKRTEEVRP 140 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESSC--CCS-EEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEEESC--CCCCCSSCCC
T ss_pred ccEEEEcCCCCeEEEEEecCCC--cce-EEECCCCCEEEEEecC---CCEEEEEeCCCCeeEEEEecC--CCccccccCC
Confidence 4677778776653332221111 111 4443 3 458884322 348999999996654444331 1111 0
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCC
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSG 348 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g 348 (472)
..+....+.+-++.||+++.. ..+.|..||+++++++++..... .....++....+..||+... ++
T Consensus 141 ~~~~~~~~s~dg~~l~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~~~~~-~~ 206 (353)
T 3vgz_A 141 LQPRELVADDATNTVYISGIG-----KESVIWVVDGGNIKLKTAIQNTG--------KMSTGLALDSEGKRLYTTNA-DG 206 (353)
T ss_dssp CEEEEEEEETTTTEEEEEEES-----SSCEEEEEETTTTEEEEEECCCC--------TTCCCCEEETTTTEEEEECT-TS
T ss_pred CCCceEEECCCCCEEEEEecC-----CCceEEEEcCCCCceEEEecCCC--------CccceEEECCCCCEEEEEcC-CC
Confidence 112224455566778887642 13479999999999888876331 11122334666777887654 44
Q ss_pred CcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeeccccccccccCCcceeec
Q 012060 349 DIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRN 424 (472)
Q Consensus 349 ~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~ 424 (472)
.+...|+.+ ...+.. ......+....-..++.. +++||++.. +.|.+|+.... ++.++-
T Consensus 207 ~i~~~d~~~-----~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------~~~~~~ 269 (353)
T 3vgz_A 207 ELITIDTAD-----NKILSR----KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--------NILAKV 269 (353)
T ss_dssp EEEEEETTT-----TEEEEE----EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--------CEEEEE
T ss_pred eEEEEECCC-----CeEEEE----EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--------cEEEEE
Confidence 433323322 222221 111000000122345554 567998854 78999976321 111221
Q ss_pred cccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 425 FVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 425 ~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
-++. +.-..++--|++||++-.+...|-||+...
T Consensus 270 ~~~~------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 270 AAPE------SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp ECSS------CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EcCC------CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 1111 122455667889999998889999998643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0036 Score=63.44 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=113.2
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccC-CCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP-SDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~-a~m~~ 216 (472)
+.++++++ |.|..||... ....+...+...+.+++. ++..++.|+ .+| ++..||..+.+-... ..+..
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s--~dg-----~i~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCS--KDR-----SIAVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC-CTTEEEEEE--TTS-----CEEEEECSSSSCCEEEEEECC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE-cCCEEEEee--CCC-----cEEEEeCCCCCCceeeeEecC
Confidence 44443333 4588888543 222222223333434444 566677777 454 455666554431100 11111
Q ss_pred cccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 217 YRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
....+.+++.-+..|++|+.+ ..|-.||..+.+++..+.... .....+..++.++++|+.+
T Consensus 255 ~~~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~~g~~d------ 315 (435)
T 1p22_A 255 HRAAVNVVDFDDKYIVSASGD----RTIKVWNTSTCEFVRTLNGHK---------RGIACLQYRDRLVVSGSSD------ 315 (435)
T ss_dssp CSSCEEEEEEETTEEEEEETT----SEEEEEETTTCCEEEEEECCS---------SCEEEEEEETTEEEEEETT------
T ss_pred CCCcEEEEEeCCCEEEEEeCC----CeEEEEECCcCcEEEEEcCCC---------CcEEEEEeCCCEEEEEeCC------
Confidence 223333355544455556554 478899999966544443210 1112223356667777643
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC----CCCcEEeecCCCC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG----EDPWVYMEDKNPS 372 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e----~d~W~~~~~~~~~ 372 (472)
+.|..||.++++++.+..... .. |.....++..+++|+.+|....-|++.-+ ......+..
T Consensus 316 g~i~iwd~~~~~~~~~~~~h~--------~~---v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~---- 380 (435)
T 1p22_A 316 NTIRLWDIECGACLRVLEGHE--------EL---VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT---- 380 (435)
T ss_dssp SCEEEEETTTCCEEEEECCCS--------SC---EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE----
T ss_pred CeEEEEECCCCCEEEEEeCCc--------Cc---EEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheee----
Confidence 469999999999887776441 11 11223378888899999876654554433 111112322
Q ss_pred cccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccc
Q 012060 373 MISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVR 409 (472)
Q Consensus 373 m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~ 409 (472)
+..... .=..++. +++.+++++ |.|.+|+-..
T Consensus 381 ~~~h~~----~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 381 LVEHSG----RVFRLQF-DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp ECCCSS----CCCCEEE-CSSCEEECCSSSEEEEEC---
T ss_pred ccCCCC----CeEEEEe-CCCEEEEEeCCCEEEEEECCC
Confidence 111111 1122333 666666655 8899998643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.027 Score=55.08 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=114.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCc--cccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAH--WTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~--W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
++...+.|| .++ .+..||..+.. ......+......+.++... ++.|++|+.+ .+|-.||..+.++
T Consensus 108 ~~~~l~s~~--~d~-----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d----~~i~~wd~~~~~~ 176 (340)
T 1got_B 108 SGNYVACGG--LDN-----ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD----TTCALWDIETGQQ 176 (340)
T ss_dssp TSSEEEEEE--TTC-----EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETT----SCEEEEETTTTEE
T ss_pred CCCEEEEEe--CCC-----eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECC----CcEEEEECCCCcE
Confidence 566777777 454 34556654432 11111111111222224443 4555555443 4688999998654
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
+..+... ......+.+.+ ++.++++|+.+ ++|..||.++++++-+.... ...+..++..
T Consensus 177 ~~~~~~h------~~~v~~~~~~~-~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~~h--------~~~v~~v~~~ 235 (340)
T 1got_B 177 TTTFTGH------TGDVMSLSLAP-DTRLFVSGACD------ASAKLWDVREGMCRQTFTGH--------ESDINAICFF 235 (340)
T ss_dssp EEEECCC------SSCEEEEEECT-TSSEEEEEETT------SCEEEEETTTCSEEEEECCC--------SSCEEEEEEC
T ss_pred EEEEcCC------CCceEEEEECC-CCCEEEEEeCC------CcEEEEECCCCeeEEEEcCC--------cCCEEEEEEc
Confidence 4333210 01112233333 56677777744 46999999999866666544 1112122223
Q ss_pred ecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEE-ECCEEEEecC--CeEEEeecccc
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHC-YKNQVFVGRG--GSLEVWSRVRE 410 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~-~~g~l~~~~g--~~~~v~~~~~~ 410 (472)
. ++.+++.|+.++....-|+++-. .+.. ...... .... .++. -+|+++++++ +.|.||+-...
T Consensus 236 p-~~~~l~s~s~d~~v~iwd~~~~~-----~~~~----~~~~~~---~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 236 P-NGNAFATGSDDATCRLFDLRADQ-----ELMT----YSHDNI---ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTE-----EEEE----ECCTTC---CSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred C-CCCEEEEEcCCCcEEEEECCCCc-----EEEE----EccCCc---ccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 3 67788899998876544554321 1111 001110 0111 1221 2456666544 78999985422
Q ss_pred ccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEee
Q 012060 411 GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 411 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
.. -+.+-+ ..+.|..+++--| +++++=..-..|-||+
T Consensus 303 --------~~-~~~~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 --------DR-AGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------CE-EEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------cE-eeEeec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 11 111222 3457988888644 4556666667788995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.009 Score=58.46 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=83.8
Q ss_pred ccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCC-----------CcCcccceeEEEEeC--CeEEE-
Q 012060 170 NITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSD-----------PRIYRATVTAIADSP--TTVFS- 233 (472)
Q Consensus 170 ~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~-----------m~~~R~~~~ava~l~--g~IYA- 233 (472)
.+.++++. ++.+++.|+ .+| .+..||..+.+...... +......+.+++... +.+++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~--~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGG--SDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CEEEEEECTTTCCEEEEEE--TTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred cEEEEEEecCCCCEEEEEc--CCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 34344443 567777777 454 35556655544322211 011223333455543 33444
Q ss_pred EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEe--cCCeEEEEEEeCCCccccceEEEEcCCCCeeee
Q 012060 234 SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP--ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVW 311 (472)
Q Consensus 234 Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~--~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW 311 (472)
++.+ ..|-.||..+.+++..+.... ......+.+ .++.++++|+.+ +.|..||.++++.+.
T Consensus 118 ~~~d----~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 118 SSFD----KTLKVWDTNTLQTADVFNFEE-------TVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSH 180 (408)
T ss_dssp EETT----SEEEEEETTTTEEEEEEECSS-------CEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCE
T ss_pred EeCC----CeEEEeeCCCCccceeccCCC-------ceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceee
Confidence 6543 478899999865443333200 001122222 245566776643 469999999998777
Q ss_pred EEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 312 ETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 312 ~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
+.... ...+..++....+..|+++|+.++....-|++..
T Consensus 181 ~~~~~--------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 181 ILQGH--------RQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EECCC--------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred eecCC--------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence 66644 1222233344545558999999887665566543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.016 Score=57.77 Aligned_cols=262 Identities=18% Similarity=0.145 Sum_probs=133.8
Q ss_pred CceEEeeccc-----CCCCCccccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccc-----cCCCCcC
Q 012060 149 GQISVYDWNL-----SHSVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWT-----DPSDPRI 216 (472)
Q Consensus 149 G~Ve~YDW~~-----~~m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~-----~~a~m~~ 216 (472)
|.|..||... ......+.+-+.+.++++. ++.+++.|+ .+| ++..||..+.... .+..+..
T Consensus 57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s--~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS--EDC-----TVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE--TTS-----EEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe--CCC-----eEEEEEccCCCCccccCCceEEecC
Confidence 4588887432 1222223344455555554 567888887 455 4566776655431 2222222
Q ss_pred cccceeEEEEeCC--eEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCc
Q 012060 217 YRATVTAIADSPT--TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAF 293 (472)
Q Consensus 217 ~R~~~~ava~l~g--~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~ 293 (472)
....+.+++...+ .+++ |+.+ .+|-.||..+.+++..+... -+......+.|.+ ++.++++|+.
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~---- 196 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCD----NVILVWDVGTGAAVLTLGPD----VHPDTIYSVDWSR-DGALICTSCR---- 196 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETT----SCEEEEETTTTEEEEEECTT----TCCSCEEEEEECT-TSSCEEEEET----
T ss_pred CCCeEEEEEECcCCCCEEEEEcCC----CEEEEEECCCCCccEEEecC----CCCCceEEEEECC-CCCEEEEEec----
Confidence 2233334555543 3555 6554 46889999997655554200 0111123344444 5555666653
Q ss_pred cccceEEEEcCCCCeeeeEE-cCCCCCCCCcccccccceeeeecCCeEEEEc---ccCCCcccccccccCCCCcEEeecC
Q 012060 294 GYSGYVRMWDPRSGEVVWET-NEPGSGRSARFGDSFADVDVDVDELTLFKIC---SKSGDIAMADLRNLGEDPWVYMEDK 369 (472)
Q Consensus 294 ~~~~sve~yDp~~~~~vW~~-~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG---g~~g~~~~~dl~s~e~d~W~~~~~~ 369 (472)
.+.|..||+++++++.+. ... ...+ +..++.. -++.++++| +.++.+..-|+++.+. +-....
T Consensus 197 --d~~i~iwd~~~~~~~~~~~~~~---~~~~----~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~~-- 263 (402)
T 2aq5_A 197 --DKRVRVIEPRKGTVVAEKDRPH---EGTR----PVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEE-PLSLQE-- 263 (402)
T ss_dssp --TSEEEEEETTTTEEEEEEECSS---CSSS----CCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSS-CSEEEE--
T ss_pred --CCcEEEEeCCCCceeeeeccCC---CCCc----ceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccC-CceEEe--
Confidence 357999999999988777 333 1111 1111123 367888787 5565544334443221 011111
Q ss_pred CCCcccCCCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc
Q 012060 370 NPSMISSSGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN 445 (472)
Q Consensus 370 ~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~ 445 (472)
+.... .-..++.. +..||+++ ++.|.+|+-... +..++. +-.. ...+.|..+++-.|
T Consensus 264 ---~~~~~-----~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~-------~~~~~~-l~~~---~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 264 ---LDTSS-----GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE-------APFLHY-LSMF---SSKESQRGMGYMPK 324 (402)
T ss_dssp ---CCCCS-----SCEEEEEETTTTEEEEEETTCSCEEEEEECSS-------TTCEEE-EEEE---CCSSCCSEEEECCG
T ss_pred ---ccCCC-----ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC-------CcceEe-eccc---ccCCcccceEEecc
Confidence 11111 12223333 34677665 588999986422 100011 0011 13457888888877
Q ss_pred eEEEeeeccceeEEeecC
Q 012060 446 RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 446 r~f~~~~~~~~~~vw~~~ 463 (472)
+.++.-.++ .+-+|+-.
T Consensus 325 ~~~~~s~~~-~~~~~~l~ 341 (402)
T 2aq5_A 325 RGLEVNKCE-IARFYKLH 341 (402)
T ss_dssp GGSCGGGTE-EEEEEEEE
T ss_pred cccceecce-eEEEEEcC
Confidence 766665554 67778743
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.011 Score=56.85 Aligned_cols=220 Identities=12% Similarity=0.149 Sum_probs=115.9
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcc-------cceeEEEEe--CCeEEEEecCCCCCceeEEEeCC
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYR-------ATVTAIADS--PTTVFSSLVCPHKENSVLLIDKS 250 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R-------~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~ 250 (472)
.+|+.+. .++ .+..||+.+.+-...-+..... ....+++.. +++||++... ....|.+||+.
T Consensus 102 ~l~v~~~--~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~i~~~d~~ 172 (353)
T 3vgz_A 102 TLWFGNT--VNS-----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGG 172 (353)
T ss_dssp EEEEEET--TTT-----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--SSCEEEEEETT
T ss_pred EEEEEec--CCC-----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--CCceEEEEcCC
Confidence 4787766 332 5678888766532211111100 011124443 3468884321 13568999999
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
+.+.+..+.. . ...+....+.+-++.||++.. .+.|..||+.+++++|+...+. ..+ .+...+
T Consensus 173 ~~~~~~~~~~---~---~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~--~~~--~~~~~~ 235 (353)
T 3vgz_A 173 NIKLKTAIQN---T---GKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLD--DGK--EHFFIN 235 (353)
T ss_dssp TTEEEEEECC---C---CTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCC--SSS--CCCEEE
T ss_pred CCceEEEecC---C---CCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCC--CCC--Ccccce
Confidence 9765544431 0 011334455566677887632 3578899999999888877531 101 111223
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeecc
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~ 408 (472)
++....++.||+.+..++.+...|+. +.+....-+ .... ....+.--+++||++. ++.|.+|+..
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~---~~~~~~~~~------~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTR---NGNILAKVA------APES----LAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETT---TCCEEEEEE------CSSC----CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECC---CCcEEEEEE------cCCC----ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 34566677899887655544433332 222222111 1111 1222222245699886 4889999763
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeec
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSRED 453 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~ 453 (472)
.. ++.+. + ..++.+..+++ -|.+|||+..+
T Consensus 303 ~~--------~~~~~-~------~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 303 SY--------KVVKT-F------DTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TT--------EEEEE-E------ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CC--------eEEEE-E------ecCCCCCeEEEcCCCCEEEEEEcc
Confidence 21 11111 1 12335676766 57889999876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.016 Score=56.93 Aligned_cols=215 Identities=11% Similarity=0.015 Sum_probs=117.0
Q ss_pred cceeeeecCCCCccccCC-----CCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccc
Q 012060 195 YDLSSSRHVASAHWTDPS-----DPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNM 269 (472)
Q Consensus 195 l~sve~ydp~t~~W~~~a-----~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v 269 (472)
-.++..|||.+.++..-- ......... +++..+++||+.... .++|.++|+.|.+.+..|.. . .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~-~i~~~~~~lyv~~~~---~~~v~viD~~t~~~~~~i~~---~----~ 84 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQ-SMVIRDGIGWIVVNN---SHVIFAIDINTFKEVGRITG---F----T 84 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEE-EEEEETTEEEEEEGG---GTEEEEEETTTCCEEEEEEC---C----S
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccce-EEEEECCEEEEEEcC---CCEEEEEECcccEEEEEcCC---C----C
Confidence 357889999998875421 000011112 377789999994332 46899999999775555521 0 1
Q ss_pred cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCC
Q 012060 270 AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSG 348 (472)
Q Consensus 270 ~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g 348 (472)
.|..+.. .-++.||++.. ..+.|..||+.+++++++............-.++ +..+++||+..- .++
T Consensus 85 ~p~~i~~-~~~g~lyv~~~------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i-----~~~~~~lyv~~~~~~~ 152 (328)
T 3dsm_A 85 SPRYIHF-LSDEKAYVTQI------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQM-----VQYGKYVYVNCWSYQN 152 (328)
T ss_dssp SEEEEEE-EETTEEEEEEB------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCE-----EEETTEEEEEECTTCC
T ss_pred CCcEEEE-eCCCeEEEEEC------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceE-----EEECCEEEEEcCCCCC
Confidence 1211111 14679999864 2358999999999988776533100000112333 347999998863 344
Q ss_pred CcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecCC------------eEEEeeccccccccc
Q 012060 349 DIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRGG------------SLEVWSRVREGRNRS 415 (472)
Q Consensus 349 ~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g~------------~~~v~~~~~~~~~~~ 415 (472)
.+...|+. +++....-+ ... .-.++++ -+|++|++..+ .|.+|+.-..
T Consensus 153 ~v~viD~~---t~~~~~~i~------~g~-----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----- 213 (328)
T 3dsm_A 153 RILKIDTE---TDKVVDELT------IGI-----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----- 213 (328)
T ss_dssp EEEEEETT---TTEEEEEEE------CSS-----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-----
T ss_pred EEEEEECC---CCeEEEEEE------cCC-----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-----
Confidence 43333333 232222111 111 0112332 35788888653 5777765311
Q ss_pred cCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeec
Q 012060 416 CSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 416 ~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~ 462 (472)
++.++ + .-..+.....+++- |++||++-. .|-+|+.
T Consensus 214 ---~v~~~-~----~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~ 251 (328)
T 3dsm_A 214 ---TVEKQ-F----KFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPV 251 (328)
T ss_dssp ---EEEEE-E----ECCTTCCCEEEEECTTSCEEEEESS---SEEEEET
T ss_pred ---eEEEE-E----ecCCCCCceeEEEecCCCEEEEEcc---EEEEEEC
Confidence 12111 1 00123357788887 889999854 5566764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.023 Score=56.78 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=119.9
Q ss_pred cceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeC
Q 012060 171 ITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDK 249 (472)
Q Consensus 171 v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp 249 (472)
+.++++. ++.++++|+ .+| .+..||..+.+-.. .+......+.+++..+..|++|+.+ ..|-.||.
T Consensus 137 v~~v~~s~~~~~l~~~~--~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d----g~i~i~d~ 203 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGL--GNG-----LVDIYDVESQTKLR--TMAGHQARVGCLSWNRHVLSSGSRS----GAIHHHDV 203 (401)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCCEEE--EECCCSSCEEEEEEETTEEEEEETT----SEEEEEET
T ss_pred EEEEEECCCCCEEEEEC--CCC-----eEEEEECcCCeEEE--EecCCCCceEEEEECCCEEEEEcCC----CCEEEEec
Confidence 3344443 566777777 454 45667766554322 2222233343455544444446544 47889999
Q ss_pred CCcc-cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccc
Q 012060 250 STLQ-ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 250 ~t~~-~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~ 328 (472)
.+.+ ++..+.. +......+.+.+ ++.++++|+.+ +.|..||.++++.+.+.... ...+
T Consensus 204 ~~~~~~~~~~~~------~~~~v~~~~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~--------~~~v 262 (401)
T 4aez_A 204 RIANHQIGTLQG------HSSEVCGLAWRS-DGLQLASGGND------NVVQIWDARSSIPKFTKTNH--------NAAV 262 (401)
T ss_dssp TSSSCEEEEEEC------CSSCEEEEEECT-TSSEEEEEETT------SCEEEEETTCSSEEEEECCC--------SSCC
T ss_pred ccCcceeeEEcC------CCCCeeEEEEcC-CCCEEEEEeCC------CeEEEccCCCCCccEEecCC--------cceE
Confidence 8522 1111111 001112233444 66677777643 46999999999877777655 2334
Q ss_pred cceeeeecCCeEEEEcc--cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECC-EEEEe-c--CCe
Q 012060 329 ADVDVDVDELTLFKICS--KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKN-QVFVG-R--GGS 401 (472)
Q Consensus 329 ~d~~v~~~~~~iy~vGg--~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g-~l~~~-~--g~~ 401 (472)
.+++....+..|++.|+ .++.+..-|+++ ...+.. +.... .-..++. -++ .|+++ + .+.
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-----~~~~~~----~~~~~-----~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-----GARVNT----VDAGS-----QVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTT-----CCEEEE----EECSS-----CEEEEEECSSSSEEEEEECTTTCE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCC-----CCEEEE----EeCCC-----cEEEEEECCCCCeEEEEeecCCCc
Confidence 44445666778898886 666544334332 222222 11111 0112222 134 44443 2 589
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
|.||+-... .... . ..+- ...+.|..+++- |..|+..-.| ..|-||+..
T Consensus 329 i~v~~~~~~----~~~~-~--~~~~-----~h~~~v~~~~~s~dg~~l~s~~~d-g~i~iw~~~ 379 (401)
T 4aez_A 329 LSIWSYSSS----GLTK-Q--VDIP-----AHDTRVLYSALSPDGRILSTAASD-ENLKFWRVY 379 (401)
T ss_dssp EEEEEEETT----EEEE-E--EEEE-----CCSSCCCEEEECTTSSEEEEECTT-SEEEEEECC
T ss_pred EEEEecCCc----ccee-E--EEec-----CCCCCEEEEEECCCCCEEEEEeCC-CcEEEEECC
Confidence 999986421 0000 0 0011 134568777774 6666665544 679999854
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.049 Score=54.85 Aligned_cols=264 Identities=13% Similarity=0.107 Sum_probs=131.1
Q ss_pred eeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccC
Q 012060 136 ASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP 211 (472)
Q Consensus 136 ~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~ 211 (472)
..|. +.+++.++ |.|..||+.. ....+...+-..+.++++. ++.+.+.|+ .+| ++..||..+.+ .+
T Consensus 116 ~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs--~D~-----~i~iwd~~~~~--~~ 185 (410)
T 1vyh_C 116 FHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS--ADM-----TIKLWDFQGFE--CI 185 (410)
T ss_dssp ECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----CCCEEETTSSC--EE
T ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe--CCC-----eEEEEeCCCCc--ee
Confidence 3344 44553443 4588888655 3333333333444445543 567778887 454 34456655433 22
Q ss_pred CCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEe
Q 012060 212 SDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA 289 (472)
Q Consensus 212 a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~ 289 (472)
..+......+.+++... +..++ |+.+ .+|-.||..+.+.+..+... ..|- ..-...-++.++++|+.
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D----~~i~~wd~~~~~~~~~~~~h--~~~v-----~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRD----KTIKMWEVQTGYCVKTFTGH--REWV-----RMVRPNQDGTLIASCSN 254 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETT----SEEEEEETTTCCEEEEEECC--SSCE-----EEEEECTTSSEEEEEET
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEEEEeCC--CccE-----EEEEECCCCCEEEEEcC
Confidence 22322223343455543 34444 6544 47889999985533322110 1111 11112356777888774
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee-------------------ecCCeEEEEcccCCCc
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD-------------------VDELTLFKICSKSGDI 350 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~-------------------~~~~~iy~vGg~~g~~ 350 (472)
+ ++|.+||.++++++=+..... ..+..++.. ...+.+++.|+.++..
T Consensus 255 D------~~v~vwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 255 D------QTVRVWVVATKECKAELREHR--------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp T------SCEEEEETTTCCEEEEECCCS--------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred C------CeEEEEECCCCceeeEecCCC--------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 4 469999999987443333221 000000001 1125677888888765
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFV 426 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~ 426 (472)
..-|+++ ..++.. +.... ..+ .++.. +|+.+++++ +.|-+|+-... +..+. +-
T Consensus 321 ~iwd~~~-----~~~~~~----~~~h~-----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--------~~~~~-~~ 377 (410)
T 1vyh_C 321 KMWDVST-----GMCLMT----LVGHD-----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKT-LN 377 (410)
T ss_dssp EEEETTT-----TEEEEE----EECCS-----SCEEEEEECSSSSCEEEEETTTEEEEECCTTS--------CCCEE-EE
T ss_pred EEEECCC-----CceEEE----EECCC-----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ceEEE-Ec
Confidence 4434432 223222 11111 111 22222 344444433 77999975311 11111 11
Q ss_pred cccccCCCCceEEEeecCce-EEEeeeccceeEEeec
Q 012060 427 DRVEDSGRGAISRIDAGGNR-LFVSREDVEGIEVWES 462 (472)
Q Consensus 427 ~~~~~~~~~~i~~~~~gg~r-~f~~~~~~~~~~vw~~ 462 (472)
+ ..+.|+.+++.-+. ++++=..-..|-||+.
T Consensus 378 ~-----h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 A-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp C-----CSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred C-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 1 34579999997653 5667677788999973
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.013 Score=58.09 Aligned_cols=216 Identities=16% Similarity=0.139 Sum_probs=114.2
Q ss_pred CceEEeeccc-CCCCCcc----ccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccccee
Q 012060 149 GQISVYDWNL-SHSVTVR----THLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVT 222 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R----~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ 222 (472)
|.|..||... ......+ .|-+.+.++++. ++...+.|+ .+| ++..||..+.+- +..+......+.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs--~d~-----~i~iwd~~~~~~--~~~~~~h~~~V~ 173 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS--KDI-----CIKVWDLAQQVV--LSSYRAHAAQVT 173 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTTEE--EEEECCCSSCEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCcE--EEEEcCcCCceE
Confidence 4588877544 3322222 122334455543 567777787 455 456677665542 222222223333
Q ss_pred EEEEe-CC-eEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 223 AIADS-PT-TVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 223 ava~l-~g-~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
+++.. ++ .+++ |+.+ .+|-.||..+.+++.++.... .......+.+.+.++.++|+|+.+ +.|
T Consensus 174 ~~~~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~l~sg~~d------g~v 239 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSED----NRILLWDTRCPKPASQIGCSA----PGYLPTSLAWHPQQSEVFVFGDEN------GTV 239 (344)
T ss_dssp EEEECSSCTTEEEEEETT----SCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETT------SEE
T ss_pred EEEecCCCCCceeeeccc----cccccccccccceeeeeecce----eeccceeeeecCCCCcceEEeccC------CcE
Confidence 35543 23 4777 6554 468899999977666554311 111123344556678888888743 479
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~ 379 (472)
.+||.++++++.++... ...+-.++..-.+..+.+.|+.|+....-|+++ ...+. +..-..
T Consensus 240 ~~wd~~~~~~~~~~~~h--------~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-----~~~~~-----~~~H~~- 300 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAVH--------SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-----SELFR-----SQAHRD- 300 (344)
T ss_dssp EEEESCC--CCEEEECC--------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-----CEEEE-----ECCCSS-
T ss_pred EEEECCCCcEEEEEcCC--------CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-----CcEEE-----EcCCCC-
Confidence 99999999988887755 122222223444557778888887654334332 12222 111111
Q ss_pred CCCcCeEEEEE--CCEEEEec--CCeEEEeeccc
Q 012060 380 NNGENKLIHCY--KNQVFVGR--GGSLEVWSRVR 409 (472)
Q Consensus 380 ~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~ 409 (472)
.=..|+.. +.+|++++ .+.|-+|.-..
T Consensus 301 ---~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 301 ---FVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ---CEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ---CEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 01122222 34677765 48899997653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.028 Score=53.92 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=58.5
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
+.++++|+ .+| .+..||..+.+- +..+......+.+++.. ++.+++ |+.+ ..|-.||..+.+++
T Consensus 85 ~~~l~~~~--~dg-----~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~ 151 (366)
T 3k26_A 85 HPLLAVAG--SRG-----IIRIINPITMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSKD----HALRLWNIQTDTLV 151 (366)
T ss_dssp CEEEEEEE--TTC-----EEEEECTTTCCE--EEEEESCCSCEEEEEECSSCTTEEEEEETT----SCEEEEETTTTEEE
T ss_pred CCEEEEec--CCC-----EEEEEEchhceE--eeeecCCCCcEEEEEECCCCCCEEEEEeCC----CeEEEEEeecCeEE
Confidence 35777777 454 456677665432 22222222333345555 445555 6554 46889999986655
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
..+.... -.......+.+.+ ++..+++|+.+ +.|..||.++++.
T Consensus 152 ~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~ 195 (366)
T 3k26_A 152 AIFGGVE---GHRDEVLSADYDL-LGEKIMSCGMD------HSLKLWRINSKRM 195 (366)
T ss_dssp EEECSTT---SCSSCEEEEEECT-TSSEEEEEETT------SCEEEEESCSHHH
T ss_pred EEecccc---cccCceeEEEECC-CCCEEEEecCC------CCEEEEECCCCcc
Confidence 5542100 1111223344444 45556666643 4699999998863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0093 Score=59.15 Aligned_cols=194 Identities=11% Similarity=0.083 Sum_probs=105.9
Q ss_pred ccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEE-EecCCCCCceeE
Q 012060 170 NITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFS-SLVCPHKENSVL 245 (472)
Q Consensus 170 ~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~~~~~l~sVE 245 (472)
.+.++++. ++..++.|+ .+| ++..||..+.+-.. .+......+.+++... +.+++ ++.+ .+|-
T Consensus 141 ~V~~v~~spdg~~l~sgs--~dg-----~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~d----g~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGG--KDF-----SVKVWDLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGED----GRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEE--TTS-----CEEEEETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETT----SCEE
T ss_pred CEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccC----CceE
Confidence 34445543 567777777 455 35567776654322 2222222333355543 24566 6554 3688
Q ss_pred EEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccc
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFG 325 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~ 325 (472)
.||..+.+++..+... -.......+.+.+-++.++++|+.+ +.|.+||.++++.+-+.... .
T Consensus 208 ~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~--------~ 269 (357)
T 4g56_B 208 LWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVH--------S 269 (357)
T ss_dssp ECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCC--------S
T ss_pred EEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEecc--------c
Confidence 9999986654433221 1111223445556677888887743 46999999999877666544 1
Q ss_pred ccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE--ECCEEEEecC--Ce
Q 012060 326 DSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC--YKNQVFVGRG--GS 401 (472)
Q Consensus 326 ~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~--~~g~l~~~~g--~~ 401 (472)
..+-.++....++.+.+.|+.|+....-|++ + ...+.. +.... .=..|+. .+++++++++ +.
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~---~--~~~~~~----~~H~~-----~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVAVLDAD---F--SEVFRD----LSHRD-----FVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTT---S--CEEEEE----CCCSS-----CEEEEEECSSSTTEEEEEETTSC
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEEEEECC---C--CcEeEE----CCCCC-----CEEEEEEeCCCCCEEEEEcCCCe
Confidence 2222222344556777888888765433333 2 223332 11111 1123343 2677777655 88
Q ss_pred EEEeecc
Q 012060 402 LEVWSRV 408 (472)
Q Consensus 402 ~~v~~~~ 408 (472)
|-+|+-.
T Consensus 336 v~iW~~~ 342 (357)
T 4g56_B 336 VLHHHLP 342 (357)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.025 Score=56.27 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=99.9
Q ss_pred EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCC-ee
Q 012060 231 VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG-EV 309 (472)
Q Consensus 231 IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~-~~ 309 (472)
|+.|+.+ .+|-.||..+.+.+..++..... -+....+.+.+.+.++.++++|+.++ +|..||.+.. ++
T Consensus 173 l~s~s~D----~~i~~wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 173 LITGSGD----QTCVLWDVTTGQRISIFGSEFPS-GHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRA 241 (380)
T ss_dssp EEEECTT----SCEEEECTTTCCEEEEECCCSSS-SCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCC
T ss_pred EEEECCC----CcEEEEEcCCCcEEEEeecccCC-CCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcc
Confidence 5545443 47889999986654444321100 01111223334445778888887544 6999999844 43
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH- 388 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~- 388 (472)
+-+.... ...+-.++... ++..++.|+.|+....-|+++-+ +-..+............ .-..++
T Consensus 242 ~~~~~~h--------~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~----~v~~~~~ 306 (380)
T 3iz6_a 242 VRTYHGH--------EGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELP----IVTSVAF 306 (380)
T ss_dssp CEEECCC--------SSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSC----SCSEEEE
T ss_pred eEEECCc--------CCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccC----ceEEEEE
Confidence 3444332 11122222233 67788899999876544555321 00011100000000000 011222
Q ss_pred EECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeecCCC
Q 012060 389 CYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 389 ~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~~ 465 (472)
.-+|++++++ +|.|.+|+-... +.+ +. ++.......+.|+.+++--| +++++=..-..|-||+.+..
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~-------~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLA-------EMV-LN--LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTC-------CEE-EE--ECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCCEEEEEECCCCEEEEECCCC-------ceE-EE--EecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 2355555555 388999985321 111 11 11111234567888888543 45666666778999986543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.024 Score=56.09 Aligned_cols=271 Identities=13% Similarity=0.045 Sum_probs=119.7
Q ss_pred EEEeeeCceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecc-eeeeecCCCCc--cccCCCCcCc
Q 012060 143 LWIAHGGQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYD-LSSSRHVASAH--WTDPSDPRIY 217 (472)
Q Consensus 143 l~va~GG~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~-sve~ydp~t~~--W~~~a~m~~~ 217 (472)
+|+..+|.-....|.+ +..+ ..+-..+.++++ -||.+.|.|+ .+.....+ ++..|+..+.. ..........
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p--~~H~~~V~~v~fSpDG~~las~s--~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP--ACMEVQIGAVRYRRDGALLLAAS--SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp ------------------------CCCSEEEEEEECSSSCEEEEEE--CSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred eEEecCCCccccccCCCCCCc--ccccCCEEEEEECCCCCEEEEEc--CCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 3433334333333776 3222 222233444444 4677888777 33322212 34455443321 1122222222
Q ss_pred ccceeEEEEeC-CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 218 RATVTAIADSP-TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 218 R~~~~ava~l~-g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
...+.+++... +.+.+++.+ .+|..||..+.+.......... -+.-+-..+.+. -++.++++|+.+
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~d----g~v~lWd~~~~~~~~~~~~~~~--~h~~~V~~v~~s-pdg~~l~sgs~d------ 160 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDS----GAVELWEILEKESLLVNKFAKY--EHDDIVKTLSVF-SDGTQAVSGGKD------ 160 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETT----SCEEEC--------CCCCEEEC--CCSSCEEEEEEC-SSSSEEEEEETT------
T ss_pred CCCEEEEEEcCCCCEEEEECC----CEEEEeeccccceeEEEeeccC--CCCCCEEEEEEC-CCCCEEEEEeCC------
Confidence 33344466554 456665443 3688999988442111100000 000011222233 356666777744
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS 376 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~ 376 (472)
+.|..||.++++++.+..... ..+-.++....+..+++.|+.++....-|+++-+ .+.. +...
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~--------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-----~~~~----~~~~ 223 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHS--------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-----PATR----IDFC 223 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCS--------SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-----CBCB----CCCT
T ss_pred CeEEEEECCCCcEEEEEcCCC--------CCEEEEEEccCCCceeeeeccCCceEEEECCCCc-----eeee----eeec
Confidence 469999999999887776541 1222222344456788899988765443444321 1111 1111
Q ss_pred CCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEe
Q 012060 377 SGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVS 450 (472)
Q Consensus 377 ~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~ 450 (472)
... ..-..++.. ++++++++ .+.|.+|+--.. +. .+.+-+ ..+.|+.++|- |.+++++
T Consensus 224 ~~~--~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------~~-~~~~~~-----~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 224 ASD--TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------DS-AQTSAV-----HSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TCC--SCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------GG-CEEECC-----CSSCEEEEEECSSSSCCEEE
T ss_pred ccc--ccccchhhhhcccceEEEeecccceeEEECCCC--------cE-eEEEec-----cceeEEEEEEcCCCCCEEEE
Confidence 100 011122332 46677764 478999975321 11 111111 34578888884 6678888
Q ss_pred eeccceeEEeecC
Q 012060 451 REDVEGIEVWESS 463 (472)
Q Consensus 451 ~~~~~~~~vw~~~ 463 (472)
=.+-..|-||+..
T Consensus 288 gs~D~~i~iwd~~ 300 (357)
T 4g56_B 288 ISEDCTVAVLDAD 300 (357)
T ss_dssp EETTSCEEEECTT
T ss_pred EeCCCEEEEEECC
Confidence 7777889999854
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.027 Score=55.65 Aligned_cols=210 Identities=13% Similarity=0.130 Sum_probs=112.2
Q ss_pred CcEEEeee-CceEEee-------ccc-CCCCCc--cccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC--Cc
Q 012060 141 GSLWIAHG-GQISVYD-------WNL-SHSVTV--RTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AH 207 (472)
Q Consensus 141 g~l~va~G-G~Ve~YD-------W~~-~~m~~~--R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~ 207 (472)
+.+|+... |.+..|| |.. ...+.. +... ..+..++.+|+ |. .+| .+-.+|+.+ ..
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~~~~~~~v~~-g~--~~g-----~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----APTTAFGAAVV-GG--DNG-----RVSAVLMEQGQMI 211 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----CCEEETTEEEE-CC--TTT-----EEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----CcEEECCEEEE-Ec--CCC-----EEEEEECCCCcEE
Confidence 55663322 4588888 876 322221 1111 23345777666 43 233 355666653 34
Q ss_pred cccCCCCcCcc--------cceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec
Q 012060 208 WTDPSDPRIYR--------ATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA 279 (472)
Q Consensus 208 W~~~a~m~~~R--------~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~ 279 (472)
|.......... ... ..+..++.||++..+ ..+-+||+.+ |+ -.|+.-.+....-...
T Consensus 212 w~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~v~~~~~~----g~l~~~d~~t-------G~---~~w~~~~~~~~~~~~~ 276 (376)
T 3q7m_A 212 WQQRISQATGSTEIDRLSDVDT-TPVVVNGVVFALAYN----GNLTALDLRS-------GQ---IMWKRELGSVNDFIVD 276 (376)
T ss_dssp EEEECCC-----------CCCC-CCEEETTEEEEECTT----SCEEEEETTT-------CC---EEEEECCCCEEEEEEE
T ss_pred EEEecccCCCCcccccccccCC-CcEEECCEEEEEecC----cEEEEEECCC-------Cc---EEeeccCCCCCCceEE
Confidence 66532211000 111 134568899996433 3578999998 44 3376543322223346
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.||++.. .+.+.+||+++++++|+..... . +.... .++.++.||+ +..+|.+...|.++ +
T Consensus 277 ~~~l~~~~~-------~g~l~~~d~~tG~~~w~~~~~~---~-~~~~~-----~~~~~~~l~v-~~~~g~l~~~d~~t-G 338 (376)
T 3q7m_A 277 GNRIYLVDQ-------NDRVMALTIDGGVTLWTQSDLL---H-RLLTS-----PVLYNGNLVV-GDSEGYLHWINVED-G 338 (376)
T ss_dssp TTEEEEEET-------TCCEEEEETTTCCEEEEECTTT---T-SCCCC-----CEEETTEEEE-ECTTSEEEEEETTT-C
T ss_pred CCEEEEEcC-------CCeEEEEECCCCcEEEeecccC---C-CcccC-----CEEECCEEEE-EeCCCeEEEEECCC-C
Confidence 889998642 3469999999999999987431 1 11122 2455889885 44455444433332 1
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEee
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWS 406 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~ 406 (472)
+-.|..-.+ ... .....+..+|.||+... |.|..|+
T Consensus 339 ~~~~~~~~~------~~~-----~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 339 RFVAQQKVD------SSG-----FQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CEEEEEECC------TTC-----BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred cEEEEEecC------CCc-----ceeCCEEECCEEEEEeCCCEEEEEe
Confidence 222543221 111 23344567999999854 6787775
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.19 Score=49.51 Aligned_cols=237 Identities=14% Similarity=0.067 Sum_probs=122.8
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
-++.++++|+ .+| .+..||..+.+-... +......+.+++.. ++.+.+ |+.+ .+|-.||..+.+.
T Consensus 107 ~~~~~l~~~~--~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d----~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 107 LQMRRFILGT--TEG-----DIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQD----MQLKIWSVKDGSN 173 (420)
T ss_dssp SSSCEEEEEE--TTS-----CEEEECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCCC
T ss_pred cCCCEEEEEE--CCC-----CEEEEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCC----CeEEEEeCCCCcC
Confidence 4677888887 454 455666665443222 11222333345555 344444 6544 4789999998554
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcc----------
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARF---------- 324 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~---------- 324 (472)
+..+.. +..+...+.+.+ ++.++++|+.+ ++|.+||.++++.+.+...+......-.
T Consensus 174 ~~~~~~------h~~~v~~~~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 174 PRTLIG------HRATVTDIAIID-RGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240 (420)
T ss_dssp CEEEEC------CSSCEEEEEEET-TTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred ceEEcC------CCCcEEEEEEcC-CCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence 333321 011113344554 45555666643 4699999999998888775310000000
Q ss_pred ------cccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCE-EEE
Q 012060 325 ------GDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQ-VFV 396 (472)
Q Consensus 325 ------~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~-l~~ 396 (472)
...+..++... ++.+.++|+.++....-|+++-+ .+.. ....-.+ .-..++.. +++ +++
T Consensus 241 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~----~~~~~~~---~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKE-----QTIQ----LPSKFTC---SCNSLTVDGNNANYIY 307 (420)
T ss_dssp SCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCC-----EEEE----ECCTTSS---CEEEEEECSSCTTEEE
T ss_pred eeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCc-----eeEE----cccccCC---CceeEEEeCCCCCEEE
Confidence 00011111122 66777888888775544544322 1111 1111100 11222322 233 444
Q ss_pred ecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 397 GRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 397 ~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
+++ |.|.+|+--.. ...-..++. ..+..|+.+.+--++++++=.+...|-||+...
T Consensus 308 ~g~~dg~i~vwd~~~~----~~~~~~~~~--------~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSP----ECPVGEFLI--------NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEETTSEEEEEETTCT----TSCSEEEEE--------STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred EEeCCCeEEEEEcCCC----cCchhhhhc--------cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 433 89999976421 000111111 245678888887778888888888999999655
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.012 Score=56.57 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=116.5
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+-++.||...| ..|. +++..+|+.+.+-..--++...-.+. +++..++.||+.-+ ..+.+-+||+.|.
T Consensus 25 GL~~~~~~LyestG--~~g~---S~v~~vD~~tgkv~~~~~l~~~~fge-Gi~~~~~~ly~ltw---~~~~v~v~D~~tl 95 (243)
T 3mbr_X 25 GLFYLRGHLYESTG--ETGR---SSVRKVDLETGRILQRAEVPPPYFGA-GIVAWRDRLIQLTW---RNHEGFVYDLATL 95 (243)
T ss_dssp EEEEETTEEEEEEC--CTTS---CEEEEEETTTCCEEEEEECCTTCCEE-EEEEETTEEEEEES---SSSEEEEEETTTT
T ss_pred cEEEECCEEEEECC--CCCC---ceEEEEECCCCCEEEEEeCCCCccee-EEEEeCCEEEEEEe---eCCEEEEEECCcC
Confidence 45567899999988 4443 46778899988765544444333344 38889999999422 3578999999998
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC-cccccccce
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA-RFGDSFADV 331 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~-R~~~~~~d~ 331 (472)
+++.+|.-. +..|... .-++.||++ +| .+.|..+||.|.+++=+ ++......+ +.---+
T Consensus 96 ~~~~ti~~~-~~Gwglt--------~dg~~L~vS---dg----s~~l~~iDp~t~~~~~~-I~V~~~g~~~~~lNeL--- 155 (243)
T 3mbr_X 96 TPRARFRYP-GEGWALT--------SDDSHLYMS---DG----TAVIRKLDPDTLQQVGS-IKVTAGGRPLDNLNEL--- 155 (243)
T ss_dssp EEEEEEECS-SCCCEEE--------ECSSCEEEE---CS----SSEEEEECTTTCCEEEE-EECEETTEECCCEEEE---
T ss_pred cEEEEEeCC-CCceEEe--------eCCCEEEEE---CC----CCeEEEEeCCCCeEEEE-EEEccCCcccccceee---
Confidence 877666542 2344332 236788887 33 35799999999984422 222100001 111111
Q ss_pred eeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC-CCCCCCcCeEEEEE--CCEEEEecC
Q 012060 332 DVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS-SGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 332 ~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~-~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
...+++||+-.-.++.....|.++-+--.|..++.+.+..... .. ....--|||.. .++||+++.
T Consensus 156 --e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~-~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 --EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDS-TNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp --EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCT-TSSCEEEEEEETTTTEEEEEET
T ss_pred --EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCC-cCCceEEEEEcCCCCEEEEECC
Confidence 2338999976655666555566655522266666533321110 00 11134678876 579999987
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.16 Score=49.91 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=122.8
Q ss_pred cceeee-eCCeEEEEcCcCCCCceecceeeeecCCCC--ccccCCCCcCcccceeEEEEeC--CeEEE-EecCCCCCcee
Q 012060 171 ITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASA--HWTDPSDPRIYRATVTAIADSP--TTVFS-SLVCPHKENSV 244 (472)
Q Consensus 171 v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~--~W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~~~~~l~sV 244 (472)
+.++++ -++.+++.|+ .+| .+..||..+. ....+..+......+.+++... +.+++ |+.+ ..|
T Consensus 70 v~~~~~s~~~~~l~~~~--~dg-----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v 138 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGAL--DNG-----SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN----GEI 138 (416)
T ss_dssp EEEEEECSSSSCEEEEE--SSS-----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS----SCE
T ss_pred eEEEEECCCCCeEEEEc--cCC-----eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC----CeE
Confidence 334444 2566677776 444 3455665541 1111222222222333455552 44444 6544 468
Q ss_pred EEEeCCCcc------cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 245 LLIDKSTLQ------ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 245 E~YDp~t~~------~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
-.||..+.+ ....+.... -+......+.+.+-++.++++|+.+ +.|..||.++++.+.+...+.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~- 208 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSM---SSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKAKKEVIHLSYTS- 208 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSC---CSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTTTEEEEEECCCC-
T ss_pred EEEECCCCcccccccccccccccc---CCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCCCCcceEEeccc-
Confidence 889998844 111111100 0111123344544446777776643 469999999999777766541
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCC---CcccccccccCCCCcEEeecCCCCcc-cCCCCCCCcCeEEEEE--CC
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSG---DIAMADLRNLGEDPWVYMEDKNPSMI-SSSGNNNGENKLIHCY--KN 392 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g---~~~~~dl~s~e~d~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~--~g 392 (472)
........+.+++....+..++++|+.++ .+..-|+++-. ..+.. +. .... .-..++.. ++
T Consensus 209 -~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~~~~----~~~~~~~----~v~~~~~s~~~~ 275 (416)
T 2pm9_A 209 -PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TPLQT----LNQGHQK----GILSLDWCHQDE 275 (416)
T ss_dssp -CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SCSBC----CCSCCSS----CEEEEEECSSCS
T ss_pred -cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CCcEE----eecCccC----ceeEEEeCCCCC
Confidence 10000122223334444557888998876 54433443311 01111 11 1110 11223332 56
Q ss_pred EEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEEeecCCC
Q 012060 393 QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 393 ~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~~~ 465 (472)
+++++++ +.|.+|+-... +. .+.+-+ ..+.|..+++--| +++++=.+...|-||+-...
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~--------~~-~~~~~~-----~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESA--------EQ-LSQFPA-----RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCEEEEESSSEEEEECSSSC--------CE-EEEEEC-----SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CeEEEEeCCCCEEEeeCCCC--------cc-ceeecC-----CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 6666654 88999985311 11 111111 2456877777643 57888777888999986544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.013 Score=58.07 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=106.1
Q ss_pred eeEEEEeCCe-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 221 VTAIADSPTT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 221 ~~ava~l~g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
+.+++...+. |.+|..+ .+|..||..+.+.+..+.... .-+.-+-..+.+. -++.++++|+.+ ++|
T Consensus 85 v~~~~~s~d~~l~~~s~d----g~v~lWd~~~~~~~~~~~~~~--~~H~~~V~~v~~s-pdg~~l~sgs~d------~~i 151 (344)
T 4gqb_B 85 VADLTWVGERGILVASDS----GAVELWELDENETLIVSKFCK--YEHDDIVSTVSVL-SSGTQAVSGSKD------ICI 151 (344)
T ss_dssp EEEEEEETTTEEEEEETT----SEEEEEEECTTSSCEEEEEEE--ECCSSCEEEEEEC-TTSSEEEEEETT------SCE
T ss_pred EEEEEEeCCCeEEEEECC----CEEEEEeccCCCceeEeeccc--cCCCCCEEEEEEC-CCCCEEEEEeCC------CeE
Confidence 3346665544 4446544 479999999854222111000 0000001122222 366677777744 469
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~ 379 (472)
.+||.++++++-++... ...+..++....+..+++.|+.|+....=|+++-+ +-..+. ....+
T Consensus 152 ~iwd~~~~~~~~~~~~h--------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~-------~~~~~ 214 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYRAH--------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIG-------CSAPG 214 (344)
T ss_dssp EEEETTTTEEEEEECCC--------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC-----------C
T ss_pred EEEECCCCcEEEEEcCc--------CCceEEEEecCCCCCceeeeccccccccccccccc--eeeeee-------cceee
Confidence 99999999977776654 12222233345566789999998875543444322 011111 11110
Q ss_pred CCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeec
Q 012060 380 NNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSRED 453 (472)
Q Consensus 380 ~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~ 453 (472)
. .-..++.. ++++++++ ++.|.+|+--.. +..+ .+-+ ..+.|+.++|- |.+++++=.+
T Consensus 215 ~--~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------~~~~-~~~~-----h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 215 Y--LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------SCVL-SSAV-----HSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp C--CEEEEEECSSCTTEEEEEETTSEEEEEESCC----------CCE-EEEC-----CSSCEEEEEECSSSSCCEEEEET
T ss_pred c--cceeeeecCCCCcceEEeccCCcEEEEECCCC--------cEEE-EEcC-----CCCCEEEEEEccCCCeEEEEEeC
Confidence 0 11122322 56777765 478999975311 1111 1222 24579999985 6688888888
Q ss_pred cceeEEeecCC
Q 012060 454 VEGIEVWESSN 464 (472)
Q Consensus 454 ~~~~~vw~~~~ 464 (472)
-..|-||+...
T Consensus 279 D~~i~vwd~~~ 289 (344)
T 4gqb_B 279 DCSLAVLDSSL 289 (344)
T ss_dssp TSCEEEECTTC
T ss_pred CCeEEEEECCC
Confidence 88899998653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.036 Score=54.60 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=87.8
Q ss_pred cccceeeeeC--CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCc----ccceeEEEEeCC--eEEE-EecCCC
Q 012060 169 DNITSIRHVW--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIY----RATVTAIADSPT--TVFS-SLVCPH 239 (472)
Q Consensus 169 ~~v~~v~~l~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~----R~~~~ava~l~g--~IYA-Gg~~~~ 239 (472)
..+.++++.. +.+++.|+ .+| .+..||..+.+-...-..... ...+.+++...+ .+++ ++.++
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~--~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~- 237 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAG--SSN-----FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD- 237 (416)
T ss_dssp CCCCEEEECSSCTTEEEEES--SSS-----CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS-
T ss_pred CCeeEEEeCCCCCcEEEEEc--CCC-----CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC-
Confidence 3344555443 46788887 454 355667665543222111110 222333555543 4666 65443
Q ss_pred CCceeEEEeCCCc-ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 240 KENSVLLIDKSTL-QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 240 ~l~sVE~YDp~t~-~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
....|..||..+. +++..+.. -+......+.+.+.++.++++|+.+ +.|.+||.++++.+-+....
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~-- 304 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQ-----GHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPAR-- 304 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCS-----CCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEECS--
T ss_pred CCceEEEEeCCCCCCCcEEeec-----CccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecCC--
Confidence 1237889999984 33333320 0111123344545467777777643 47999999999977776654
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
...+.+++....+..+++.|+.++....-|++.
T Consensus 305 ------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 305 ------GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ------SSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred ------CCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 122333444554447889999887655445543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.026 Score=56.26 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=114.5
Q ss_pred eeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccc--ccccc
Q 012060 197 LSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKN--MAVGK 273 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~--v~~m~ 273 (472)
.+..+|+.+.++..+........-.+ ++.. ++.+|+++.. -.+|..||+.+.+.+..+... .+.. .....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~---~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~v~~ 174 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKS-VRFIDNTRLAIPLLE---DEGMDVLDINSGQTVRLSPPE---KYKKKLGFVET 174 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCC-CEESSSSEEEEEBTT---SSSEEEEETTTCCEEEECCCH---HHHTTCCEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceE-EEEeCCCeEEEEeCC---CCeEEEEECCCCeEeeecCcc---cccccCCceeE
Confidence 44566775554444333222221221 3433 6778884322 246899999985533211110 0000 00011
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
..+ .-++.+|++++. .+.|.+||+++++++++.... +..+..++....+..||+.+..++.+..-
T Consensus 175 ~~~-~~~~~~~~s~~~------d~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 175 ISI-PEHNELWVSQMQ------ANAVHVFDLKTLAYKATVDLT--------GKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp EEE-GGGTEEEEEEGG------GTEEEEEETTTCCEEEEEECS--------SSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEE-cCCCEEEEEECC------CCEEEEEECCCceEEEEEcCC--------CCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 122 357888887763 357999999999988887644 12222334466677888888777765443
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec---------CCeEEEeeccccccccccCCccee
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR---------GGSLEVWSRVREGRNRSCSEGLFR 422 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~---------g~~~~v~~~~~~~~~~~~~~~~~r 422 (472)
|+++ . ..+.. +.... .-..++.. +..||+.. ++.|.+|+.... ++.+
T Consensus 240 d~~~---~--~~~~~----~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--------~~~~ 297 (433)
T 3bws_A 240 DRKT---K--LEIRK----TDKIG-----LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--------KLID 297 (433)
T ss_dssp ETTT---T--EEEEE----CCCCS-----EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--------EEEE
T ss_pred ECCC---C--cEEEE----ecCCC-----CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--------cEEe
Confidence 4432 2 22222 11111 11223322 33666665 468889986311 1111
Q ss_pred eccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 423 RNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 423 ~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
. .+. .+.+..+++. |++||++-.....|-||+..
T Consensus 298 ~--~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 298 T--IGP-----PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp E--EEE-----EECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred e--ccC-----CCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 1 111 1245666665 66899998888899999865
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.11 Score=49.66 Aligned_cols=288 Identities=15% Similarity=0.158 Sum_probs=134.5
Q ss_pred cceeeccCCcEEEeee------CceEEeeccc-CCCCCccccc-cccceeeeeC----CeEEEEcCcCCCCceecceeee
Q 012060 133 TFTASSDDGSLWIAHG------GQISVYDWNL-SHSVTVRTHL-DNITSIRHVW----SDVAAVGSDYSSGIHFYDLSSS 200 (472)
Q Consensus 133 a~r~~~~~g~l~va~G------G~Ve~YDW~~-~~m~~~R~~~-~~v~~v~~l~----~~lYavGG~~~~g~~~l~sve~ 200 (472)
++...|....++ +.| |.|..||... .........+ ..+.++++.. +.+++.|+ .+| .+..
T Consensus 23 ~~~~~p~~~~l~-~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg-----~i~i 94 (357)
T 3i2n_A 23 DCKWVPCSAKFV-TMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD--FGG-----NLHI 94 (357)
T ss_dssp EEEECTTSSEEE-EEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE--TTS-----CEEE
T ss_pred EEEEcCCCceEE-EecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec--CCC-----eEEE
Confidence 344445422344 555 3477777443 2111111112 2333444443 36677777 454 3555
Q ss_pred ecCCCCccccCCCCcCcccceeEEEEe-------CCeEEE-EecCCCCCceeEEEeCCCcc-cccccccccCCCcccccc
Q 012060 201 RHVASAHWTDPSDPRIYRATVTAIADS-------PTTVFS-SLVCPHKENSVLLIDKSTLQ-ISSEIGRQSGASSKNMAV 271 (472)
Q Consensus 201 ydp~t~~W~~~a~m~~~R~~~~ava~l-------~g~IYA-Gg~~~~~l~sVE~YDp~t~~-~~~~~~~~~~~~W~~v~~ 271 (472)
||..+.+ ..+..+......+.++... ++.+.+ |+.+ ..|-.||..+.+ ++..+....+..-..+
T Consensus 95 wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v-- 167 (357)
T 3i2n_A 95 WNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD----GTVKVWDPRQKDDPVANMEPVQGENKRDC-- 167 (357)
T ss_dssp ECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT----SCEEEECTTSCSSCSEEECCCTTSCCCCE--
T ss_pred EeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCC----CeEEEEeCCCCCCcceeccccCCCCCCce--
Confidence 6655443 1111122222222223222 344444 6544 368899998854 3333322111000011
Q ss_pred cceeE---EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec--CCeEEEEccc
Q 012060 272 GKLTW---IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD--ELTLFKICSK 346 (472)
Q Consensus 272 m~~~~---~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~--~~~iy~vGg~ 346 (472)
....+ ..-++.++++|+. .+.|..||.++++..+....+. .-.+ ++.... ++..+++|+.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~------~v~~---~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD------NGDIKLFDLRNMALRWETNIKN------GVCS---LEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET------TSEEEEEETTTTEEEEEEECSS------CEEE---EEESCSSSSCCEEEEEES
T ss_pred EEEEEEeccCCCCCEEEEEcc------CCeEEEEECccCceeeecCCCC------ceEE---EEcCCCCCCCCEEEEECC
Confidence 11111 1135666676663 3579999999999766544331 1112 111221 5677778888
Q ss_pred CCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCE-EEEecC--CeEEEeecccccccc-----c-
Q 012060 347 SGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQ-VFVGRG--GSLEVWSRVREGRNR-----S- 415 (472)
Q Consensus 347 ~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~-l~~~~g--~~~~v~~~~~~~~~~-----~- 415 (472)
++....-|+++-+ ........ +..... .-..++.. +++ ++++++ +.|.+|+-....... +
T Consensus 233 dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~ 303 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGFASVS-----EKAHKS----TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303 (357)
T ss_dssp TTEEEEEEEEEEETTTEEEEEE-----EECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred CCeEEEEeCcCCCcccceeeec-----cCCCcC----CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence 8766544555433 21111111 001111 11223333 344 566544 889999864320000 0
Q ss_pred ---cCC--cceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCC
Q 012060 416 ---CSE--GLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 416 ---~~~--~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~ 465 (472)
... .. -..+- ...+.|+.+++- |..|+++=.+...|.||+...+
T Consensus 304 ~~~~~~~~~~-~~~~~-----~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 304 EMGVAGSVSL-LQNVT-----LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCCEEEE-EEEEE-----CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccccce-eeccc-----cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 000 01 11111 134579988886 5567767888889999997654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.09 E-value=0.075 Score=50.54 Aligned_cols=149 Identities=12% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
.+.++++|+.+ +.|..||.++++++-+.... ...+..++... ++.+++.|+.++....-|+++
T Consensus 184 ~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h--------~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~-- 246 (340)
T 4aow_A 184 SNPIIVSCGWD------KLVKVWNLANCKLKTNHIGH--------TGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-- 246 (340)
T ss_dssp SSCEEEEEETT------SCEEEEETTTTEEEEEECCC--------SSCEEEEEECT-TSSEEEEEETTCEEEEEETTT--
T ss_pred CCcEEEEEcCC------CEEEEEECCCCceeeEecCC--------CCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc--
Confidence 45566676633 46999999999966666544 11221222233 677888999887654334432
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEE-EecCCeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVF-VGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~-~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+..+.. +.... .-..++.. +++++ ++.++.|.+|+-........+ +............+.|
T Consensus 247 ---~~~~~~----~~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v 309 (340)
T 4aow_A 247 ---GKHLYT----LDGGD-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL-----KQEVISTSSKAEPPQC 309 (340)
T ss_dssp ---TEEEEE----EECSS-----CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE-----CCC-------CCCCCE
T ss_pred ---Cceeee----ecCCc-----eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEec-----cccceeeeccCCCCCE
Confidence 333332 11111 01112222 23333 335688999975321000001 1111111111245679
Q ss_pred EEEeec--CceEEEeeeccceeEEeecC
Q 012060 438 SRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 438 ~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
+.+++- |..|+..=. -..|-||+..
T Consensus 310 ~~l~~s~dg~~l~sgs~-Dg~v~iW~~~ 336 (340)
T 4aow_A 310 TSLAWSADGQTLFAGYT-DNLVRVWQVT 336 (340)
T ss_dssp EEEEECTTSSEEEEEET-TSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeC-CCEEEEEeCC
Confidence 988875 555555444 4679999854
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.21 Score=47.33 Aligned_cols=273 Identities=12% Similarity=0.122 Sum_probs=129.3
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +..+++.+ |.|..||... ........+-..+.++++. ++.+.+.|+ .+| .+..||..+.+-
T Consensus 28 ~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~-----~i~vwd~~~~~~ 99 (312)
T 4ery_A 28 SVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS--DDK-----TLKIWDVSSGKC 99 (312)
T ss_dssp EEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTCCE
T ss_pred EEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC--CCC-----EEEEEECCCCcE
Confidence 3444444 44443433 4577777322 1111111122223344433 566777777 444 456677665432
Q ss_pred ccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
. ..+......+.+++.. ++.+++ |+.+ ..|-.||..+.+++..+.... .+...+.+. -++.++++
T Consensus 100 ~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~-~~~~~l~~ 166 (312)
T 4ery_A 100 L--KTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVKTGKCLKTLPAHS------DPVSAVHFN-RDGSLIVS 166 (312)
T ss_dssp E--EEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEETTTCCEEEEECCCS------SCEEEEEEC-TTSSEEEE
T ss_pred E--EEEcCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCEEEEEecCCC------CcEEEEEEc-CCCCEEEE
Confidence 1 1122222223224433 334444 6554 368899999865443332210 011122232 35666777
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEe
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYM 366 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~ 366 (472)
|+.+ +.|..||.++++.+-+..... . ..+..++.. -++..+++|+.++....-|+++ ...+
T Consensus 167 ~~~d------~~i~~wd~~~~~~~~~~~~~~--~-----~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~-----~~~~ 227 (312)
T 4ery_A 167 SSYD------GLCRIWDTASGQCLKTLIDDD--N-----PPVSFVKFS-PNGKYILAATLDNTLKLWDYSK-----GKCL 227 (312)
T ss_dssp EETT------SCEEEEETTTCCEEEEECCSS--C-----CCEEEEEEC-TTSSEEEEEETTTEEEEEETTT-----TEEE
T ss_pred EeCC------CcEEEEECCCCceeeEEeccC--C-----CceEEEEEC-CCCCEEEEEcCCCeEEEEECCC-----CcEE
Confidence 7643 469999999998665554331 1 111111122 3566777888887654334432 1222
Q ss_pred ecCCCCcccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--
Q 012060 367 EDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA-- 442 (472)
Q Consensus 367 ~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~-- 442 (472)
.. +................-+++++++++ +.|.+|+-.. ..+.+. +-++ .+.|..+++
T Consensus 228 ~~----~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------~~~~~~-~~~h-----~~~v~~~~~~p 289 (312)
T 4ery_A 228 KT----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--------KEIVQK-LQGH-----TDVVISTACHP 289 (312)
T ss_dssp EE----ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--------CCEEEE-ECCC-----SSCEEEEEECS
T ss_pred EE----EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--------chhhhh-hhcc-----CCcEEEEeecC
Confidence 21 111110000011112223566666655 7899998531 112121 2222 346877777
Q ss_pred cCceEEEee-eccceeEEeecC
Q 012060 443 GGNRLFVSR-EDVEGIEVWESS 463 (472)
Q Consensus 443 gg~r~f~~~-~~~~~~~vw~~~ 463 (472)
-|..|+.+= ++-..|-||++.
T Consensus 290 ~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 290 TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSEEEEEECTTTCCEEEEECC
T ss_pred cCCceEEEEccCCccEEEecCC
Confidence 455555443 355679999863
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.032 Score=55.69 Aligned_cols=225 Identities=14% Similarity=0.162 Sum_probs=112.0
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCc
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIY 217 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~ 217 (472)
+.++++++ |.|..||... ........+-+.+.+++. ++.+++.|+ .+| .+..||..... ..+..+...
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~--~dg-----~i~i~d~~~~~-~~~~~~~~~ 216 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGS--RSG-----AIHHHDVRIAN-HQIGTLQGH 216 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEE--TTS-----EEEEEETTSSS-CEEEEEECC
T ss_pred CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEc--CCC-----CEEEEecccCc-ceeeEEcCC
Confidence 44443333 4588887332 222222222233334444 777788887 454 45566655322 111112222
Q ss_pred ccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccc
Q 012060 218 RATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGY 295 (472)
Q Consensus 218 R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~ 295 (472)
...+.+++.. ++.+++ |+.+ ..|-.||..+.+++..+.. ...+...+.+.+.+..++++|+ |. .
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ll~~~~--gs--~ 282 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGND----NVVQIWDARSSIPKFTKTN------HNAAVKAVAWCPWQSNLLATGG--GT--M 282 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETT----SCEEEEETTCSSEEEEECC------CSSCCCEEEECTTSTTEEEEEC--CT--T
T ss_pred CCCeeEEEEcCCCCEEEEEeCC----CeEEEccCCCCCccEEecC------CcceEEEEEECCCCCCEEEEec--CC--C
Confidence 2233334444 445555 6554 4788999998654443322 1112244556666667777664 22 2
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccCCCCcEEeecCCCCcc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLGEDPWVYMEDKNPSMI 374 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e~d~W~~~~~~~~~m~ 374 (472)
.+.|..||.++++++.+.... ..+..++....+..|++.+| .++....-|++ +.+...... +.
T Consensus 283 d~~i~i~d~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~---~~~~~~~~~----~~ 346 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVDAG---------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS---SSGLTKQVD----IP 346 (401)
T ss_dssp TCEEEEEETTTCCEEEEEECS---------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEE---TTEEEEEEE----EE
T ss_pred CCEEEEEECCCCCEEEEEeCC---------CcEEEEEECCCCCeEEEEeecCCCcEEEEecC---CccceeEEE----ec
Confidence 468999999999977776533 12223334554555555544 66654432333 333444332 11
Q ss_pred cCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecc
Q 012060 375 SSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 375 ~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~ 408 (472)
.... .-..++.. +++.++++ +|.|.+|+-.
T Consensus 347 ~h~~----~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 347 AHDT----RVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CCSS----CCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 1111 11222322 45544444 3889999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.079 Score=50.69 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=94.0
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +.++++.+ |.|..||... ........+-+.+.++++. ++..++.|+ .+| .+..||..+.+-
T Consensus 37 ~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg-----~i~iwd~~~~~~ 108 (369)
T 3zwl_B 37 QVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS--ADY-----SIKLWDVSNGQC 108 (369)
T ss_dssp EEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTT-----EEEEEETTTCCE
T ss_pred EEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCcE
Confidence 3444444 44443333 4588887433 2222222222334444443 466677777 454 455666655543
Q ss_pred ccCCCCcCcccceeEEEEeC-Ce-EEEEecCC-CCCceeEEEeCCCcccccccccccCCCcccc-------cccceeEEe
Q 012060 209 TDPSDPRIYRATVTAIADSP-TT-VFSSLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNM-------AVGKLTWIP 278 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-------~~m~~~~~~ 278 (472)
...-... ..+.+++... +. |+++..+. .....+..||..+.+...++.......-..+ ......+.+
T Consensus 109 ~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 109 VATWKSP---VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp EEEEECS---SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred EEEeecC---CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 3222211 1122244443 33 44454431 2346889999888543322222110000000 111222333
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++.++++|+. .+.|..||.++ .+.+...... ...+..++... ++.++++|+.++....-|+++
T Consensus 186 -~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 186 -KGKYIIAGHK------DGKISKYDVSNNYEYVDSIDLH--------EKSISDMQFSP-DLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp -GGCEEEEEET------TSEEEEEETTTTTEEEEEEECC--------SSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred -CCCEEEEEcC------CCEEEEEECCCCcEeEEEEecC--------CCceeEEEECC-CCCEEEEecCCceEEEEECCC
Confidence 4445555553 35799999999 6766666544 11222222233 667777888887655445443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.99 E-value=0.13 Score=50.35 Aligned_cols=156 Identities=10% Similarity=0.096 Sum_probs=80.2
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC---CCccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS---GDIAMADLR 356 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~---g~~~~~dl~ 356 (472)
++ ++++|+. .+.|..||.++++++.+....- ........+..++... ++.++++|+.+ +.+..-|++
T Consensus 197 ~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFN------NGTVQISELSTLRPLYNFESQH--SMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECT------TSEEEEEETTTTEEEEEEECCC-----CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETT
T ss_pred Cc-eEEEEeC------CCcEEEEECCCCceeEEEeccc--cccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 45 6666652 4579999999999888877510 0000001111122233 56777888877 554433443
Q ss_pred ccCCCCcEEeecCCCC-------ccc--CCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeec
Q 012060 357 NLGEDPWVYMEDKNPS-------MIS--SSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRN 424 (472)
Q Consensus 357 s~e~d~W~~~~~~~~~-------m~~--~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~ 424 (472)
+- ..+.....+ +.. ... .-..++.. ++++++++ ++.|.+|+-... .. .+.
T Consensus 267 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~-~~~ 328 (397)
T 1sq9_A 267 FG-----ERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--------ER-ITT 328 (397)
T ss_dssp TC-----CEEEEECBC--------CCBSBSS----CEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EE-EEE
T ss_pred CC-----cccceeccCcccccccccccccCC----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--------ce-eEE
Confidence 32 222220000 000 111 11223322 35555554 478999986422 01 111
Q ss_pred cc------cccc----------cCCCCceEEEeecCc-----------eEEEeeeccceeEEeecC
Q 012060 425 FV------DRVE----------DSGRGAISRIDAGGN-----------RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 425 ~~------~~~~----------~~~~~~i~~~~~gg~-----------r~f~~~~~~~~~~vw~~~ 463 (472)
+- ++.+ +...+.|..+++--| +++++=.+...|-||+..
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 11 1111 112567999999877 688888888899999853
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.13 Score=49.95 Aligned_cols=186 Identities=15% Similarity=0.225 Sum_probs=98.9
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.. ++...| |+.+ ..|..||..+.++...+... -..+ ..+.+. -++.++++|+.+ +.|..
T Consensus 128 ~~~spdg~~l~~g~~d----g~v~i~~~~~~~~~~~~~~~----~~~v--~~~~~s-pdg~~lasg~~d------g~i~i 190 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHV----GKVNIFGVESGKKEYSLDTR----GKFI--LSIAYS-PDGKYLASGAID------GIINI 190 (321)
T ss_dssp EEECTTSSEEEEECTT----SEEEEEETTTCSEEEEEECS----SSCE--EEEEEC-TTSSEEEEEETT------SCEEE
T ss_pred EEECCCCCEEEEEcCC----CcEEEEEcCCCceeEEecCC----CceE--EEEEEC-CCCCEEEEEcCC------CeEEE
Confidence 4433 344455 6443 47889999885432222110 0001 122233 366677777744 46999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNN 381 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~ 381 (472)
||.++++++-+.... ...+.+++... ++.+++.|+.++....-|++.- ..+.. +....
T Consensus 191 wd~~~~~~~~~~~~h--------~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-----~~~~~----~~~h~---- 248 (321)
T 3ow8_A 191 FDIATGKLLHTLEGH--------AMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-----NLAGT----LSGHA---- 248 (321)
T ss_dssp EETTTTEEEEEECCC--------SSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-----CEEEE----ECCCS----
T ss_pred EECCCCcEEEEEccc--------CCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-----ceeEE----EcCCC----
Confidence 999999977666544 11222222333 6777888998876544344321 12221 11111
Q ss_pred CcCe-EEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccce
Q 012060 382 GENK-LIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEG 456 (472)
Q Consensus 382 ~~~~-~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~ 456 (472)
..+ .++.. +++.+++++ +.|.+|+-... +. .+.+.++ .+.|..+++-.| +++++=.+...
T Consensus 249 -~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--------~~-~~~~~~h-----~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 249 -SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--------TC-VHTFFDH-----QDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EE-EEEECCC-----SSCEEEEEECTTSSEEEEEETTCC
T ss_pred -CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------EE-EEEEcCC-----CCcEEEEEECCCCCEEEEEeCCCe
Confidence 111 22222 455555543 78999975311 11 2223332 457988888543 45566667778
Q ss_pred eEEeecC
Q 012060 457 IEVWESS 463 (472)
Q Consensus 457 ~~vw~~~ 463 (472)
|-||+.|
T Consensus 314 i~vwd~p 320 (321)
T 3ow8_A 314 IHIYDCP 320 (321)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999965
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.12 Score=50.36 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=117.5
Q ss_pred cccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe----CCeEEE-EecCCCCC
Q 012060 169 DNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS----PTTVFS-SLVCPHKE 241 (472)
Q Consensus 169 ~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l----~g~IYA-Gg~~~~~l 241 (472)
..+.++++. ++.+++.|+ .+| .+..||..+.+-...-.....-. +++.. ++.+++ |+.+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~--~d~-----~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 165 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSS--FDK-----TLKVWDTNTLQTADVFNFEETVY---SHHMSPVSTKHCLVAVGTRG---- 165 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEE--TTS-----EEEEEETTTTEEEEEEECSSCEE---EEEECSSCSSCCEEEEEESS----
T ss_pred CcEEEEEEccCCCcEEEEEe--CCC-----eEEEeeCCCCccceeccCCCcee---eeEeecCCCCCcEEEEEcCC----
Confidence 334445544 445677776 444 45667766654333222222111 23332 223444 6544
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC--
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG-- 319 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~-- 319 (472)
..|..||..+.+++..+... ......+.+.+-+..++++|+.+ +.|..||.+++............
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGH------RQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SSEEEEESSSSCCCEEECCC------CSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CeEEEEeCCCcceeeeecCC------CCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCccccccccccccc
Confidence 46889999885543333210 01112344445555577777744 46999999887522222211000
Q ss_pred ----CC--CcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE--EEC
Q 012060 320 ----RS--ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH--CYK 391 (472)
Q Consensus 320 ----~~--~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~ 391 (472)
.. .-....+..++... ++..+++|+.++....-|+++-+. ........... .... ....+. .-.
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~--~~~~----~~~~~~~~~~~ 305 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN--SKKG----LKFTVSCGCSS 305 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--CSSC----CCCEECCSSSS
T ss_pred ceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--cccc----ceeEEecCCCc
Confidence 00 00111122222233 566777888887655445543320 00000000000 0000 011111 123
Q ss_pred CEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeecCCC
Q 012060 392 NQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 392 g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~~ 465 (472)
..+++..++.|.+|+-... .. .+.+-+ ..+.|+.+++--| +++++=.+...|-||+....
T Consensus 306 ~~~~~~~~~~i~v~d~~~~--------~~-~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSG--------EQ-ITMLKG-----HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CEEEEEETTEEEEEETTTC--------CE-EEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred eEEEEecCCEEEEEECcCC--------cc-eeeecc-----CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4555667789999986422 11 111222 3457888888643 45556566678999987653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.93 E-value=0.12 Score=49.66 Aligned_cols=289 Identities=10% Similarity=0.087 Sum_probs=132.6
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-C--CCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-S--HSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~--~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++...|. +.++++.+ |.|..||... . .......+-+.+.++++. ++.+++.|+ .+| .+..||..+.
T Consensus 13 ~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg-----~i~vwd~~~~ 84 (372)
T 1k8k_C 13 CHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--TDR-----NAYVWTLKGR 84 (372)
T ss_dssp EEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--TTS-----CEEEEEEETT
T ss_pred EEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--CCC-----eEEEEECCCC
Confidence 3444444 44443332 3477777332 1 122222222334445544 566777777 454 3556666666
Q ss_pred ccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEE
Q 012060 207 HWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Ly 284 (472)
++.....+......+.+++.. ++.+++ |+.+ ..|-.||..+.++...+...... .......+.+.+ ++.++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l 157 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHIKKP--IRSTVLSLDWHP-NSVLL 157 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEECTT--CCSCEEEEEECT-TSSEE
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcceeeeeeecc--cCCCeeEEEEcC-CCCEE
Confidence 654433222222333335544 344444 6544 46778888874310000000000 001112233333 56666
Q ss_pred EEEEeCCCccccceEEEEcCC------------------CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc
Q 012060 285 GSAIAWGAFGYSGYVRMWDPR------------------SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 285 v~Gg~~g~~~~~~sve~yDp~------------------~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
++|+.+ +.|..||.+ +++++-+.... ...+..++... ++.++++|+.
T Consensus 158 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~ 222 (372)
T 1k8k_C 158 AAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--------CGWVHGVCFSA-NGSRVAWVSH 222 (372)
T ss_dssp EEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--------SSCEEEEEECS-SSSEEEEEET
T ss_pred EEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCC--------CCeEEEEEECC-CCCEEEEEeC
Confidence 766643 468999954 44433333222 11111222233 5667778888
Q ss_pred CCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEEe-cCCeEEEeeccc----cccccccC---
Q 012060 347 SGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFVG-RGGSLEVWSRVR----EGRNRSCS--- 417 (472)
Q Consensus 347 ~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~~-~g~~~~v~~~~~----~~~~~~~~--- 417 (472)
++....-|+++-+ .+.. +..... .-..++ .-+++++++ .++.|.+|+-.. +.....+.
T Consensus 223 d~~i~i~d~~~~~-----~~~~----~~~~~~----~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 223 DSTVCLADADKKM-----AVAT----LASETL----PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp TTEEEEEEGGGTT-----EEEE----EECSSC----CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred CCEEEEEECCCCc-----eeEE----EccCCC----CeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccc
Confidence 8765544444322 2221 111111 112233 235665555 458899998754 10000000
Q ss_pred ---------Ccce-----eeccc------cccccCCCCceEEEe-ecCc----eEEEeeeccceeEEeecCC
Q 012060 418 ---------EGLF-----RRNFV------DRVEDSGRGAISRID-AGGN----RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 418 ---------~~~~-----r~~~~------~~~~~~~~~~i~~~~-~gg~----r~f~~~~~~~~~~vw~~~~ 464 (472)
-+.| +.... ........+.|+.++ +--| ++++|=.+-..|-||+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0000 00000 111113455799997 4344 7888888888999998643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.01 Score=57.88 Aligned_cols=194 Identities=10% Similarity=-0.015 Sum_probs=110.3
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+-++.||+..| ..|. +..+|+.+.+-..-- +...-.+. +++..++.||+.-+ ..+.+-+||+.|.
T Consensus 59 GL~~~~~~Ly~stG--~~g~-----v~~iD~~Tgkv~~~~-l~~~~Fge-Git~~g~~Ly~ltw---~~~~v~V~D~~Tl 126 (268)
T 3nok_A 59 GLVFHQGHFFESTG--HQGT-----LRQLSLESAQPVWME-RLGNIFAE-GLASDGERLYQLTW---TEGLLFTWSGMPP 126 (268)
T ss_dssp EEEEETTEEEEEET--TTTE-----EEECCSSCSSCSEEE-ECTTCCEE-EEEECSSCEEEEES---SSCEEEEEETTTT
T ss_pred eEEEECCEEEEEcC--CCCE-----EEEEECCCCcEEeEE-CCCCccee-EEEEeCCEEEEEEc---cCCEEEEEECCcC
Confidence 44557899999999 4553 778898887754432 32211223 38888999999422 2568999999998
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
+++.+|.- .+..|-.. .-++.||++- | .+.|..+||.+.+++=+..-. ...+.-.-+-.+
T Consensus 127 ~~~~ti~~-~~eGwGLt--------~Dg~~L~vSd---G----s~~l~~iDp~T~~v~~~I~V~---~~g~~v~~lNeL- 186 (268)
T 3nok_A 127 QRERTTRY-SGEGWGLC--------YWNGKLVRSD---G----GTMLTFHEPDGFALVGAVQVK---LRGQPVELINEL- 186 (268)
T ss_dssp EEEEEEEC-SSCCCCEE--------EETTEEEEEC---S----SSEEEEECTTTCCEEEEEECE---ETTEECCCEEEE-
T ss_pred cEEEEEeC-CCceeEEe--------cCCCEEEEEC---C----CCEEEEEcCCCCeEEEEEEeC---CCCccccccccc-
Confidence 87777764 12344433 2367888873 3 358999999999854332221 111111100011
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
...+++||+-.-.++.....|.++-+--.|..++.+.+.....+......--|||.- +++||+++.
T Consensus 187 -e~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 187 -ECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -EEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -EEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 223789996554455555445554442225555542111000011111134677776 579999886
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.13 Score=49.46 Aligned_cols=236 Identities=12% Similarity=0.117 Sum_probs=115.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-C--CeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P--TTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~--g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++..++.|+ .+| ++..||....++..+..+......+.+++.. + +.+++ |+.+ ..|-.||..+.+
T Consensus 22 ~~~~l~~~~--~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~ 90 (379)
T 3jrp_A 22 YGKRLATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVLIWKEENGR 90 (379)
T ss_dssp SSSEEEEEE--TTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SCEEEEEEETTE
T ss_pred CCCEEEEEE--CCC-----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC----CEEEEEEcCCCc
Confidence 466777777 455 3445555544444444343333344345554 2 44444 6554 368899988843
Q ss_pred --cccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCee--eeEEcCCCCCCCCcccccc
Q 012060 254 --ISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEV--VWETNEPGSGRSARFGDSF 328 (472)
Q Consensus 254 --~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~--vW~~~~~~~~~~~R~~~~~ 328 (472)
++..+.. +......+.+.+.. +.++++|+. .+.|..||.+++.. ....... ...+
T Consensus 91 ~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~--------~~~v 150 (379)
T 3jrp_A 91 WSQIAVHAV------HSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAH--------AIGV 150 (379)
T ss_dssp EEEEEEECC------CSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCTTSCCCEEEEECC--------TTCE
T ss_pred eeEeeeecC------CCcceEEEEeCCCCCCCEEEEecC------CCcEEEEecCCCCceeeEEecCC--------CCce
Confidence 1111110 00111223344431 556666653 34799999998841 1122111 1111
Q ss_pred cceeeeec------------CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-C---C
Q 012060 329 ADVDVDVD------------ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-K---N 392 (472)
Q Consensus 329 ~d~~v~~~------------~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~---g 392 (472)
..++.... ++.++++|+.++....-|++.- ...|..+.. +..... .-..++.. + +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~h~~----~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLEST----LEGHSD----WVRDVAWSPTVLLR 221 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT-TTEEEEEEE----ECCCSS----CEEEEEECCCCSSS
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC-CcceeeEEE----EecccC----cEeEEEECCCCCCC
Confidence 11111221 5788889998887654455432 333555543 222221 11223322 2 5
Q ss_pred EEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 393 QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 393 ~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+++++++ +.|.+|+-... ... ..+..... ....+.|+.+++ -|..|++.-. ...|-||+..
T Consensus 222 ~~l~s~~~dg~i~iwd~~~~------~~~-~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 222 SYLASVSQDRTCIIWTQDNE------QGP-WKKTLLKE--EKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp EEEEEEETTSCEEEEEESST------TSC-CEEEESSS--SCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred CeEEEEeCCCEEEEEeCCCC------Ccc-ceeeeecc--ccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 6666544 88999986422 101 11111111 123456887777 5556665555 4669999865
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.25 Score=48.94 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=105.4
Q ss_pred cceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCC-CcccccccceeEEecCCeEEEEEEeCCCcc
Q 012060 219 ATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGA-SSKNMAVGKLTWIPATGVVLGSAIAWGAFG 294 (472)
Q Consensus 219 ~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~-~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~ 294 (472)
..+.+++.. ++.++| |+.+ .+|-.||..+.+...++.++... .-+.-....+.|.+....++++|+.+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~d----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d---- 153 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSED----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD---- 153 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETT----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT----
T ss_pred CCEEEEEeCCCCCCEEEEEeCC----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC----
Confidence 344345554 455666 6544 47899999885311111110000 00000112233444443566776643
Q ss_pred ccceEEEEcCCCCeeeeEEc--CCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC
Q 012060 295 YSGYVRMWDPRSGEVVWETN--EPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS 372 (472)
Q Consensus 295 ~~~sve~yDp~~~~~vW~~~--~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~ 372 (472)
+.|..||.++++++.+.. .. ...+.+++... ++.++++|+.++.+..-|+++ ...+..
T Consensus 154 --g~i~iwd~~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-----~~~~~~---- 213 (402)
T 2aq5_A 154 --NVILVWDVGTGAAVLTLGPDVH--------PDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK-----GTVVAE---- 213 (402)
T ss_dssp --SCEEEEETTTTEEEEEECTTTC--------CSCEEEEEECT-TSSCEEEEETTSEEEEEETTT-----TEEEEE----
T ss_pred --CEEEEEECCCCCccEEEecCCC--------CCceEEEEECC-CCCEEEEEecCCcEEEEeCCC-----Cceeee----
Confidence 469999999999777663 22 12222222333 667777888887655444443 223322
Q ss_pred c-ccCCCCCCCcCeEEEEECCEEEEec-----CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cC
Q 012060 373 M-ISSSGNNNGENKLIHCYKNQVFVGR-----GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GG 444 (472)
Q Consensus 373 m-~~~~~~~~~~~~~~~~~~g~l~~~~-----g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg 444 (472)
+ .... + .........-++++++++ ++.|.+|+-... .+.+... -++ ..+.|..+.+ .|
T Consensus 214 ~~~~~~-~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~------~~~~~~~-~~~-----~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 214 KDRPHE-G-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL------EEPLSLQ-ELD-----TSSGVLLPFFDPDT 279 (402)
T ss_dssp EECSSC-S-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC------SSCSEEE-ECC-----CCSSCEEEEEETTT
T ss_pred eccCCC-C-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc------cCCceEE-ecc-----CCCceeEEEEcCCC
Confidence 1 0111 0 001222223467777765 589999987532 1111011 011 2234666655 57
Q ss_pred ceEEEeeeccceeEEeecCCC
Q 012060 445 NRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 445 ~r~f~~~~~~~~~~vw~~~~~ 465 (472)
..||++=.+...|-||+....
T Consensus 280 ~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp TEEEEEETTCSCEEEEEECSS
T ss_pred CEEEEEEcCCCeEEEEEecCC
Confidence 789888877778999986643
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00056 Score=56.73 Aligned_cols=82 Identities=21% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC-CCCCCCEEE-cCChhhHHHHhhccccCc---------ccCCC
Q 012060 15 GDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPNPIFI-DRDPDVFSVLLSLLRSNR---------LPSTA 82 (472)
Q Consensus 15 ~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~~vfi-Drdp~~F~~IL~flrtg~---------l~~~~ 82 (472)
++.|+|.- +|+.|.+++.+ |.. |.+++.|+... +..+++|-+ ++++.+++.|++|++.-+ -.+++
T Consensus 3 ~~~v~L~SsDg~~f~V~~~v-A~~--S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~ 79 (99)
T 1hv2_A 3 QDFVTLVSKDDKEYEISRSA-AMI--SPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE 79 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHH-HTT--CHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCC
T ss_pred CcEEEEEecCCCEEEECHHH-HHH--hHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCC
Confidence 45788887 99999999997 444 78999999753 334466745 899999999999997643 11111
Q ss_pred ---CCcchHHHHhhhhhcCc
Q 012060 83 ---SRFSKQELADEALYYGI 99 (472)
Q Consensus 83 ---~~~~v~~Ll~eA~~~ql 99 (472)
+...+.+|+-+|+||+|
T Consensus 80 w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 80 FEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHhCc
Confidence 22456788889999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.025 Score=54.65 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=98.9
Q ss_pred eeccCCcEEEeee--CceEEeecc--c-CCCCCccccccccceeeee-C--CeEEEEcCcCCCCceecceeeeecCCCCc
Q 012060 136 ASSDDGSLWIAHG--GQISVYDWN--L-SHSVTVRTHLDNITSIRHV-W--SDVAAVGSDYSSGIHFYDLSSSRHVASAH 207 (472)
Q Consensus 136 ~~~~~g~l~va~G--G~Ve~YDW~--~-~~m~~~R~~~~~v~~v~~l-~--~~lYavGG~~~~g~~~l~sve~ydp~t~~ 207 (472)
..|. +.++++.+ |.|..||.. . ......+.+-+.+.++++. + +.+++.|+ .+| .+..||..+.+
T Consensus 19 ~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg-----~v~iwd~~~~~ 90 (379)
T 3jrp_A 19 LDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVLIWKEENGR 90 (379)
T ss_dssp ECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTS-----CEEEEEEETTE
T ss_pred EcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec--cCC-----EEEEEEcCCCc
Confidence 3344 44443333 457777733 1 1111222233444455553 2 56777777 455 45667777777
Q ss_pred cccCCCCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec----
Q 012060 208 WTDPSDPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA---- 279 (472)
Q Consensus 208 W~~~a~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~---- 279 (472)
|..+..+......+.+++... +.+++ |+.+ ..|-.||..+.+....+-.. -.......+.+.+.
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD----GKVSVVEFKENGTTSPIIID----AHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SEEEEEECCTTSCCCEEEEE----CCTTCEEEEEECCCC---
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC----CcEEEEecCCCCceeeEEec----CCCCceEEEEEcCccccc
Confidence 665554443334444455553 34444 6544 47889999884311111000 00001122334333
Q ss_pred --------CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC--CeEEEEcccCCC
Q 012060 280 --------TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE--LTLFKICSKSGD 349 (472)
Q Consensus 280 --------~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~ 349 (472)
++.++++|+.+| .|..||.++++..|.......... ..+.+++....+ +.+++.|+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~----~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp -------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred cccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEeccc----CcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 577777777444 699999988865565544311111 112222233322 788889998887
Q ss_pred ccccccc
Q 012060 350 IAMADLR 356 (472)
Q Consensus 350 ~~~~dl~ 356 (472)
...-|++
T Consensus 233 i~iwd~~ 239 (379)
T 3jrp_A 233 CIIWTQD 239 (379)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 5543444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.032 Score=54.14 Aligned_cols=196 Identities=10% Similarity=-0.028 Sum_probs=112.5
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+-++.||+..| ..|. +++..+|+.+.+-..--++...-.+. +++..++.||+.-+ ..+.+-+||+.|.
T Consensus 47 GL~~~~~~LyestG--~~g~---S~v~~vD~~Tgkv~~~~~l~~~~Fge-Git~~g~~ly~ltw---~~~~v~v~D~~t~ 117 (262)
T 3nol_A 47 GFFYRNGYFYESTG--LNGR---SSIRKVDIESGKTLQQIELGKRYFGE-GISDWKDKIVGLTW---KNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEETTEEEEEEE--ETTE---EEEEEECTTTCCEEEEEECCTTCCEE-EEEEETTEEEEEES---SSSEEEEEETTTC
T ss_pred eEEEECCEEEEECC--CCCC---ceEEEEECCCCcEEEEEecCCcccee-EEEEeCCEEEEEEe---eCCEEEEEECccC
Confidence 44556899999988 3442 46778899888755543443222233 38889999999422 2568999999998
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
+++.+|.-. +..|-... -++.||++ +| .+.|..+||.+.+++=+..-. ...|.-..+-.+
T Consensus 118 ~~~~ti~~~-~eG~glt~--------dg~~L~~S---dG----s~~i~~iDp~T~~v~~~I~V~---~~g~~~~~lNEL- 177 (262)
T 3nol_A 118 RQVRSFNYD-GEGWGLTH--------NDQYLIMS---DG----TPVLRFLDPESLTPVRTITVT---AHGEELPELNEL- 177 (262)
T ss_dssp CEEEEEECS-SCCCCEEE--------CSSCEEEC---CS----SSEEEEECTTTCSEEEEEECE---ETTEECCCEEEE-
T ss_pred cEEEEEECC-CCceEEec--------CCCEEEEE---CC----CCeEEEEcCCCCeEEEEEEec---cCCcccccccee-
Confidence 877766552 24444432 25678886 23 257999999999854332221 011111100011
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
...+++||+-.-.++.....|.++-+--.|..++.+.+....... ....--|||.- .++|||++.
T Consensus 178 -e~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~-~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 178 -EWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS-PIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -EEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS-SCCCEEEEEEETTTTEEEEEET
T ss_pred -EEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC-cCCceEEEEEcCCCCEEEEECC
Confidence 223789996655555555556555442225555542221100111 11134678876 479999987
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.31 Score=47.88 Aligned_cols=181 Identities=16% Similarity=0.150 Sum_probs=93.7
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec-CCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
.|++|+.+ .+|-.||..+.+++..+... + .....+.+.+. ++.++++|+.+ +.|..||.++++
T Consensus 168 ~l~t~s~D----~~v~lwd~~~~~~~~~~~~h--~----~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~ 231 (354)
T 2pbi_B 168 QILTASGD----GTCALWDVESGQLLQSFHGH--G----ADVLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQ 231 (354)
T ss_dssp EEEEEETT----SEEEEEETTTCCEEEEEECC--S----SCEEEEEECCCSSCCEEEEEETT------SCEEEEETTTCC
T ss_pred EEEEEeCC----CcEEEEeCCCCeEEEEEcCC--C----CCeEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 34445433 47889999986544333210 0 00111222222 45677777744 469999999999
Q ss_pred eeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EE
Q 012060 309 VVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LI 387 (472)
Q Consensus 309 ~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~ 387 (472)
++-++... ...+..++... ++.+++.|+.++....-|++.- ..+.. ...... .... .+
T Consensus 232 ~~~~~~~h--------~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-----~~~~~----~~~~~~---~~~~~~~ 290 (354)
T 2pbi_B 232 CVQAFETH--------ESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-----REVAI----YSKESI---IFGASSV 290 (354)
T ss_dssp EEEEECCC--------SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-----EEEEE----ECCTTC---CSCEEEE
T ss_pred EEEEecCC--------CCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-----cEEEE----EcCCCc---ccceeEE
Confidence 66665433 11111111222 5778889999887654455431 11111 000000 0111 22
Q ss_pred EE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEee
Q 012060 388 HC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 388 ~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
+. .+|++++++ ++.|.+|+-... +.+ ..+.+ ..+.|+.+++--| +++++=.+-..|-||+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~-------~~~--~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKG-------SRV--SILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC-------SEE--EEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCC-------ceE--EEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 22 245555554 378999985311 111 11222 3457998888533 4566666667888985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.19 Score=48.66 Aligned_cols=187 Identities=13% Similarity=0.175 Sum_probs=100.8
Q ss_pred EEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++... +.+.| |+.+ .+|-.||..+.+++..+...... ...+.+.+ ++..+++|+. .+.|..
T Consensus 86 ~~~~~~~~~l~s~s~D----~~i~lWd~~~~~~~~~~~~~~~~------~~~~~~sp-dg~~l~~g~~------dg~v~i 148 (321)
T 3ow8_A 86 VDISHTLPIAASSSLD----AHIRLWDLENGKQIKSIDAGPVD------AWTLAFSP-DSQYLATGTH------VGKVNI 148 (321)
T ss_dssp EEECSSSSEEEEEETT----SEEEEEETTTTEEEEEEECCTTC------CCCEEECT-TSSEEEEECT------TSEEEE
T ss_pred EEECCCCCEEEEEeCC----CcEEEEECCCCCEEEEEeCCCcc------EEEEEECC-CCCEEEEEcC------CCcEEE
Confidence 44433 34555 5444 47889999986644444321111 12233333 5566666653 357999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNN 381 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~ 381 (472)
||.++++..++.... +..+..++... ++.+.+.|+.++....-|+++ ...+.. +.....
T Consensus 149 ~~~~~~~~~~~~~~~--------~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~-----~~~~~~----~~~h~~--- 207 (321)
T 3ow8_A 149 FGVESGKKEYSLDTR--------GKFILSIAYSP-DGKYLASGAIDGIINIFDIAT-----GKLLHT----LEGHAM--- 207 (321)
T ss_dssp EETTTCSEEEEEECS--------SSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----TEEEEE----ECCCSS---
T ss_pred EEcCCCceeEEecCC--------CceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-----CcEEEE----EcccCC---
Confidence 999999877776654 11121222233 677788899887654434432 223322 111111
Q ss_pred CcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeecccee
Q 012060 382 GENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGI 457 (472)
Q Consensus 382 ~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~ 457 (472)
.=..++. -+++++++++ +.|.+|+-... .. .+.+-+ ..+.|..+++-- ++++++=.+...|
T Consensus 208 -~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--------~~-~~~~~~-----h~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 208 -PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--------NL-AGTLSG-----HASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp -CCCEEEECTTSCEEEEECTTSCEEEEETTTC--------CE-EEEECC-----CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--------ce-eEEEcC-----CCCceEEEEECCCCCEEEEEeCCCcE
Confidence 0112222 2566666655 77999975321 11 122222 245688888852 2445555666789
Q ss_pred EEeecC
Q 012060 458 EVWESS 463 (472)
Q Consensus 458 ~vw~~~ 463 (472)
-||+..
T Consensus 273 ~iwd~~ 278 (321)
T 3ow8_A 273 KVWDVG 278 (321)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 999864
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.026 Score=54.93 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=107.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCccccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEI 258 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~ 258 (472)
+.||+..|. .+ -+++..+|+.+.+-...-++...-... +++..++.||+.-+ ..+.+.+||+.|.+++.+|
T Consensus 32 g~Lyvstg~--~~---~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~g~~lyv~t~---~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 32 DTLFESTGL--YG---RSSVRQVALQTGKVENIHKMDDSYFGE-GLTLLNEKLYQVVW---LKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp TEEEEEECS--TT---TCEEEEEETTTCCEEEEEECCTTCCEE-EEEEETTEEEEEET---TCSEEEEEETTTTEEEEEE
T ss_pred CeEEEECCC--CC---CCEEEEEECCCCCEEEEEecCCCcceE-EEEEeCCEEEEEEe---cCCEEEEEECCCCcEEEEE
Confidence 799998772 22 256788899888755433332222334 38888889999533 2568999999998877766
Q ss_pred ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcc---cccccceeeee
Q 012060 259 GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARF---GDSFADVDVDV 335 (472)
Q Consensus 259 ~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~---~~~~~d~~v~~ 335 (472)
.-..+..|.. ..-.+.||++- | .+.|..+||++.+++=+..-. ...|. --.+ ..
T Consensus 103 ~~g~~~g~gl--------t~Dg~~l~vs~---g----s~~l~viD~~t~~v~~~I~Vg---~~~~p~~~~nel-----e~ 159 (266)
T 2iwa_A 103 THQMKDGWGL--------ATDGKILYGSD---G----TSILYEIDPHTFKLIKKHNVK---YNGHRVIRLNEL-----EY 159 (266)
T ss_dssp ECCSSSCCEE--------EECSSSEEEEC---S----SSEEEEECTTTCCEEEEEECE---ETTEECCCEEEE-----EE
T ss_pred ECCCCCeEEE--------EECCCEEEEEC---C----CCeEEEEECCCCcEEEEEEEC---CCCcccccceeE-----EE
Confidence 4311123332 12357788862 3 358999999999855333311 11111 1121 22
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCC-cccCCCCCCCcCeEEEEE--CCEEEEecC
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPS-MISSSGNNNGENKLIHCY--KNQVFVGRG 399 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~--~g~l~~~~g 399 (472)
.+++||+-...++.....|..+-+--.|..++.+.+. +...+. ....-.+|+.- ++++||+++
T Consensus 160 ~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~-~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 160 INGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR-DIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp ETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT-TCCCEEEEEEETTTTEEEEEET
T ss_pred ECCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc-ccCceEEEEEcCCCCEEEEECC
Confidence 2789998776666665556655441124444421000 001111 01123678877 458999987
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.64 E-value=0.2 Score=50.45 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=65.8
Q ss_pred EEEEe--CCeEEE-EecCCCCCceeEEEeCCCcc---cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCcccc
Q 012060 223 AIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQ---ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 223 ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~---~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
+++.. ++.++| ++.+ ..|-.||..+.+ ++..+.. +......+.+.+....++++|+. .
T Consensus 236 ~v~~~p~~~~~l~s~~~d----g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~------d 299 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVADD----QKLMIWDTRNNNTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSA------D 299 (430)
T ss_dssp EEEECSSCTTEEEEEETT----SEEEEEETTCSCSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEET------T
T ss_pred eeEEeCCCCCEEEEEeCC----CeEEEEECCCCCCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeC------C
Confidence 35554 456777 5443 478899999842 2211110 01112334455556668888774 3
Q ss_pred ceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 297 GYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 297 ~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
+.|.+||.++ ++++-+.... ...+..+...-.+..+++.|+.++.+..-|++..
T Consensus 300 g~v~vwd~~~~~~~~~~~~~h--------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 300 KTVALWDLRNLKLKLHSFESH--------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp SEEEEEETTCTTSCSEEEECC--------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CeEEEEeCCCCCCCeEEeecC--------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 4799999998 4444444433 2333344455556689999999887766566653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.055 Score=62.17 Aligned_cols=259 Identities=12% Similarity=0.102 Sum_probs=127.1
Q ss_pred CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~ 226 (472)
|.|..||... ........+.+.+.++++- ++...+.|+ .+| ++..||..+.+....... ...+.+++.
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg-----~i~vwd~~~~~~~~~~~~---~~~v~~~~~ 1052 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS--EDS-----VIQVWNWQTGDYVFLQAH---QETVKDFRL 1052 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC--SSS-----BEEEEETTTTEEECCBCC---SSCEEEEEE
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc--CCC-----EEEEEECCCCceEEEecC---CCcEEEEEE
Confidence 4588888332 2222222222333344432 556677777 454 466777777665543322 222223555
Q ss_pred eCC-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 227 SPT-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 227 l~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
..+ .+++++.+ .+|..||..+.+++..+.... .......+.+ ++.++++|+.+ ++|..||..
T Consensus 1053 ~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~~~~------~~v~~~~~s~-d~~~l~s~s~d------~~v~iwd~~ 1115 (1249)
T 3sfz_A 1053 LQDSRLLSWSFD----GTVKVWNVITGRIERDFTCHQ------GTVLSCAISS-DATKFSSTSAD------KTAKIWSFD 1115 (1249)
T ss_dssp CSSSEEEEEESS----SEEEEEETTTTCCCEEEECCS------SCCCCEEECS-SSSSCEEECCS------SCCCEECSS
T ss_pred cCCCcEEEEECC----CcEEEEECCCCceeEEEcccC------CcEEEEEECC-CCCEEEEEcCC------CcEEEEECC
Confidence 554 45545443 478999999855333322110 0112233333 55556666543 468899999
Q ss_pred CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcC
Q 012060 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGEN 384 (472)
Q Consensus 306 ~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~ 384 (472)
+++++.+.... ...+..++... ++.+.++|+.+|....-|+++-+ ......+..... ...... .-
T Consensus 1116 ~~~~~~~l~~h--------~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~----~v 1181 (1249)
T 3sfz_A 1116 LLSPLHELKGH--------NGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TATHGG----WV 1181 (1249)
T ss_dssp SSSCSBCCCCC--------SSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCS----CC
T ss_pred CcceeeeeccC--------CCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEecccccccc-ccccCc----eE
Confidence 88855544433 11222222333 67788899988875543444322 000000000000 001110 11
Q ss_pred eEEE-EECCEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeec
Q 012060 385 KLIH-CYKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWES 462 (472)
Q Consensus 385 ~~~~-~~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~ 462 (472)
..++ .-+|+..++.+|.|.+|+-... ..-. .++. ..+.|+.+++--| +++++=.+...|-||+-
T Consensus 1182 ~~l~fs~dg~~l~s~~g~v~vwd~~~g----~~~~-~~~~---------~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1182 TDVCFSPDSKTLVSAGGYLKWWNVATG----DSSQ-TFYT---------NGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CEEEECTTSSCEEEESSSEEEBCSSSC----BCCC-CCCC---------SSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEEECCCCCEEEECCCeEEEEECCCC----ceee-eeec---------cCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 2233 3356677777899999985321 1111 1111 2445776666544 34555556678889973
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.63 E-value=0.085 Score=53.31 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=87.0
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCC---eeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSG---EVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDI 350 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~---~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~ 350 (472)
+.|.+.++.++++|+. .+.|..||.+++ +.++...+. ...+-.++..-.+..++++|+.++.+
T Consensus 237 v~~~p~~~~~l~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~i~~~p~~~~~l~tg~~dg~v 302 (430)
T 2xyi_A 237 VAWHLLHESLFGSVAD------DQKLMIWDTRNNNTSKPSHTVDAH--------TAEVNCLSFNPYSEFILATGSADKTV 302 (430)
T ss_dssp EEECSSCTTEEEEEET------TSEEEEEETTCSCSSSCSEEEECC--------SSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eEEeCCCCCEEEEEeC------CCeEEEEECCCCCCCcceeEeecC--------CCCeEEEEeCCCCCCEEEEEeCCCeE
Confidence 4455557778887763 357999999987 455665544 12222223344455699999999876
Q ss_pred ccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeecccccccc-------ccCCc
Q 012060 351 AMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRVREGRNR-------SCSEG 419 (472)
Q Consensus 351 ~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~-------~~~~~ 419 (472)
..-|++.... +-..+. .... .-..++.. +..++++++ +.|-+|+--...+.. +..+.
T Consensus 303 ~vwd~~~~~~-~~~~~~-------~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 303 ALWDLRNLKL-KLHSFE-------SHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEETTCTTS-CSEEEE-------CCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEeCCCCCC-CeEEee-------cCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 6556664321 011111 1111 11222322 335666653 889999865421000 00111
Q ss_pred ceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEEeecC
Q 012060 420 LFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 420 ~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~ 463 (472)
++ . +- ..++.|+++++--+ .++++=.+-..|.||+.+
T Consensus 371 ~~-~-~~-----~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 371 LF-I-HG-----GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EE-E-CC-----CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EE-E-cC-----CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 21 1 11 13457999888643 478888888999999854
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.025 Score=57.32 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=76.5
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
++.+.|+|+ .+| ++..||..+.+-............+.+++.. ++.+++ |+.+ .+|-.||.++.+.
T Consensus 131 ~~~~lasGs--~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D----~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGS--KGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME----GTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEE--TTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS----SCEEEEETTSCEE
T ss_pred CCCEEEEEe--CCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC----CEEEEeeccCCce
Confidence 456778887 565 3556666555433222222222334356664 454444 6544 4688999887331
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
.. +.. ..-..+....+.+. -++.++++|+.+ +.|..||.+... ++++... ...+..++..
T Consensus 200 ~~-~~~---~~~~~~~~~~~~~~-~~~~~l~~g~~d------g~i~~wd~~~~~-~~~~~~h--------~~~v~~v~~~ 259 (435)
T 4e54_B 200 RV-FAS---SDTINIWFCSLDVS-ASSRMVVTGDNV------GNVILLNMDGKE-LWNLRMH--------KKKVTHVALN 259 (435)
T ss_dssp EE-EEC---CSSCSCCCCCEEEE-TTTTEEEEECSS------SBEEEEESSSCB-CCCSBCC--------SSCEEEEEEC
T ss_pred eE-Eec---cCCCCccEEEEEEC-CCCCEEEEEeCC------CcEeeeccCcce-eEEEecc--------cceEEeeeec
Confidence 10 000 00011111222333 356677777643 469999987654 2332221 1112222233
Q ss_pred ecCCeEEEEcccCCCcccccccccC
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
-.+..+++.|+.++....-|++..+
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCceEEEEecCcceeeEEeccccc
Confidence 3466789899988876554665543
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00099 Score=54.89 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=57.4
Q ss_pred cEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCc--------c---c
Q 012060 17 RVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNR--------L---P 79 (472)
Q Consensus 17 ~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~--------l---~ 79 (472)
.|+|.- +|+.|.++|.+ |.. |.+++.|+... +..+++|-+ ++++.+++.|++|++.-+ + .
T Consensus 2 ~v~L~SsDg~~f~V~~~~-A~~--S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~ 78 (96)
T 2fnj_C 2 YVKLISSDGHEFIVKREH-ALT--SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 78 (96)
T ss_dssp EEEEECTTSCEEEEEHHH-HTT--SHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred eEEEEecCCCEEEeCHHH-HHH--hHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcc
Confidence 467766 89999999997 444 78999998742 333456644 899999999999997633 1 2
Q ss_pred CCCCCcchHHHHhhhhhcCc
Q 012060 80 STASRFSKQELADEALYYGI 99 (472)
Q Consensus 80 ~~~~~~~v~~Ll~eA~~~ql 99 (472)
+ +...+.+|+.+|+||+|
T Consensus 79 v--d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 I--APEIALELLMAANFLDC 96 (96)
T ss_dssp C--CTTTHHHHHHHHHHHTC
T ss_pred c--CHHHHHHHHHHHHHhCc
Confidence 2 23678899999999986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.15 Score=55.20 Aligned_cols=272 Identities=11% Similarity=0.095 Sum_probs=131.7
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +..+++.+ |.|..||+.. ........+-+.+.++++. ++...++|+ .+| .+..||..+.+.
T Consensus 18 ~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg-----~i~vw~~~~~~~ 89 (814)
T 3mkq_A 18 GIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS--DDF-----RIRVFNYNTGEK 89 (814)
T ss_dssp EEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE--TTS-----EEEEEETTTCCE
T ss_pred EEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe--CCC-----eEEEEECCCCcE
Confidence 3444454 44443333 4588888543 2222222222333344443 566777777 444 456677666554
Q ss_pred ccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCc-ccccccccccCCCcccccccceeEEecCCeEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTL-QISSEIGRQSGASSKNMAVGKLTWIPATGVVLG 285 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~-~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv 285 (472)
... +......+.+++.. ++. |++|+.+ .+|..||..+. +....+. -+....+...|.+.++.+++
T Consensus 90 ~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 90 VVD--FEAHPDYIRSIAVHPTKPYVLSGSDD----LTVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEE--EECCSSCEEEEEECSSSSEEEEEETT----SEEEEEEGGGTSEEEEEEE------CCSSCEEEEEEETTEEEEEE
T ss_pred EEE--EecCCCCEEEEEEeCCCCEEEEEcCC----CEEEEEECCCCceEEEEEc------CCCCcEEEEEEEcCCCCEEE
Confidence 321 22112223235554 343 4445543 47889998873 2111111 01112244556554666777
Q ss_pred EEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee-cCCeEEEEcccCCCcccccccccCCCCcE
Q 012060 286 SAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV-DELTLFKICSKSGDIAMADLRNLGEDPWV 364 (472)
Q Consensus 286 ~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~-~~~~iy~vGg~~g~~~~~dl~s~e~d~W~ 364 (472)
+|+. .++|..||.++++..+...... .....+ ++... -++.++++|+.++....-|+++ ..
T Consensus 158 ~~~~------dg~v~vwd~~~~~~~~~~~~~~----~~~v~~---~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~ 219 (814)
T 3mkq_A 158 SGCL------DRTVKVWSLGQSTPNFTLTTGQ----ERGVNY---VDYYPLPDKPYMITASDDLTIKIWDYQT-----KS 219 (814)
T ss_dssp EEET------TSEEEEEETTCSSCSEEEECCC----TTCCCE---EEECCSTTCCEEEEECTTSEEEEEETTT-----TE
T ss_pred EEeC------CCeEEEEECCCCcceeEEecCC----CCCEEE---EEEEECCCCCEEEEEeCCCEEEEEECCC-----Cc
Confidence 7663 3479999999887666665441 011111 11111 1667777888887644323322 23
Q ss_pred EeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEe
Q 012060 365 YMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRID 441 (472)
Q Consensus 365 ~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~ 441 (472)
.+.. +..... .-..++. -++++++++ .|.|.+|+.... +..+. +- ...+.|..++
T Consensus 220 ~~~~----~~~~~~----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--------~~~~~-~~-----~~~~~v~~~~ 277 (814)
T 3mkq_A 220 CVAT----LEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--------KVEKT-LN-----VGLERSWCIA 277 (814)
T ss_dssp EEEE----EECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTTC--------SEEEE-EC-----CSSSSEEEEE
T ss_pred EEEE----EcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEE-ee-----cCCCcEEEEE
Confidence 3332 111111 1112222 234444444 388999976422 11111 10 1234677776
Q ss_pred ec--CceEEEeeeccceeEEeecCC
Q 012060 442 AG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 442 ~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
+- |.+++++-...+++-+|....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 278 THPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp ECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EccCCCceEEEEEeCCCEEEEEcCC
Confidence 64 445555555567788887554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.41 Score=45.45 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=110.1
Q ss_pred CcEEEeee--CceEEeeccc---CCCCCccccccccceeeee---CCeEEEEcCcCCCCceecceeeeecCCCCccccCC
Q 012060 141 GSLWIAHG--GQISVYDWNL---SHSVTVRTHLDNITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS 212 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~---~~m~~~R~~~~~v~~v~~l---~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a 212 (472)
+..++..+ |.|..||... ....+...+-+.+.++++. ++.+++.|+ .+| ++-.||..+.+|..+.
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s--~D~-----~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVMIWKEENGRWSQIA 93 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE--TTT-----EEEEEEBSSSCBCCCE
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc--CCC-----EEEEEEcCCCceEEEE
Confidence 55553433 3477777432 1111222233344455543 256778887 555 5667787777776554
Q ss_pred CCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec---------
Q 012060 213 DPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA--------- 279 (472)
Q Consensus 213 ~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~--------- 279 (472)
.+......+.+++... +.++| |+.+ ..|-.||..+.+..... ...+ +...-....|.+.
T Consensus 94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d----~~v~~wd~~~~~~~~~~-~~~~---h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 94 VHAVHSASVNSVQWAPHEYGPMLLVASSD----GKVSVVEFKENGTTSPI-IIDA---HAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp EECCCSSCEEEEEECCGGGCSEEEEEETT----SEEEEEEBCSSSCBCCE-EEEC---CSSCEEEEEECCCC--------
T ss_pred EeecCCCceeEEEeCcCCCCcEEEEEECC----CcEEEEEecCCCceeee-eeec---ccCccceEeecCCcccccccCC
Confidence 3332233343455543 44555 6544 47888998773200000 0000 0000111222221
Q ss_pred ---CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC--CeEEEEcccCCCccccc
Q 012060 280 ---TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE--LTLFKICSKSGDIAMAD 354 (472)
Q Consensus 280 ---~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~~~~~d 354 (472)
++.++++|+.+ ++|.+||.++++..|......... ...+-+++....+ +.+++.|+.|+....-|
T Consensus 166 ~~~~~~~l~sgs~D------~~v~lwd~~~~~~~~~~~~~l~~H----~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 166 GTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ----CCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CCCCcceEEEEcCC------CcEEEEEEcCCCceEEEEEEecCC----CCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 24577777744 469999998765335443221111 1112222233322 57888999887755333
Q ss_pred ccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeecc
Q 012060 355 LRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 355 l~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~ 408 (472)
++. +..+|.... +....... .-..++. -+|++++++ .+.|.+|...
T Consensus 236 ~~~-~~~~~~~~~-----~~~~~~~~--~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDN-EQGPWKKTL-----LKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESS-TTSCCEEEE-----SSSSCCSS--CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCC-CCCccceee-----eecccCCC--cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 332 123454322 11011000 1112222 245555554 3789999864
|
| >3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=59.94 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=65.2
Q ss_pred CCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC-C-----CCCCCEEE-cCChhhHHHHhhccccCccc-C-----
Q 012060 15 GDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ-S-----DEPNPIFI-DRDPDVFSVLLSLLRSNRLP-S----- 80 (472)
Q Consensus 15 ~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~-~-----~~~~~vfi-Drdp~~F~~IL~flrtg~l~-~----- 80 (472)
+..|+|.- +|+.|.+++.+... |.+++.|+... . .....|-+ ++++.+++.|+.|++.-+-. .
T Consensus 6 ~~~i~L~SsDG~~F~V~~~vA~~---S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~ 82 (169)
T 3v7d_A 6 TSNVVLVSGEGERFTVDKKIAER---SLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD 82 (169)
T ss_dssp CCEEEEECTTCCEEEEEHHHHTT---SHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred CCeEEEEeCCCCEEEecHHHHHH---hHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence 45777765 78999999998555 78999998642 1 22356645 89999999999999664311 0
Q ss_pred -----------------CCCCcchHHHHhhhhhcCcchHHhhhc
Q 012060 81 -----------------TASRFSKQELADEALYYGIDSQLKSAM 107 (472)
Q Consensus 81 -----------------~~~~~~v~~Ll~eA~~~ql~~l~~~c~ 107 (472)
.-+...+-+|+.+|+||+|.+|++.||
T Consensus 83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c 126 (169)
T 3v7d_A 83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGC 126 (169)
T ss_dssp -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 001134567888999999999999998
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.47 Score=47.93 Aligned_cols=240 Identities=10% Similarity=-0.036 Sum_probs=112.4
Q ss_pred ceeeccCCcEEEeee---CceEEeecc--c-CCCCCccc-cc-cccceeeee-CCeEEEEcCcCCCCceecceeeeecCC
Q 012060 134 FTASSDDGSLWIAHG---GQISVYDWN--L-SHSVTVRT-HL-DNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVA 204 (472)
Q Consensus 134 ~r~~~~~g~l~va~G---G~Ve~YDW~--~-~~m~~~R~-~~-~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~ 204 (472)
+...|. +..+++.| |.|..||.. . ........ .+ ..+.++++- ++..+++|+ .+| .+..+|..
T Consensus 108 ~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~~g-----~v~~~~~~ 179 (450)
T 2vdu_B 108 LRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD--KFG-----DVYSIDIN 179 (450)
T ss_dssp EEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETT
T ss_pred EEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe--CCC-----cEEEEecC
Confidence 334444 44432445 458888854 2 22222111 11 222233432 456667776 444 23344443
Q ss_pred CCccc--cCCCCcCcccceeEEEEeC----CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE
Q 012060 205 SAHWT--DPSDPRIYRATVTAIADSP----TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI 277 (472)
Q Consensus 205 t~~W~--~~a~m~~~R~~~~ava~l~----g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~ 277 (472)
+.... ....+......+.+++... +.+++ |+.+ ..|-.||..+.+.+..+-. -+......+.+.
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~s 250 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD----EHIKISHYPQCFIVDKWLF-----GHKHFVSSICCG 250 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT----SCEEEEEESCTTCEEEECC-----CCSSCEEEEEEC
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC----CcEEEEECCCCceeeeeec-----CCCCceEEEEEC
Confidence 33221 1112222222333355443 44444 6544 4788999988543322110 011112333444
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC-----CCC------------CCCcccccccceeeeecCCeE
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP-----GSG------------RSARFGDSFADVDVDVDELTL 340 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~-----~~~------------~~~R~~~~~~d~~v~~~~~~i 340 (472)
++.++++|+. .+.|.+||.++++++-+.... ... ...-....+.+++....+..|
T Consensus 251 --d~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 251 --KDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp --STTEEEEEES------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred --CCCEEEEEeC------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 7777777763 347999999999866555311 000 000111233344444445566
Q ss_pred EEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecCC---------eEEEeec
Q 012060 341 FKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRGG---------SLEVWSR 407 (472)
Q Consensus 341 y~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g~---------~~~v~~~ 407 (472)
|+.++.++.+..-|+.....+++..+.. +.... .-..++...+.+|++.+. .|++|.-
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~----~~~~~-----~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGDLALKQI----ITFPY-----NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTCEEEEEE----EECSS-----CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEECCCCeEEEEEeccCCCCceeeccE----eccCC-----ceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 6555466655433441112445555554 32222 244567777777777542 3677764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.47 Score=46.11 Aligned_cols=198 Identities=14% Similarity=0.112 Sum_probs=95.3
Q ss_pred EEEeC-CeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 224 IADSP-TTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 224 va~l~-g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
++..+ +.+++|+.+ ..|..||..+.+++..+... ..+...+.+.+ ++.++++|+.+ +.|..|
T Consensus 212 ~~~~~~~~~~~~~~~----g~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~ 274 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPK----GAIFVYQITEKTPTGKLIGH------HGPISVLEFND-TNKLLLSASDD------GTLRIW 274 (425)
T ss_dssp CEEEETTEEEEECGG----GCEEEEETTCSSCSEEECCC------SSCEEEEEEET-TTTEEEEEETT------SCEEEE
T ss_pred EEEcCCCEEEEEcCC----CeEEEEEcCCCceeeeeccC------CCceEEEEECC-CCCEEEEEcCC------CEEEEE
Confidence 34444 444446443 47889999985543333210 00112233444 45555666533 469999
Q ss_pred cCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCC
Q 012060 303 DPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNG 382 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~ 382 (472)
|.++++.+...... ...+..++... ++ ++++|+.++.+..-|+++ ...+.. +.....
T Consensus 275 d~~~~~~~~~~~~~--------~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~-----~~~~~~----~~~~~~---- 331 (425)
T 1r5m_A 275 HGGNGNSQNCFYGH--------SQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ-----NTLLAL----SIVDGV---- 331 (425)
T ss_dssp CSSSBSCSEEECCC--------SSCEEEEEEET-TT-EEEEEETTSEEEEEETTT-----TEEEEE----EECTTC----
T ss_pred ECCCCccceEecCC--------CccEEEEEECC-CC-EEEEEeCCCcEEEEECCC-----CcEeEe----cccCCc----
Confidence 99999877776544 11121222233 44 777888887654334332 233332 111111
Q ss_pred cCeEEEEE-CCEEEEec--CCeEEEeeccccc-ccccc---CCccee---eccccccccCCCC-ceEEEeec--CceEEE
Q 012060 383 ENKLIHCY-KNQVFVGR--GGSLEVWSRVREG-RNRSC---SEGLFR---RNFVDRVEDSGRG-AISRIDAG--GNRLFV 449 (472)
Q Consensus 383 ~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~-~~~~~---~~~~~r---~~~~~~~~~~~~~-~i~~~~~g--g~r~f~ 449 (472)
.-..++.. ++++++++ ++.|.+|+-.... ....+ ....++ -..+...+....+ .|+.+++- |..|++
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Confidence 11122222 34444443 4789999875331 00000 000000 0011111222333 89999985 555655
Q ss_pred eeeccceeEEeec
Q 012060 450 SREDVEGIEVWES 462 (472)
Q Consensus 450 ~~~~~~~~~vw~~ 462 (472)
.- +...|-||+-
T Consensus 412 ~~-~dg~i~iw~~ 423 (425)
T 1r5m_A 412 AY-SLQEGSVVAI 423 (425)
T ss_dssp EE-SSSCCEEEEC
T ss_pred Ee-cCceEEEEee
Confidence 54 4466899984
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.18 Score=53.45 Aligned_cols=241 Identities=9% Similarity=-0.013 Sum_probs=122.0
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeC--CCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDK--STL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp--~t~ 252 (472)
-++.+|+.+. .+ +++..+|..+.+-...-+.. ..-+ +++.. ++ +||++..+ ++|-.||+ .|+
T Consensus 147 p~~~~~vs~~--~d-----~~V~v~D~~t~~~~~~i~~g--~~~~-~v~~spdg~~l~v~~~d----~~V~v~D~~~~t~ 212 (543)
T 1nir_A 147 LPNLFSVTLR--DA-----GQIALVDGDSKKIVKVIDTG--YAVH-ISRMSASGRYLLVIGRD----ARIDMIDLWAKEP 212 (543)
T ss_dssp GGGEEEEEEG--GG-----TEEEEEETTTCCEEEEEECS--TTEE-EEEECTTSCEEEEEETT----SEEEEEETTSSSC
T ss_pred CCCEEEEEEc--CC-----CeEEEEECCCceEEEEEecC--cccc-eEEECCCCCEEEEECCC----CeEEEEECcCCCC
Confidence 3677888876 33 35666777766533211111 1122 25554 33 68885433 68999999 786
Q ss_pred ccccccccccCCCcccccccceeEEe----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCC-CCCCC--ccc
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIP----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPG-SGRSA--RFG 325 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~-~~~~~--R~~ 325 (472)
+++.+|.. .. .|-.+...+ -+..||++... .++|..||..+.+++.+....+ ..... ...
T Consensus 213 ~~~~~i~~---g~----~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 213 TKVAEIKI---GI----EARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp EEEEEEEC---CS----EEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred cEEEEEec---CC----CcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccC
Confidence 65444432 11 122222333 34567776432 3579999999999887765431 00000 001
Q ss_pred ccccceeeeecCCeEEEEcccCCCcccccccccCCCCc-EEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeE
Q 012060 326 DSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPW-VYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSL 402 (472)
Q Consensus 326 ~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W-~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~ 402 (472)
..++.++++-.+..+|+.+..++.+...|+...+ ... +.+... ...+ ...+.--+..+|++. .+.|
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~~~~i~~~----~~~~------~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLTVTSIGAA----PFLH------DGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCEEEEEECC----SSCC------CEEECTTSCEEEEEEGGGTEE
T ss_pred CceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cceeEEeccC----cCcc------CceECCCCCEEEEEecCCCeE
Confidence 1122233445566777666555554433333221 111 122210 0111 122211233477664 4789
Q ss_pred EEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeee-ccceeEEeecCC
Q 012060 403 EVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRE-DVEGIEVWESSN 464 (472)
Q Consensus 403 ~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~-~~~~~~vw~~~~ 464 (472)
.||+.-.- ++...--+++.++..+|.. -+.-.|.++|+|=+ ..+.|-||++.+
T Consensus 349 ~v~D~~tg--------~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 349 AVIDSKDR--------RLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEETTTT--------EEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEECCCC--------eEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCCceEEEEEeCC
Confidence 99876421 2223323455556555532 12334567888854 567899999876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.068 Score=51.06 Aligned_cols=232 Identities=10% Similarity=0.017 Sum_probs=119.5
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCccc-
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQI- 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~- 254 (472)
.+.+|+... .+ +.+..||+.+.+......... ...+ ++.. ++ +||+.... .+.|.+||+.+.++
T Consensus 9 ~~~~~v~~~--~~-----~~v~~~d~~~~~~~~~~~~~~--~~~~-~~~s~dg~~l~~~~~~---~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 9 SNFGIVVEQ--HL-----RRISFFSTDTLEILNQITLGY--DFVD-TAITSDCSNVVVTSDF---CQTLVQIETQLEPPK 75 (331)
T ss_dssp CCEEEEEEG--GG-----TEEEEEETTTCCEEEEEECCC--CEEE-EEECSSSCEEEEEEST---TCEEEEEECSSSSCE
T ss_pred CCEEEEEec--CC-----CeEEEEeCcccceeeeEEccC--Ccce-EEEcCCCCEEEEEeCC---CCeEEEEECCCCcee
Confidence 567788876 22 367788888877654433221 1222 5543 34 59984322 24889999998553
Q ss_pred ccccccccCCCcccccccc-eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 255 SSEIGRQSGASSKNMAVGK-LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~-~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
...+... ..+.. ..+.+-+..||+. ..++ ....|..||+.+++++-+.... ..+ .+++.
T Consensus 76 ~~~~~~~-------~~~~~~~~~s~dg~~l~~~-~~~~---~~~~i~v~d~~~~~~~~~~~~~---~~~------~~~~~ 135 (331)
T 3u4y_A 76 VVAIQEG-------QSSMADVDITPDDQFAVTV-TGLN---HPFNMQSYSFLKNKFISTIPIP---YDA------VGIAI 135 (331)
T ss_dssp EEEEEEC-------SSCCCCEEECTTSSEEEEC-CCSS---SSCEEEEEETTTTEEEEEEECC---TTE------EEEEE
T ss_pred EEecccC-------CCCccceEECCCCCEEEEe-cCCC---CcccEEEEECCCCCeEEEEECC---CCc------cceEE
Confidence 2222110 11222 3444555667732 2111 1238999999999966654433 111 23334
Q ss_pred eecCCeEEEEcccCCC-cccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CC-EEEEec--CCeEEEeecc
Q 012060 334 DVDELTLFKICSKSGD-IAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KN-QVFVGR--GGSLEVWSRV 408 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~-~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g-~l~~~~--g~~~~v~~~~ 408 (472)
.-.+..||+.+..++. ...-|+.. ...-..... ..+.... .-..++.. +| +||++. ++.|.+|+-.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~--~g~~~~~~~--~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDA--DGVLFDTGQ--EFISGGT-----RPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECT--TCCEEEEEE--EEECSSS-----SEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEEecCCCceEEEEEECC--CCcEeecCC--ccccCCC-----CccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 5656679988765544 33223321 111111100 0010111 11233332 34 588875 4789999853
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.. .+...+ +. .+ .++.+..+++ -|.+||++......|-||+..
T Consensus 207 ~~----~~~~~~-~~-----~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 207 NP----ENITLL-NA-----VG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp ST----TSCEEE-EE-----EE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CC----ccccee-ee-----cc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 21 110001 11 11 1234555555 488899998888889999854
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.32 Score=50.29 Aligned_cols=286 Identities=11% Similarity=0.055 Sum_probs=128.3
Q ss_pred ccceeeccCCcEEEeeeCceEEeecccC----CCCC-ccccccc-cceeeee---CCeEEEEcCcCCCCceecceeeeec
Q 012060 132 STFTASSDDGSLWIAHGGQISVYDWNLS----HSVT-VRTHLDN-ITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 132 ~a~r~~~~~g~l~va~GG~Ve~YDW~~~----~m~~-~R~~~~~-v~~v~~l---~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
.++...|....+.++.++.|..||.... .... ...+-.. +.++++. ++.+.+.|+ .+| ++..||
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~--~dg-----~v~vw~ 94 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD--ESG-----KVIVWG 94 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE--TTS-----EEEEEE
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec--CCC-----EEEEEe
Confidence 3455555533344333455878774321 1111 1122233 4455543 567788887 455 233444
Q ss_pred CCCC------ccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccce
Q 012060 203 VASA------HWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKL 274 (472)
Q Consensus 203 p~t~------~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~ 274 (472)
..+. .......+......+.+++... +. |++++.+......|-.||... ++..+... .......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~~~~~~~------~~~v~~~ 166 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SLGEVSGH------SQRINAC 166 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EEEECCSC------SSCEEEE
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC--cceeeecC------CccEEEE
Confidence 4322 1111111111122222355443 33 444655433345677777332 22221110 0011223
Q ss_pred eEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccc
Q 012060 275 TWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMAD 354 (472)
Q Consensus 275 ~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~d 354 (472)
.+.+-+..++++|+. .+.|..||.++.+.+.+..... ..+..+..++....++.++++|+.++....-|
T Consensus 167 ~~~~~~~~~l~~~~~------d~~v~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGD------DGSVVFYQGPPFKFSASDRTHH-----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EECSSSSCEEEEEET------TTEEEEEETTTBEEEEEECSSS-----CTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EECCCCCcEEEEEeC------CCcEEEEeCCCcceeeeecccC-----CCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 333434436666663 3579999999999777766441 10002222233443277788888887654333
Q ss_pred ccccCCCCcEEeecCCCC-cccCCCCCCCcCeEEEEECCEEEEecC--CeEEEeeccccccccccCCcceeecccccccc
Q 012060 355 LRNLGEDPWVYMEDKNPS-MISSSGNNNGENKLIHCYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVED 431 (472)
Q Consensus 355 l~s~e~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~ 431 (472)
+++ ...+...... ..... .-..++..+++.+++++ +.|.+|+-... +..+. +-... .
T Consensus 236 ~~~-----~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------~~~~~-~~~~~-~ 295 (615)
T 1pgu_A 236 GKS-----GEFLKYIEDDQEPVQG-----GIFALSWLDSQKFATVGADATIRVWDVTTS--------KCVQK-WTLDK-Q 295 (615)
T ss_dssp TTT-----CCEEEECCBTTBCCCS-----CEEEEEESSSSEEEEEETTSEEEEEETTTT--------EEEEE-EECCT-T
T ss_pred CCC-----CCEeEEecccccccCC-----ceEEEEEcCCCEEEEEcCCCcEEEEECCCC--------cEEEE-EcCCC-C
Confidence 332 2233321000 00111 11122222666666544 78999986422 11111 11110 1
Q ss_pred CCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 432 SGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 432 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.....|..+.+-.++++++=.....|-+|+..
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 12234666665334444444555678888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.18 Score=54.61 Aligned_cols=143 Identities=10% Similarity=0.026 Sum_probs=73.1
Q ss_pred CceEEeeccc-CCCCCc-cccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEE
Q 012060 149 GQISVYDWNL-SHSVTV-RTHLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAI 224 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~-R~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~av 224 (472)
|.|..|||.. ...... ..+-+.+.++++. ++.++++|+ .+| ++..||..+.+-......... ..+.++
T Consensus 119 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg-----~v~vwd~~~~~~~~~~~~~~~-~~v~~~ 190 (814)
T 3mkq_A 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDR-----TVKVWSLGQSTPNFTLTTGQE-RGVNYV 190 (814)
T ss_dssp SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTS-----EEEEEETTCSSCSEEEECCCT-TCCCEE
T ss_pred CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCcceeEEecCCC-CCEEEE
Confidence 4588888644 121111 1122333345544 456777777 454 455666544332111111111 112224
Q ss_pred EEe---CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 225 ADS---PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 225 a~l---~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+.. ++.+++ |+.+ ..|-.||..+.+++..+... ........+.+ ++.++++|+.+ +.|.
T Consensus 191 ~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~~-~~~~l~~~~~d------g~v~ 253 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDD----LTIKIWDYQTKSCVATLEGH------MSNVSFAVFHP-TLPIIISGSED------GTLK 253 (814)
T ss_dssp EECCSTTCCEEEEECTT----SEEEEEETTTTEEEEEEECC------SSCEEEEEECS-SSSEEEEEETT------SCEE
T ss_pred EEEECCCCCEEEEEeCC----CEEEEEECCCCcEEEEEcCC------CCCEEEEEEcC-CCCEEEEEeCC------CeEE
Confidence 443 455444 6544 37889999886544433210 00112233333 45566666633 4699
Q ss_pred EEcCCCCeeeeEEcCC
Q 012060 301 MWDPRSGEVVWETNEP 316 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~ 316 (472)
.||+.+++.+++...+
T Consensus 254 vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 254 IWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEETTTCSEEEEECCS
T ss_pred EEECCCCcEEEEeecC
Confidence 9999999988887755
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.19 Score=48.00 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=108.2
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|. +.++++.+ |.|..||... ........+-..+.++++ -++.+.+.|+ .++ ++..||..+.+-
T Consensus 18 ~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~-----~i~vwd~~~~~~ 89 (304)
T 2ynn_A 18 GIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS--DDF-----RIRVFNYNTGEK 89 (304)
T ss_dssp EEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE--TTS-----EEEEEETTTCCE
T ss_pred EEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC--CCC-----EEEEEECCCCcE
Confidence 3444455 44443443 3477777433 211111222222223333 3566777777 444 455666655431
Q ss_pred ccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccc-cccccccCCCcccccccceeEEecCCeEEE
Q 012060 209 TDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQIS-SEIGRQSGASSKNMAVGKLTWIPATGVVLG 285 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~-~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv 285 (472)
+..+......+.+++... +.+.+ |+.+ .+|-.||..+.... ..+. -+.-..+.+.+.+.++.+++
T Consensus 90 --~~~~~~h~~~v~~~~~~~~~~~l~sgs~D----~~v~lWd~~~~~~~~~~~~------~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 90 --VVDFEAHPDYIRSIAVHPTKPYVLSGSDD----LTVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp --EEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEEGGGTTEEEEEEC------CCCSCEEEEEECTTCTTEEE
T ss_pred --EEEEeCCCCcEEEEEEcCCCCEEEEECCC----CeEEEEECCCCcchhhhhc------ccCCcEEEEEECCCCCCEEE
Confidence 111221222233355543 34555 6554 47889998773211 1000 00111123344445677788
Q ss_pred EEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee-cCCeEEEEcccCCCcccccccccCCCCcE
Q 012060 286 SAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV-DELTLFKICSKSGDIAMADLRNLGEDPWV 364 (472)
Q Consensus 286 ~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~-~~~~iy~vGg~~g~~~~~dl~s~e~d~W~ 364 (472)
+|+.+ ++|..||.++.+...+..... . .++..++... -++.+.+.|+.++....-|+++ ..
T Consensus 158 sgs~D------~~v~iwd~~~~~~~~~~~~~~----~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-----~~ 219 (304)
T 2ynn_A 158 SGCLD------RTVKVWSLGQSTPNFTLTTGQ----E---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-----KS 219 (304)
T ss_dssp EEETT------SEEEEEETTCSSCSEEEECCC----T---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTT-----TE
T ss_pred EEeCC------CeEEEEECCCCCccceeccCC----c---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC-----Cc
Confidence 87743 479999998887555544321 1 1110111111 2566778888887654334432 23
Q ss_pred EeecCCCCcccCCCCCCCcCeE-EEEE-CCEEEEecC--CeEEEeecc
Q 012060 365 YMEDKNPSMISSSGNNNGENKL-IHCY-KNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 365 ~~~~~~~~m~~~~~~~~~~~~~-~~~~-~g~l~~~~g--~~~~v~~~~ 408 (472)
++.. +..... ... ++.. +++++++++ +.|.+|+-.
T Consensus 220 ~~~~----~~~h~~-----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 220 CVAT----LEGHMS-----NVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEE----EECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred ccee----eCCCCC-----CEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 3332 222221 222 2222 345555543 889999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.73 Score=43.52 Aligned_cols=228 Identities=13% Similarity=0.149 Sum_probs=108.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++...+.|+ .+| .+..||..+.+.... +......+.+++.. ++.+.+ |+.+ ..|..||..+.+++
T Consensus 34 ~~~~l~s~~--~dg-----~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 34 NGEWLASSS--ADK-----LIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDD----KTLKIWDVSSGKCL 100 (312)
T ss_dssp TSSEEEEEE--TTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCCEE
T ss_pred CCCEEEEee--CCC-----eEEEEeCCCcccchh--hccCCCceEEEEEcCCCCEEEEECCC----CEEEEEECCCCcEE
Confidence 445566666 444 234455444433221 11112223335544 344444 6544 47889999985543
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.... -......+.+ ++.++++|+.+ +.|..||.++++.+.+.... ...+..++...
T Consensus 101 ~~~~~~~------~~v~~~~~~~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~ 159 (312)
T 4ery_A 101 KTLKGHS------NYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAH--------SDPVSAVHFNR 159 (312)
T ss_dssp EEEECCS------SCEEEEEECS-SSSEEEEEETT------SCEEEEETTTCCEEEEECCC--------SSCEEEEEECT
T ss_pred EEEcCCC------CCEEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCEEEEEecCC--------CCcEEEEEEcC
Confidence 3332100 0011122223 45566666643 46999999999877666544 11222222233
Q ss_pred cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE-EEE-ECCEEEEe--cCCeEEEeeccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL-IHC-YKNQVFVG--RGGSLEVWSRVREG 411 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~-~~~-~~g~l~~~--~g~~~~v~~~~~~~ 411 (472)
++.+++.|+.++....-|+++- ..+.. +..... .... ++. -+++.+++ ..+.|.+|+-...
T Consensus 160 -~~~~l~~~~~d~~i~~wd~~~~-----~~~~~----~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~- 224 (312)
T 4ery_A 160 -DGSLIVSSSYDGLCRIWDTASG-----QCLKT----LIDDDN----PPVSFVKFSPNGKYILAATLDNTLKLWDYSKG- 224 (312)
T ss_dssp -TSSEEEEEETTSCEEEEETTTC-----CEEEE----ECCSSC----CCEEEEEECTTSSEEEEEETTTEEEEEETTTT-
T ss_pred -CCCEEEEEeCCCcEEEEECCCC-----ceeeE----EeccCC----CceEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 6778889998887554344431 12211 111110 0111 222 13343333 3488999975321
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+. .+.+.++... .......+..-+++++++=.+...|-||+..
T Consensus 225 -------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 225 -------KC-LKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp -------EE-EEEECSSCCS-SSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred -------cE-EEEEEecCCc-eEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 11 2222222111 1112234444556666666666778888854
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.089 Score=50.44 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=92.5
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.++.||+++|..|. ++|..+|+.+++++=+.. +...-++.++ +..+++||++..+++....-|..+.
T Consensus 29 ~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~----l~~~~fgeGi-----~~~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 29 LRGHLYESTGETGR----SSVRKVDLETGRILQRAE----VPPPYFGAGI-----VAWRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp ETTEEEEEECCTTS----CEEEEEETTTCCEEEEEE----CCTTCCEEEE-----EEETTEEEEEESSSSEEEEEETTTT
T ss_pred ECCEEEEECCCCCC----ceEEEEECCCCCEEEEEe----CCCCcceeEE-----EEeCCEEEEEEeeCCEEEEEECCcC
Confidence 46899999886664 489999999999554332 2345578885 7789999999877776554455444
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+ .++. .+.+. .+-+++.-+++||++-| +.|.++++.-. ++.|+==|+... ..-..+
T Consensus 96 ~-----~~~t----i~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~--------~~~~~I~V~~~g-~~~~~l 152 (243)
T 3mbr_X 96 T-----PRAR----FRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTL--------QQVGSIKVTAGG-RPLDNL 152 (243)
T ss_dssp E-----EEEE----EECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTC--------CEEEEEECEETT-EECCCE
T ss_pred c-----EEEE----EeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCC--------eEEEEEEEccCC-cccccc
Confidence 3 3332 22222 26788777788999955 77877776422 222332222200 011245
Q ss_pred EEEeecCceEEEeeeccceeEEee
Q 012060 438 SRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
..++.-+.|||+.=.+.+.|-|=+
T Consensus 153 NeLe~~~G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 153 NELEWVNGELLANVWLTSRIARID 176 (243)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEC
T ss_pred eeeEEeCCEEEEEECCCCeEEEEE
Confidence 566666779998876655555544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.05 Score=59.79 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=92.9
Q ss_pred CceEEeecc--c-CCCCCccccccccceeeee-C--CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccccee
Q 012060 149 GQISVYDWN--L-SHSVTVRTHLDNITSIRHV-W--SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVT 222 (472)
Q Consensus 149 G~Ve~YDW~--~-~~m~~~R~~~~~v~~v~~l-~--~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ 222 (472)
|.|..||.. . ......+.+-+.+.++++. + +...+.|+ .+| ++-.||..+.+|..+..+......+.
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--~Dg-----~I~vwd~~~~~~~~~~~~~~h~~~V~ 103 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVLIWKEENGRWSQIAVHAVHSASVN 103 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE--TTS-----CEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe--CCC-----eEEEEECCCCcccccccccCCCCCeE
Confidence 458888743 1 1111222233444455553 3 66777777 555 45667777777666554444444444
Q ss_pred EEEEeC---CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec------------CCeEEEE
Q 012060 223 AIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA------------TGVVLGS 286 (472)
Q Consensus 223 ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~------------~g~Lyv~ 286 (472)
+++... +.+++ |+.+ .+|-.||..+.+....+-.. . +......+.+.+. ++.++++
T Consensus 104 ~v~~sp~~~~~~l~sgs~d----g~I~vwdl~~~~~~~~~~~~--~--~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 104 SVQWAPHEYGPLLLVASSD----GKVSVVEFKENGTTSPIIID--A--HAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp EEEECCGGGCSEEEEEETT----SEEEEEECCSSSCCCCEEEE--C--CSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred EEEECCCCCCCEEEEEeCC----CcEEEEEeecCCCcceeEee--c--CCCceEEEEecCcccccccccccCCCCCEEEE
Confidence 455553 44555 6544 47889998874211110000 0 0001122223332 4566677
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC--CeEEEEcccCCCcccccccc
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE--LTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~--~~iy~vGg~~g~~~~~dl~s 357 (472)
|+.+ +.|..||.+++...+.......... ..+..++....+ +.+++.|+.++....-|+++
T Consensus 176 gs~d------g~I~iwd~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 176 GGAD------NLVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EETT------SCEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EECC------CeEEEEeccCCcccceeeeeecCCC----CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 6644 4699999998854454443311111 111122223322 78888999888755434443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.75 Score=46.03 Aligned_cols=234 Identities=12% Similarity=0.158 Sum_probs=113.2
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.+++.|+ .+| ++..||..+.+-... +......+.+++.. ++.+.| |+.+ .+|-.||..+.+.+
T Consensus 119 ~~~~l~s~s--~Dg-----~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D----~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 119 VFSVMVSAS--EDA-----TIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD----MTIKLWDFQGFECI 185 (410)
T ss_dssp SSSEEEEEE--SSS-----CEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT----SCCCEEETTSSCEE
T ss_pred CCCEEEEEe--CCC-----eEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCcee
Confidence 356677777 454 456677665543221 22122233335554 345666 6555 35778999885533
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.. +...-..+.+.+ ++..+++|+. .++|.+||.++++++-+..... ..+..++ -.
T Consensus 186 ~~~~~------h~~~V~~v~~~p-~~~~l~s~s~------D~~i~~wd~~~~~~~~~~~~h~--------~~v~~~~-~~ 243 (410)
T 1vyh_C 186 RTMHG------HDHNVSSVSIMP-NGDHIVSASR------DKTIKMWEVQTGYCVKTFTGHR--------EWVRMVR-PN 243 (410)
T ss_dssp ECCCC------CSSCEEEEEECS-SSSEEEEEET------TSEEEEEETTTCCEEEEEECCS--------SCEEEEE-EC
T ss_pred EEEcC------CCCCEEEEEEeC-CCCEEEEEeC------CCeEEEEECCCCcEEEEEeCCC--------ccEEEEE-EC
Confidence 33221 000112223333 4555566663 3579999999998766665431 1111111 22
Q ss_pred cCCeEEEEcccCCCcccccccccC-------CCCcE-Ee--ecCCCC--cccCCCCCCCcCeEEEEECCEEEEec--CCe
Q 012060 336 DELTLFKICSKSGDIAMADLRNLG-------EDPWV-YM--EDKNPS--MISSSGNNNGENKLIHCYKNQVFVGR--GGS 401 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e-------~d~W~-~~--~~~~~~--m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~ 401 (472)
-++.+++.|+.++....-|+++-+ ....+ .+ .|.... +.... + .........|.+++++ .+.
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-G---SETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-S---CC-------CCEEEEEETTSE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-c---ccccccCCCCCEEEEEeCCCe
Confidence 367888899988775544544322 11111 11 110000 00000 0 0111111224455554 378
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeec-CceEEEeeeccceeEEeecCC
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG-GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~~~~~~vw~~~~ 464 (472)
|.+|+--.. .. -+.+.++ .+.|+.+.+- .++++++=.+...|-||+...
T Consensus 320 i~iwd~~~~--------~~-~~~~~~h-----~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 320 IKMWDVSTG--------MC-LMTLVGH-----DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp EEEEETTTT--------EE-EEEEECC-----SSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred EEEEECCCC--------ce-EEEEECC-----CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 999975311 11 1223332 3468777764 234555666667899998643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.27 Score=48.86 Aligned_cols=237 Identities=13% Similarity=0.114 Sum_probs=116.6
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++..++.|+ .+| ++..||..+.+-... +......+.+++.. ++. |+.|+.+ .+|-.||..+.+..
T Consensus 134 dg~~l~s~~--~d~-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d----~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 134 DGKFLATGA--EDR-----LIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD----RTVRIWDLRTGQCS 200 (393)
T ss_dssp TSSEEEEEE--TTS-----CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEE
T ss_pred CCCEEEEEc--CCC-----eEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC----CcEEEEECCCCeeE
Confidence 567777887 454 455666665542221 11112222235544 333 4445444 47889999985532
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+.. .. ......+.+.++.++++|+.+ +.|..||.++++++-....+..... .....+..++...
T Consensus 201 ~~~~~---~~----~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~ 266 (393)
T 1erj_A 201 LTLSI---ED----GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGT-GHKDSVYSVVFTR 266 (393)
T ss_dssp EEEEC---SS----CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------C-CCSSCEEEEEECT
T ss_pred EEEEc---CC----CcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCC-CCCCCEEEEEECC
Confidence 22221 00 112233444578888888744 4699999999986655433210000 0011121222233
Q ss_pred cCCeEEEEcccCCCcccccccccCC-------CCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEe
Q 012060 336 DELTLFKICSKSGDIAMADLRNLGE-------DPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVW 405 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e~-------d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~ 405 (472)
++.+.+.|+.++....-|++..+. +...+... +..... .-..++. -+++.+++++ +.|.+|
T Consensus 267 -~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~----~~~h~~----~v~~~~~~~~~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 267 -DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----YIGHKD----FVLSVATTQNDEYILSGSKDRGVLFW 337 (393)
T ss_dssp -TSSEEEEEETTSEEEEEEC---------------CEEEE----EECCSS----CEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE----EecccC----cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 567778898888765545554320 00111110 111110 0111222 2345555543 789999
Q ss_pred eccccccccccCCcceeeccccccccCCCCceEEEeecC-------ceEEEeeeccceeEEeecCC
Q 012060 406 SRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-------NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 406 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-------~r~f~~~~~~~~~~vw~~~~ 464 (472)
+.-.. +.+ ..+-+ ..+.|..+++-- .++|++=.+-..|-||+...
T Consensus 338 d~~~~-------~~~--~~l~~-----h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 338 DKKSG-------NPL--LMLQG-----HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTTC-------CEE--EEEEC-----CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ECCCC-------eEE--EEECC-----CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 85311 111 11112 345688888753 46788888888999998643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.13 Score=56.57 Aligned_cols=236 Identities=13% Similarity=0.109 Sum_probs=116.1
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-C--CeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P--TTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~--g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++..++.|+ .+| ++..||....++..+..+...+..+.+++.. + +.+.+ |+.+ .+|-.||..+.+
T Consensus 20 dg~~latg~--~dg-----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D----g~I~vwd~~~~~ 88 (753)
T 3jro_A 20 YGKRLATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVLIWKEENGR 88 (753)
T ss_dssp SSCCEEEEE--TTT-----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT----SCEEEEEEETTE
T ss_pred CCCeEEEEE--CCC-----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC----CeEEEEECCCCc
Confidence 466677777 455 4556666655565554444344444446654 2 44444 6554 368889988843
Q ss_pred --cccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCeee--eEEcCCCCCCCCcccccc
Q 012060 254 --ISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEVV--WETNEPGSGRSARFGDSF 328 (472)
Q Consensus 254 --~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~v--W~~~~~~~~~~~R~~~~~ 328 (472)
++..+.. +......+.+.+.. +.++++|+. .+.|..||.+++... ...... ...+
T Consensus 89 ~~~~~~~~~------h~~~V~~v~~sp~~~~~~l~sgs~------dg~I~vwdl~~~~~~~~~~~~~~--------~~~v 148 (753)
T 3jro_A 89 WSQIAVHAV------HSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPIIIDAH--------AIGV 148 (753)
T ss_dssp EEEEEEECC------CSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCSSSCCCCEEEECC--------SSCE
T ss_pred ccccccccC------CCCCeEEEEECCCCCCCEEEEEeC------CCcEEEEEeecCCCcceeEeecC--------CCce
Confidence 1111100 00111223344431 666677663 347999999888411 111111 1111
Q ss_pred cceeeeec------------CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-C---C
Q 012060 329 ADVDVDVD------------ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-K---N 392 (472)
Q Consensus 329 ~d~~v~~~------------~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~---g 392 (472)
..++.... ++.++++|+.+|....-|+++- ..++..+.. +..... .=..++.. + +
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~----~~~h~~----~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLEST----LEGHSD----WVRDVAWSPTVLLR 219 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT-TTEEEEEEE----ECCCSS----CEEEEEECCCCSSS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC-cccceeeee----ecCCCC----cEEEEEeccCCCCC
Confidence 11111221 4677888988887654455432 333455443 222221 11122222 2 5
Q ss_pred EEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 393 QVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 393 ~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
.++++++ |.|.+|+-.... ......+ ... ....+.|+.+++ .|..|+..-. ...|-||+..
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~-----~~~--~~~~~~v~~l~~spdg~~l~s~s~-Dg~I~vwd~~ 284 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQ--GPWKKTL-----LKE--EKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 284 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSS--SCCBCCB-----SSS--SCCSSCCCCEEECTTTCCEEEECS-SSCEECCBCC
T ss_pred CEEEEEecCCEEEEecCCCCC--CcceeEE-----ecc--CCCCCceEEEEEcCCCCEEEEEcC-CCEEEEEecC
Confidence 6666654 789999864320 0000011 000 123456777766 4555555544 4569999865
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.37 Score=47.98 Aligned_cols=157 Identities=16% Similarity=0.205 Sum_probs=86.7
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.++++|+. .+.|..||.++++++++...+. . ...+..++... ++.+.++|+.++....-|+++
T Consensus 181 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~---h---~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-- 245 (437)
T 3gre_A 181 EKSLLVALTN------LSRVIIFDIRTLERLQIIENSP---R---HGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF-- 245 (437)
T ss_dssp SCEEEEEEET------TSEEEEEETTTCCEEEEEECCG---G---GCCEEEEEECT-TSCEEEEEETTSCEEEEETTT--
T ss_pred CCCEEEEEeC------CCeEEEEeCCCCeeeEEEccCC---C---CCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC--
Confidence 4667777763 3579999999999888887641 1 11221222222 677888999888755445443
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEE--------CCEEEEecC--CeEEEeeccccc-------cccccCCccee
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCY--------KNQVFVGRG--GSLEVWSRVREG-------RNRSCSEGLFR 422 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--------~g~l~~~~g--~~~~v~~~~~~~-------~~~~~~~~~~r 422 (472)
...+.. +... ....|.++ +++++++++ +.|.+|+-...+ ....+....|.
T Consensus 246 ---~~~~~~----~~~~------~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 246 ---NVLIRS----WSFG------DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp ---TEEEEE----EBCT------TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGS
T ss_pred ---ccEEEE----EecC------CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceec
Confidence 233332 1111 12233333 355666654 669999864220 00000000110
Q ss_pred e--ccccc---cccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 423 R--NFVDR---VEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 423 ~--~~~~~---~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
- ..+.. ..+...+.|+.+++-.++++++=.+...|-||+...
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred ccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 0 00000 001244578888888888999988889999999654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.02 E-value=0.29 Score=46.98 Aligned_cols=244 Identities=8% Similarity=-0.036 Sum_probs=115.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.++++|+ .+| .+..||..+.+|..+..+......+.+++.. ++.+++ |+.+ ..|-.||..+.+..
T Consensus 19 ~~~~l~~~~--~d~-----~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 19 DRTQIAICP--NNH-----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD----RNAYVWTLKGRTWK 87 (372)
T ss_dssp TSSEEEEEC--SSS-----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT----SCEEEEEEETTEEE
T ss_pred CCCEEEEEe--CCC-----EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC----CeEEEEECCCCeee
Confidence 567777887 444 5667777777665555444334444345555 344444 6544 36888998874311
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..+-.. -.......+.+. -++.++++|+.+ +.|..||.++++..+...... ... ...+.+++...
T Consensus 88 ~~~~~~----~~~~~v~~~~~~-~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~---~~~i~~~~~~~ 152 (372)
T 1k8k_C 88 PTLVIL----RINRAARCVRWA-PNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPI---RSTVLSLDWHP 152 (372)
T ss_dssp EEEECC----CCSSCEEEEEEC-TTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTC---CSCEEEEEECT
T ss_pred eeEEee----cCCCceeEEEEC-CCCCEEEEEeCC------CEEEEEEecCCCcceeeeeee-ccc---CCCeeEEEEcC
Confidence 111000 000011122233 355666666633 468899988875323222110 000 11121222233
Q ss_pred cCCeEEEEcccCCCcccccccccC------CCCcEEeecCCCC---cccCCCCCCCcCeEEEE-ECCEEEEe--cCCeEE
Q 012060 336 DELTLFKICSKSGDIAMADLRNLG------EDPWVYMEDKNPS---MISSSGNNNGENKLIHC-YKNQVFVG--RGGSLE 403 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~e------~d~W~~~~~~~~~---m~~~~~~~~~~~~~~~~-~~g~l~~~--~g~~~~ 403 (472)
++.++++|+.++....-|++.-+ ...|..-.+..+. +..... .-..++. -+++.+++ ..+.|.
T Consensus 153 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 153 -NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG----WVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp -TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS----CEEEEEECSSSSEEEEEETTTEEE
T ss_pred -CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC----eEEEEEECCCCCEEEEEeCCCEEE
Confidence 66778888888776554543211 1222210000000 111110 1112222 14444444 347899
Q ss_pred EeeccccccccccCCcceeeccccccccCCCCceEEEeec-CceEEEeeeccceeEEeecCCCCc
Q 012060 404 VWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG-GNRLFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 404 v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~~~~~~vw~~~~~~~ 467 (472)
+|+-... +..+. +- ...+.|..+++- .++++++- ....|-||+...+.|
T Consensus 228 i~d~~~~--------~~~~~-~~-----~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 228 LADADKK--------MAVAT-LA-----SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp EEEGGGT--------TEEEE-EE-----CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred EEECCCC--------ceeEE-Ec-----cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence 9986422 11111 11 124468877774 22444444 667889999766334
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.25 Score=48.13 Aligned_cols=149 Identities=9% Similarity=0.112 Sum_probs=81.1
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCC
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKS 250 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~ 250 (472)
+++...+..+++|+ .+| .+..||..+.+-. ..+......+.+++.. ++.+++ |+.+ ..|-.||..
T Consensus 211 ~~~~~~~~~~~~~~--~~g-----~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~ 277 (425)
T 1r5m_A 211 DVEWVDDDKFVIPG--PKG-----AIFVYQITEKTPT--GKLIGHHGPISVLEFNDTNKLLLSASDD----GTLRIWHGG 277 (425)
T ss_dssp CCEEEETTEEEEEC--GGG-----CEEEEETTCSSCS--EEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEECSS
T ss_pred EEEEcCCCEEEEEc--CCC-----eEEEEEcCCCcee--eeeccCCCceEEEEECCCCCEEEEEcCC----CEEEEEECC
Confidence 45556667777887 343 4566776654322 1111112222235544 344444 6544 368899998
Q ss_pred CcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 251 TLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
+.+++..+... ......+.+.+ ++ ++++++. .+.|.+||.++++++....... ..+..
T Consensus 278 ~~~~~~~~~~~------~~~i~~~~~~~-~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~--------~~i~~ 335 (425)
T 1r5m_A 278 NGNSQNCFYGH------SQSIVSASWVG-DD-KVISCSM------DGSVRLWSLKQNTLLALSIVDG--------VPIFA 335 (425)
T ss_dssp SBSCSEEECCC------SSCEEEEEEET-TT-EEEEEET------TSEEEEEETTTTEEEEEEECTT--------CCEEE
T ss_pred CCccceEecCC------CccEEEEEECC-CC-EEEEEeC------CCcEEEEECCCCcEeEecccCC--------ccEEE
Confidence 86544433210 01113334444 44 5556553 3579999999999887777541 12222
Q ss_pred eeeeecCCeEEEEcccCCCcccccccc
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++... ++.++++|+.++....-|++.
T Consensus 336 ~~~s~-~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 336 GRISQ-DGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEECHH
T ss_pred EEEcC-CCCEEEEEECCCeEEEEECCC
Confidence 22233 567788888887765545543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.97 Score=45.51 Aligned_cols=255 Identities=10% Similarity=-0.058 Sum_probs=118.5
Q ss_pred cceeeee-CCe-EEEEcCcCCCCceecceeeeecCCCCccccCCCCc--CcccceeEEEEe-CCe-EEEEecCCCCCcee
Q 012060 171 ITSIRHV-WSD-VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR--IYRATVTAIADS-PTT-VFSSLVCPHKENSV 244 (472)
Q Consensus 171 v~~v~~l-~~~-lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~--~~R~~~~ava~l-~g~-IYAGg~~~~~l~sV 244 (472)
+.++++- ++. |+++|+ .+| ++..||........+..+. .....+.+++.. ++. |++|..+ ..|
T Consensus 105 v~~~~~s~d~~~l~~~~~--~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~----g~v 173 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACAD--SDK-----SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF----GDV 173 (450)
T ss_dssp EEEEEECTTSSEEEEEEG--GGT-----EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT----SEE
T ss_pred eEEEEEcCCCCEEEEEEC--CCC-----eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC----CcE
Confidence 3344432 344 468887 444 4556666521222222221 101122235554 343 5546443 356
Q ss_pred EEEeCCCccccc-ccccccCCCcccccccceeEEec--CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 245 LLIDKSTLQISS-EIGRQSGASSKNMAVGKLTWIPA--TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 245 E~YDp~t~~~~~-~~~~~~~~~W~~v~~m~~~~~~~--~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
-.||..+.+... .+....+ +......+.+.+- .+.++++|+.+ +.|.+||.++++++-++....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h---- 240 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILG---HVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFGH---- 240 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEE---CSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCCC----
T ss_pred EEEecCCcccccccceeeec---ccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecCC----
Confidence 788877643221 0000000 0011123445553 16666777643 469999999998655544221
Q ss_pred CcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCC---CCccc----------CCC--CCCCcCeE
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKN---PSMIS----------SSG--NNNGENKL 386 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~---~~m~~----------~~~--~~~~~~~~ 386 (472)
...+..++.. ++.+++.|+.++.+..-|+++-+ -...-... .++.. ... .....-..
T Consensus 241 ---~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 241 ---KHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGK---NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp ---SSCEEEEEEC--STTEEEEEESSSEEEEEETTTCC---EEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ---CCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCc---EeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 1112222233 77778888888765544544322 11110000 00000 000 00001123
Q ss_pred EEEE--CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec-------cc
Q 012060 387 IHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED-------VE 455 (472)
Q Consensus 387 ~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~-------~~ 455 (472)
++.. +..|+++. .+.|.+|.-.+. +...+. .+...+ ..+.|.++++-.++++++-.. .+
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~------~~~~l~--~~~~~~--~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~ 382 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEK------QKGDLA--LKQIIT--FPYNVISLSAHNDEFQVTLDNKESSGVQKN 382 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSS------STTCEE--EEEEEE--CSSCEEEEEEETTEEEEEECCTTCCSSCCC
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccC------CCCcee--eccEec--cCCceEEEEecCCcEEEEEecccCCCCCCc
Confidence 3333 55677764 588999986111 110000 011111 126799999999999999765 34
Q ss_pred eeEEeecCCCCc
Q 012060 456 GIEVWESSNLSG 467 (472)
Q Consensus 456 ~~~vw~~~~~~~ 467 (472)
.|+||.-..-.|
T Consensus 383 ~i~v~~~~~~~~ 394 (450)
T 2vdu_B 383 FAKFIEYNLNEN 394 (450)
T ss_dssp SEEEEEEETTTT
T ss_pred ceEEEEEEcCCC
Confidence 578887544444
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.49 Score=46.94 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=66.8
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
+..+++.+ |.|..||... ........+-..+.++++. ++...+.|+ .++ ++-.||..+.+....-...
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~-----~v~iwd~~~~~~~~~~~~~- 206 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDR-----TVRIWDLRTGQCSLTLSIE- 206 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEEEEEECS-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec--CCC-----cEEEEECCCCeeEEEEEcC-
Confidence 44443333 3487877332 1111112222333344443 455666666 444 4566777665433221111
Q ss_pred cccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCC-CcccccccceeEEecCCeEEEEEEeCCC
Q 012060 217 YRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGA-SSKNMAVGKLTWIPATGVVLGSAIAWGA 292 (472)
Q Consensus 217 ~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~-~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~ 292 (472)
..+.+++.. ++.++| |+.+ .+|..||..+.+.+..+...... .-+.-....+.+. -++.++++|+.
T Consensus 207 --~~v~~~~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~--- 276 (393)
T 1erj_A 207 --DGVTTVAVSPGDGKYIAAGSLD----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSL--- 276 (393)
T ss_dssp --SCEEEEEECSTTCCEEEEEETT----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEET---
T ss_pred --CCcEEEEEECCCCCEEEEEcCC----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeC---
Confidence 122224443 566666 6554 46889999885544433221000 0000011122222 35666677764
Q ss_pred ccccceEEEEcCCCCe
Q 012060 293 FGYSGYVRMWDPRSGE 308 (472)
Q Consensus 293 ~~~~~sve~yDp~~~~ 308 (472)
.++|.+||.++..
T Consensus 277 ---d~~v~~wd~~~~~ 289 (393)
T 1erj_A 277 ---DRSVKLWNLQNAN 289 (393)
T ss_dssp ---TSEEEEEEC----
T ss_pred ---CCEEEEEECCCCC
Confidence 3479999988754
|
| >1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0033 Score=53.30 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCCCcEEEE-ECCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhccccCcc------cC
Q 012060 13 QNGDRVKLN-VGGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRSNRL------PS 80 (472)
Q Consensus 13 ~~~~~V~Ln-VGG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrtg~l------~~ 80 (472)
..+..|+|. -+|+.|.+.+.+... |..++.|+... +...++|-+ .+++.+++.|+.|++.-+- .+
T Consensus 14 ~~~~~v~L~SsDG~~F~V~~~~A~~---S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i 90 (112)
T 1vcb_B 14 PDAMYVKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 90 (112)
T ss_dssp ---CEEEEECTTSCEEEEEHHHHHT---SHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCCEEEEEcCCCCEEEECHHHHHH---hHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCC
Confidence 345678887 699999999997655 78999998742 223356644 8999999999999965321 11
Q ss_pred C---CCCcchHHHHhhhhhcCc
Q 012060 81 T---ASRFSKQELADEALYYGI 99 (472)
Q Consensus 81 ~---~~~~~v~~Ll~eA~~~ql 99 (472)
+ -+...+.+|+.+|+||+|
T Consensus 91 ~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 91 PEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHhCc
Confidence 1 122467788899999986
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=95.80 E-value=1.1 Score=46.23 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=87.4
Q ss_pred eEEeeccc-CCCCCccccccccceeeeeCC-e-EEEEcCcCCCCceecceeeeecCCCCccccCCCCcCccc---ceeEE
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHVWS-D-VAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRA---TVTAI 224 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~-~-lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~---~~~av 224 (472)
...+.|.. ......+.+-..+.++++..+ . +++.|+ .+| .+..||..+.+-.. .+..... .+.++
T Consensus 142 ~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~-----~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 142 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDG-----SVVFYQGPPFKFSA--SDRTHHKQGSFVRDV 212 (615)
T ss_dssp EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE--TTT-----EEEEEETTTBEEEE--EECSSSCTTCCEEEE
T ss_pred cEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEe--CCC-----cEEEEeCCCcceee--eecccCCCCceEEEE
Confidence 34445554 322222223233334444333 2 677776 444 45566655443222 2221122 23335
Q ss_pred EEeC--Ce-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 225 ADSP--TT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 225 a~l~--g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
+... +. |++|+.+ ..|-.||..+.+++..+.......-.. ...+.+. ++.++++++. .+.|..
T Consensus 213 ~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~--~~~~l~~~~~------d~~i~~ 278 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSD----RKISCFDGKSGEFLKYIEDDQEPVQGG--IFALSWL--DSQKFATVGA------DATIRV 278 (615)
T ss_dssp EECSTTCCEEEEEETT----CCEEEEETTTCCEEEECCBTTBCCCSC--EEEEEES--SSSEEEEEET------TSEEEE
T ss_pred EECCCCCCEEEEEeCC----CeEEEEECCCCCEeEEecccccccCCc--eEEEEEc--CCCEEEEEcC------CCcEEE
Confidence 5553 34 4446554 368899999877666551100000011 1223333 7777777763 357999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
||.++++.+.+...+....... -.+ +...++...++|+.++....-|++
T Consensus 279 wd~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 279 WDVTTSKCVQKWTLDKQQLGNQ-QVG-----VVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EETTTTEEEEEEECCTTCGGGC-EEE-----EEEEETTEEEEEETTSCEEEEETT
T ss_pred EECCCCcEEEEEcCCCCcccCc-eeE-----EEeCCCCeEEEEECCCCEEEEECC
Confidence 9999999777776551000011 111 122266677788888765443433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.80 E-value=1.2 Score=41.58 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=109.2
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCcccc-CCCCc--CcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD-PSDPR--IYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~-~a~m~--~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+++.|+ +| .+..||..+..... +..+. .....+.+++... +. |++|+.+ ..|..||..+.
T Consensus 62 ~~~~l~~~~---dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~ 129 (337)
T 1gxr_A 62 PTRHVYTGG---KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----STLSIWDLAAP 129 (337)
T ss_dssp SSSEEEEEC---BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS----SEEEEEECCCC
T ss_pred CCcEEEEcC---CC-----eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC----CcEEEEECCCC
Confidence 455666665 22 45667665543211 11100 1122232355543 34 4446543 47889999884
Q ss_pred cc--ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 253 QI--SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 253 ~~--~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
++ ...+.. +......+.+.+ ++.++++|+.+ +.|..||.++++++.+..... ..+.+
T Consensus 130 ~~~~~~~~~~------~~~~i~~~~~~~-~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~--------~~i~~ 188 (337)
T 1gxr_A 130 TPRIKAELTS------SAPACYALAISP-DSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHT--------DGASC 188 (337)
T ss_dssp --EEEEEEEC------SSSCEEEEEECT-TSSEEEEEETT------SCEEEEETTTTEEEEEECCCS--------SCEEE
T ss_pred Ccceeeeccc------CCCceEEEEECC-CCCEEEEEeCC------CcEEEEeCCCCceeeeeeccc--------CceEE
Confidence 41 111100 000011222333 55566666633 469999999999777765441 11212
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeec
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSR 407 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~ 407 (472)
++... ++.++++|+.++....-|+++- ..+.. ..... .-..++. -+++.++++ .+.|.+|+-
T Consensus 189 ~~~~~-~~~~l~~~~~dg~i~~~d~~~~-----~~~~~----~~~~~-----~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 189 IDISN-DGTKLWTGGLDNTVRSWDLREG-----RQLQQ----HDFTS-----QIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTT-----EEEEE----EECSS-----CEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECC-CCCEEEEEecCCcEEEEECCCC-----ceEee----ecCCC-----ceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 22233 6667778888876544344432 22221 11111 0112222 234444443 488999986
Q ss_pred cccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCC
Q 012060 408 VREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 408 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
... ...+ +. ...+.|+.+++- |.. +++-.+...|.||+...
T Consensus 254 ~~~--------~~~~--~~-----~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 254 NKP--------DKYQ--LH-----LHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TSS--------CEEE--EC-----CCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred CCC--------CeEE--Ec-----CCccceeEEEECCCCCE-EEEecCCCcEEEEECCC
Confidence 422 1111 11 234579888886 444 45555567899999654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.53 Score=44.41 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=110.8
Q ss_pred eeeeecCC--CCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeC---CCcccccccccccCCCcccc
Q 012060 197 LSSSRHVA--SAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDK---STLQISSEIGRQSGASSKNM 269 (472)
Q Consensus 197 sve~ydp~--t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp---~t~~~~~~~~~~~~~~W~~v 269 (472)
.+..|+.. +.++..+........-. +++.. ++ +||+++.. ...|..||. .+.+++..+.. . -
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~---~----~ 129 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYN---AGNVSVTRLEDGLPVGVVDVVEG---L----D 129 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETT---TTEEEEEEEETTEEEEEEEEECC---C----T
T ss_pred eEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecC---CCeEEEEECCCCccccccccccC---C----C
Confidence 45555544 55555443322111111 25544 33 48885432 246888988 43332222211 0 0
Q ss_pred cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC-Ceeee----EEcCCCCCCCCcccccccceeeeecCCeEEEEc
Q 012060 270 AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVW----ETNEPGSGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 270 ~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW----~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
.+....+.+-...||+++. ..+.|..||..+ +++.- ....+. ...++ +++....+..||+.+
T Consensus 130 ~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPAL------KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPR------HMVFHPNEQYAYCVN 196 (343)
T ss_dssp TBCCCEECTTSSEEEEEEG------GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEE------EEEECTTSSEEEEEE
T ss_pred CceEEEECCCCCEEEEecC------CCCEEEEEEecCCCceeeecccccccCC-CCCcc------eEEECCCCCEEEEEe
Confidence 1233445555567887653 135799999988 65211 111111 11222 233455566788887
Q ss_pred ccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEec--CCeEEEeeccccccccccCCcc
Q 012060 345 SKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGR--GGSLEVWSRVREGRNRSCSEGL 420 (472)
Q Consensus 345 g~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~ 420 (472)
..++.....|++. ++.++..+..... +...-.+ ...-..++.. +..||++. .+.|.+|+-... +...
T Consensus 197 ~~~~~i~~~~~~~-~~g~~~~~~~~~~-~~~~~~~-~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~------~~~~ 267 (343)
T 1ri6_A 197 ELNSSVDVWELKD-PHGNIECVQTLDM-MPENFSD-TRWAADIHITPDGRHLYACDRTASLITVFSVSED------GSVL 267 (343)
T ss_dssp TTTTEEEEEESSC-TTSCCEEEEEEEC-SCTTCCS-CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SCCE
T ss_pred CCCCEEEEEEecC-CCCcEEEEeeccc-cCccccc-cCCccceEECCCCCEEEEEecCCCEEEEEEEcCC------CCce
Confidence 6665544333321 1233433221000 1111000 0011234444 34788765 488999986421 0000
Q ss_pred eeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCCCc
Q 012060 421 FRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 421 ~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~~~ 467 (472)
+. +...+ .++.+..+++ -|.+||++-.+...|.||+-....|
T Consensus 268 -~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 268 -SK--EGFQP--TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp -EE--EEEEE--CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred -EE--eeeec--CCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence 00 11111 1223666666 4889999998889999996544444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.14 Score=49.71 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=91.2
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.++.||+++|..|. ++|..+|+++++++=+..- ...-|+.++ +..+++||++-.+++....-|..+.
T Consensus 51 ~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l----~~~~FgeGi-----t~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 51 RNGYFYESTGLNGR----SSIRKVDIESGKTLQQIEL----GKRYFGEGI-----SDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp ETTEEEEEEEETTE----EEEEEECTTTCCEEEEEEC----CTTCCEEEE-----EEETTEEEEEESSSSEEEEEETTTC
T ss_pred ECCEEEEECCCCCC----ceEEEEECCCCcEEEEEec----CCccceeEE-----EEeCCEEEEEEeeCCEEEEEECccC
Confidence 37899999987663 4899999999996655532 334577875 7789999999877766554455544
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+ .++. .....+ +-+++.-+++||++-| +.|.++++.-. ++.|+=-|+.... .-..+
T Consensus 118 ~-----~~~t----i~~~~e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~--------~v~~~I~V~~~g~-~~~~l 174 (262)
T 3nol_A 118 R-----QVRS----FNYDGE-----GWGLTHNDQYLIMSDGTPVLRFLDPESL--------TPVRTITVTAHGE-ELPEL 174 (262)
T ss_dssp C-----EEEE----EECSSC-----CCCEEECSSCEEECCSSSEEEEECTTTC--------SEEEEEECEETTE-ECCCE
T ss_pred c-----EEEE----EECCCC-----ceEEecCCCEEEEECCCCeEEEEcCCCC--------eEEEEEEeccCCc-ccccc
Confidence 4 2222 222222 5677766778999965 55777776422 2223322321000 01124
Q ss_pred EEEeecCceEEEeeeccceeEEee
Q 012060 438 SRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
-.++.-+.+||+.=...+.|-|-+
T Consensus 175 NELe~~~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 175 NELEWVDGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EEEEEETTEEEEEETTSSEEEEEC
T ss_pred ceeEEECCEEEEEEccCCeEEEEE
Confidence 445655679999887666665555
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.56 Score=44.52 Aligned_cols=239 Identities=9% Similarity=-0.000 Sum_probs=114.6
Q ss_pred CC-eEEEEcCcCCCCceecceeeeecCCCCcc-c-cCCCCcCcccceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCc
Q 012060 178 WS-DVAAVGSDYSSGIHFYDLSSSRHVASAHW-T-DPSDPRIYRATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~-~lYavGG~~~~g~~~l~sve~ydp~t~~W-~-~~a~m~~~R~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++ .+|+.+. .++ .+..+|+.+.+. . .+..-..++.. ++.. +.+||++... +....|..||+.+.
T Consensus 50 dg~~l~~~~~--~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~-~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 50 DCSNVVVTSD--FCQ-----TLVQIETQLEPPKVVAIQEGQSSMAD---VDITPDDQFAVTVTGL-NHPFNMQSYSFLKN 118 (331)
T ss_dssp SSCEEEEEES--TTC-----EEEEEECSSSSCEEEEEEECSSCCCC---EEECTTSSEEEECCCS-SSSCEEEEEETTTT
T ss_pred CCCEEEEEeC--CCC-----eEEEEECCCCceeEEecccCCCCccc---eEECCCCCEEEEecCC-CCcccEEEEECCCC
Confidence 44 4777765 222 567788876653 1 12222222221 3333 3358863111 11238999999996
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccce-EEEEcCCCCeeeeE----EcCCCCCCCCccccc
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGY-VRMWDPRSGEVVWE----TNEPGSGRSARFGDS 327 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~s-ve~yDp~~~~~vW~----~~~~~~~~~~R~~~~ 327 (472)
+++..+... ..+....+.+-+..||+++..+ +. |..||...+..+.. .... +..
T Consensus 119 ~~~~~~~~~-------~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~--------~~~ 177 (331)
T 3u4y_A 119 KFISTIPIP-------YDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISG--------GTR 177 (331)
T ss_dssp EEEEEEECC-------TTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECS--------SSS
T ss_pred CeEEEEECC-------CCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccC--------CCC
Confidence 654433220 1122333444455688876522 24 77787765543322 2222 111
Q ss_pred ccceeeeecCCeEEEEcccCCCcccccccccCCCCc-EEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeE
Q 012060 328 FADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPW-VYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSL 402 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W-~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~ 402 (472)
...++....+..||+.+..++.....|++ +.+. ..+.. +.... .-..++.. +..||++.. +.|
T Consensus 178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~---~~~~~~~~~~----~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i 245 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIGNSIGILETQ---NPENITLLNA----VGTNN-----LPGTIVVSRDGSTVYVLTESTVDV 245 (331)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECS---STTSCEEEEE----EECSS-----CCCCEEECTTSSEEEEECSSEEEE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECC---CCcccceeee----ccCCC-----CCceEEECCCCCEEEEEEcCCCEE
Confidence 12233455556699888766554433333 2222 11221 11111 11233333 345888754 668
Q ss_pred EEeeccccccccccCCcceeecc-ccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 403 EVWSRVREGRNRSCSEGLFRRNF-VDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 403 ~v~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
.+|+....+. ..+ +.+ -..+ ++.. ......-..|+--|.+||++-.+.+.|.||+.+.
T Consensus 246 ~~~d~~~~~~-~~~-~~~-~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 246 FNFNQLSGTL-SFV-KSF-GHGLLIDPR-PLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEETTTTEE-EEE-EEE-ECCCCCCCG-GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEEECCCCce-eee-ccc-ccccccCCC-CcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 8887532100 000 000 1110 0000 0001011256667889999999999999999654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.36 Score=47.03 Aligned_cols=254 Identities=11% Similarity=0.143 Sum_probs=119.9
Q ss_pred cceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEE
Q 012060 171 ITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLI 247 (472)
Q Consensus 171 v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~Y 247 (472)
+.++++ -++...+.|+ .++ ++..||..+..+..+..+......+.+++.. ++.++| |+.+ .+|-.|
T Consensus 64 v~~~~~sp~g~~l~s~s--~D~-----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D----~~v~iw 132 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASAS--FDA-----TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD----KSVWVW 132 (345)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEE
T ss_pred EEEEEECCCCCEEEEEE--CCC-----cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC----CeEEEE
Confidence 334443 2567777887 555 3344555554443333332222333345554 355555 6554 468889
Q ss_pred eCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~ 327 (472)
|..+.+....+....+ +......+.|.+ ++.++++|+.+ +.|.+||.++++ |.......... ..
T Consensus 133 d~~~~~~~~~~~~~~~---h~~~v~~~~~~p-~~~~l~s~s~d------~~i~~w~~~~~~--~~~~~~~~~h~----~~ 196 (345)
T 3fm0_A 133 EVDEEDEYECVSVLNS---HTQDVKHVVWHP-SQELLASASYD------DTVKLYREEEDD--WVCCATLEGHE----ST 196 (345)
T ss_dssp EECTTSCEEEEEEECC---CCSCEEEEEECS-SSSCEEEEETT------SCEEEEEEETTE--EEEEEEECCCS----SC
T ss_pred ECCCCCCeEEEEEecC---cCCCeEEEEECC-CCCEEEEEeCC------CcEEEEEecCCC--EEEEEEecCCC----Cc
Confidence 9876321100000000 000011223333 45566666643 469999999998 65433211111 11
Q ss_pred ccceeeeecCCeEEEEcccCCCcccccccccC----------CCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEE
Q 012060 328 FADVDVDVDELTLFKICSKSGDIAMADLRNLG----------EDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFV 396 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e----------~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~ 396 (472)
+.+++... ++.+++.|+.|+....=|++.-+ ...|.++.. +...... .-..++ .-.+..++
T Consensus 197 v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~---~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 197 VWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT----LSGFHSR---TIYDIAWCQLTGALA 268 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE----ECSSCSS---CEEEEEECTTTCCEE
T ss_pred eEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE----ecCCCCC---cEEEEEEecCCCEEE
Confidence 22222233 56778888888765432221111 234555443 1111100 001111 11233333
Q ss_pred e--cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC--ceEEEeeeccceeEEeecCC
Q 012060 397 G--RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG--NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 397 ~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg--~r~f~~~~~~~~~~vw~~~~ 464 (472)
+ ..+.|.+|....... .....+. +..+......+.|..+++-- .+++++=.+-..|-+|+...
T Consensus 269 s~~~d~~i~vw~~~~~~~---~~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 269 TACGDDAIRVFQEDPNSD---PQQPTFS--LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEETTSCEEEEEECTTSC---TTSCCEE--EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEeCCCeEEEEEeCCCCC---cceeeEE--EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 3 448899997642200 0111110 11111112345799999864 46999999999999998654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.57 E-value=1.3 Score=41.89 Aligned_cols=237 Identities=12% Similarity=0.138 Sum_probs=114.3
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC----Ce-EEEEecCCCCCceeEEEeCCCcc-
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP----TT-VFSSLVCPHKENSVLLIDKSTLQ- 253 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~----g~-IYAGg~~~~~l~sVE~YDp~t~~- 253 (472)
.+++.|+ .+. .-..+..||..+.+......... ...+.+++... +. |++|+.+ ..|-.||..+.+
T Consensus 32 ~l~~~~s--~~~--~d~~v~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~ 102 (357)
T 3i2n_A 32 KFVTMGN--FAR--GTGVIQLYEIQHGDLKLLREIEK-AKPIKCGTFGATSLQQRYLATGDFG----GNLHIWNLEAPEM 102 (357)
T ss_dssp EEEEEEC----C--CCEEEEEEEECSSSEEEEEEEEE-SSCEEEEECTTCCTTTCCEEEEETT----SCEEEECTTSCSS
T ss_pred eEEEecC--ccC--CCcEEEEEeCCCCcccceeeecc-cCcEEEEEEcCCCCCCceEEEecCC----CeEEEEeCCCCCc
Confidence 5666675 210 01245667766655433222111 12222355543 24 4446544 468899998854
Q ss_pred cccccccccCCCcccccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCCCe-eeeEEcCCCCCCCCccccc
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGE-VVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~-~vW~~~~~~~~~~~R~~~~ 327 (472)
++..+... -..+ ..+.+.+ -++.++++|+.+ +.|..||.++++ .+.+....- ....+.-.+
T Consensus 103 ~~~~~~~~----~~~v--~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~ 169 (357)
T 3i2n_A 103 PVYSVKGH----KEII--NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQ-GENKRDCWT 169 (357)
T ss_dssp CSEEECCC----SSCE--EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCT-TSCCCCEEE
T ss_pred cEEEEEec----ccce--EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccC-CCCCCceEE
Confidence 33322211 0111 1222221 355566666643 469999999986 455554431 111111121
Q ss_pred ccceee---eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE----CCEEEEec--
Q 012060 328 FADVDV---DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY----KNQVFVGR-- 398 (472)
Q Consensus 328 ~~d~~v---~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~----~g~l~~~~-- 398 (472)
+ +. -.-++.++++|+.++....-|+++-+. ..... ... .-..++.. ++..++++
T Consensus 170 ~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~------~~~-----~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 170 V---AFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWETN------IKN-----GVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp E---EEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEEE------CSS-----CEEEEEESCSSSSCCEEEEEES
T ss_pred E---EEEeccCCCCCEEEEEccCCeEEEEECccCce---eeecC------CCC-----ceEEEEcCCCCCCCCEEEEECC
Confidence 1 10 114677888888887655445443221 11111 111 11223332 34444433
Q ss_pred CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEEeecCC
Q 012060 399 GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 399 g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~~ 464 (472)
++.|.+|+-...+ ....+ .-. ......+.|..+++--+ .+|++-.+...|.||+...
T Consensus 233 dg~i~i~d~~~~~----~~~~~-~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 233 EGKFHVFDMRTQH----PTKGF-ASV----SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp TTEEEEEEEEEEE----TTTEE-EEE----EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCeEEEEeCcCCC----cccce-eee----ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 4889999864321 11111 100 00123557998888643 3888888888999999653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.56 E-value=1.5 Score=40.76 Aligned_cols=165 Identities=12% Similarity=0.177 Sum_probs=81.3
Q ss_pred eeEEec-CCeEEEEEEeCCCccccceEEEEcCCCC---------eeeeEEcCCCCCCCCcccccccceeeeecC-CeEEE
Q 012060 274 LTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSG---------EVVWETNEPGSGRSARFGDSFADVDVDVDE-LTLFK 342 (472)
Q Consensus 274 ~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~---------~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~-~~iy~ 342 (472)
+.+.+. ++.++++|+.+ +.|..||.+++ +.+.+.... ...+.+++..... +.+++
T Consensus 63 ~~~~~~~d~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYD------KTVKLWEEDPDQEECSGRRWNKLCTLNDS--------KGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEECCGGGCSEEEEEETT------SCEEEEEECTTSCTTSSCSEEEEEEECCC--------SSCEEEEEECCGGGCSEEE
T ss_pred EEEcCCCCCCEEEEEcCC------CeEEEEecCCCcccccccCcceeeeeccc--------CCceeEEEEcCCCCCcEEE
Confidence 334443 47777777744 46999999887 323333322 1222222233321 67788
Q ss_pred EcccCCCcccccccccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEEE-----CCEEEEecCCeEEEeecccccccccc
Q 012060 343 ICSKSGDIAMADLRNLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHCY-----KNQVFVGRGGSLEVWSRVREGRNRSC 416 (472)
Q Consensus 343 vGg~~g~~~~~dl~s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-----~g~l~~~~g~~~~v~~~~~~~~~~~~ 416 (472)
+|+.++.+..-|+++-+ ...|..-.... .+.....+....-..++.. +..|.+...+..-+|.....
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~------ 201 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMK-VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD------ 201 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEE-SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT------
T ss_pred EecCCCcEEEecCCChHHhcccccccccc-ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC------
Confidence 88888876655666544 33343221100 0111100000011222221 34444444433334433211
Q ss_pred CCcceeeccccccccCCCCceEEEeecCc-----eEEEeeeccceeEEeecCC
Q 012060 417 SEGLFRRNFVDRVEDSGRGAISRIDAGGN-----RLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 417 ~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-----r~f~~~~~~~~~~vw~~~~ 464 (472)
.+......+-+ ..+.|+.+++--+ +++++=.+...|.||+...
T Consensus 202 ~~~~~~~~~~~-----h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 202 GKLHVAAKLPG-----HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp SCEEEEEECCC-----CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CceeeeeecCC-----CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 11101121222 3457999988766 7888888888899998654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=95.54 E-value=1.2 Score=42.34 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=97.4
Q ss_pred EEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEE
Q 012060 223 AIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVR 300 (472)
Q Consensus 223 ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve 300 (472)
+++.. ++.+.| |+.+ .+|..||..+.+.+..+... -. +-....+. -++.++++|+. .+.|.
T Consensus 18 ~~~fsp~~~~l~s~~~d----g~v~lWd~~~~~~~~~~~~~----~~--~v~~~~~~-~~~~~l~s~s~------d~~i~ 80 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYS----GRVELWNYETQVEVRSIQVT----ET--PVRAGKFI-ARKNWIIVGSD------DFRIR 80 (304)
T ss_dssp EEEECSSSSEEEEEETT----SEEEEEETTTTEEEEEEECC----SS--CEEEEEEE-GGGTEEEEEET------TSEEE
T ss_pred EEEECCCCCEEEEEcCC----CcEEEEECCCCceeEEeecc----CC--cEEEEEEe-CCCCEEEEECC------CCEEE
Confidence 34444 344444 6544 47889999985533333220 00 01122233 34555566663 35799
Q ss_pred EEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 301 MWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 301 ~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
+||.++++.+.++... ...+-+++... ++.+++.|+.|+....=|++. .|..... +....
T Consensus 81 vwd~~~~~~~~~~~~h--------~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~----~~~~~~~----~~~h~--- 140 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAH--------PDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWEN----NWALEQT----FEGHE--- 140 (304)
T ss_dssp EEETTTCCEEEEEECC--------SSCEEEEEECS-SSSEEEEEETTSCEEEEEGGG----TTEEEEE----ECCCC---
T ss_pred EEECCCCcEEEEEeCC--------CCcEEEEEEcC-CCCEEEEECCCCeEEEEECCC----Ccchhhh----hcccC---
Confidence 9999999987777654 12222333333 566778899887754334332 2333221 11111
Q ss_pred CCcCe-EEEEE--CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee---cCceEEEeee
Q 012060 381 NGENK-LIHCY--KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA---GGNRLFVSRE 452 (472)
Q Consensus 381 ~~~~~-~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~---gg~r~f~~~~ 452 (472)
..+ .++.. +++++++++ +.|-+|+--.. +..+.- . ......|..+.+ +..+++++=.
T Consensus 141 --~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~-------~~~~~~--~----~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 141 --HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-------TPNFTL--T----TGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp --SCEEEEEECTTCTTEEEEEETTSEEEEEETTCS-------SCSEEE--E----CCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred --CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-------Ccccee--c----cCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 122 22222 456666654 88999985311 111111 0 011223444443 3445677777
Q ss_pred ccceeEEeecC
Q 012060 453 DVEGIEVWESS 463 (472)
Q Consensus 453 ~~~~~~vw~~~ 463 (472)
+...|-||+..
T Consensus 206 ~D~~i~iWd~~ 216 (304)
T 2ynn_A 206 DDLTIKIWDYQ 216 (304)
T ss_dssp TTSEEEEEETT
T ss_pred CCCeEEEEeCC
Confidence 77889999854
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.53 E-value=1.4 Score=42.60 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=65.7
Q ss_pred cceeeccCCcEEEeee---CceEEeeccc---CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYDWNL---SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YDW~~---~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
++...|. +.++ +.| |.|..||... ......+.+-+.+.++++. ++.+++.|+ .+| ++..||..+
T Consensus 16 ~~~~s~~-g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~d~-----~v~vwd~~~ 86 (377)
T 3dwl_C 16 EHAFNSQ-RTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS--QDR-----NAYVYEKRP 86 (377)
T ss_dssp CCEECSS-SSEE-ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE--TTS-----SEEEC----
T ss_pred EEEECCC-CCEE-EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe--CCC-----eEEEEEcCC
Confidence 3444444 4544 444 3477777321 1111222233334445543 456667776 454 456677666
Q ss_pred Cc-cccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEEeCCCccc---ccccccccCCCcccccccceeEEec
Q 012060 206 AH-WTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLIDKSTLQI---SSEIGRQSGASSKNMAVGKLTWIPA 279 (472)
Q Consensus 206 ~~-W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~YDp~t~~~---~~~~~~~~~~~W~~v~~m~~~~~~~ 279 (472)
.+ |.....+......+.+++.. ++. |++|+.+ ..|-.||..+.+. ...+.. . +......+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~---~--h~~~v~~~~~~~- 156 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA----RVISVCYFEQENDWWVSKHLKR---P--LRSTILSLDWHP- 156 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS----SCEEECCC-----CCCCEEECS---S--CCSCEEEEEECT-
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecC----CeEEEEEECCcccceeeeEeec---c--cCCCeEEEEEcC-
Confidence 65 54443333333333335544 344 4446544 3678888887431 111111 0 011112233333
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSG 307 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~ 307 (472)
++.++++|+.+ +.|..||.+++
T Consensus 157 ~~~~l~~~~~d------~~i~iwd~~~~ 178 (377)
T 3dwl_C 157 NNVLLAAGCAD------RKAYVLSAYVR 178 (377)
T ss_dssp TSSEEEEEESS------SCEEEEEECCS
T ss_pred CCCEEEEEeCC------CEEEEEEEEec
Confidence 56666777644 46899998644
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.79 Score=44.22 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=75.4
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec-CCeEEEEcccCCCccccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD-ELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~-~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
++.++++|+.+ ++|.+||.+++. |+.......... .+-.++.... ++.+.+.|+.|+....-|++.-
T Consensus 164 ~~~~l~s~s~D------~~i~iW~~~~~~--~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 164 SEALLASSSYD------DTVRIWKDYDDD--WECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSSEEEEEETT------SCEEEEEEETTE--EEEEEEECCCSS----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCEEEEEcCC------CeEEEEECCCCC--eeEEEEccCCCC----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 56667777744 469999999886 554433111111 1111112222 1456778888876554344432
Q ss_pred C---CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCC
Q 012060 359 G---EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433 (472)
Q Consensus 359 e---~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 433 (472)
+ ..+|.+... +...-.+ .=..++...+.+++++ ++.|.+|....- ..+.+...+.++ .
T Consensus 232 ~~~~~~~~~~~~~----~~~~h~~---~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~h----~ 294 (330)
T 2hes_X 232 DEDDQQEWVCEAI----LPDVHKR---QVYNVAWGFNGLIASVGADGVLAVYEEVDG------EWKVFAKRALCH----G 294 (330)
T ss_dssp CTTSCEEEEEEEE----CCSCCSS---CEEEEEECTTSCEEEEETTSCEEEEEEETT------EEEEEEEESCTT----T
T ss_pred CccccceeEEeee----ccccccc---ceEEEEEcCCCEEEEEeCCCEEEEEEcCCC------ceEEEecccccc----c
Confidence 2 334666554 2111110 1112222233344443 378999985311 001111111111 1
Q ss_pred CCceEEEeec---CceEEEeeeccceeEEeecCC
Q 012060 434 RGAISRIDAG---GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 434 ~~~i~~~~~g---g~r~f~~~~~~~~~~vw~~~~ 464 (472)
...|..+++- +.+++++=.+-.-|-||+...
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2268887763 345666666667899998654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=1.7 Score=40.78 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=95.0
Q ss_pred CeEEEEecCCCCCceeEEEeCC--Ccc--cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 229 TTVFSSLVCPHKENSVLLIDKS--TLQ--ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 229 g~IYAGg~~~~~l~sVE~YDp~--t~~--~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
.+||++..+. ..|..||.. +.+ ++..+.. .. .+..+.+.+-+..||+++.. .+.|..||.
T Consensus 50 ~~l~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~ 113 (343)
T 1ri6_A 50 RYLYVGVRPE---FRVLAYRIAPDDGALTFAAESAL---PG----SLTHISTDHQGQFVFVGSYN------AGNVSVTRL 113 (343)
T ss_dssp SEEEEEETTT---TEEEEEEECTTTCCEEEEEEEEC---SS----CCSEEEECTTSSEEEEEETT------TTEEEEEEE
T ss_pred CEEEEeecCC---CeEEEEEecCCCCceeecccccc---CC----CCcEEEEcCCCCEEEEEecC------CCeEEEEEC
Confidence 3588854431 578888877 322 1111111 00 23334455555567776531 347999998
Q ss_pred C---CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEee--cCCCCcccCCCC
Q 012060 305 R---SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYME--DKNPSMISSSGN 379 (472)
Q Consensus 305 ~---~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~--~~~~~m~~~~~~ 379 (472)
. +.+.+-..... ....+++....+..||+.+..++.+..-|++. ..+...+. . ..... +
T Consensus 114 ~~~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~----~~~~~-~ 177 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL---------DGCHSANISPDNRTLWVPALKQDRICLFTVSD--DGHLVAQDPAE----VTTVE-G 177 (343)
T ss_dssp ETTEEEEEEEEECCC---------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT--TSCEEEEEEEE----EECST-T
T ss_pred CCCccccccccccCC---------CCceEEEECCCCCEEEEecCCCCEEEEEEecC--CCceeeecccc----cccCC-C
Confidence 4 33322222211 11223445665667887775555443323321 24444332 1 11111 1
Q ss_pred CCCcCe-EEEEE-CC-EEEEec--CCeEEEeeccccccccccCCcceeecccccccc--CCCCceEEEeec--CceEEEe
Q 012060 380 NNGENK-LIHCY-KN-QVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVED--SGRGAISRIDAG--GNRLFVS 450 (472)
Q Consensus 380 ~~~~~~-~~~~~-~g-~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~i~~~~~g--g~r~f~~ 450 (472)
..+ .++.. +| .||++. .+.|.+|.-... +..+.....+...+. .....+..+++- |.+||++
T Consensus 178 ---~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 178 ---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP------HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp ---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCT------TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ---CCcceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 122 23332 33 588774 478999986421 111100111111111 112345556665 7799999
Q ss_pred eeccceeEEeecCC
Q 012060 451 REDVEGIEVWESSN 464 (472)
Q Consensus 451 ~~~~~~~~vw~~~~ 464 (472)
-.....|.||+...
T Consensus 249 ~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 249 DRTASLITVFSVSE 262 (343)
T ss_dssp ETTTTEEEEEEECT
T ss_pred ecCCCEEEEEEEcC
Confidence 87788899999764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=95.42 E-value=1.2 Score=43.12 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCceEEEeec--CceEEEeeeccceeEEeecCC
Q 012060 434 RGAISRIDAG--GNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 434 ~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~ 464 (472)
.+.|..+++- |.. +++=.....|-||+...
T Consensus 291 ~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 291 SSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SSCEEEEEECSSSSE-EEEEETTSEEEEEETTT
T ss_pred CCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCC
Confidence 4578888885 544 45555566799998643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.36 E-value=1.2 Score=41.36 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=22.5
Q ss_pred CCceEEEeecC-ceEEEeeeccceeEEeecCCC
Q 012060 434 RGAISRIDAGG-NRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 434 ~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~~ 465 (472)
.+.|+.+++-- ++++++=.+...|-||+....
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 45799999852 246666666678999997643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.36 E-value=1.4 Score=42.10 Aligned_cols=236 Identities=13% Similarity=0.153 Sum_probs=111.9
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++...+.|+ .++ ++..||..+.+...+..+......+.+++... +.+.| |+.+ .+|-.||+.+.+
T Consensus 24 ~g~~lasgs--~D~-----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D----~~v~iWd~~~~~ 92 (316)
T 3bg1_A 24 YGTRLATCS--SDR-----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD----RKVIIWREENGT 92 (316)
T ss_dssp GGCEEEEEE--TTT-----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT----SCEEEECCSSSC
T ss_pred CCCEEEEEe--CCC-----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC----CEEEEEECCCCc
Confidence 567777777 454 44555554443222222222223333455532 45555 6554 468899998732
Q ss_pred --cccccccccCCCcccccccceeEEec-CCeEEEEEEeCCCccccceEEEEcCCCC-eeeeEEcCCCCCCCCccccccc
Q 012060 254 --ISSEIGRQSGASSKNMAVGKLTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSG-EVVWETNEPGSGRSARFGDSFA 329 (472)
Q Consensus 254 --~~~~~~~~~~~~W~~v~~m~~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~-~~vW~~~~~~~~~~~R~~~~~~ 329 (472)
++..+.. +..+...+.+.+. .+.++++|+.+ ++|..||.+++ . |........... ...+
T Consensus 93 ~~~~~~~~~------h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~--~~~~~~~~~h~~-~v~~-- 155 (316)
T 3bg1_A 93 WEKSHEHAG------HDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQ--WEVKKINNAHTI-GCNA-- 155 (316)
T ss_dssp CCEEEEECC------CSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSC--EEECCBTTSSSS-CBCC--
T ss_pred ceEEEEccC------CCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCC--cceeeeeccccC-Ccce--
Confidence 1111100 0011123344443 36777777644 46899998876 4 654322100000 0000
Q ss_pred ceeeee----------------cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEEE-C
Q 012060 330 DVDVDV----------------DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHCY-K 391 (472)
Q Consensus 330 d~~v~~----------------~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~-~ 391 (472)
++-.. ..+.+++.|+.|+....=|++. ..+|..+.. +..... .+ .++.. +
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~--~~~~~~~~~----l~~h~~-----~V~~v~~sp~ 223 (316)
T 3bg1_A 156 -VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE--DGQWKEEQK----LEAHSD-----WVRDVAWAPS 223 (316)
T ss_dssp -CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT--TSCEEEEEC----CBCCSS-----CEEEEECCCC
T ss_pred -EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC--CCccceeee----cccCCC-----ceEEEEecCC
Confidence 00011 0146788888887654323321 345766654 322221 11 12211 1
Q ss_pred ----CEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecC
Q 012060 392 ----NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 392 ----g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~ 463 (472)
+++++++ .+.|-+|+-.... .......++.. ..+.|..+++-- .+++++=.+...|-+|+..
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~-~~~~~~~~~~~---------~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDAS-SNTWSPKLLHK---------FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTT-CCCCBCCEEEE---------CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEcCCCeEEEEEccCcc-ccchhhhhhhc---------CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 2555554 4889999754210 00001111111 245788888752 2344555556678999865
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.35 E-value=1 Score=43.75 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=95.2
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEE-EecCCCCCceeEEEeCCCccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFS-SLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
.+++.|+ .+| ++..||..+.+.............+.+++... +.+++ ++.+ .+|-.||..+.+ +.
T Consensus 87 ~~l~s~~--~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~-~~ 154 (383)
T 3ei3_B 87 TTVAVGS--KGG-----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR----GATTLRDFSGSV-IQ 154 (383)
T ss_dssp TEEEEEE--BTS-----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT----TEEEEEETTSCE-EE
T ss_pred CEEEEEc--CCC-----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC----CEEEEEECCCCc-eE
Confidence 4677776 444 45667777666554433222233443466664 34444 6443 478899988732 11
Q ss_pred ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec
Q 012060 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD 336 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~ 336 (472)
.+... ... ......+.+.+ ++.++++|+. .+.|..||.+ ++.+.+.... ...+.+++....
T Consensus 155 ~~~~~--~~~-~~~v~~~~~~~-~~~~l~~~~~------d~~i~i~d~~-~~~~~~~~~h--------~~~v~~~~~~~~ 215 (383)
T 3ei3_B 155 VFAKT--DSW-DYWYCCVDVSV-SRQMLATGDS------TGRLLLLGLD-GHEIFKEKLH--------KAKVTHAEFNPR 215 (383)
T ss_dssp EEECC--CCS-SCCEEEEEEET-TTTEEEEEET------TSEEEEEETT-SCEEEEEECS--------SSCEEEEEECSS
T ss_pred EEecc--CCC-CCCeEEEEECC-CCCEEEEECC------CCCEEEEECC-CCEEEEeccC--------CCcEEEEEECCC
Confidence 11110 000 01112333444 4555666663 3579999994 5566766654 122323334443
Q ss_pred CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeecc
Q 012060 337 ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~ 408 (472)
+..+++.|+.++....-|+++.+. ....+.. ..... .-..++.. +++.+++++ +.|.+|+-.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~----~~~~~-----~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKD-KNSYIAE----MPHEK-----PVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCS-TTCEEEE----EECSS-----CEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCc-ccceEEE----ecCCC-----ceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 443888999888766556665331 1122221 10111 11222322 455555544 899999854
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=2 Score=40.53 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred cccccceeeeeC----CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCC
Q 012060 167 HLDNITSIRHVW----SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHK 240 (472)
Q Consensus 167 ~~~~v~~v~~l~----~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~ 240 (472)
+-+.+.++++-. +.+.+.|+ .+| .+..||..+........+......+.+++.. ++. |++|+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~--~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--- 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGS--WAN-----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD--- 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEE--TTS-----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---
T ss_pred CCCceEEEEEcCCCCCceEEEEEC--CCC-----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC---
Confidence 334455555543 36777777 455 3455665542222212222222333335554 344 4446544
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEE-ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..|-.||..+.+++...+. -.. ...+.|. .-++.++++|+. .+.|..||.++++++.+...+
T Consensus 108 -g~v~iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 108 -KTAKMWDLSSNQAIQIAQH-----DAP--VKTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp -SEEEEEETTTTEEEEEEEC-----SSC--EEEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSEEEECS
T ss_pred -CcEEEEEcCCCCceeeccc-----cCc--eEEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEEEEecC
Confidence 4788999998664433222 111 1233443 245666677663 347999999999977777755
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.22 E-value=1.1 Score=44.23 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=76.4
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc--ccceeeeecCCeEEEEcccCCCcccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS--FADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~--~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
+..+..+++|+. .++|..||.++++.+-...... . .+|. +..++....++.+++.|+.|+....=|+
T Consensus 167 ~~~~~~l~s~s~------D~~i~~wd~~~~~~~~~~~~~~--~---~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 167 PDQETRLITGSG------DQTCVLWDVTTGQRISIFGSEF--P---SGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp SSSSSCEEEECT------TSCEEEECTTTCCEEEEECCCS--S---SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEECC------CCcEEEEEcCCCcEEEEeeccc--C---CCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 333444555553 3479999999998665553321 0 1221 1111222347789999999987654455
Q ss_pred cccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccC
Q 012060 356 RNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS 432 (472)
Q Consensus 356 ~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (472)
+.... .-..+ ..... ... .++. -+++.+++++ +.|.+|+--... .-..+... ....+.
T Consensus 236 ~~~~~-~~~~~-------~~h~~---~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~~--~~~~~~ 296 (380)
T 3iz6_a 236 RITSR-AVRTY-------HGHEG---DIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----QLQVYNRE--PDRNDN 296 (380)
T ss_dssp TTTCC-CCEEE-------CCCSS---CCC-EEEECTTSSEEEEECSSSCEEEEETTTTE-----EEEEECCC--CSSSCC
T ss_pred CCCCc-ceEEE-------CCcCC---CeE-EEEEecCCCeEEEEcCCCeEEEEECCCCc-----EEEEeccc--cccccc
Confidence 43211 01111 11111 011 2222 2567777765 789999863210 00011110 001112
Q ss_pred CCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 433 GRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 433 ~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
..+.|+.++| .|..|+..-. ...|-||+..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~ 328 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTL 328 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECT-TSCEEEEETT
T ss_pred ccCceEEEEECCCCCEEEEEEC-CCCEEEEECC
Confidence 2334666555 5666666544 5678999853
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=2.7 Score=44.23 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=108.4
Q ss_pred EEEe--CCeEEEEecCCCCCceeEEEeCCCccccc--ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 224 IADS--PTTVFSSLVCPHKENSVLLIDKSTLQISS--EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 224 va~l--~g~IYAGg~~~~~l~sVE~YDp~t~~~~~--~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
++.. +..+|+.... ...|-.||..+.+.+. .|.. ..| +-...+.+-+..+|+++. ..++|
T Consensus 285 i~~s~~~~~~~vs~~~---~g~i~vvd~~~~~~l~~~~i~~---~~~----~~~~~~spdg~~l~va~~------~~~~v 348 (543)
T 1nir_A 285 IIASHEHPEFIVNVKE---TGKVLLVNYKDIDNLTVTSIGA---APF----LHDGGWDSSHRYFMTAAN------NSNKV 348 (543)
T ss_dssp EEECSSSSEEEEEETT---TTEEEEEECTTSSSCEEEEEEC---CSS----CCCEEECTTSCEEEEEEG------GGTEE
T ss_pred EEECCCCCEEEEEECC---CCeEEEEEecCCCcceeEEecc---CcC----ccCceECCCCCEEEEEec------CCCeE
Confidence 4444 3457774322 4578889988743111 1111 001 111223334455777643 24689
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccC--CCCcEEeecCCCCcccC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLG--EDPWVYMEDKNPSMISS 376 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~ 376 (472)
..||..+++++.+.... .+..+..+..+ +.-.++.+|+.+. .++.....|+.+.. ...|..+.. +...
T Consensus 349 ~v~D~~tg~l~~~i~~g-~~ph~g~g~~~----~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~----l~~~ 419 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVG-KTPHPGRGANF----VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE----LQGQ 419 (543)
T ss_dssp EEEETTTTEEEEEEECS-SSBCCTTCEEE----EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE----EECS
T ss_pred EEEECCCCeEEEeeccC-CCCCCCCCccc----CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE----EEcC
Confidence 99999999977665422 11122122222 1233588998875 33433322222211 122988876 4443
Q ss_pred CCCCCCcCeEEEEECCEEEEec--------CCeEEEeeccccccccccCCcceeeccccccc--cCCCCceEEEee--cC
Q 012060 377 SGNNNGENKLIHCYKNQVFVGR--------GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVE--DSGRGAISRIDA--GG 444 (472)
Q Consensus 377 ~~~~~~~~~~~~~~~g~l~~~~--------g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~i~~~~~--gg 444 (472)
..+ ....+.+--+.+||+.. .++|.||.--.. +..++.--++... ...+..+.+++| -|
T Consensus 420 g~~--~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 420 GGG--SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp CSC--CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-------TSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred CCC--ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC-------CCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 321 12233333356899975 469999987533 1122221121100 012457888888 59
Q ss_pred ceEEEeee----ccceeEEeecCC
Q 012060 445 NRLFVSRE----DVEGIEVWESSN 464 (472)
Q Consensus 445 ~r~f~~~~----~~~~~~vw~~~~ 464 (472)
+.|+++-. +.+-|-||+...
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTT
T ss_pred CEEEEEeecCCCCCCeEEEEECCC
Confidence 99999854 578899998654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.56 Score=45.34 Aligned_cols=147 Identities=11% Similarity=0.077 Sum_probs=88.9
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.||++.|..+ .++|..+|+.+++++=+..-+ ..-++.++ +..+++||+..-.++.....|..+
T Consensus 31 dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~----~~~fgeGi-----~~~g~~lyv~t~~~~~v~viD~~t-- 95 (266)
T 2iwa_A 31 NDTLFESTGLYG----RSSVRQVALQTGKVENIHKMD----DSYFGEGL-----TLLNEKLYQVVWLKNIGFIYDRRT-- 95 (266)
T ss_dssp TTEEEEEECSTT----TCEEEEEETTTCCEEEEEECC----TTCCEEEE-----EEETTEEEEEETTCSEEEEEETTT--
T ss_pred CCeEEEECCCCC----CCEEEEEECCCCCEEEEEecC----CCcceEEE-----EEeCCEEEEEEecCCEEEEEECCC--
Confidence 379999877433 358999999999977655422 23456675 667999999987776654434433
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCceE
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAIS 438 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~ 438 (472)
...++. ++.+ .+ .+.+++-=+++||++-| +.|.|+...- -++.|+=-|+..+..- ..+-
T Consensus 96 ---~~v~~~----i~~g-~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t--------~~v~~~I~Vg~~~~p~-~~~n 155 (266)
T 2iwa_A 96 ---LSNIKN----FTHQ-MK---DGWGLATDGKILYGSDGTSILYEIDPHT--------FKLIKKHNVKYNGHRV-IRLN 155 (266)
T ss_dssp ---TEEEEE----EECC-SS---SCCEEEECSSSEEEECSSSEEEEECTTT--------CCEEEEEECEETTEEC-CCEE
T ss_pred ---CcEEEE----EECC-CC---CeEEEEECCCEEEEECCCCeEEEEECCC--------CcEEEEEEECCCCccc-ccce
Confidence 334443 2222 11 35667766788999965 6677776632 2223443344311111 1244
Q ss_pred EEeecCceEEEeeeccceeEEee
Q 012060 439 RIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 439 ~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
.+++.+.+||++....+-|-|=+
T Consensus 156 ele~~dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 156 ELEYINGEVWANIWQTDCIARIS 178 (266)
T ss_dssp EEEEETTEEEEEETTSSEEEEEE
T ss_pred eEEEECCEEEEecCCCCeEEEEE
Confidence 55655669999987666555544
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.88 Score=44.18 Aligned_cols=245 Identities=13% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCC-cCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcc-
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDP-RIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQ- 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m-~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~- 253 (472)
++.+.|.|| .++ ++..||..+.+|.....+ ......+.+++.. ++.+.| |+.+ .+|-.||..+.+
T Consensus 27 ~g~~las~~--~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D----~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 27 AGTLLASCG--GDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD----ATTCIWKKNQDDF 95 (345)
T ss_dssp TSSCEEEEE--TTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT----SCEEEEEECCC-E
T ss_pred CCCEEEEEc--CCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC----CcEEEEEccCCCe
Confidence 566677777 454 345566655555422111 1112223335554 345555 6554 367788877632
Q ss_pred -cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 254 -ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 254 -~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
.+..+.. +.-+-..+.|.+ ++.++++|+.+ ++|..||.+++.. ++........ ...+..++
T Consensus 96 ~~~~~~~~------h~~~v~~v~~sp-~~~~l~s~s~D------~~v~iwd~~~~~~-~~~~~~~~~h----~~~v~~~~ 157 (345)
T 3fm0_A 96 ECVTTLEG------HENEVKSVAWAP-SGNLLATCSRD------KSVWVWEVDEEDE-YECVSVLNSH----TQDVKHVV 157 (345)
T ss_dssp EEEEEECC------CSSCEEEEEECT-TSSEEEEEETT------SCEEEEEECTTSC-EEEEEEECCC----CSCEEEEE
T ss_pred EEEEEccC------CCCCceEEEEeC-CCCEEEEEECC------CeEEEEECCCCCC-eEEEEEecCc----CCCeEEEE
Confidence 1111100 000112233433 56667777644 4699999887631 2111110000 11111111
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccc
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVR 409 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~ 409 (472)
... ++.+++.|+.++....-| .++++|.++.. +..... .=..++. -+|+.+++++ +.|.+|....
T Consensus 158 ~~p-~~~~l~s~s~d~~i~~w~---~~~~~~~~~~~----~~~h~~----~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 158 WHP-SQELLASASYDDTVKLYR---EEEDDWVCCAT----LEGHES----TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECS-SSSCEEEEETTSCEEEEE---EETTEEEEEEE----ECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCcEEEEE---ecCCCEEEEEE----ecCCCC----ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 222 567788898887654322 23566776654 222221 1112222 2466666644 7899997532
Q ss_pred cccccccCC-cc-eeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecC
Q 012060 410 EGRNRSCSE-GL-FRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 410 ~~~~~~~~~-~~-~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~ 463 (472)
......+.. .. .....+-.........|.++++-- +.++++=.....|.||+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 210100000 00 000001111111334687777632 2345555566778999643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=2.2 Score=39.68 Aligned_cols=231 Identities=6% Similarity=0.013 Sum_probs=111.4
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCc---CcccceeEEEE--eCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPR---IYRATVTAIAD--SPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~---~~R~~~~ava~--l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
++.+|+... .+ ..+..||+....-....... ..-....++++ -++.||++... ....|.+||+..
T Consensus 40 ~g~l~v~~~--~~-----~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~--~~~~i~~~d~~g- 109 (286)
T 1q7f_A 40 QNDIIVADT--NN-----HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQIQIYNQYG- 109 (286)
T ss_dssp TCCEEEEEG--GG-----TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEEEEECTTS-
T ss_pred CCCEEEEEC--CC-----CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC--CCCEEEEECCCC-
Confidence 578888764 22 24566776643322221100 00011123666 36789994321 134788999654
Q ss_pred ccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccccccee
Q 012060 253 QISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVD 332 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~ 332 (472)
+.+..++.. ....|..+.. .-+|.||++.. ..+.|.+||+... .+++...+.....++ + ++
T Consensus 110 ~~~~~~~~~-----~~~~~~~i~~-~~~g~l~v~~~------~~~~i~~~~~~g~-~~~~~~~~~~~~~p~---~---i~ 170 (286)
T 1q7f_A 110 QFVRKFGAT-----ILQHPRGVTV-DNKGRIIVVEC------KVMRVIIFDQNGN-VLHKFGCSKHLEFPN---G---VV 170 (286)
T ss_dssp CEEEEECTT-----TCSCEEEEEE-CTTSCEEEEET------TTTEEEEECTTSC-EEEEEECTTTCSSEE---E---EE
T ss_pred cEEEEecCc-----cCCCceEEEE-eCCCCEEEEEC------CCCEEEEEcCCCC-EEEEeCCCCccCCcE---E---EE
Confidence 222222210 0001111111 24678998753 2357999998644 455554321112221 2 22
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecC--C-eEEEeecc
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRG--G-SLEVWSRV 408 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g--~-~~~v~~~~ 408 (472)
+.. ++.||+....++.+...|. +...-..+.. ...-. .-.+|++- +|+||++.. + .|.+|+.-
T Consensus 171 ~~~-~g~l~v~~~~~~~i~~~~~---~g~~~~~~~~-----~g~~~----~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 171 VND-KQEIFISDNRAHCVKVFNY---EGQYLRQIGG-----EGITN----YPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp ECS-SSEEEEEEGGGTEEEEEET---TCCEEEEESC-----TTTSC----SEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred ECC-CCCEEEEECCCCEEEEEcC---CCCEEEEEcc-----CCccC----CCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 233 6789988765543332121 1111112221 00000 12345543 679999863 3 89999852
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecCC
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~ 464 (472)
. +..+ .+-.. .....+..+++.. .+|||+ ...+.|.||+...
T Consensus 238 g---------~~~~-~~~~~---~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 238 G---------QLIS-ALESK---VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp S---------CEEE-EEEES---SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred C---------CEEE-EEccc---CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 1 1112 12111 1233467777753 379999 5567899998643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.61 Score=44.81 Aligned_cols=255 Identities=9% Similarity=0.092 Sum_probs=117.8
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCC---c
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKST---L 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t---~ 252 (472)
++.||+++. ..+ -..+..||..+.++..+...........+++.. ++ +||++.+. -.+|..||... .
T Consensus 50 dg~l~~~~~--~~~---~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~---~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 50 KDCLYSVDK--EDD---EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH---KGTAEVMKIAADGAL 121 (347)
T ss_dssp TCEEEEEEE--ETT---EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT---TTEEEEEEECTTSCE
T ss_pred CCeEEEEEe--cCC---CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC---CCEEEEEEeCCCCCe
Confidence 677888764 111 134566666555554443311111111135544 33 58885332 34788898863 2
Q ss_pred cccccccccc-CC--CcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC-CCeeeeEEc----CCCCCCCCcc
Q 012060 253 QISSEIGRQS-GA--SSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR-SGEVVWETN----EPGSGRSARF 324 (472)
Q Consensus 253 ~~~~~~~~~~-~~--~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~-~~~~vW~~~----~~~~~~~~R~ 324 (472)
+++..+.... +. ......+....+. -+|.||+++. ..+.|..||.. +++ .... .+. ...++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~------~~~~v~~~~~~~~g~--~~~~~~~~~~~-g~~p~- 190 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDL------GSDKVYVYNVSDAGQ--LSEQSVLTMEA-GFGPR- 190 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEET------TTTEEEEEEECTTSC--EEEEEEEECCT-TCCEE-
T ss_pred eecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeC------CCCEEEEEEECCCCc--EEEeeeEEcCC-CCCCc-
Confidence 2222111100 00 0000001112233 3555887643 13479999998 555 2221 110 11222
Q ss_pred cccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CC-EEEEec--CC
Q 012060 325 GDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KN-QVFVGR--GG 400 (472)
Q Consensus 325 ~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g-~l~~~~--g~ 400 (472)
.++..-.+..||+.+..++.....|+.. +++++..+..... ....-.+. ..-..++.- +| .||++. .+
T Consensus 191 -----~~~~spdg~~l~v~~~~~~~v~v~~~~~-~~g~~~~~~~~~~-~~~~~~~~-~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 191 -----HLVFSPDGQYAFLAGELSSQIASLKYDT-QTGAFTQLGIVKT-IPADYTAH-NGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp -----EEEECTTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEES-SCTTCCSC-CEEEEEEECTTSCEEEEEEETTT
T ss_pred -----eEEECCCCCEEEEEeCCCCEEEEEEecC-CCCceEEeeeeee-cCCCCCCC-CcceeEEECCCCCEEEEEeCCCC
Confidence 2334565556998876555433222221 1334443332100 01100000 011223322 34 588864 47
Q ss_pred eEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCCCcceE
Q 012060 401 SLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNLSGVVC 470 (472)
Q Consensus 401 ~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~~~~~~ 470 (472)
.|.||.-... + . ++. +...+ ..+..+..+++. |.+||++-.+.+.|.||+-....|.+.
T Consensus 263 ~v~v~~~~~~----g---~-~~~--~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 263 TLAVFAVTAD----G---H-LTL--IQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECGG----G---C-EEE--EEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEEECCC----C---c-EEE--eEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8999985311 0 0 011 11111 123346666664 778999999989999997666666553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.58 Score=45.40 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=89.9
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
.++.||++.|..| .|..+|+++++++-+. -+ ..-|+.++ +..+++||++-.+++....-|..+.
T Consensus 63 ~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~----~~~FgeGi-----t~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 63 HQGHFFESTGHQG------TLRQLSLESAQPVWME-RL----GNIFAEGL-----ASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp ETTEEEEEETTTT------EEEECCSSCSSCSEEE-EC----TTCCEEEE-----EECSSCEEEEESSSCEEEEEETTTT
T ss_pred ECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CC----CCcceeEE-----EEeCCEEEEEEccCCEEEEEECCcC
Confidence 4789999887433 4999999999987776 22 24467775 7889999999877766554455444
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
+ .++. ..... .+-+++--+++||++-| +.|.++++.-. ++.|+=-|+...- .-..+
T Consensus 127 ~-----~~~t----i~~~~-----eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~--------~v~~~I~V~~~g~-~v~~l 183 (268)
T 3nok_A 127 Q-----RERT----TRYSG-----EGWGLCYWNGKLVRSDGGTMLTFHEPDGF--------ALVGAVQVKLRGQ-PVELI 183 (268)
T ss_dssp E-----EEEE----EECSS-----CCCCEEEETTEEEEECSSSEEEEECTTTC--------CEEEEEECEETTE-ECCCE
T ss_pred c-----EEEE----EeCCC-----ceeEEecCCCEEEEECCCCEEEEEcCCCC--------eEEEEEEeCCCCc-ccccc
Confidence 3 3332 22222 25678888899999964 77777776422 2223333322100 11134
Q ss_pred EEEeecCceEEEeeeccceeEEee
Q 012060 438 SRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
..++.-+.+||+.=...+-|-|=+
T Consensus 184 NeLe~~dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 184 NELECANGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EEEEEETTEEEEEETTCSEEEEEC
T ss_pred cccEEeCCEEEEEECCCCeEEEEe
Confidence 455555669999876666555444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.93 E-value=1.6 Score=41.13 Aligned_cols=121 Identities=10% Similarity=-0.057 Sum_probs=60.6
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
-++.+|+.++ .+ +++..+|+.+.+....-+......-. +++.. ++ .+|+.... ...|-+||+.+.++
T Consensus 9 ~~~~~~v~~~--~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~---~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 9 AGHEYMIVTN--YP-----NNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNH---YGDIYGIDLDTCKN 77 (349)
T ss_dssp TTCEEEEEEE--TT-----TEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETT---TTEEEEEETTTTEE
T ss_pred CCCEEEEEeC--CC-----CeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCC---CCcEEEEeCCCCcE
Confidence 4677888876 33 36778888776644322222100111 25544 34 58884322 35789999998664
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEe----CCCcc-ccceEEEEcCCCCe
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA----WGAFG-YSGYVRMWDPRSGE 308 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~----~g~~~-~~~sve~yDp~~~~ 308 (472)
+..+.......=....+....+.+-+..||++... ....+ ..+.|..||+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 43332200000000112334444445567775521 00000 12589999998854
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.59 Score=45.26 Aligned_cols=168 Identities=11% Similarity=0.055 Sum_probs=85.1
Q ss_pred CceEEeeccc-CCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEE
Q 012060 149 GQISVYDWNL-SHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 149 G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~ 226 (472)
|.|..||... ....+...+-+.+.++++. ++.+++.|+ .+| ++..||..+.+-. ..+......+.+++.
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~--~d~-----~v~~wd~~~~~~~--~~~~~h~~~v~~v~~ 234 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA--CDA-----SAKLWDVREGMCR--QTFTGHESDINAICF 234 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCSEE--EEECCCSSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe--CCC-----cEEEEECCCCeeE--EEEcCCcCCEEEEEE
Confidence 3477777332 2111112222333344433 566778887 454 4556666554321 111111222333555
Q ss_pred e-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 227 S-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 227 l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
. ++.++| |+.+ .+|-.||..+.+++..+... .- ......+.+. -++.++++|+.+ +.|..||.
T Consensus 235 ~p~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~~~---~~-~~~v~~~~~s-~~g~~l~~g~~d------~~i~vwd~ 299 (340)
T 1got_B 235 FPNGNAFATGSDD----ATCRLFDLRADQELMTYSHD---NI-ICGITSVSFS-KSGRLLLAGYDD------FNCNVWDA 299 (340)
T ss_dssp CTTSSEEEEEETT----SCEEEEETTTTEEEEEECCT---TC-CSCEEEEEEC-TTSSEEEEEETT------SEEEEEET
T ss_pred cCCCCEEEEEcCC----CcEEEEECCCCcEEEEEccC---Cc-ccceEEEEEC-CCCCEEEEECCC------CeEEEEEc
Confidence 4 455666 6554 46889999986644433221 00 0011222233 366777777643 47999999
Q ss_pred CCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 305 RSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 305 ~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
++.+.+-+.... ...+..++.. -++..++.|+.|+.
T Consensus 300 ~~~~~~~~~~~h--------~~~v~~~~~s-~dg~~l~s~s~D~~ 335 (340)
T 1got_B 300 LKADRAGVLAGH--------DNRVSCLGVT-DDGMAVATGSWDSF 335 (340)
T ss_dssp TTCCEEEEEECC--------SSCEEEEEEC-TTSSCEEEEETTSC
T ss_pred ccCcEeeEeecC--------CCcEEEEEEc-CCCCEEEEEcCCcc
Confidence 998866555543 1112122223 36677778888765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.91 E-value=2.6 Score=39.82 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=101.0
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEec---CCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPA---TGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~---~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
.+++++.+ ..|..||..+.+.+..+...... -.......+.|.+. ++.++++|+.+ +.|..||+++
T Consensus 36 ~~~~~~~~----~~v~vw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d------g~i~v~d~~~ 104 (366)
T 3k26_A 36 LVFATVGS----NRVTLYECHSQGEIRLLQSYVDA-DADENFYTCAWTYDSNTSHPLLAVAGSR------GIIRIINPIT 104 (366)
T ss_dssp EEEEEEET----TEEEEEEECGGGCEEEEEEEECS-CTTCCEEEEEEEECTTTCCEEEEEEETT------CEEEEECTTT
T ss_pred eEEEECCC----CEEEEEEcCCCcEEEeeeecccc-CCCCcEEEEEeccCCCCCCCEEEEecCC------CEEEEEEchh
Confidence 36664333 26889998885544333321100 00011233445542 15677777743 4799999999
Q ss_pred CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeE
Q 012060 307 GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKL 386 (472)
Q Consensus 307 ~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~ 386 (472)
++++.+.... ...+.+++....++.+++.|+.++....-|+++ . ..+..... +.... ....
T Consensus 105 ~~~~~~~~~~--------~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~--~~~~~~~~-~~~~~-----~~v~ 165 (366)
T 3k26_A 105 MQCIKHYVGH--------GNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---D--TLVAIFGG-VEGHR-----DEVL 165 (366)
T ss_dssp CCEEEEEESC--------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---T--EEEEEECS-TTSCS-----SCEE
T ss_pred ceEeeeecCC--------CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---C--eEEEEecc-ccccc-----Ccee
Confidence 9988877644 122222223333678888999888755434432 1 22221000 01111 1222
Q ss_pred -EEEE-CCEEEEec--CCeEEEeeccccccc-------------cccCCcceeecc-ccccccCCCCceEEEeecCceEE
Q 012060 387 -IHCY-KNQVFVGR--GGSLEVWSRVREGRN-------------RSCSEGLFRRNF-VDRVEDSGRGAISRIDAGGNRLF 448 (472)
Q Consensus 387 -~~~~-~g~l~~~~--g~~~~v~~~~~~~~~-------------~~~~~~~~r~~~-~~~~~~~~~~~i~~~~~gg~r~f 448 (472)
++.. +++.++++ ++.|.+|+-...+.. ..+........+ .-.......+.|..+++-|+. +
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l 244 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDL-I 244 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTE-E
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCE-E
Confidence 2221 24444443 489999986422000 000000000000 000111245679999998665 5
Q ss_pred EeeeccceeEEeecCCC
Q 012060 449 VSREDVEGIEVWESSNL 465 (472)
Q Consensus 449 ~~~~~~~~~~vw~~~~~ 465 (472)
++-.....|-||+....
T Consensus 245 ~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKM 261 (366)
T ss_dssp EEECSSSEEEEEEESST
T ss_pred EEEecCCEEEEEeCCCc
Confidence 55555677999996543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.77 Score=44.95 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=72.3
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCccccc
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
+.+++.|+ .+| ++-.||..+.+.... +......+.+++.. ++.++| |+.+ .+|-.||..+.+.+.
T Consensus 210 g~~l~sgs--~Dg-----~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D----~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 210 GNTFVSGG--CDK-----KAMVWDMRSGQCVQA--FETHESDVNSVRYYPSGDAFASGSDD----ATCRLYDLRADREVA 276 (354)
T ss_dssp CCEEEEEE--TTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEE
T ss_pred CCEEEEEe--CCC-----eEEEEECCCCcEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEE
Confidence 46777787 555 456677766543322 11112223335554 455666 6554 468899998854333
Q ss_pred ccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeec
Q 012060 257 EIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVD 336 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~ 336 (472)
.+.. .. .........+. .++.+.++|+.+ +.|.+||.++++.+-..... ...+..++...
T Consensus 277 ~~~~---~~-~~~~~~~~~~s-~~g~~l~~g~~d------~~i~vwd~~~~~~~~~l~~h--------~~~v~~l~~sp- 336 (354)
T 2pbi_B 277 IYSK---ES-IIFGASSVDFS-LSGRLLFAGYND------YTINVWDVLKGSRVSILFGH--------ENRVSTLRVSP- 336 (354)
T ss_dssp EECC---TT-CCSCEEEEEEC-TTSSEEEEEETT------SCEEEEETTTCSEEEEECCC--------SSCEEEEEECT-
T ss_pred EEcC---CC-cccceeEEEEe-CCCCEEEEEECC------CcEEEEECCCCceEEEEECC--------CCcEEEEEECC-
Confidence 2221 00 00011122222 456666777643 46999999998855444332 11122222233
Q ss_pred CCeEEEEcccCCC
Q 012060 337 ELTLFKICSKSGD 349 (472)
Q Consensus 337 ~~~iy~vGg~~g~ 349 (472)
++..++.|+.|+.
T Consensus 337 dg~~l~sgs~D~~ 349 (354)
T 2pbi_B 337 DGTAFCSGSWDHT 349 (354)
T ss_dssp TSSCEEEEETTSE
T ss_pred CCCEEEEEcCCCC
Confidence 6677778888764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.80 E-value=1.9 Score=40.76 Aligned_cols=101 Identities=10% Similarity=0.071 Sum_probs=56.0
Q ss_pred eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCC
Q 012060 227 SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPR 305 (472)
Q Consensus 227 l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~ 305 (472)
.++.+|+ +.. .++|.+||+.+.+++..+.... ...+....+.+-+..+|+++. ..+.|..||+.
T Consensus 9 ~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~ 73 (349)
T 1jmx_B 9 AGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPD-----KFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLD 73 (349)
T ss_dssp TTCEEEEEEET----TTEEEEEETTTTEEEEEEECSS-----CCSSCEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred CCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCC-----CCCCceeEECCCCCEEEEEeC------CCCcEEEEeCC
Confidence 3566888 433 3578999999966444333210 001333444444456888753 23579999999
Q ss_pred CCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEc
Q 012060 306 SGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 306 ~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
+++++++...+.. ...+ +....+++....+..||+.+
T Consensus 74 t~~~~~~~~~~~~-~~~~-~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 74 TCKNTFHANLSSV-PGEV-GRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp TTEEEEEEESCCS-TTEE-EECSSCEEECTTSSEEEEEE
T ss_pred CCcEEEEEEcccc-cccc-cccccceEECCCCCEEEEEc
Confidence 9998877664310 0000 11122334455566677655
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=1 Score=51.47 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=85.1
Q ss_pred cccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeE
Q 012060 169 DNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVL 245 (472)
Q Consensus 169 ~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE 245 (472)
+.+.++++ -++...+.|+ .+| ++..||..+.+-.. .+......+.+++.. ++.+.| |+.+ .+|-
T Consensus 616 ~~v~~~~~s~~~~~l~s~~--~d~-----~i~vw~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~v~ 682 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCG--ADK-----TLQVFKAETGEKLL--DIKAHEDEVLCCAFSSDDSYIATCSAD----KKVK 682 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred ccEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCCEEE--EeccCCCCEEEEEEecCCCEEEEEeCC----CeEE
Confidence 33444444 3567777887 455 46677776654322 222222333345554 344555 6544 4799
Q ss_pred EEeCCCcccccccccccCCCcccccccceeEEe-cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcc
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVGKLTWIP-ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARF 324 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~-~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~ 324 (472)
.||..+.+++..+.... .......+.+ .++.++++|+.+ +.|..||.++++++.+....
T Consensus 683 vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~h-------- 742 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHS------EQVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRNTMFGH-------- 742 (1249)
T ss_dssp EEETTTCCEEEEEECCS------SCEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEEEECCC--------
T ss_pred EEECCCCceEEEEcCCC------CcEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhheecCC--------
Confidence 99999965444332210 0112223333 255666777643 46999999999977776654
Q ss_pred cccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 325 GDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 325 ~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
...+..++... ++.+++.|+.++....-|+++
T Consensus 743 ~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 743 TNSVNHCRFSP-DDELLASCSADGTLRLWDVRS 774 (1249)
T ss_dssp SSCEEEEEECS-STTEEEEEESSSEEEEEEGGG
T ss_pred CCCEEEEEEec-CCCEEEEEECCCeEEEEeCCC
Confidence 12222223344 666778888887655445543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.66 E-value=1.3 Score=42.84 Aligned_cols=147 Identities=9% Similarity=0.026 Sum_probs=71.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcc--
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQ-- 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~-- 253 (472)
++.+++.|+ .+| .+..||..+..|..+..+......+.+++... +. |+.|+.+ .+|-.||..+.+
T Consensus 22 ~g~~l~~~~--~d~-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 22 QRTEFVTTT--ATN-----QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD----RNAYVYEKRPDGTW 90 (377)
T ss_dssp SSSEEECCC--SSS-----CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT----SSEEEC------CC
T ss_pred CCCEEEEec--CCC-----EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC----CeEEEEEcCCCCce
Confidence 567777777 444 45667777777777776665555554466553 34 4446544 368889988733
Q ss_pred -cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee---eeEEcCCCCCCCCccccccc
Q 012060 254 -ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV---VWETNEPGSGRSARFGDSFA 329 (472)
Q Consensus 254 -~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~---vW~~~~~~~~~~~R~~~~~~ 329 (472)
+...+.. +.-....+.+.+ ++.++++|+.+ +.|.+||.++++. .=....+ . ...+.
T Consensus 91 ~~~~~~~~------~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~----h---~~~v~ 150 (377)
T 3dwl_C 91 KQTLVLLR------LNRAATFVRWSP-NEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRP----L---RSTIL 150 (377)
T ss_dssp CCEEECCC------CSSCEEEEECCT-TSSCCEEEESS------SCEEECCC-----CCCCEEECSS----C---CSCEE
T ss_pred eeeeEecc------cCCceEEEEECC-CCCEEEEEecC------CeEEEEEECCcccceeeeEeecc----c---CCCeE
Confidence 1111110 000112222333 45556666643 4699999998862 1222221 1 11122
Q ss_pred ceeeeecCCeEEEEcccCCCccccccc
Q 012060 330 DVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 330 d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+++... ++.+++.|+.++....-|++
T Consensus 151 ~~~~~~-~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 151 SLDWHP-NNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp EEEECT-TSSEEEEEESSSCEEEEEEC
T ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEEE
Confidence 222233 66788899988776554554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.63 E-value=2.6 Score=41.88 Aligned_cols=232 Identities=13% Similarity=0.116 Sum_probs=105.3
Q ss_pred cceeeccCCcEEEeee---CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 133 TFTASSDDGSLWIAHG---GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 133 a~r~~~~~g~l~va~G---G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++...|+ +..+ +.| |.|..||... ........+-..+. ....++.+.+.|+ .++ .+..+|......
T Consensus 152 sv~fspd-g~~l-asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s~~~~~l~sgs--~d~-----~i~~~d~~~~~~ 221 (420)
T 4gga_A 152 SVAWIKE-GNYL-AVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSWNSYILSSGS--RSG-----HIHHHDVRVAEH 221 (420)
T ss_dssp EEEECTT-SSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTEEEEEE--TTS-----EEEEEETTSSSC
T ss_pred EEEECCC-CCEE-EEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEeeCCCEEEEEe--CCC-----ceeEeeecccce
Confidence 3444444 5555 445 3588888433 22111122222222 2235788888887 444 233444433221
Q ss_pred ccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
.+..+......+.++... ++...+ ++.+ +.+..||..+.+.....-+. ..-...+-....+.+.+..++++
T Consensus 222 -~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D----~~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 222 -HVATLSGHSQEVCGLRWAPDGRHLASGGND----NLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEESSCCSSCSCCSEE--ECCCSSCEEEEEECTTCTTEEEE
T ss_pred -eeEEecccccceeeeeecCCCCeeeeeecc----ccceEEeeccccccceeeee--ecccCCceeeeeeCCCcccEEEE
Confidence 111111111111112222 344445 5544 46778888874311000000 00000111234455566666665
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc-cCCCcccccccccCCCCcEE
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS-KSGDIAMADLRNLGEDPWVY 365 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg-~~g~~~~~dl~s~e~d~W~~ 365 (472)
++ |. ..++|..||.+++++........ .+..+.....+..|++.+| .++.+..-|+ ..+..
T Consensus 295 ~~--gs--~D~~I~iwd~~t~~~~~~~~~~~---------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~-----~~~~~ 356 (420)
T 4gga_A 295 GG--GT--SDRHIRIWNVCSGACLSAVDAHS---------QVCSILWSPHYKELISGHGFAQNQLVIWKY-----PTMAK 356 (420)
T ss_dssp EE--CT--TTCEEEEEETTTTEEEEEEECSS---------CEEEEEEETTTTEEEEEECTTTCCEEEEET-----TTCCE
T ss_pred Ee--ec--CCCEEEEEeCCccccceeecccc---------ceeeeeecCCCCeEEEEEecCCCEEEEEEC-----CCCcE
Confidence 44 22 24689999999999777666441 1111112444566665555 4444332122 22445
Q ss_pred eecCCCCcccCCCCCCCcCe-EEEE-ECCEEEEecC--CeEEEeecc
Q 012060 366 MEDKNPSMISSSGNNNGENK-LIHC-YKNQVFVGRG--GSLEVWSRV 408 (472)
Q Consensus 366 ~~~~~~~m~~~~~~~~~~~~-~~~~-~~g~l~~~~g--~~~~v~~~~ 408 (472)
+.. +.... ..+ .++. -+|+.+++++ +.|-+|.=-
T Consensus 357 v~~----l~gH~-----~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 357 VAE----LKGHT-----SRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEE----ECCCS-----SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEE----EcCCC-----CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 554 32222 112 1222 2566666654 789999754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.05 Score=54.57 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred CcEEEeee-CceEEee-------cccCCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC--Ccccc
Q 012060 141 GSLWIAHG-GQISVYD-------WNLSHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTD 210 (472)
Q Consensus 141 g~l~va~G-G~Ve~YD-------W~~~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~ 210 (472)
+.+|+... |.|.++| |+... ..... ..++.++.+|++++ .+| .+.++|+.+ ..|.-
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s------~p~~~~g~~~v~~s--~dg-----~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQ------VPTHVEEPAFLPDP--NDG-----SLYTLGSKNNEGLTKL 75 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCC------CC-----CCEEECT--TTC-----CEEEC-----CCSEEC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC-CCcee------cceEcCCCEEEEeC--CCC-----EEEEEECCCCceeeee
Confidence 55663322 4588898 87722 11111 12235677888876 444 345666643 33543
Q ss_pred CCCCcCc-ccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEe
Q 012060 211 PSDPRIY-RATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIA 289 (472)
Q Consensus 211 ~a~m~~~-R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~ 289 (472)
....... .+.. +...++.||+|.. ...+-+||+.| |+ -.|+.-.+......+.++.||+++.
T Consensus 76 ~~~~~~~~~~sp--~~~~~~~v~~g~~----dg~v~a~D~~t-------G~---~~w~~~~~~~~~~~p~~~~v~~~~~- 138 (369)
T 2hz6_A 76 PFTIPELVQASP--CRSSDGILYMGKK----QDIWYVIDLLT-------GE---KQQTLSSAFADSLSPSTSLLYLGRT- 138 (369)
T ss_dssp SCCHHHHHTTCS--CC-----CCCCEE----EEEEEEECCC--------------------------------EEEEEE-
T ss_pred eccCccccccCc--eEecCCEEEEEeC----CCEEEEEECCC-------Cc---EEEEecCCCcccccccCCEEEEEec-
Confidence 2221111 1111 1124677888432 23688999999 44 3476644322222336778887532
Q ss_pred CCCccccceEEEEcCCCCeeeeEEcC
Q 012060 290 WGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 290 ~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.+.|.+||+++++++|+...
T Consensus 139 ------dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 139 ------EYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp ------EEEEECCCSSSSSCCCEEEE
T ss_pred ------CCEEEEEECCCCCEEEeEec
Confidence 35799999999999999763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=94.30 E-value=3.8 Score=39.04 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=109.3
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++...+.|+ .++ ++-.||..+.+-. ..+......+.+++... +.+.+ |+.+ .+|-.||.......
T Consensus 76 dg~~l~s~s--~D~-----~v~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D----~~i~vwd~~~~~~~ 142 (319)
T 3frx_A 76 DGAYALSAS--WDK-----TLRLWDVATGETY--QRFVGHKSDVMSVDIDKKASMIISGSRD----KTIKVWTIKGQCLA 142 (319)
T ss_dssp TSSEEEEEE--TTS-----EEEEEETTTTEEE--EEEECCSSCEEEEEECTTSCEEEEEETT----SCEEEEETTSCEEE
T ss_pred CCCEEEEEe--CCC-----EEEEEECCCCCee--EEEccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEE
Confidence 566677777 454 4566776655421 11221222333354443 44555 6554 46888998752211
Q ss_pred cccccccCCCcccccccceeEEe-----cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccc
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIP-----ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFAD 330 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~-----~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d 330 (472)
.-.+. ..| + ..+.+.+ .++.++++|+.+ +.|..||.++.+..-+.... ...+..
T Consensus 143 ~~~~h---~~~--v--~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h--------~~~v~~ 201 (319)
T 3frx_A 143 TLLGH---NDW--V--SQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGH--------NSNINT 201 (319)
T ss_dssp EECCC---SSC--E--EEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEECCC--------CSCEEE
T ss_pred EEecc---CCc--E--EEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheeecCC--------CCcEEE
Confidence 11111 111 1 1112222 245566777643 46999999998855554433 111112
Q ss_pred eeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecCCeEEEeecc
Q 012060 331 VDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRGGSLEVWSRV 408 (472)
Q Consensus 331 ~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g~~~~v~~~~ 408 (472)
++.. -++.+++.|+.++....=|+++- ..+.. +..... -..++.. +..|.++..+.+.||+-.
T Consensus 202 ~~~s-p~g~~l~s~~~dg~i~iwd~~~~-----~~~~~----~~~~~~-----v~~~~~sp~~~~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 202 LTAS-PDGTLIASAGKDGEIMLWNLAAK-----KAMYT----LSAQDE-----VFSLAFSPNRYWLAAATATGIKVFSLD 266 (319)
T ss_dssp EEEC-TTSSEEEEEETTCEEEEEETTTT-----EEEEE----EECCSC-----EEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred EEEc-CCCCEEEEEeCCCeEEEEECCCC-----cEEEE----ecCCCc-----EEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence 2223 36788889998876543344321 22221 111110 1112211 234555566789999754
Q ss_pred ccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecC
Q 012060 409 REGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 409 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~ 463 (472)
.. .+-. .+|..+.+..+. ..+.|..++|- |..| ++=.+...|.||+-.
T Consensus 267 ~~----~~~~-~~~~~~~~~~~~-~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 267 PQ----YLVD-DLRPEFAGYSKA-AEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp TE----EEEE-EECCCCTTCCGG-GCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred cC----eeee-ccCccccccccC-cCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 22 0000 113222222111 23357777664 5455 455556679999853
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=1.8 Score=47.01 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=85.1
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCcc-----ccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVR-----THLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R-----~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t 205 (472)
++.||+... +.|.++| |+. ....... ++. ...++++.++.||+... ++ .+-++|..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~v~v~~~---dg-----~l~alD~~t 147 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV-VNRGVALWKGKVYVGAW---DG-----RLIALDAAT 147 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCS-CCCCCEEETTEEEEECT---TS-----EEEEEETTT
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccC-CCCCceEECCEEEEEcC---CC-----EEEEEECCC
Confidence 467775433 4588899 887 3322111 111 11134456788887654 33 345556543
Q ss_pred C--ccccCCC-C-c-CcccceeEEEEeCCeEEEEecCC--CCCceeEEEeCCCcccccccccccC---------------
Q 012060 206 A--HWTDPSD-P-R-IYRATVTAIADSPTTVFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSG--------------- 263 (472)
Q Consensus 206 ~--~W~~~a~-m-~-~~R~~~~ava~l~g~IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~--------------- 263 (472)
- .|..-.. - . ...... +..+.++.||++.... .....|-.||+.|.+.+-.+.....
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~-~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 148 GKEVWHQNTFEGQKGSLTITG-APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp CCEEEEEETTTTCCSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred CCEEeeecCCcCcCcCccccc-CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence 3 3665322 0 0 001111 2445689999943221 2246789999999442211100000
Q ss_pred CCccc---------ccc--cceeEEecCCeEEEEEEeC------------CCccccceEEEEcCCCCeeeeEEcCC
Q 012060 264 ASSKN---------MAV--GKLTWIPATGVVLGSAIAW------------GAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 264 ~~W~~---------v~~--m~~~~~~~~g~Lyv~Gg~~------------g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..|.. ... .....-+-.++||+..+.. |..-+.++|-.+|++|++++|+....
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 11210 000 0001123578999865432 22224568999999999999998743
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=3.3 Score=38.19 Aligned_cols=230 Identities=10% Similarity=0.056 Sum_probs=113.4
Q ss_pred cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEE
Q 012060 169 DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLL 246 (472)
Q Consensus 169 ~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~ 246 (472)
+.+.++++-++..++.|+ .+| .+..||..+.+-...- ......+.+++... +. |++|+.++ .+-.
T Consensus 19 ~~v~~~~~~~~~~l~s~~--~dg-----~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~ 85 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVS--RDG-----TVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDT----MING 85 (313)
T ss_dssp SCEEEEEEEETTEEEEEE--TTS-----EEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTS----CEEE
T ss_pred CCcEEEEecCCCEEEEEE--cCC-----cEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCC----eEEE
Confidence 334455566777777887 455 4455665444322211 11122222355443 34 44465543 5666
Q ss_pred EeCCCcc---cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCc
Q 012060 247 IDKSTLQ---ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSAR 323 (472)
Q Consensus 247 YDp~t~~---~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R 323 (472)
||....+ ++..+.. +. .....+..++.++++|+. .+.|..|| +++.++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~------~~---~~i~~~~~~~~~l~~~~~------d~~i~~~d--~~~~~~~~~~~------- 141 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIG------HQ---GNVCSLSFQDGVVISGSW------DKTAKVWK--EGSLVYNLQAH------- 141 (313)
T ss_dssp EETTCCTTSCC-CEECC------CS---SCEEEEEEETTEEEEEET------TSEEEEEE--TTEEEEEEECC-------
T ss_pred EEeeecCCCCcccchhh------cc---cCEEEEEecCCEEEEEeC------CCCEEEEc--CCcEEEecccC-------
Confidence 7765522 1111110 00 011112225556666663 34799999 56655777655
Q ss_pred ccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEEe-cCCe
Q 012060 324 FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFVG-RGGS 401 (472)
Q Consensus 324 ~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~~-~g~~ 401 (472)
...+.+++....++.++++|+.++....-|.. ..+.. +.....+ .-..++ .-++++++. .++.
T Consensus 142 -~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~----~~~~~~~---~i~~~~~~~~~~~~~~~~dg~ 206 (313)
T 3odt_A 142 -NASVWDAKVVSFSENKFLTASADKTIKLWQND-------KVIKT----FSGIHND---VVRHLAVVDDGHFISCSNDGL 206 (313)
T ss_dssp -SSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------EEEEE----ECSSCSS---CEEEEEEEETTEEEEEETTSE
T ss_pred -CCceeEEEEccCCCCEEEEEECCCCEEEEecC-------ceEEE----EeccCcc---cEEEEEEcCCCeEEEccCCCe
Confidence 12222223344367778888888765432211 11211 1110110 112233 346675444 3488
Q ss_pred EEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecCC
Q 012060 402 LEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 402 ~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
|.+|+-... +. .+.+- ...+.|+.+++--+..+++=.....|-||+...
T Consensus 207 i~i~d~~~~--------~~-~~~~~-----~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 207 IKLVDMHTG--------DV-LRTYE-----GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEEEETTTC--------CE-EEEEE-----CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred EEEEECCch--------hh-hhhhh-----cCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 999986422 11 11111 234679999987664566667778899998543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=4.1 Score=39.18 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=110.1
Q ss_pred eeeeecCCCCccccC---CCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcc-cccccccccCC---Cccc
Q 012060 197 LSSSRHVASAHWTDP---SDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQ-ISSEIGRQSGA---SSKN 268 (472)
Q Consensus 197 sve~ydp~t~~W~~~---a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~-~~~~~~~~~~~---~W~~ 268 (472)
.+..+|+.+.+.... ..+..++ ++++. +|.||+.... .+.|-+||+.... .+..++..... .-..
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~----gia~d~~g~l~v~d~~---~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPH----GLSIDTDGNYWVTDVA---LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEE----EEEECTTSCEEEEETT---TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred cEEEEECCCCeEEeccCCCccCCce----EEEECCCCCEEEEECC---CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 466677765443221 1122222 36654 5779994222 3579999997632 34444431100 0111
Q ss_pred ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCC---CCcccccccceeeeecCCeEEEEcc
Q 012060 269 MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGR---SARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 269 v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~---~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
..|..+...+.++.||++... ..+.|.+||+ +++.++++....... ...+. .-..+++...++.||+...
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~-----~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~-~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGY-----CNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFS-VPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECS-----SCCEEEEECT-TSCEEEEECEECCSSSCCTTEES-CEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEeCCCCeEEEEeCC-----CCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccC-CCcEEEEECCCCEEEEEEC
Confidence 123323333348999998641 1357999995 556566664332110 00110 0112334444599999886
Q ss_pred cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC---------CeEEEeecccccccccc
Q 012060 346 KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG---------GSLEVWSRVREGRNRSC 416 (472)
Q Consensus 346 ~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g---------~~~~v~~~~~~~~~~~~ 416 (472)
.++.....|+. +++....-. ....+. .-..++...+.+|+..| ..|.+|+...-
T Consensus 216 ~~~~I~~~~~~---~G~~~~~~~------~~~~~~--~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g------ 278 (329)
T 3fvz_A 216 ENGRIQCFKTD---TKEFVREIK------HASFGR--NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG------ 278 (329)
T ss_dssp TTTEEEEEETT---TCCEEEEEC------CTTTTT--CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC------
T ss_pred CCCEEEEEECC---CCcEEEEEe------ccccCC--CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC------
Confidence 55443221211 233322211 111110 11233334455555543 24556653211
Q ss_pred CCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeecC
Q 012060 417 SEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWESS 463 (472)
Q Consensus 417 ~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~ 463 (472)
++... ++.. .........|++.-| .|||+-..-+.|-+|+..
T Consensus 279 --~~~~~--~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 279 --EIIDV--FKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp --CEEEE--ECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred --eEEEE--EcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 11111 1110 112335777887654 899998888899999754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=2 Score=42.57 Aligned_cols=154 Identities=8% Similarity=0.057 Sum_probs=80.7
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC--cccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI--YRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~--~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
++.+++.|+ .+| .+..||..+.+-.. .+.. ....+.+++.. ++.+.+ |+.+ ..|-.||..+.+
T Consensus 181 ~~~~l~~~~--~d~-----~i~iwd~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALT--NLS-----RVIIFDIRTLERLQ--IIENSPRHGAVSSICIDEECCVLILGTTR----GIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEE--TTS-----EEEEEETTTCCEEE--EEECCGGGCCEEEEEECTTSCEEEEEETT----SCEEEEETTTTE
T ss_pred CCCEEEEEe--CCC-----eEEEEeCCCCeeeE--EEccCCCCCceEEEEECCCCCEEEEEcCC----CeEEEEEcCCcc
Confidence 367777777 444 56677776654221 1111 12233335543 445555 6554 468899999866
Q ss_pred cccccccccCCCcccccccceeEEe---cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC-C-------
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIP---ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS-A------- 322 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~---~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~-~------- 322 (472)
++..+.. ..-.. -..+.+.+ -++.++++|+. .+.|..||.++++++-+....-.... .
T Consensus 248 ~~~~~~~---~~~~~--v~~~~~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 248 LIRSWSF---GDHAP--ITHVEVCQFYGKNSVIVVGGSS------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp EEEEEBC---TTCEE--EEEEEECTTTCTTEEEEEEEST------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred EEEEEec---CCCCc--eEEEEeccccCCCccEEEEEcC------CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 5443321 00011 12222332 24556666652 45799999999997777664310000 0
Q ss_pred ----------cccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 323 ----------RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 323 ----------R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
.....+..++.. ++.+++.|+.++.+..-|+++
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTC
T ss_pred ccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCC
Confidence 011112223333 678888999887765445543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.13 E-value=4.4 Score=40.19 Aligned_cols=235 Identities=15% Similarity=0.163 Sum_probs=110.4
Q ss_pred cceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEe
Q 012060 171 ITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLID 248 (472)
Q Consensus 171 v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YD 248 (472)
|+++++. ++..+++|+ .+| ++..||..+.+-. ..+......+.+++ .++.+.+ |+.+ ..+-.||
T Consensus 150 V~sv~fspdg~~lasgs--~Dg-----~v~iWd~~~~~~~--~~~~~h~~~v~~~s-~~~~~l~sgs~d----~~i~~~d 215 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGT--SSA-----EVQLWDVQQQKRL--RNMTSHSARVGSLS-WNSYILSSGSRS----GHIHHHD 215 (420)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----CEEEEETTTTEEE--EEECCCSSCEEEEE-EETTEEEEEETT----SEEEEEE
T ss_pred EEEEEECCCCCEEEEEE--CCC-----eEEEEEcCCCcEE--EEEeCCCCceEEEe-eCCCEEEEEeCC----CceeEee
Confidence 4556654 567888888 555 4566777665422 22222233333343 4555656 6544 4677888
Q ss_pred CCCccc-ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc
Q 012060 249 KSTLQI-SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 249 p~t~~~-~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~ 327 (472)
..+... +..+.. .... .....+ .-++..+++|+.+ +.|.+||.++++..+...... ......
T Consensus 216 ~~~~~~~~~~~~~----h~~~--~~~~~~-~~~g~~l~s~~~D------~~v~i~~~~~~~~~~~~~~~~----~~~~~~ 278 (420)
T 4gga_A 216 VRVAEHHVATLSG----HSQE--VCGLRW-APDGRHLASGGND------NLVNVWPSAPGEGGWVPLQTF----TQHQGA 278 (420)
T ss_dssp TTSSSCEEEEEEC----CSSC--EEEEEE-CTTSSEEEEEETT------SCEEEEESSCCSSCSCCSEEE----CCCSSC
T ss_pred ecccceeeEEecc----cccc--eeeeee-cCCCCeeeeeecc------ccceEEeeccccccceeeeee----cccCCc
Confidence 776220 000000 0000 011112 2456666776643 468999988876222111110 000111
Q ss_pred ccceeeeecCCeEEEEcc--cCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC---CeE
Q 012060 328 FADVDVDVDELTLFKICS--KSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG---GSL 402 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg--~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g---~~~ 402 (472)
+..++....+..++++|+ .|+....-|++ ....+.. +..... .........++.|+++.| +.|
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~-----t~~~~~~----~~~~~~---v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-----SGACLSA----VDAHSQ---VCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETT-----TTEEEEE----EECSSC---EEEEEEETTTTEEEEEECTTTCCE
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCC-----cccccee----eccccc---eeeeeecCCCCeEEEEEecCCCEE
Confidence 212223344666766654 44433221222 1223322 111111 011111122445555533 789
Q ss_pred EEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc-eEEEeeeccceeEEeec
Q 012060 403 EVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN-RLFVSREDVEGIEVWES 462 (472)
Q Consensus 403 ~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~ 462 (472)
.||+-... .. -.-+-++ .+.|+.+++--| ++++|=.+-..|-||+-
T Consensus 347 ~iwd~~~~--------~~-v~~l~gH-----~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 347 VIWKYPTM--------AK-VAELKGH-----TSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEETTTC--------CE-EEEECCC-----SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEECCCC--------cE-EEEEcCC-----CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 99986422 11 1123333 457999998532 45566666678999974
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.93 E-value=3.4 Score=38.76 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=109.2
Q ss_pred cccccceeeee-C-CeEEEEcCcCCCCceecceeeeecCCCCcccc---CCCCcCcccceeEEEEe-CCeEEE-EecCCC
Q 012060 167 HLDNITSIRHV-W-SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD---PSDPRIYRATVTAIADS-PTTVFS-SLVCPH 239 (472)
Q Consensus 167 ~~~~v~~v~~l-~-~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~---~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~ 239 (472)
|-+.|+++++. + +.+.+.|| .+| ++-.+|..+.+... ...+......+.+++.. ++.+.+ |+.+
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s--~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-- 107 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSAS--RDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-- 107 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEE--TTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred ccCCEEEEEEeCCCCCEEEEEc--CCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc--
Confidence 44556666654 2 56777887 555 34445544333211 11111112233334444 344444 6554
Q ss_pred CCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSG 319 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~ 319 (472)
..|..|+....+........ ............+.++++|+.+ +.+..||.+.... .......
T Consensus 108 --~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~s~s~d------~~~~~~d~~~~~~-~~~~~~~-- 169 (340)
T 4aow_A 108 --GTLRLWDLTTGTTTRRFVGH-------TKDVLSVAFSSDNRQIVSGSRD------KTIKLWNTLGVCK-YTVQDES-- 169 (340)
T ss_dssp --SEEEEEETTTTEEEEEEECC-------SSCEEEEEECTTSSCEEEEETT------SCEEEECTTSCEE-EEECSSS--
T ss_pred --ccceEEeecccceeeeecCC-------CCceeEEEEeecCccceeecCC------CeEEEEEeCCCce-EEEEecc--
Confidence 36778888874421111110 0001111122344555666643 4588999887752 1222111
Q ss_pred CCCcccccccceeeee-cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEEE-ECCEEEE
Q 012060 320 RSARFGDSFADVDVDV-DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIHC-YKNQVFV 396 (472)
Q Consensus 320 ~~~R~~~~~~d~~v~~-~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~-~~g~l~~ 396 (472)
.. ..+..++... -...+++.|+.++....-|+++ ...+.. +..... .+ .++. -++++++
T Consensus 170 ~~----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-----~~~~~~----~~~h~~-----~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 170 HS----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-----CKLKTN----HIGHTG-----YLNTVTVSPDGSLCA 231 (340)
T ss_dssp CS----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-----TEEEEE----ECCCSS-----CEEEEEECTTSSEEE
T ss_pred cc----CcccceEEccCCCCcEEEEEcCCCEEEEEECCC-----CceeeE----ecCCCC-----cEEEEEECCCCCEEE
Confidence 01 1111111222 2345677788776543323322 233332 111111 11 2222 2456666
Q ss_pred ecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 397 GRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 397 ~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
+++ +.|-+|+-... +.+ +. + .....|+.+.+=-++.+++=.....|.||+..
T Consensus 232 s~s~Dg~i~iwd~~~~-------~~~-~~-~------~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEG-------KHL-YT-L------DGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp EEETTCEEEEEETTTT-------EEE-EE-E------ECSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred EEeCCCeEEEEEeccC-------cee-ee-e------cCCceEEeeecCCCCceeeccCCCEEEEEECC
Confidence 644 88999976422 111 11 1 12335777777666666666666788899753
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=2.6 Score=39.86 Aligned_cols=183 Identities=11% Similarity=0.102 Sum_probs=88.1
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
..|..||..+.+++..+.... .....+.+.+ ++.++++|+. .+.|..||.++++++.+...+
T Consensus 54 g~i~vwd~~~~~~~~~~~~h~------~~v~~~~~~~-~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~----- 115 (369)
T 3zwl_B 54 SSASVWYSLNGERLGTLDGHT------GTIWSIDVDC-FTKYCVTGSA------DYSIKLWDVSNGQCVATWKSP----- 115 (369)
T ss_dssp SCEEEEETTTCCEEEEECCCS------SCEEEEEECT-TSSEEEEEET------TTEEEEEETTTCCEEEEEECS-----
T ss_pred CEEEEEeCCCchhhhhhhhcC------CcEEEEEEcC-CCCEEEEEeC------CCeEEEEECCCCcEEEEeecC-----
Confidence 368889988865444332210 0112233433 4556666663 357999999999977777633
Q ss_pred CcccccccceeeeecCCeEEEEcccC-----CCcccccccccC-CCCcEEeecCCCC-cccCCCCCCCcCeEEEEE--CC
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKS-----GDIAMADLRNLG-EDPWVYMEDKNPS-MISSSGNNNGENKLIHCY--KN 392 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~-----g~~~~~dl~s~e-~d~W~~~~~~~~~-m~~~~~~~~~~~~~~~~~--~g 392 (472)
..+..++... ++..+++++.+ +....-|++.-. ...+......... +...... ......++ ++
T Consensus 116 ----~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 187 (369)
T 3zwl_B 116 ----VPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL---DAATVAGWSTKG 187 (369)
T ss_dssp ----SCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC---CCEEEEEECGGG
T ss_pred ----CCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc---cceeEEEEcCCC
Confidence 1122222334 55556666655 444433443322 2222222110000 1111100 01222222 23
Q ss_pred -EEEEe-cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCC
Q 012060 393 -QVFVG-RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 393 -~l~~~-~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
.|++. .++.|.+|+-... ... .+.+- ...+.|..+++ -|..|++. .....|-||+...
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~-------~~~-~~~~~-----~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNN-------YEY-VDSID-----LHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVST 249 (369)
T ss_dssp CEEEEEETTSEEEEEETTTT-------TEE-EEEEE-----CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTT
T ss_pred CEEEEEcCCCEEEEEECCCC-------cEe-EEEEe-----cCCCceeEEEECCCCCEEEEe-cCCceEEEEECCC
Confidence 34433 3488999986421 111 11111 13457888887 45555544 5556789998654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.91 E-value=3.9 Score=37.70 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=84.7
Q ss_pred eeeccCCcEEEeee--CceEEee-ccc-C--CCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 135 TASSDDGSLWIAHG--GQISVYD-WNL-S--HSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 135 r~~~~~g~l~va~G--G~Ve~YD-W~~-~--~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
...|. +..+++.+ |.+..|| |.. . .......+-..+.++.. ++..++.|+ .+| .+..||......
T Consensus 66 ~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~--~d~-----~i~~~d~~~~~~ 136 (313)
T 3odt_A 66 CYDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGS--WDK-----TAKVWKEGSLVY 136 (313)
T ss_dssp EEETT-TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEE--TTS-----EEEEEETTEEEE
T ss_pred EECCC-CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEe--CCC-----CEEEEcCCcEEE
Confidence 33444 44443433 4588888 543 1 12222223334444544 677777777 454 344455222222
Q ss_pred ccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEE
Q 012060 209 TDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLG 285 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv 285 (472)
.... ....+.+++.. ++.+++ ++.+ ..+..||..+. +..+.. -.........+.+ ++. ++
T Consensus 137 ~~~~----~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~--~~~~~~-----~~~~~i~~~~~~~-~~~-~~ 199 (313)
T 3odt_A 137 NLQA----HNASVWDAKVVSFSENKFLTASAD----KTIKLWQNDKV--IKTFSG-----IHNDVVRHLAVVD-DGH-FI 199 (313)
T ss_dssp EEEC----CSSCEEEEEEEETTTTEEEEEETT----SCEEEEETTEE--EEEECS-----SCSSCEEEEEEEE-TTE-EE
T ss_pred eccc----CCCceeEEEEccCCCCEEEEEECC----CCEEEEecCce--EEEEec-----cCcccEEEEEEcC-CCe-EE
Confidence 2111 11222123332 454444 6544 36788885441 111111 0111112233333 455 55
Q ss_pred EEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 286 SAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 286 ~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
+|+. .+.|..||.++++++.+..... ..+..++... ++. ++.|+.++....-|++
T Consensus 200 ~~~~------dg~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~~~-~~~-l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 200 SCSN------DGLIKLVDMHTGDVLRTYEGHE--------SFVYCIKLLP-NGD-IVSCGEDRTVRIWSKE 254 (313)
T ss_dssp EEET------TSEEEEEETTTCCEEEEEECCS--------SCEEEEEECT-TSC-EEEEETTSEEEEECTT
T ss_pred EccC------CCeEEEEECCchhhhhhhhcCC--------ceEEEEEEec-CCC-EEEEecCCEEEEEECC
Confidence 5553 3579999999999888876551 1222222233 344 6678877765443433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=93.66 E-value=5.2 Score=38.39 Aligned_cols=119 Identities=12% Similarity=0.123 Sum_probs=61.1
Q ss_pred eeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CC-EEEEec-C--CeEEEeec
Q 012060 333 VDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KN-QVFVGR-G--GSLEVWSR 407 (472)
Q Consensus 333 v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g-~l~~~~-g--~~~~v~~~ 407 (472)
..-.+..||+.+..++.....|++ ++++..+..... ...... .-..++.. +| +||++. + +.|.||.-
T Consensus 218 ~spdg~~l~v~~~~~~~v~v~~~~---~g~~~~~~~~~~-~~~~~~----~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 218 FNSDGKFAYLINEIGGTVIAFRYA---DGMLDEIQTVAA-DTVNAQ----GSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp ECTTSSEEEEEETTTCEEEEEEEE---TTEEEEEEEEES-CSSCCC----CEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred EcCCCCEEEEEcCCCCeEEEEEec---CCceEEeEEEec-CCCCCC----CcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 456566788887555544433333 344433332100 111111 11234432 34 588864 3 68999975
Q ss_pred cccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEeecCCCCcceE
Q 012060 408 VREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVWESSNLSGVVC 470 (472)
Q Consensus 408 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~~~~~~ 470 (472)
... +.++ +. +...+. +..+..+++- |.+||++-.+...|.||+-....|.+.
T Consensus 290 ~~~------~g~~-~~--~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 290 DET------NGTL-TK--VGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp CTT------TCCE-EE--EEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cCC------CCcE-EE--eeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 311 1111 10 111111 3345666664 889999998889999987655556543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.64 E-value=1.2 Score=44.74 Aligned_cols=153 Identities=10% Similarity=0.155 Sum_probs=83.1
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA 353 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~ 353 (472)
+.|.+.++.+.|+|+.+| .|.+||..+++..=..... .. ...+.+++..-.++.+++.|+.|+.+..-
T Consensus 125 l~~~P~~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~---gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGI---GA---GGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEECSSCTTCEEEEETTS------CEEEECSSCCSCCEEECCC---SS---SCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred EEEeCCCCCEEEEEeCCC------EEEEEECCCCCceeEEEcc---CC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 344444556677887544 6999999887621111111 00 12232333333467788889998875543
Q ss_pred cccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccc
Q 012060 354 DLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVE 430 (472)
Q Consensus 354 dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~ 430 (472)
|++ ++.-..+... .... ..-..++.. +++++++++ |.|.+|+--. +.+ + .+-+
T Consensus 193 d~~---~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~--------~~~-~-~~~~--- 248 (435)
T 4e54_B 193 DFK---GNILRVFASS----DTIN----IWFCSLDVSASSRMVVTGDNVGNVILLNMDG--------KEL-W-NLRM--- 248 (435)
T ss_dssp ETT---SCEEEEEECC----SSCS----CCCCCEEEETTTTEEEEECSSSBEEEEESSS--------CBC-C-CSBC---
T ss_pred ecc---CCceeEEecc----CCCC----ccEEEEEECCCCCEEEEEeCCCcEeeeccCc--------cee-E-EEec---
Confidence 443 2322223220 0011 012233332 566666655 7899998421 111 1 1111
Q ss_pred cCCCCceEEEee--cCceEEEeeeccceeEEeecCC
Q 012060 431 DSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 431 ~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~ 464 (472)
..+.|+.+++ -|+.+|++-..-..|-||+-..
T Consensus 249 --h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 249 --HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp --CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred --ccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 2457999988 4777888888778899998544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.35 Score=46.46 Aligned_cols=100 Identities=10% Similarity=0.164 Sum_probs=50.7
Q ss_pred CcEEEeee--CceEEeeccc-C--CCCCccccccccceeeee---CCeEEEEcCcCCCCceecceeeeecCCCCccccCC
Q 012060 141 GSLWIAHG--GQISVYDWNL-S--HSVTVRTHLDNITSIRHV---WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPS 212 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~--~m~~~R~~~~~v~~v~~l---~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a 212 (472)
+..++..+ |.|..||... . ...+.+.+-+.+.++++. ++.+.+.|+ .++ ++-.||..+.+|....
T Consensus 25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s--~D~-----~v~iWd~~~~~~~~~~ 97 (316)
T 3bg1_A 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS--YDR-----KVIIWREENGTWEKSH 97 (316)
T ss_dssp GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE--TTS-----CEEEECCSSSCCCEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE--CCC-----EEEEEECCCCcceEEE
Confidence 44443333 3477777332 1 111122233344455543 256777777 454 4567787776665443
Q ss_pred CCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCC
Q 012060 213 DPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKST 251 (472)
Q Consensus 213 ~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t 251 (472)
.+......+.+++... +.++| |+.+ .+|-.||..+
T Consensus 98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D----~~i~lwd~~~ 136 (316)
T 3bg1_A 98 EHAGHDSSVNSVCWAPHDYGLILACGSSD----GAISLLTYTG 136 (316)
T ss_dssp EECCCSSCCCEEEECCTTTCSCEEEECSS----SCEEEEEECS
T ss_pred EccCCCCceEEEEECCCCCCcEEEEEcCC----CCEEEEecCC
Confidence 3322233333455543 45556 6544 4677888776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=93.62 E-value=5 Score=37.98 Aligned_cols=118 Identities=9% Similarity=-0.006 Sum_probs=60.1
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCC-CCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCP-HKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~-~~l~sVE~YDp~t~~~ 254 (472)
-++.||+++. .+ ..+.+||+.+.+......... ..+.+++.. ++.||++.... .....|-+||+.+.+.
T Consensus 54 ~~g~l~~~~~--~~-----~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 54 RQGQLFLLDV--FE-----GNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp TTSCEEEEET--TT-----CEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCCEEEEEC--CC-----CEEEEEeCCCCcEEEEeeCCC--CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 3678888876 33 256778888777655321111 122235554 66788843221 1235788999988431
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
..-+.. .-....+.... ..-+|.||++...+........|.+||+.+++
T Consensus 125 ~~~~~~----~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 125 QDIIED----LSTAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp EEEECS----SSSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred EEEEcc----CccCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence 100000 00000011111 12467888865421110013579999998876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.58 E-value=4.2 Score=38.75 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
+|.||+++..++ .+.|..||+.+++ ++..... ...+....+++....+..||+.+..++....-|+..
T Consensus 50 dg~l~~~~~~~~----~~~v~~~~~~~g~--~~~~~~~----~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-- 117 (347)
T 3hfq_A 50 KDCLYSVDKEDD----EGGIAAWQIDGQT--AHKLNTV----VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-- 117 (347)
T ss_dssp TCEEEEEEEETT----EEEEEEEEEETTE--EEEEEEE----EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT--
T ss_pred CCeEEEEEecCC----CceEEEEEecCCc--EEEeeee----ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC--
Confidence 667888764321 3589999998887 4333210 000222233445666677887775555433323331
Q ss_pred CCCcEEeecCCCC--cccCCCCCCCcCeE-EEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCC
Q 012060 360 EDPWVYMEDKNPS--MISSSGNNNGENKL-IHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433 (472)
Q Consensus 360 ~d~W~~~~~~~~~--m~~~~~~~~~~~~~-~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 433 (472)
+.....+...... -+..|. ....+- ++. -+|+||++. ++.|.+|.-... +.+.. .. ......
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~---g~~~~---~~----~~~~~~ 185 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQ--DGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA---GQLSE---QS----VLTMEA 185 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTC--SSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT---SCEEE---EE----EEECCT
T ss_pred CCCeeecceeecCCCCCCccc--cCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC---CcEEE---ee----eEEcCC
Confidence 2223333220000 000110 001222 332 256788884 468999986411 11110 00 001112
Q ss_pred CCceEEEee--cCceEEEeeeccceeEEeecCCCCc
Q 012060 434 RGAISRIDA--GGNRLFVSREDVEGIEVWESSNLSG 467 (472)
Q Consensus 434 ~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~~~ 467 (472)
+..+..+++ -|.+||++-.....|.||+.....|
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 223555555 4778999988888899998654334
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.48 E-value=5.5 Score=38.09 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=75.8
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
++.++++|+.+ ++|..||.+.....++........ ...+.+++... ++.+++.|+.|+....-|++
T Consensus 118 ~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~~~~h----~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~--- 183 (330)
T 2hes_X 118 DGYYLATCSRD------KSVWIWETDESGEEYECISVLQEH----SQDVKHVIWHP-SEALLASSSYDDTVRIWKDY--- 183 (330)
T ss_dssp TSCEEEEEETT------SCEEEEECCTTCCCCEEEEEECCC----SSCEEEEEECS-SSSEEEEEETTSCEEEEEEE---
T ss_pred CCCEEEEEeCC------CEEEEEeccCCCCCeEEEEEeccC----CCceEEEEECC-CCCEEEEEcCCCeEEEEECC---
Confidence 56677777744 469999985432113332211000 11121122222 56778889988764432222
Q ss_pred CCCcEEeecCCCCcccCCCCCCCcCe-EEEEEC---CEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCC
Q 012060 360 EDPWVYMEDKNPSMISSSGNNNGENK-LIHCYK---NQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSG 433 (472)
Q Consensus 360 ~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~~---g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 433 (472)
++.|.++.. +..... .+ .++... +..++++ .+.|.+|+-...... ....++ .+...+...
T Consensus 184 ~~~~~~~~~----~~~h~~-----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~---~~~~~~--~~~~~~~~h 249 (330)
T 2hes_X 184 DDDWECVAV----LNGHEG-----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED---DQQEWV--CEAILPDVH 249 (330)
T ss_dssp TTEEEEEEE----ECCCSS-----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT---SCEEEE--EEEECCSCC
T ss_pred CCCeeEEEE----ccCCCC-----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc---ccceeE--Eeeeccccc
Confidence 345666554 322221 11 122221 3444444 478999975422000 000000 011111123
Q ss_pred CCceEEEeecCceEEEeeeccceeEEeec
Q 012060 434 RGAISRIDAGGNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 434 ~~~i~~~~~gg~r~f~~~~~~~~~~vw~~ 462 (472)
.+.|..+++.-+.++++=.+...|.||+.
T Consensus 250 ~~~v~~v~~s~~~~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 250 KRQVYNVAWGFNGLIASVGADGVLAVYEE 278 (330)
T ss_dssp SSCEEEEEECTTSCEEEEETTSCEEEEEE
T ss_pred ccceEEEEEcCCCEEEEEeCCCEEEEEEc
Confidence 45788888876667777777778899974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.34 E-value=2.9 Score=40.20 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=55.8
Q ss_pred CCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccccccc
Q 012060 337 ELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRN 413 (472)
Q Consensus 337 ~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~ 413 (472)
++.+++.|+.++....-|+++ .+-..+.. ..... .-..++. -+|+++++++ +.|.+|+--..
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~----~~~~~-----~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~--- 202 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYED---DSQYIVHS----AKSDV-----EYSSGVLHKDSLLLALYSPDGILDVYNLSSP--- 202 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSS---SCEEEEEC----CCSSC-----CCCEEEECTTSCEEEEECTTSCEEEEESSCT---
T ss_pred CCCEEEEEeCCCcEEEEECCC---CcEEEEEe----cCCCC-----ceEEEEECCCCCEEEEEcCCCEEEEEECCCC---
Confidence 567788899888765444442 22222221 00111 1122332 3577777644 89999986422
Q ss_pred cccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecCCC
Q 012060 414 RSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESSNL 465 (472)
Q Consensus 414 ~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~ 465 (472)
+.+ ...|-+ ...+.|+.++| -|..|+..-++ .|-||+....
T Consensus 203 ----~~~-~~~~~~----~h~~~v~~l~fs~~g~~l~s~~~~--~v~iwd~~~~ 245 (343)
T 3lrv_A 203 ----DQA-SSRFPV----DEEAKIKEVKFADNGYWMVVECDQ--TVVCFDLRKD 245 (343)
T ss_dssp ----TSC-CEECCC----CTTSCEEEEEECTTSSEEEEEESS--BEEEEETTSS
T ss_pred ----CCC-ccEEec----cCCCCEEEEEEeCCCCEEEEEeCC--eEEEEEcCCC
Confidence 111 111111 13468999998 46667666644 8999986554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.97 Score=49.20 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=69.4
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcCc--------ccceeEEEEeCCeEEEEecCCCCCcee
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRIY--------RATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~~--------R~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
++.++.||+... . +.+.++|..+ ..|+.-...... .... +++..++.||++..+ ..+
T Consensus 74 ~v~~g~vyv~~~--~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~v~v~~~d----g~l 140 (677)
T 1kb0_A 74 VVVDGIMYVSAS--W------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALWKGKVYVGAWD----GRL 140 (677)
T ss_dssp EEETTEEEEECG--G------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEETTEEEEECTT----SEE
T ss_pred EEECCEEEEECC--C------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCC-CceEECCEEEEEcCC----CEE
Confidence 457899998765 2 2344555443 236554332110 0112 266789999996433 367
Q ss_pred EEEeCCCcccccccccccCCCcccccc--------cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAV--------GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~--------m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
-++|..|.+ ..|+.-.. ....-...++.||++... +..+..+.|..||++|++.+|++...
T Consensus 141 ~alD~~tG~----------~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~-~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 141 IALDAATGK----------EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG-AEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp EEEETTTCC----------EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred EEEECCCCC----------EEeeecCCcCcCcCcccccCcEEECCEEEEEecc-cccCCCCEEEEEECCCCcEEEEeccC
Confidence 889999944 23554322 111112358899885432 11223578999999999999999754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.16 E-value=3.6 Score=44.77 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=82.8
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCccc-cc---cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVRT-HL---DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~-~~---~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++.||+... +.|.++| |+. ......-. .. .+..++++.++.||+... +| .+-.+|..+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg-----~l~AlDa~TG 141 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DG-----RLEAIDAKTG 141 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TS-----EEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CC-----EEEEEECCCC
Confidence 467774433 4588898 887 33321100 00 001123456788887653 33 3445555433
Q ss_pred --ccccCCC--C-cCcccceeEEEEeCCeEEEEecCC--CCCceeEEEeCCCcccccccccccCCCccccc-c-------
Q 012060 207 --HWTDPSD--P-RIYRATVTAIADSPTTVFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMA-V------- 271 (472)
Q Consensus 207 --~W~~~a~--m-~~~R~~~~ava~l~g~IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~------- 271 (472)
.|..... . ....... +-++.++.||+|.... ..-..|-.||+.|.+. .|+.-. +
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~-sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITG-APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE----------AWRFYTVPGDPKLPP 210 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEEESSCCCTTSCC
T ss_pred CEeeeecCcCCCCCCccccC-CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE----------EEEecccCCCccccc
Confidence 3654321 0 0011111 2445799999943221 2245789999999442 243210 0
Q ss_pred ----------------------c-----ceeEEecCCeEEEEEEeC------------CCccccceEEEEcCCCCeeeeE
Q 012060 272 ----------------------G-----KLTWIPATGVVLGSAIAW------------GAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 272 ----------------------m-----~~~~~~~~g~Lyv~Gg~~------------g~~~~~~sve~yDp~~~~~vW~ 312 (472)
. ....-+-.++||+..+.+ |..-+.++|-.+|++|++++|+
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0 001112578999865432 1111345899999999999999
Q ss_pred EcCC
Q 012060 313 TNEP 316 (472)
Q Consensus 313 ~~~~ 316 (472)
....
T Consensus 291 ~~~~ 294 (689)
T 1yiq_A 291 YQTT 294 (689)
T ss_dssp EESS
T ss_pred eecC
Confidence 8754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=3.7 Score=43.59 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=27.1
Q ss_pred cCCeEEEEEEeCC---------CccccceEEEEcCCCCeeeeEEcCC
Q 012060 279 ATGVVLGSAIAWG---------AFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g---------~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..++||+..+... ..-+.++|-++|++|++++|+....
T Consensus 245 ~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~ 291 (571)
T 2ad6_A 245 KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT 291 (571)
T ss_dssp TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCC
Confidence 4689999655321 1113468999999999999998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=93.13 E-value=5.8 Score=37.26 Aligned_cols=230 Identities=12% Similarity=0.103 Sum_probs=110.2
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC---CeEEE-EecCCCCCceeEEEeCCCc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP---TTVFS-SLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~---g~IYA-Gg~~~~~l~sVE~YDp~t~ 252 (472)
-++...+.|+ .++ ++..||....+...+..+......+.+++... +.+.| |+.+ .+|-.||..+.
T Consensus 19 ~~g~~las~s--~D~-----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D----~~v~iWd~~~~ 87 (297)
T 2pm7_B 19 YYGKRMATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVMIWKEENG 87 (297)
T ss_dssp TTSSEEEEEE--TTS-----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----TEEEEEEBSSS
T ss_pred CCCCEEEEEe--CCC-----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC----CEEEEEEcCCC
Confidence 3577778887 555 34556655433333333322233333355532 55666 6554 47889999873
Q ss_pred ccccccccccCCCccccc--------ccceeEEec-CCeEEEEEEeCCCccccceEEEEcCCCCee--eeEEcCCCCCCC
Q 012060 253 QISSEIGRQSGASSKNMA--------VGKLTWIPA-TGVVLGSAIAWGAFGYSGYVRMWDPRSGEV--VWETNEPGSGRS 321 (472)
Q Consensus 253 ~~~~~~~~~~~~~W~~v~--------~m~~~~~~~-~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~--vW~~~~~~~~~~ 321 (472)
+ |..+. ...+.+.+. .+.++++|+.+ +.|.+||.+++.. .-.....
T Consensus 88 ~------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h----- 144 (297)
T 2pm7_B 88 R------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAH----- 144 (297)
T ss_dssp C------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECC-----
T ss_pred c------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecc-----
Confidence 2 32221 122333332 26677777643 4799999987630 0011111
Q ss_pred Ccccccccceeeee------------cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCe-EEE
Q 012060 322 ARFGDSFADVDVDV------------DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENK-LIH 388 (472)
Q Consensus 322 ~R~~~~~~d~~v~~------------~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~ 388 (472)
...+-.++... .++.+++.|+.|+....-|+++- ..+|..... +.... ..+ .|+
T Consensus 145 ---~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~-~~~~~~~~~----l~~H~-----~~V~~v~ 211 (297)
T 2pm7_B 145 ---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLEST----LEGHS-----DWVRDVA 211 (297)
T ss_dssp ---SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETT-TTEEEEEEE----ECCCS-----SCEEEEE
T ss_pred ---cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCC-CceEEEEEE----ecCCC-----CceEEEE
Confidence 00000000011 12568889998876543344321 223444443 22222 122 222
Q ss_pred EEC----CEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeeccceeEEe
Q 012060 389 CYK----NQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDVEGIEVW 460 (472)
Q Consensus 389 ~~~----g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw 460 (472)
..- ++++++++ +.|.+|+.... .... ++..+.. ....+.|..+++- |..|+..- +...|-||
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~------~~~~-~~~~~~~--~~~~~~v~~~~~s~~g~~las~~-~D~~v~lw 281 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNE------QGPW-KKTLLKE--EKFPDVLWRASWSLSGNVLALSG-GDNKVTLW 281 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESST------TSCC-EEEESSS--SCCSSCEEEEEECSSSCCEEEEE-TTSCEEEE
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCC------CCcc-ceeeeec--ccCCCcEEEEEECCCCCEEEEEc-CCCcEEEE
Confidence 221 46777654 78999975321 0000 1101100 0123567777664 55555444 44578999
Q ss_pred ecC
Q 012060 461 ESS 463 (472)
Q Consensus 461 ~~~ 463 (472)
+..
T Consensus 282 ~~~ 284 (297)
T 2pm7_B 282 KEN 284 (297)
T ss_dssp EEC
T ss_pred EEC
Confidence 865
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=93.12 E-value=5.9 Score=37.38 Aligned_cols=231 Identities=11% Similarity=0.034 Sum_probs=114.3
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQISS 256 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~ 256 (472)
++.||++.- .. +.+.+||+.+.+-...... ....+++.. ++.||++. .+.+-+||+.+.+
T Consensus 24 ~~~l~~~d~--~~-----~~i~~~d~~~~~~~~~~~~----~~~~~i~~~~dG~l~v~~-----~~~l~~~d~~~g~--- 84 (297)
T 3g4e_A 24 SNSLLFVDI--PA-----KKVCRWDSFTKQVQRVTMD----APVSSVALRQSGGYVATI-----GTKFCALNWKEQS--- 84 (297)
T ss_dssp TTEEEEEET--TT-----TEEEEEETTTCCEEEEECS----SCEEEEEEBTTSSEEEEE-----TTEEEEEETTTTE---
T ss_pred CCEEEEEEC--CC-----CEEEEEECCCCcEEEEeCC----CceEEEEECCCCCEEEEE-----CCeEEEEECCCCc---
Confidence 467888875 22 3567888887653322111 112235544 56788852 2478899998833
Q ss_pred ccccccCCCcccccc------ccee---EEecCCeEEEEEEeCCCc-----cccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 257 EIGRQSGASSKNMAV------GKLT---WIPATGVVLGSAIAWGAF-----GYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 257 ~~~~~~~~~W~~v~~------m~~~---~~~~~g~Lyv~Gg~~g~~-----~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
.+.+.. .... ...-+|.||++....... ...+.|.++|+.... +..... ...+
T Consensus 85 ---------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~~~~-~~~p 151 (297)
T 3g4e_A 85 ---------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKYFDQ-VDIS 151 (297)
T ss_dssp ---------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEEEEE-ESBE
T ss_pred ---------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE---EEEeec-cccc
Confidence 222211 1111 112478899865433211 023578899986432 111110 0111
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcE---EeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWV---YMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR 398 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~---~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~ 398 (472)
. +.+ ....+..||+.....+.+...|+.. ++.... .+.. +.... + .-.++++ -+|.||++.
T Consensus 152 n-gi~-----~spdg~~lyv~~~~~~~i~~~~~d~-~~G~~~~~~~~~~----~~~~~-~---~p~g~~~d~~G~lwva~ 216 (297)
T 3g4e_A 152 N-GLD-----WSLDHKIFYYIDSLSYSVDAFDYDL-QTGQISNRRSVYK----LEKEE-Q---IPDGMCIDAEGKLWVAC 216 (297)
T ss_dssp E-EEE-----ECTTSCEEEEEEGGGTEEEEEEECT-TTCCEEEEEEEEE----CCGGG-C---EEEEEEEBTTSCEEEEE
T ss_pred c-ceE-----EcCCCCEEEEecCCCCcEEEEeccC-CCCcccCcEEEEE----CCCCC-C---CCCeeEECCCCCEEEEE
Confidence 1 222 2445667888876554433222210 122111 1111 11100 0 1234554 357999984
Q ss_pred --CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEeeeccc-eeEEeecCCCCcce
Q 012060 399 --GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVSREDVE-GIEVWESSNLSGVV 469 (472)
Q Consensus 399 --g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~~~-~~~vw~~~~~~~~~ 469 (472)
++.|.+|++. +.++.+. .+ .....++.++||| ++||||-.... .=|.+...+.+|+|
T Consensus 217 ~~~~~v~~~d~~--------tG~~~~~-----i~-~p~~~~t~~~f~g~d~~~L~vt~~~~~~~~~~~~~~p~~G~~ 279 (297)
T 3g4e_A 217 YNGGRVIRLDPV--------TGKRLQT-----VK-LPVDKTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQPEAGGI 279 (297)
T ss_dssp ETTTEEEEECTT--------TCCEEEE-----EE-CSSSBEEEEEEESGGGCEEEEEEBCTTCCHHHHHHCTTTTCE
T ss_pred cCCCEEEEEcCC--------CceEEEE-----EE-CCCCCceEEEEeCCCCCEEEEEcCCcCCChhHccCCCCCceE
Confidence 5679999874 1112122 11 1234799999997 59999976432 11233445667765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=93.10 E-value=5.6 Score=37.04 Aligned_cols=113 Identities=7% Similarity=-0.085 Sum_probs=56.7
Q ss_pred eeeeecCCCCccccCCCCcCc--ccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc
Q 012060 197 LSSSRHVASAHWTDPSDPRIY--RATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG 272 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~--R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m 272 (472)
++..+|+.+.+-...-.+... +.. +++.. ++ .||+.... ...|.+||+.+.+++..+.....+. ....+.
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~ 85 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPM--VPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPEE-RVKSLF 85 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCC--CEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTTE-EEECTT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCcc--ceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCccc-cccccc
Confidence 456677666543322111110 111 24443 34 68884322 3578999999866544333210000 000233
Q ss_pred ceeEEecCCeEEEEEEeC--CCccc---cceEEEEcCCCCeeeeEEcC
Q 012060 273 KLTWIPATGVVLGSAIAW--GAFGY---SGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 273 ~~~~~~~~g~Lyv~Gg~~--g~~~~---~~sve~yDp~~~~~vW~~~~ 315 (472)
...+.+-+..||++.... ++..+ .+.|..||+.++++++....
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 344444455788764210 11101 36899999999997777654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=92.91 E-value=7 Score=37.67 Aligned_cols=192 Identities=11% Similarity=0.138 Sum_probs=92.7
Q ss_pred ceeeccCCcEEEeee--CceEEeeccc-CCCCCcc--ccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 134 FTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVR--THLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 134 ~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R--~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
+...|....++++++ |.|..||... ....... .+-+.+.++++. ++.+++.|+ .+| .+..||....
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~-----~i~iwd~~~~ 151 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS--IRG-----ATTLRDFSGS 151 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE--TTT-----EEEEEETTSC
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe--CCC-----EEEEEECCCC
Confidence 333444214553433 4588888443 2221111 123344455554 346777776 454 4556666655
Q ss_pred ccccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEE
Q 012060 207 HWTDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVL 284 (472)
Q Consensus 207 ~W~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Ly 284 (472)
..............+.+++... +.+++ |+.+ ..|..||... +++..+.. +......+.+.+....++
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~-~~~~~~~~------h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST----GRLLLLGLDG-HEIFKEKL------HKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT----SEEEEEETTS-CEEEEEEC------SSSCEEEEEECSSCTTEE
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC----CCEEEEECCC-CEEEEecc------CCCcEEEEEECCCCCCEE
Confidence 4443332221112222344443 44444 6544 4788999843 32222211 011113344444444366
Q ss_pred EEEEeCCCccccceEEEEcCCC----CeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 285 GSAIAWGAFGYSGYVRMWDPRS----GEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 285 v~Gg~~g~~~~~~sve~yDp~~----~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
++|+. .+.|..||.++ ++++-.. .. ...+..++....++.++++|+.++.+..-|+++-
T Consensus 221 ~s~~~------d~~i~iwd~~~~~~~~~~~~~~-~~--------~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 221 ATSSV------DATVKLWDLRNIKDKNSYIAEM-PH--------EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp EEEET------TSEEEEEEGGGCCSTTCEEEEE-EC--------SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred EEEeC------CCEEEEEeCCCCCcccceEEEe-cC--------CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 77663 34799999998 5533333 11 1111112223326677888888877655455543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=4.6 Score=43.70 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=83.9
Q ss_pred CCcEEEeee-CceEEee-------ccc-CCCCCccc-cc--c-ccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCC
Q 012060 140 DGSLWIAHG-GQISVYD-------WNL-SHSVTVRT-HL--D-NITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASA 206 (472)
Q Consensus 140 ~g~l~va~G-G~Ve~YD-------W~~-~~m~~~R~-~~--~-~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~ 206 (472)
++.||+... |.|.++| |+. ...+.... .. . +..++++.++.||+... +| .+-++|..+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg-----~l~alD~~tG 137 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DG-----RLIALDAKTG 137 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TS-----EEEEEETTTC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CC-----EEEEEECCCC
Confidence 467775433 4588888 887 33322110 00 0 00123456788887653 33 3455665433
Q ss_pred --ccccCCCCc--CcccceeEEEEeCCeEEEEecCC--CCCceeEEEeCCCcccccccccccCCCccccc----cc----
Q 012060 207 --HWTDPSDPR--IYRATVTAIADSPTTVFSSLVCP--HKENSVLLIDKSTLQISSEIGRQSGASSKNMA----VG---- 272 (472)
Q Consensus 207 --~W~~~a~m~--~~R~~~~ava~l~g~IYAGg~~~--~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~----~m---- 272 (472)
.|.....-. ...... +-.+.++.||+|..+. .....|-.||+.|.+. .|+.-. |.
T Consensus 138 ~~~W~~~~~~~~~~~~~~~-~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~~~~~~~p~~~~~ 206 (668)
T 1kv9_A 138 KAIWSQQTTDPAKPYSITG-APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL----------AWRFYTVPGDPALPYE 206 (668)
T ss_dssp CEEEEEECSCTTSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE----------EEEEESSCCCTTSCCS
T ss_pred CEeeeeccCCCCCcceecC-CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE----------EEEecccCCCCCcccc
Confidence 366532110 111111 2445689999943221 2245799999999442 243311 00
Q ss_pred ---------------------------ceeEEecCCeEEEEEEeCC------------CccccceEEEEcCCCCeeeeEE
Q 012060 273 ---------------------------KLTWIPATGVVLGSAIAWG------------AFGYSGYVRMWDPRSGEVVWET 313 (472)
Q Consensus 273 ---------------------------~~~~~~~~g~Lyv~Gg~~g------------~~~~~~sve~yDp~~~~~vW~~ 313 (472)
....-+..+++|+..+.+. ..-+.++|-.+|++|++++|+.
T Consensus 207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~ 286 (668)
T 1kv9_A 207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY 286 (668)
T ss_dssp SHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred ccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence 0011124689998654321 1113468999999999999998
Q ss_pred cCC
Q 012060 314 NEP 316 (472)
Q Consensus 314 ~~~ 316 (472)
...
T Consensus 287 ~~~ 289 (668)
T 1kv9_A 287 QVT 289 (668)
T ss_dssp ESS
T ss_pred ecC
Confidence 754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=92.60 E-value=6.8 Score=36.70 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=88.2
Q ss_pred cceeeccCCcEEEeee--CceEEeeccc-C---CCCCccccccccceeeee-CCe-EEEEcCcCCCCceecceeeeecC-
Q 012060 133 TFTASSDDGSLWIAHG--GQISVYDWNL-S---HSVTVRTHLDNITSIRHV-WSD-VAAVGSDYSSGIHFYDLSSSRHV- 203 (472)
Q Consensus 133 a~r~~~~~g~l~va~G--G~Ve~YDW~~-~---~m~~~R~~~~~v~~v~~l-~~~-lYavGG~~~~g~~~l~sve~ydp- 203 (472)
++...|. +.++++.+ |.|..||... . .......+-..+.++++. ++. .+++|+ .+| .+..||.
T Consensus 16 ~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg-----~i~~wd~~ 87 (342)
T 1yfq_A 16 DIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT--VQG-----EILKVDLI 87 (342)
T ss_dssp EEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE--TTS-----CEEEECSS
T ss_pred EEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc--CCC-----eEEEEEec
Confidence 3444454 44443433 3477777433 2 011111222334445544 566 677777 454 4566776
Q ss_pred CCCccccCCCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCC---------cccccccccccCCCcccccccc
Q 012060 204 ASAHWTDPSDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKST---------LQISSEIGRQSGASSKNMAVGK 273 (472)
Q Consensus 204 ~t~~W~~~a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t---------~~~~~~~~~~~~~~W~~v~~m~ 273 (472)
.+.+-..+.... ....+.+++.. ++.|++++.+ ..|-.||..+ .+++..+.. . .....
T Consensus 88 ~~~~~~~~~~~~-~~~~v~~l~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~----~~v~~ 155 (342)
T 1yfq_A 88 GSPSFQALTNNE-ANLGICRICKYGDDKLIAASWD----GLIEVIDPRNYGDGVIAVKNLNSNNTKV---K----NKIFT 155 (342)
T ss_dssp SSSSEEECBSCC-CCSCEEEEEEETTTEEEEEETT----SEEEEECHHHHTTBCEEEEESCSSSSSS---C----CCEEE
T ss_pred cCCceEeccccC-CCCceEEEEeCCCCEEEEEcCC----CeEEEEcccccccccccccCCeeeEEee---C----CceEE
Confidence 655543333210 12223235555 4445556544 4788999887 554443332 0 01111
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCC-CeeeeEEcCCCCCCCCcccccccceeeeec--CCeEEEEcccCCCc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS-GEVVWETNEPGSGRSARFGDSFADVDVDVD--ELTLFKICSKSGDI 350 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~-~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~--~~~iy~vGg~~g~~ 350 (472)
+.+. .+. +++|+. .+.|..||.++ .......... .....-.+ ++.. ++.++++|+.++..
T Consensus 156 ~~~~--~~~-l~~~~~------d~~i~i~d~~~~~~~~~~~~~~---~~~~~i~~-----i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 156 MDTN--SSR-LIVGMN------NSQVQWFRLPLCEDDNGTIEES---GLKYQIRD-----VALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp EEEC--SSE-EEEEES------TTEEEEEESSCCTTCCCEEEEC---SCSSCEEE-----EEECSGGGCEEEEEETTSEE
T ss_pred EEec--CCc-EEEEeC------CCeEEEEECCccccccceeeec---CCCCceeE-----EEECCCCCCEEEEEecCCcE
Confidence 2222 223 445542 35799999998 5422222221 00111112 1222 56788889888765
Q ss_pred cccccc
Q 012060 351 AMADLR 356 (472)
Q Consensus 351 ~~~dl~ 356 (472)
..-|++
T Consensus 219 ~i~~~~ 224 (342)
T 1yfq_A 219 AVEFFD 224 (342)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 543333
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.58 E-value=6.8 Score=41.78 Aligned_cols=190 Identities=13% Similarity=0.155 Sum_probs=94.3
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.. ++.+.+ |+.+ .+|-.||..+.+.+..+.. +...-..+.+. -++...++|+.+ ++|.+
T Consensus 436 v~~s~~g~~l~sgs~D----g~v~vwd~~~~~~~~~~~~------h~~~v~~~~~s-~~~~~l~s~s~D------~~i~i 498 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWD----GELRLWDLAAGVSTRRFVG------HTKDVLSVAFS-LDNRQIVSASRD------RTIKL 498 (694)
T ss_dssp EEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEEC------CSSCEEEEEEC-TTSSCEEEEETT------SCEEE
T ss_pred EEECCCCCEEEEEeCC----CcEEEEECCCCcceeEEeC------CCCCEEEEEEe-CCCCEEEEEeCC------CEEEE
Confidence 4444 345555 6544 4788999988543222211 00011122233 345555666643 46999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecC-CeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDE-LTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNN 380 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~-~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~ 380 (472)
||.+... .+....... .....-.+ ++....+ ..+++.|+.++....-|+++. ..... +.....
T Consensus 499 wd~~~~~-~~~~~~~~~-~h~~~v~~---~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-----~~~~~----~~~h~~-- 562 (694)
T 3dm0_A 499 WNTLGEC-KYTISEGGE-GHRDWVSC---VRFSPNTLQPTIVSASWDKTVKVWNLSNC-----KLRST----LAGHTG-- 562 (694)
T ss_dssp ECTTSCE-EEEECSSTT-SCSSCEEE---EEECSCSSSCEEEEEETTSCEEEEETTTC-----CEEEE----ECCCSS--
T ss_pred EECCCCc-ceeeccCCC-CCCCcEEE---EEEeCCCCcceEEEEeCCCeEEEEECCCC-----cEEEE----EcCCCC--
Confidence 9987664 344443311 11111111 1112211 246778888876544344321 12221 111111
Q ss_pred CCcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeecccee
Q 012060 381 NGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGI 457 (472)
Q Consensus 381 ~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~ 457 (472)
.=..++. -+|+++++++ +.|-+|+-... +.+ +. + .....|..+.+--|+.+++-....+|
T Consensus 563 --~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-------~~~-~~-~------~~~~~v~~~~~sp~~~~l~~~~~~~i 625 (694)
T 3dm0_A 563 --YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-------KKL-YS-L------EANSVIHALCFSPNRYWLCAATEHGI 625 (694)
T ss_dssp --CEEEEEECTTSSEEEEEETTSBCEEEETTTT-------EEE-EC-C------BCSSCEEEEEECSSSSEEEEEETTEE
T ss_pred --CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------ceE-EE-e------cCCCcEEEEEEcCCCcEEEEEcCCCE
Confidence 1112222 2466666654 78999985321 111 11 0 12346888888877777776777889
Q ss_pred EEeecC
Q 012060 458 EVWESS 463 (472)
Q Consensus 458 ~vw~~~ 463 (472)
.||+..
T Consensus 626 ~iwd~~ 631 (694)
T 3dm0_A 626 KIWDLE 631 (694)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=8.3 Score=36.85 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++.++++|+.+ ++|.+||.++++++....... . ..+..++.. -++.+++.|+.++....-|+++
T Consensus 138 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~-----~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 138 NTEYFIWADNR------GTIGFQSYEDDSQYIVHSAKS--D-----VEYSSGVLH-KDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp -CCEEEEEETT------CCEEEEESSSSCEEEEECCCS--S-----CCCCEEEEC-TTSCEEEEECTTSCEEEEESSC
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEEecCC--C-----CceEEEEEC-CCCCEEEEEcCCCEEEEEECCC
Confidence 56777777744 469999999998644433221 1 112122223 3788899999988765445543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=4.8 Score=43.19 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=28.3
Q ss_pred cCCeEEEEEEeCCC---------ccccceEEEEcCCCCeeeeEEcCC
Q 012060 279 ATGVVLGSAIAWGA---------FGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~---------~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..++||+..+...+ .-+.++|-++|++|++++|+....
T Consensus 251 ~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 251 GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 67899997664321 113468999999999999998754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=91.79 E-value=11 Score=37.40 Aligned_cols=121 Identities=9% Similarity=-0.139 Sum_probs=67.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe--CCeEEEEe--cC----CCCCceeEEEeCC
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS--PTTVFSSL--VC----PHKENSVLLIDKS 250 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l--~g~IYAGg--~~----~~~l~sVE~YDp~ 250 (472)
..+|+.-+..++. ..++..||+.+.+-. ..++.-... + ++.. +.+||+.. +. +...++|-+||+.
T Consensus 33 ~~~yv~~~~~~~~---~~~v~v~D~~t~~~~--~~i~~g~~p-~-i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 33 RRSYINLPAHHSA---IIQQWVLDAGSGSIL--GHVNGGFLP-N-PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CEEEEeCCcccCC---ccEEEEEECCCCeEE--EEecCCCCC-C-eEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4577765310211 117888998877633 222222222 2 4444 34699932 11 1235789999999
Q ss_pred Ccccccccccc-cCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeE
Q 012060 251 TLQISSEIGRQ-SGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWE 312 (472)
Q Consensus 251 t~~~~~~~~~~-~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~ 312 (472)
|++++.+|.-. ......-..|-...+.+-+..||++.-. ..++|-.+| .+++++-+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCEEeE
Confidence 98877665321 0000111123344555667888887321 135788999 99987766
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=91.77 E-value=5.6 Score=37.30 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=33.2
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCC
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
++.++++|+.+ +.|..||.++++.+.+.... ....-.+ + + -++.+++.|+.||.
T Consensus 262 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~----h~~~v~~---~--~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 262 RHKFLYTAGSD------GIISCWNLQTRKKIKNFAKF----NEDSVVK---I--A-CSDNILCLATSDDT 315 (342)
T ss_dssp TTCCEEEEETT------SCEEEEETTTTEEEEECCCC----SSSEEEE---E--E-ECSSEEEEEEECTH
T ss_pred CCCEEEEecCC------ceEEEEcCccHhHhhhhhcc----cCCCceE---e--c-CCCCeEEEEecCCc
Confidence 45555666533 46999999999966654422 0111122 2 3 67888889988864
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=91.74 E-value=7.1 Score=41.57 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=27.4
Q ss_pred cCCeEEEEEEeCC-----------------CccccceEEEEcCCCCeeeeEEcCC
Q 012060 279 ATGVVLGSAIAWG-----------------AFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g-----------------~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
..++||+..+... ..-+.++|-.+|++|++++|+....
T Consensus 256 ~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~ 310 (582)
T 1flg_A 256 ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT 310 (582)
T ss_dssp TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS
T ss_pred CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC
Confidence 4689999766311 1113468999999999999998643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=91.56 E-value=9.9 Score=36.36 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
++.+.++|+. .++|.+||.++++.+-+.... ...+.+++... ++...+.|+.++....-|+
T Consensus 87 ~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~h--------~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 87 ENCFAISSSW------DKTLRLWDLRTGTTYKRFVGH--------QSEVYSVAFSP-DNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp STTEEEEEET------TSEEEEEETTSSCEEEEEECC--------CSCEEEEEECS-STTEEEEEETTSCEEEEES
T ss_pred CCCEEEEEcC------CCcEEEEECCCCcEEEEEcCC--------CCcEEEEEECC-CCCEEEEEcCCCEEEEEec
Confidence 5666667663 357999999999866666544 12222223333 5566678888876554343
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=91.31 E-value=10 Score=35.99 Aligned_cols=185 Identities=12% Similarity=0.130 Sum_probs=88.5
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.. ++...+ |+.+ .+|-.||..+.+++..+... -. +...+.+. -++.++++|+.+ ++|..
T Consensus 71 ~~~s~dg~~l~s~s~D----~~v~~wd~~~~~~~~~~~~h----~~--~v~~~~~~-~~~~~l~s~s~D------~~i~v 133 (319)
T 3frx_A 71 CTLTADGAYALSASWD----KTLRLWDVATGETYQRFVGH----KS--DVMSVDID-KKASMIISGSRD------KTIKV 133 (319)
T ss_dssp EEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEECC----SS--CEEEEEEC-TTSCEEEEEETT------SCEEE
T ss_pred EEECCCCCEEEEEeCC----CEEEEEECCCCCeeEEEccC----CC--cEEEEEEc-CCCCEEEEEeCC------CeEEE
Confidence 4443 344444 6544 47899999996543332210 00 11222222 356666777644 46999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeee-----cCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccC
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV-----DELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISS 376 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~-----~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~ 376 (472)
||.+... +-+..... ..+..+.... .++.+++.|+.++....-|++. ...... +...
T Consensus 134 wd~~~~~-~~~~~~h~--------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~----~~~h 195 (319)
T 3frx_A 134 WTIKGQC-LATLLGHN--------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-----FQIEAD----FIGH 195 (319)
T ss_dssp EETTSCE-EEEECCCS--------SCEEEEEECCC------CCEEEEEETTSCEEEEETTT-----TEEEEE----ECCC
T ss_pred EECCCCe-EEEEeccC--------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-----chhhee----ecCC
Confidence 9997654 33333220 1111111111 1345677888887654333332 222222 1111
Q ss_pred CCCCCCcCeEEEE-ECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec
Q 012060 377 SGNNNGENKLIHC-YKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 377 ~~~~~~~~~~~~~-~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~ 453 (472)
.. .-..++. -+|+++++++ +.|.+|+-... +..+. + .....|..++|--|.-+++=-.
T Consensus 196 ~~----~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--------~~~~~-~------~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 196 NS----NINTLTASPDGTLIASAGKDGEIMLWNLAAK--------KAMYT-L------SAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp CS----CEEEEEECTTSSEEEEEETTCEEEEEETTTT--------EEEEE-E------ECCSCEEEEEECSSSSEEEEEE
T ss_pred CC----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEE-e------cCCCcEEEEEEcCCCCEEEEEc
Confidence 11 0112222 2466666654 78999986421 11111 1 1123577777765544444444
Q ss_pred cceeEEeec
Q 012060 454 VEGIEVWES 462 (472)
Q Consensus 454 ~~~~~vw~~ 462 (472)
..++.||.-
T Consensus 257 ~~~i~v~~~ 265 (319)
T 3frx_A 257 ATGIKVFSL 265 (319)
T ss_dssp TTEEEEEEE
T ss_pred CCCcEEEEe
Confidence 567888863
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=91.19 E-value=16 Score=38.23 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=87.4
Q ss_pred cceeeccCCcEEEeeeCceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcccc
Q 012060 133 TFTASSDDGSLWIAHGGQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 133 a~r~~~~~g~l~va~GG~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~ 210 (472)
++...|+...+..+.++.|..+|... .......-+-..+.++++ -++.+.|.|+ .+| ++..+|..+.+...
T Consensus 23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~--~d~-----~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD--VHG-----NVRIWDTTQTTHIL 95 (611)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEESSSTTCCE
T ss_pred EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEe--CCC-----CEEEeECCCCccee
Confidence 34444552333333334465555432 222222223333444443 3577788887 454 45556654332211
Q ss_pred CCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEE
Q 012060 211 PSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAI 288 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg 288 (472)
...+......+.+++... +. |.+++.+......|-.||..+ +..++.. +.-....+.+.+-...++++|+
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~~l~g------h~~~v~~v~f~p~~~~~l~s~s 167 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTG------QARAMNSVDFKPSRPFRIISGS 167 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCC------CSSCEEEEEECSSSSCEEEEEE
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--CcceecC------CCCCceEEEECCCCCeEEEEEe
Confidence 111111112232355543 44 444554433344677777433 1111110 0011123334444445677777
Q ss_pred eCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 289 AWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 289 ~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
.+ ++|.+||.++.++.-+.... ...+-.++... ++.+++.|+.|+...
T Consensus 168 ~D------~~v~lwd~~~~~~~~~l~~H--------~~~V~~v~fsp-dg~~las~s~D~~i~ 215 (611)
T 1nr0_A 168 DD------NTVAIFEGPPFKFKSTFGEH--------TKFVHSVRYNP-DGSLFASTGGDGTIV 215 (611)
T ss_dssp TT------SCEEEEETTTBEEEEEECCC--------SSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred CC------CeEEEEECCCCeEeeeeccc--------cCceEEEEECC-CCCEEEEEECCCcEE
Confidence 44 46999999888744444332 11122222233 678888999887654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.77 E-value=19 Score=38.23 Aligned_cols=155 Identities=17% Similarity=0.063 Sum_probs=73.6
Q ss_pred cceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCe-EEEEecCCCCCceeEEE
Q 012060 171 ITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTT-VFSSLVCPHKENSVLLI 247 (472)
Q Consensus 171 v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~-IYAGg~~~~~l~sVE~Y 247 (472)
+.++++. ++.+.+.|+ .+| ++..||..+.+-. ..+......+.+++.. ++. |..|+.+ .+|-.|
T Consensus 433 v~~v~~s~~g~~l~sgs--~Dg-----~v~vwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D----~~i~iw 499 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGS--WDG-----ELRLWDLAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRD----RTIKLW 499 (694)
T ss_dssp EEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETT----SCEEEE
T ss_pred EEEEEECCCCCEEEEEe--CCC-----cEEEEECCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCC----CEEEEE
Confidence 4344432 567777777 455 4556665544311 1111112222235544 344 4446544 467888
Q ss_pred eCCCcccccccccccCCCcccccccceeEEecC-CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccc
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIPAT-GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGD 326 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~-g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~ 326 (472)
|........ +... ..-+.-....+.+.+.. ..++++|+.+ ++|.+||.++++++-+..... .
T Consensus 500 d~~~~~~~~-~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~h~--------~ 562 (694)
T 3dm0_A 500 NTLGECKYT-ISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLAGHT--------G 562 (694)
T ss_dssp CTTSCEEEE-ECSS--TTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEECCCS--------S
T ss_pred ECCCCccee-eccC--CCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEcCCC--------C
Confidence 876522100 0000 00000001112222221 2455666643 469999999998665554331 1
Q ss_pred cccceeeeecCCeEEEEcccCCCccccccc
Q 012060 327 SFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 327 ~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
.+..++... ++.+++.|+.++....-|++
T Consensus 563 ~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 563 YVSTVAVSP-DGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp CEEEEEECT-TSSEEEEEETTSBCEEEETT
T ss_pred CEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Confidence 121222233 67888899988875543443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.73 E-value=1.3 Score=48.36 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=67.5
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcC-----cc---cceeEEEEeCCeEEEEecCCCCCcee
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRI-----YR---ATVTAIADSPTTVFSSLVCPHKENSV 244 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~-----~R---~~~~ava~l~g~IYAGg~~~~~l~sV 244 (472)
++.++.||+... .. .+-++|..+ ..|+.-..... .. ... ++++.++.||++..+ ..+
T Consensus 67 ~v~~g~vyv~~~--~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~v~v~~~d----g~l 133 (689)
T 1yiq_A 67 IVVDGVMYTTGP--FS------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR-GVAVWKGKVYVGVLD----GRL 133 (689)
T ss_dssp EEETTEEEEECG--GG------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEETTEEEEECTT----SEE
T ss_pred EEECCEEEEEcC--CC------eEEEEECCCCceeEEEcCCCCccccccccccCCCC-ccEEECCEEEEEccC----CEE
Confidence 457899998765 22 344455432 33654322210 00 112 256789999996433 367
Q ss_pred EEEeCCCcccccccccccCCCcccccc--------cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 245 LLIDKSTLQISSEIGRQSGASSKNMAV--------GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~W~~v~~--------m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
-++|.+| |+ ..|+.-.. ..-.-...++++|+..+. +..+..+.|..||++|++.+|+...
T Consensus 134 ~AlDa~T-------G~---~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 134 EAIDAKT-------GQ---RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG-AEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp EEEETTT-------CC---EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEECCC-------CC---EeeeecCcCCCCCCccccCCcEEECCEEEEEeCC-CccCCCCEEEEEECCCCcEEEEecc
Confidence 8999999 44 23554321 000112358899884321 1112357899999999999999863
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=1.2 Score=48.29 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=67.4
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcCc--------ccceeEEEEeCCeEEEEecCCCCCce
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRIY--------RATVTAIADSPTTVFSSLVCPHKENS 243 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~~--------R~~~~ava~l~g~IYAGg~~~~~l~s 243 (472)
.++.++.||+... . ..+.++|..+ ..|+.-...... -..- ++++.++.||++..+ ..
T Consensus 62 P~v~~g~vyv~~~--~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~d----g~ 128 (668)
T 1kv9_A 62 PLFHDGVIYTSMS--W------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALWGDKVYVGTLD----GR 128 (668)
T ss_dssp CEEETTEEEEEEG--G------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEEBTEEEEECTT----SE
T ss_pred CEEECCEEEEECC--C------CeEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEECCEEEEEcCC----CE
Confidence 3457889998765 2 2344444432 235543221100 0012 256678999996433 36
Q ss_pred eEEEeCCCcccccccccccCCCccccccc-------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVG-------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m-------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
+-++|+.| |+ -.|+.-... .-.-...+++||+... ++..+..+.|..||++|++++|+...
T Consensus 129 l~alD~~t-------G~---~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~-~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 129 LIALDAKT-------GK---AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNG-GAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEEETTT-------CC---EEEEEECSCTTSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEECCC-------CC---EeeeeccCCCCCcceecCCCEEECCEEEEeCC-CCCcCCCCEEEEEECCCCcEEEEecc
Confidence 88999999 44 335543210 0001235889988433 11112357899999999999999864
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=1.5 Score=46.71 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=70.5
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecC-C--CCccccCCCCcCc--------ccceeEEEEeCCeEEEEecCCCCCc
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHV-A--SAHWTDPSDPRIY--------RATVTAIADSPTTVFSSLVCPHKEN 242 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp-~--t~~W~~~a~m~~~--------R~~~~ava~l~g~IYAGg~~~~~l~ 242 (472)
.++.++.||+... +++ .+.++|+ . +..|+.-...... ....+ +++.++.||++..+ .
T Consensus 58 P~v~~g~vyv~~~--~~~-----~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~d----g 125 (571)
T 2ad6_A 58 PLVIGDMMYVHSA--FPN-----NTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRG-LAYGAGQIVKKQAN----G 125 (571)
T ss_dssp CEEETTEEEEECS--TTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCC-CEEETTEEEEECTT----S
T ss_pred cEEECCEEEEEeC--CCC-----EEEEEeCCCCccEEEEEcCCCCccccccccccccccc-cEEECCEEEEEeCC----C
Confidence 3457999998765 222 4556665 3 3347654332110 01122 66789999996332 3
Q ss_pred eeEEEeCCCcccccccccccCCCccccccc-------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 243 SVLLIDKSTLQISSEIGRQSGASSKNMAVG-------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m-------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.+-++|+.| |+ ..|+.-... ...-...+++||+.... +..+..+.|..||+++++.+|+...
T Consensus 126 ~l~alD~~t-------G~---~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 126 HLLALDAKT-------GK---INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSG-AELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEETTT-------CC---EEEEEECCCGGGTCBCCSCCEEETTEEEEECBC-GGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCC-------CC---EEEEecCCCCCccceeccCCEEECCEEEEEecC-CccCCCCEEEEEECCCCcEEEEEcc
Confidence 678899999 44 336543211 00112258899885431 1111246899999999999999875
Q ss_pred C
Q 012060 316 P 316 (472)
Q Consensus 316 ~ 316 (472)
.
T Consensus 195 ~ 195 (571)
T 2ad6_A 195 T 195 (571)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=90.11 E-value=14 Score=35.68 Aligned_cols=60 Identities=12% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTL 252 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~ 252 (472)
.+.+.++|+ .++ ++..+|..+.+-.. .+.. ...+.+++...+.++++. .++|..||..+.
T Consensus 70 ~~~~~~~~~--~d~-----~v~iWd~~~~~~~~--~~~~-~~~v~~v~~~~~~~~~~~-----~~~i~i~d~~~~ 129 (355)
T 3vu4_A 70 TNYVAFVTG--VKE-----VVHIWDDVKKQDVS--RIKV-DAPVKDLFLSREFIVVSY-----GDVISVFKFGNP 129 (355)
T ss_dssp SSEEEEECS--STT-----EEEEEETTTTEEEE--EEEC-SSCEEEEEECSSEEEEEE-----TTEEEEEESSTT
T ss_pred CCEEEEEEC--Ccc-----EEEEEECCCCcEEE--EEEC-CCceEEEEEcCCEEEEEE-----cCEEEEEECCCC
Confidence 455667777 333 67777877664322 1111 122334666666666642 347899999884
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=89.30 E-value=12 Score=36.36 Aligned_cols=193 Identities=11% Similarity=-0.009 Sum_probs=88.8
Q ss_pred ceeeccCCcEEEeeeC---ceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCcc
Q 012060 134 FTASSDDGSLWIAHGG---QISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHW 208 (472)
Q Consensus 134 ~r~~~~~g~l~va~GG---~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W 208 (472)
++..|+...+.+|.|+ .|..+|... ....... +.+.+.++++ -++.+++.|+ .++ +..++..+.+-
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s--~~~------~~~~~~~~~~~ 209 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT--GSS------LEVISTVTGSC 209 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC--SSC------EEEEETTTCCE
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc--cee------EEEEEeccCcc
Confidence 3344553344445553 377777332 2111111 2233445554 3567777776 333 23344333332
Q ss_pred ccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEE
Q 012060 209 TDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGS 286 (472)
Q Consensus 209 ~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~ 286 (472)
............+.+++.. ++..++ +..++.....+-.||..+.+......+.....-..+ ..+.+. -+|.++|+
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V--~~~~~S-pdg~~las 286 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI--TSMDVD-MKGELAVL 286 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE--EEEEEC-TTSCEEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe--EeEEEC-CCCCceEE
Confidence 2111111122233335544 455555 544443334566677655220000000000000001 111222 47788888
Q ss_pred EEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 287 AIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 287 Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
|+.+ ++|.+||.++++++-+...-- ...+.+|+-.- ++++.+-|+.|+....
T Consensus 287 gs~D------~~V~iwd~~~~~~~~~~~~gH-------~~~V~~v~fSp-dg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 287 ASND------NSIALVKLKDLSMSKIFKQAH-------SFAITEVTISP-DSTYVASVSAANTIHI 338 (365)
T ss_dssp EETT------SCEEEEETTTTEEEEEETTSS-------SSCEEEEEECT-TSCEEEEEETTSEEEE
T ss_pred EcCC------CEEEEEECCCCcEEEEecCcc-------cCCEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 8744 469999999999766654220 11222233344 6778888998876543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=89.04 E-value=14 Score=36.32 Aligned_cols=69 Identities=10% Similarity=-0.067 Sum_probs=41.2
Q ss_pred CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCC
Q 012060 228 PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRS 306 (472)
Q Consensus 228 ~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~ 306 (472)
++.+.| |+.+ ++|-.||..+.+++..+-.. . -+.+...|.+.+..++++|+. .++|.+||.++
T Consensus 155 d~~~las~s~D----~tv~~Wd~~~~~~~~~~~~~--~----~~v~~v~~~p~~~~~l~~~~~------d~~v~~wd~~t 218 (393)
T 4gq1_A 155 AEQVIASVGDD----CTLIIWRLTDEGPILAGYPL--S----SPGISVQFRPSNPNQLIVGER------NGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEEEETT----SEEEEEEEETTEEEEEEEEC--S----SCEEEEEEETTEEEEEEEEET------TSEEEEEETTC
T ss_pred CCCEEEEEECC----CeEEEEECCCCceeeeecCC--C----CCcEEEEECCCCCceEEecCC------CCEEEEEECCC
Confidence 678888 6554 58889998774432221110 1 122456677666667777763 34799999999
Q ss_pred CeeeeE
Q 012060 307 GEVVWE 312 (472)
Q Consensus 307 ~~~vW~ 312 (472)
++...+
T Consensus 219 ~~~~~~ 224 (393)
T 4gq1_A 219 NLSAEE 224 (393)
T ss_dssp CC----
T ss_pred Cccccc
Confidence 874433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=88.63 E-value=5.3 Score=41.04 Aligned_cols=126 Identities=8% Similarity=-0.103 Sum_probs=73.0
Q ss_pred CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC--CeEEEE--ecC----CCCCceeEEEeCC
Q 012060 179 SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP--TTVFSS--LVC----PHKENSVLLIDKS 250 (472)
Q Consensus 179 ~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~--g~IYAG--g~~----~~~l~sVE~YDp~ 250 (472)
..+|+.-. ...... +++..+|+.+++-.. ..+..+.- + ++... .+||++ +.. +...++|.+||+.
T Consensus 85 ~~vyV~n~--~~~~~~-~~VsVID~~t~~vv~--~I~vG~~P-g-ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 85 RRVYIQDP--AHFAAI-TQQFVIDGSTGRILG--MTDGGFLP-H-PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp TEEEEEEC--TTTCSS-EEEEEEETTTTEEEE--EEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CEEEEECC--CcCCCC-CeEEEEECCCCEEEE--EEECCCCC-c-eEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 45777754 111111 788999998876432 22222222 3 55443 359993 211 1135789999999
Q ss_pred CcccccccccccCCCcc-cccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 251 TLQISSEIGRQSGASSK-NMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 251 t~~~~~~~~~~~~~~W~-~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
|++++.+|.-.....+. -..|-.....+-+..|||+.. . ..++|-.+|+.+++++-+..-+
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~--~---~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF--S---PAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC--S---SSCEEEEEETTTTEEEEEEECC
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec--C---CCCeEEEEECCCCeEEEEEEcC
Confidence 99887766321000010 012334444556678999742 1 1458999999999988776654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=88.37 E-value=4.6 Score=37.91 Aligned_cols=129 Identities=9% Similarity=0.152 Sum_probs=69.3
Q ss_pred eCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccccc---ceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 227 SPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG---KLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 227 l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m---~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
-++.||+|. .+ +-+||+ +.+ ..|+.-.+. ..... .++.||++.. .+.+.+||
T Consensus 69 ~~g~l~v~t-----~~-l~~~d~-~g~----------~~~~~~~~~~~~~~~~~-~~~~l~v~t~-------~~~l~~~d 123 (330)
T 3hxj_A 69 KDGTIYFGS-----DK-VYAINP-DGT----------EKWRFDTKKAIVSDFTI-FEDILYVTSM-------DGHLYAIN 123 (330)
T ss_dssp TTTEECCSS-----CE-EEEECC-CGG----------GGGGSCC-----CCEEE-ETTEEEEECT-------TSEEEEEC
T ss_pred cCCcEEEec-----Cc-EEEECC-CCc----------EEEEEECCCCcccCceE-ECCEEEEEec-------CCEEEEEc
Confidence 377899842 12 889998 422 225543221 11112 3888888531 34799999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCc
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGE 383 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~ 383 (472)
+. ++..|+...+.. ...++ +...++.||+ |..++.+...|.. +.-.|..-.+ ...
T Consensus 124 ~~-g~~~~~~~~~~~-----~~~~~----~~~~~g~l~v-gt~~~~l~~~d~~--g~~~~~~~~~------~~~------ 178 (330)
T 3hxj_A 124 TD-GTEKWRFKTKKA-----IYATP----IVSEDGTIYV-GSNDNYLYAINPD--GTEKWRFKTN------DAI------ 178 (330)
T ss_dssp TT-SCEEEEEECSSC-----CCSCC----EECTTSCEEE-ECTTSEEEEECTT--SCEEEEEECS------SCC------
T ss_pred CC-CCEEEEEcCCCc-----eeeee----EEcCCCEEEE-EcCCCEEEEECCC--CCEeEEEecC------CCc------
Confidence 99 888899876521 11121 1222777885 4444433332322 2333544322 111
Q ss_pred CeEEEE-ECCEEEEecCCeEEEee
Q 012060 384 NKLIHC-YKNQVFVGRGGSLEVWS 406 (472)
Q Consensus 384 ~~~~~~-~~g~l~~~~g~~~~v~~ 406 (472)
-..++. .+|.||+.. +.|-.|+
T Consensus 179 ~~~~~~d~~g~l~v~t-~~l~~~d 201 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS-DKVYAIN 201 (330)
T ss_dssp CSCCEECTTCCEEEES-SSEEEEC
T ss_pred eeeeEEcCCCEEEEEe-CEEEEEC
Confidence 112233 478888888 8888887
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=87.48 E-value=32 Score=36.40 Aligned_cols=155 Identities=14% Similarity=0.232 Sum_probs=80.5
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc-CCCcccccccccC--CCCcEEeecCCCC
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK-SGDIAMADLRNLG--EDPWVYMEDKNPS 372 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~-~g~~~~~dl~s~e--~d~W~~~~~~~~~ 372 (472)
.+.|..+|..++++++...--..+..+..|..| ..-.++.+|+.+-. ++.....|..... ...|..+..
T Consensus 363 sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~----~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~---- 434 (567)
T 1qks_A 363 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF----VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS---- 434 (567)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE----EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE----
T ss_pred CCeEEEEECCCCcEEEEEeccCcCCCCccceee----ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE----
Confidence 568999999999988776430212222223322 22335778877632 2332222222211 223988876
Q ss_pred cccCCCCCCCcCeEEEEE--CCEEEEec--------CCeEEEeeccccccccccCCcceeecccccccc--CCCCceEEE
Q 012060 373 MISSSGNNNGENKLIHCY--KNQVFVGR--------GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVED--SGRGAISRI 440 (472)
Q Consensus 373 m~~~~~~~~~~~~~~~~~--~g~l~~~~--------g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~i~~~ 440 (472)
+..... ....|..+ +.+|||.. .++|.||+--..+ ..+..+. |..--+++-.. ..+..+.++
T Consensus 435 i~~~g~----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 435 FPALGG----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT-GDGSDPE-FKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp EECSCS----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC-CSSSCCC-EEEECHHHHHTCCSSCCEEEEE
T ss_pred EecCCC----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc-ccccCCC-cEEeccccccccCCCCcceEee
Confidence 443322 12344444 34899975 3589999875330 0001111 22211111000 124478888
Q ss_pred eec--CceEEEeee----ccceeEEeecCC
Q 012060 441 DAG--GNRLFVSRE----DVEGIEVWESSN 464 (472)
Q Consensus 441 ~~g--g~r~f~~~~----~~~~~~vw~~~~ 464 (472)
+|= |++++++.. +.+-|-|.++..
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 885 999999864 466677776543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=87.27 E-value=16 Score=36.90 Aligned_cols=112 Identities=11% Similarity=-0.080 Sum_probs=62.0
Q ss_pred ceeeeecCCCCccccCCCCcCcccceeEEEEe-C-CeEEE-Eec-C----CCCCceeEEEeCCCcccccccccccCCCcc
Q 012060 196 DLSSSRHVASAHWTDPSDPRIYRATVTAIADS-P-TTVFS-SLV-C----PHKENSVLLIDKSTLQISSEIGRQSGASSK 267 (472)
Q Consensus 196 ~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~-g~IYA-Gg~-~----~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~ 267 (472)
+.+..+|+.+.+-.. ..+.-.. .+ +++. + .+||+ ... . +...++|.+||+.|++++.+|.-..+....
T Consensus 59 ~~V~ViD~~t~~v~~--~I~vG~~-P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIG--MIDGGFL-PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp EEEEEEETTTTEEEE--EEEECSS-CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CEEEEEECCCCeEEE--EEECCCC-Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 567777777665332 1111111 12 3333 3 35999 311 1 113578999999999887776331100000
Q ss_pred c-ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 268 N-MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 268 ~-v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
. ..|-.....+-+..||++... ..++|-.+|..+++++-+..-|
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEEEEEEECC
T ss_pred cCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcEEEEEECC
Confidence 0 012223334456778987421 1358999999999988777544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=2.7 Score=45.18 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecC-C--CCccccCCCCcC-----ccc---ceeEEEE--eCCe----EEEEec
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHV-A--SAHWTDPSDPRI-----YRA---TVTAIAD--SPTT----VFSSLV 236 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp-~--t~~W~~~a~m~~-----~R~---~~~ava~--l~g~----IYAGg~ 236 (472)
.++.++.||+... +++ .+.++|. . +..|+.-..... .++ .- ++++ .++. ||++..
T Consensus 58 P~v~~g~vyv~~~--~~~-----~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTS--FPN-----NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp CEEETTEEEEECS--TTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECT
T ss_pred cEEECCEEEEEeC--CCC-----EEEEEeCCCCCcEEEEECCCCCcccccccccccccc-ceEEEecCCcceeEEEEEcC
Confidence 3457999998875 322 3445555 3 234665433211 011 11 2555 6888 999633
Q ss_pred CCCCCceeEEEeCCCcccccccccccCCCccccccc--------ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 237 CPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVG--------KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 237 ~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m--------~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
+ ..+-++|..| |+ ..|+.-... ..+ ...+++||+... ++..+..+.|..||++|++
T Consensus 130 d----g~l~AlDa~T-------G~---~~W~~~~~~~~~~~~~~ssP-~v~~g~V~vg~~-g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 130 D----GNVAALNAET-------GE---TVWKVENSDIKVGSTLTIAP-YVVKDKVIIGSS-GAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp T----SEEEEEETTT-------CC---EEEEEECCCGGGTCBCCSCC-EEETTEEEECCB-CGGGTCCCEEEEEETTTCC
T ss_pred C----CEEEEEECCC-------CC---EEEeecCCCCCccceeecCC-EEECCEEEEEec-ccccCCCCeEEEEECCCCc
Confidence 3 3577899999 44 336643211 111 225889988432 1111235689999999999
Q ss_pred eeeEEcCC
Q 012060 309 VVWETNEP 316 (472)
Q Consensus 309 ~vW~~~~~ 316 (472)
.+|++...
T Consensus 194 ~~W~~~~~ 201 (599)
T 1w6s_A 194 QVWRAYAT 201 (599)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 99998754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=86.19 E-value=11 Score=35.18 Aligned_cols=111 Identities=8% Similarity=0.082 Sum_probs=59.9
Q ss_pred eeeecCCC-CccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccc---
Q 012060 198 SSSRHVAS-AHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGK--- 273 (472)
Q Consensus 198 ve~ydp~t-~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~--- 273 (472)
+.+||+.. ..|....+-. .... .+..++.||+|..+ ..+-+||+. .+ ..|+.-.+..
T Consensus 80 l~~~d~~g~~~~~~~~~~~-~~~~---~~~~~~~l~v~t~~----~~l~~~d~~-g~----------~~~~~~~~~~~~~ 140 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKKA-IVSD---FTIFEDILYVTSMD----GHLYAINTD-GT----------EKWRFKTKKAIYA 140 (330)
T ss_dssp EEEECCCGGGGGGSCC------CC---EEEETTEEEEECTT----SEEEEECTT-SC----------EEEEEECSSCCCS
T ss_pred EEEECCCCcEEEEEECCCC-cccC---ceEECCEEEEEecC----CEEEEEcCC-CC----------EEEEEcCCCceee
Confidence 66777642 3465433221 1122 33448999996433 367788987 33 1254432211
Q ss_pred eeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEc
Q 012060 274 LTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKIC 344 (472)
Q Consensus 274 ~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vG 344 (472)
.....-++.||++. ..+.+.+||+. ++.+|+...+. .. -.++ +...++.||+..
T Consensus 141 ~~~~~~~g~l~vgt-------~~~~l~~~d~~-g~~~~~~~~~~----~~-~~~~----~~d~~g~l~v~t 194 (330)
T 3hxj_A 141 TPIVSEDGTIYVGS-------NDNYLYAINPD-GTEKWRFKTND----AI-TSAA----SIGKDGTIYFGS 194 (330)
T ss_dssp CCEECTTSCEEEEC-------TTSEEEEECTT-SCEEEEEECSS----CC-CSCC----EECTTCCEEEES
T ss_pred eeEEcCCCEEEEEc-------CCCEEEEECCC-CCEeEEEecCC----Cc-eeee----EEcCCCEEEEEe
Confidence 11222478888852 12579999999 88889987551 11 1121 122478888655
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=85.94 E-value=26 Score=33.78 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=43.7
Q ss_pred cCCeEEEEEEeCCCccccce-EEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGY-VRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~s-ve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
-++.++++|+.+ ++ |..||.++++++-++.... . ...+.+++... ++.+++.|+.++....-|++.
T Consensus 205 ~~g~~l~s~s~d------~~~v~iwd~~~~~~~~~~~~g~---h---~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 205 RKSDMVATCSQD------GTIIRVFKTEDGVLVREFRRGL---D---RADVVDMKWST-DGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TTSSEEEEEETT------CSEEEEEETTTCCEEEEEECTT---C---CSCEEEEEECT-TSCEEEEEETTCEEEEEESSC
T ss_pred CCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCC---C---CCcEEEEEECC-CCCEEEEEECCCEEEEEEccC
Confidence 367777877743 45 9999999999777665210 0 11222222233 677788888887655445544
Q ss_pred cCCCCcEE
Q 012060 358 LGEDPWVY 365 (472)
Q Consensus 358 ~e~d~W~~ 365 (472)
-..+++..
T Consensus 272 ~~~~~~~~ 279 (355)
T 3vu4_A 272 DQDNKRHA 279 (355)
T ss_dssp CSCCCSEE
T ss_pred CCCccccc
Confidence 33334443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.71 E-value=9.1 Score=40.06 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=78.7
Q ss_pred cccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEE--Ee-CC-eEEE-EecCCCCCce
Q 012060 169 DNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIA--DS-PT-TVFS-SLVCPHKENS 243 (472)
Q Consensus 169 ~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava--~l-~g-~IYA-Gg~~~~~l~s 243 (472)
+.+.++++..+...+.|+ .+| ++-.||..+.. .....+......+.+++ .. ++ .++| |+.+ .+
T Consensus 267 ~~v~sv~~s~~~~lasgs--~Dg-----tV~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D----~t 334 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGF--KNG-----FVAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD----GY 334 (524)
T ss_dssp TCEEEEEESSSSEEEEEE--TTS-----EEEEEETTBCS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT----SE
T ss_pred CCEEEEEecCCCeEEEEe--CCC-----EEEEEECCCCC-CceEEeecccccEEEEEEEcCCCCCeEEEEeccC----Ce
Confidence 345556655666777777 565 45566665431 11111111122333342 22 34 6778 6544 47
Q ss_pred eEEEeCCCccccccc-ccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCC
Q 012060 244 VLLIDKSTLQISSEI-GRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSA 322 (472)
Q Consensus 244 VE~YDp~t~~~~~~~-~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~ 322 (472)
|-.||..+.+++..+ ++... .....+.+.+ ++..+++|+. .++|.+||++++.++.+....
T Consensus 335 vklWD~~~~~~~~~~~~~~~~-----~~v~~v~fsp-~~~~l~s~~~------d~tv~lwd~~~~~~~~~l~gH------ 396 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRG-----SNLVPVVYCP-QIYSYIYSDG------ASSLRAVPSRAAFAVHPLVSR------ 396 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSC-----CSCCCEEEET-TTTEEEEECS------SSEEEEEETTCTTCCEEEEEC------
T ss_pred EEEEECCCCCccccccccccc-----CcccceEeCC-CcCeEEEeCC------CCcEEEEECcccccceeeecC------
Confidence 889999874432211 11100 0012345555 3555676652 347999999998865555533
Q ss_pred cccccccceeeeecCCeEEEEcccCCCcc
Q 012060 323 RFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 323 R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
...+.+|+... ++.+++.|+.|+...
T Consensus 397 --~~~V~sva~Sp-~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 397 --ETTITAIGVSR-LHPMVLAGSADGSLI 422 (524)
T ss_dssp --SSCEEEEECCS-SCCBCEEEETTTEEE
T ss_pred --CCceEEEEeCC-CCCeEEEEECCCEEE
Confidence 12333344444 556677888887644
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=85.04 E-value=35 Score=34.58 Aligned_cols=137 Identities=11% Similarity=0.247 Sum_probs=67.7
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
-++.++++++.+ +.|..||.. ++.+-+.... ...+.+++... ++++.+.|+.++....-| .
T Consensus 436 ~d~~~l~~~~~d------~~v~~w~~~-~~~~~~~~~~--------~~~v~~~~~sp-d~~~las~~~d~~i~iw~---~ 496 (577)
T 2ymu_A 436 PDDQTIASASDD------KTVKLWNRN-GQLLQTLTGH--------SSSVRGVAFSP-DGQTIASASDDKTVKLWN---R 496 (577)
T ss_dssp TTSSEEEEEETT------SEEEEEETT-SCEEEEEECC--------SSCEEEEEECT-TSCEEEEEETTSEEEEEE---T
T ss_pred CCCCEEEEEcCC------CEEEEEECC-CCEEEEEcCC--------CCCEEEEEEcC-CCCEEEEEeCCCEEEEEc---C
Confidence 356666776633 479999964 4444444433 11122222333 677788888776543211 1
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCC
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRG 435 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 435 (472)
+. ..+.. +..... .=..|+. -+|++++++ .+.|.+|+.. . +..+ -+.++ .+
T Consensus 497 -~~--~~~~~----~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--------~-~~~~-~~~~h-----~~ 550 (577)
T 2ymu_A 497 -NG--QLLQT----LTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN--------G-QLLQ-TLTGH-----SS 550 (577)
T ss_dssp -TS--CEEEE----EECCSS----CEEEEEECTTSSCEEEEETTSEEEEECTT--------S-CEEE-EEECC-----SS
T ss_pred -CC--CEEEE----EeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEeCC--------C-CEEE-EEcCC-----CC
Confidence 11 12221 111110 0112222 245555544 3789999842 1 1112 13333 45
Q ss_pred ceEEEeec--CceEEEeeeccceeEEee
Q 012060 436 AISRIDAG--GNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 436 ~i~~~~~g--g~r~f~~~~~~~~~~vw~ 461 (472)
.|+.++|- |..|+..-. -..|-||.
T Consensus 551 ~v~~~~fs~dg~~l~s~~~-D~~i~~Wd 577 (577)
T 2ymu_A 551 SVWGVAFSPDGQTIASASS-DKTVKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEET-TSCEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeC-CCEEEEeC
Confidence 79988886 445554444 45688995
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=84.81 E-value=36 Score=34.50 Aligned_cols=138 Identities=13% Similarity=0.268 Sum_probs=69.9
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
-++..+++|+.+ +.|..||. +++.+.+.... ...+.+++... ++.+.+.|+.++....-|+
T Consensus 395 ~dg~~l~~~~~d------~~v~~~~~-~~~~~~~~~~~--------~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~--- 455 (577)
T 2ymu_A 395 PDGQTIASASDD------KTVKLWNR-NGQLLQTLTGH--------SSSVWGVAFSP-DDQTIASASDDKTVKLWNR--- 455 (577)
T ss_dssp TTSSCEEEEETT------SEEEEECT-TCCEEEEEECC--------SSCEEEEEECT-TSSEEEEEETTSEEEEEET---
T ss_pred CCCCEEEEEeCC------CEEEEEeC-CCCEEEEecCC--------CCCeEEEEECC-CCCEEEEEcCCCEEEEEEC---
Confidence 356666776633 47999995 45544555443 11122222333 6677778887765432121
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCC
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRG 435 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 435 (472)
... .+.. +..... .-..++. -++++++++ ++.|.+|+.- .+. .+.+.++ .+
T Consensus 456 ~~~---~~~~----~~~~~~----~v~~~~~spd~~~las~~~d~~i~iw~~~---------~~~-~~~~~~h-----~~ 509 (577)
T 2ymu_A 456 NGQ---LLQT----LTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN---------GQL-LQTLTGH-----SS 509 (577)
T ss_dssp TSC---EEEE----EECCSS----CEEEEEECTTSCEEEEEETTSEEEEEETT---------SCE-EEEEECC-----SS
T ss_pred CCC---EEEE----EcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEEEcCC---------CCE-EEEEeCC-----CC
Confidence 111 1111 111111 0111222 256666654 4789999842 122 2223333 45
Q ss_pred ceEEEeec--CceEEEeeeccceeEEeec
Q 012060 436 AISRIDAG--GNRLFVSREDVEGIEVWES 462 (472)
Q Consensus 436 ~i~~~~~g--g~r~f~~~~~~~~~~vw~~ 462 (472)
.|+.++|- |..|+ +=.+...|-||+.
T Consensus 510 ~v~~l~~s~dg~~l~-s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIA-SASDDKTVKLWNR 537 (577)
T ss_dssp CEEEEEECTTSSCEE-EEETTSEEEEECT
T ss_pred CEEEEEEcCCCCEEE-EEECcCEEEEEeC
Confidence 79988885 44444 4445567999984
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=84.81 E-value=23 Score=32.36 Aligned_cols=196 Identities=9% Similarity=0.141 Sum_probs=94.6
Q ss_pred EEEe-CCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEE
Q 012060 224 IADS-PTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMW 302 (472)
Q Consensus 224 va~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~y 302 (472)
+++. ++.||++... ...|-+||+.. +.+..+.......-....|..+....-++.||++... ..+.|.+|
T Consensus 35 v~~~~~g~l~v~~~~---~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~~~ 105 (286)
T 1q7f_A 35 VAVNAQNDIIVADTN---NHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIY 105 (286)
T ss_dssp EEECTTCCEEEEEGG---GTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEE
T ss_pred EEECCCCCEEEEECC---CCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEEEE
Confidence 5543 5689984221 34788999874 3232222100000011112222222357899998531 13579999
Q ss_pred cCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCC
Q 012060 303 DPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNG 382 (472)
Q Consensus 303 Dp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~ 382 (472)
|+ +++.+++...+. ...+ .+ +++.. ++.||+....++.+...|. +......+.. ...+.
T Consensus 106 d~-~g~~~~~~~~~~-~~~~---~~---i~~~~-~g~l~v~~~~~~~i~~~~~---~g~~~~~~~~-~~~~~-------- 164 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATI-LQHP---RG---VTVDN-KGRIIVVECKVMRVIIFDQ---NGNVLHKFGC-SKHLE-------- 164 (286)
T ss_dssp CT-TSCEEEEECTTT-CSCE---EE---EEECT-TSCEEEEETTTTEEEEECT---TSCEEEEEEC-TTTCS--------
T ss_pred CC-CCcEEEEecCcc-CCCc---eE---EEEeC-CCCEEEEECCCCEEEEEcC---CCCEEEEeCC-CCccC--------
Confidence 95 555555553321 1111 12 22333 6789987654443222111 1111122221 00000
Q ss_pred cCeEEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccc-ee
Q 012060 383 ENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVE-GI 457 (472)
Q Consensus 383 ~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~-~~ 457 (472)
.-.+|++- +|+||++. ++.|.+|+.-. +..+. +-.. ..-..+..|++-. ++|||+-...+ .|
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---------~~~~~-~~~~---g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEG---------QYLRQ-IGGE---GITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTC---------CEEEE-ESCT---TTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCC---------CEEEE-EccC---CccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 12344443 47899985 57899998521 11111 1111 0113567777743 37888876665 88
Q ss_pred EEeec
Q 012060 458 EVWES 462 (472)
Q Consensus 458 ~vw~~ 462 (472)
.+|+.
T Consensus 232 ~~~~~ 236 (286)
T 1q7f_A 232 TIFTQ 236 (286)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88873
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=83.92 E-value=4.1 Score=43.47 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=66.8
Q ss_pred eeeeCCeEEEEcCcCCCCceecceeeeecCCC--CccccCCCCcC---ccc---ceeEEEEeCCeEEEEecCCCCCceeE
Q 012060 174 IRHVWSDVAAVGSDYSSGIHFYDLSSSRHVAS--AHWTDPSDPRI---YRA---TVTAIADSPTTVFSSLVCPHKENSVL 245 (472)
Q Consensus 174 v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t--~~W~~~a~m~~---~R~---~~~ava~l~g~IYAGg~~~~~l~sVE 245 (472)
.++.++.||+... .++ +.++|..+ ..|+.-..... ..+ .- +++..++.||++..+ ..+-
T Consensus 64 P~v~~g~vyv~~~--~~~------v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~~~~v~~~t~d----g~l~ 130 (582)
T 1flg_A 64 AIVSDGVIYVTAS--YSR------LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIYGDKVFFGTLD----ASVV 130 (582)
T ss_dssp CEEETTEEEEEET--TTE------EEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEETTEEEEEETT----TEEE
T ss_pred cEEECCEEEEEcC--CCC------EEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEECCEEEEEeCC----CEEE
Confidence 3457999999876 332 44555432 33655332211 001 12 256789999996433 3678
Q ss_pred EEeCCCcccccccccccCCCccccccc--------ceeEEecCC------eEEEEEEeCCCccccceEEEEcCCCCeeee
Q 012060 246 LIDKSTLQISSEIGRQSGASSKNMAVG--------KLTWIPATG------VVLGSAIAWGAFGYSGYVRMWDPRSGEVVW 311 (472)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~W~~v~~m--------~~~~~~~~g------~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW 311 (472)
++|++| |+ -.|+.-... ..+.+ .++ +||+... ++.....+.|..||+++++++|
T Consensus 131 AlD~~T-------G~---~~W~~~~~~~~~~~~~~~sP~v-~~~~~~G~~~v~vg~~-~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 131 ALNKNT-------GK---VVWKKKFADHGAGYTMTGAPTI-VKDGKTGKVLLIHGSS-GDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EEESSS-------CC---EEEEEECSCGGGTCBCCSCCEE-EECTTTCCEEEEECCB-CGGGCCBCEEEEECTTTCCEEE
T ss_pred EEECCC-------CC---EEeeecCCCCCcCcccccCCEE-eCCCcCCcEEEEEecc-ccccCCCCEEEEEECCCCCEEe
Confidence 999999 44 336543211 11122 345 7776322 1111235789999999999999
Q ss_pred EEcC
Q 012060 312 ETNE 315 (472)
Q Consensus 312 ~~~~ 315 (472)
+...
T Consensus 199 ~~~~ 202 (582)
T 1flg_A 199 MRPF 202 (582)
T ss_dssp EEES
T ss_pred ecCC
Confidence 8754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=83.67 E-value=29 Score=32.54 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=37.5
Q ss_pred CceeEEEeCCCcccccccccccCCCccccccc----ceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVG----KLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m----~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
-+.|-.+|++|.+ -.|+.-..- ......-+|.||+++ .+.|.+||| +++.+|++..+
T Consensus 14 ~~~v~~~d~~tG~----------~~w~~~~~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 14 WNKIAIINKDTKE----------IVWEYPLEKGWECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CSEEEEEETTTTE----------EEEEEECCTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEEECC
T ss_pred CCEEEEEECCCCe----------EEEEeCCCccCCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEEcCC
Confidence 3577899999944 236654321 111222477777731 246999999 89999999975
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=83.29 E-value=25 Score=31.58 Aligned_cols=223 Identities=11% Similarity=-0.012 Sum_probs=107.8
Q ss_pred CCeEEE-EcCcCCCCceecceeeeecCCCCccccCC--CCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAA-VGSDYSSGIHFYDLSSSRHVASAHWTDPS--DPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYa-vGG~~~~g~~~l~sve~ydp~t~~W~~~a--~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~ 253 (472)
++.||+ ... .+ ..+.+||+.+....... ....++ +++.. ++.||++.. .+.|-+||+.+..
T Consensus 34 ~g~l~v~~~~--~~-----~~i~~~~~~~~~~~~~~~~~~~~p~----~i~~~~~g~l~v~~~----~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 34 AGNVYVTSEG--MY-----GRVVKLATGSTGTTVLPFNGLYQPQ----GLAVDGAGTVYVTDF----NNRVVTLAAGSNN 98 (270)
T ss_dssp TCCEEEEECS--SS-----CEEEEECC-----EECCCCSCCSCC----CEEECTTCCEEEEET----TTEEEEECTTCSC
T ss_pred CCCEEEEccC--CC-----CcEEEecCCCcccceEeeCCcCCcc----eeEECCCCCEEEEcC----CCEEEEEeCCCce
Confidence 578888 433 12 24556776655433322 222222 25554 567999432 2478899998733
Q ss_pred cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
.. .+.. . ....|..+.. .-+|.||++.. ..+.|.+||+.+.. ...........+ .+ +++
T Consensus 99 ~~-~~~~---~--~~~~p~~i~~-~~~g~l~v~~~------~~~~i~~~~~~~~~--~~~~~~~~~~~p---~~---i~~ 157 (270)
T 1rwi_B 99 QT-VLPF---D--GLNYPEGLAV-DTQGAVYVADR------GNNRVVKLAAGSKT--QTVLPFTGLNDP---DG---VAV 157 (270)
T ss_dssp CE-ECCC---C--SCSSEEEEEE-CTTCCEEEEEG------GGTEEEEECTTCCS--CEECCCCSCCSC---CC---EEE
T ss_pred Ee-eeec---C--CcCCCcceEE-CCCCCEEEEEC------CCCEEEEEECCCce--eEeeccccCCCc---ee---EEE
Confidence 10 0000 0 0001111111 23678998753 23478999988776 333322111111 22 223
Q ss_pred eecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEE-CCEEEEec--CCeEEEeecccc
Q 012060 334 DVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVRE 410 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~ 410 (472)
.. ++.||+....++.+...|.. +..-..... ..+ . .-.+|+.- +|.||++. ++.|.+|+.-..
T Consensus 158 ~~-~g~l~v~~~~~~~i~~~~~~---~~~~~~~~~--~~~---~-----~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 158 DN-SGNVYVTDTDNNRVVKLEAE---SNNQVVLPF--TDI---T-----APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECTT---TCCEEECCC--SSC---C-----SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred eC-CCCEEEEECCCCEEEEEecC---CCceEeecc--cCC---C-----CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 33 67899876544433221211 111111110 001 1 13345554 46999986 578999876311
Q ss_pred ccccccCCcceeeccccccccCCCCceEEEeecC-ceEEEeeeccceeEEeecCC
Q 012060 411 GRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG-NRLFVSREDVEGIEVWESSN 464 (472)
Q Consensus 411 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~ 464 (472)
.. .. . .......+..+++.. ++|||+-.....|.+++...
T Consensus 224 --------~~-~~-~----~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 224 --------TS-TV-L----PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp --------CC-EE-C----CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred --------cc-ee-e----ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 00 11 0 001124578888863 37999988888888887543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.82 E-value=36 Score=33.00 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
++.++++| .+ +.|..||.++....+.....-..........+..++....+..+++.|+.++....-|+++
T Consensus 188 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 188 DYETYLSA-DD------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp TSSEEEEE-CS------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEe-CC------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 56666665 33 4799999995543344321100000000111222223333337889999998766556554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=82.64 E-value=50 Score=34.46 Aligned_cols=258 Identities=13% Similarity=0.080 Sum_probs=122.0
Q ss_pred eEEeeccc-CCCCCccccccccceeeeeCC--eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHVWS--DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~--~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
...+.|.. ....+...+-..+.++++-.+ .+++.|+ .++ ++-.||..+.+.. ..+......+.+++..
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s--~D~-----~v~lwd~~~~~~~--~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS--DDN-----TVAIFEGPPFKFK--STFGEHTKFVHSVRYN 199 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TTS-----CEEEEETTTBEEE--EEECCCSSCEEEEEEC
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEe--CCC-----eEEEEECCCCeEe--eeeccccCceEEEEEC
Confidence 45566765 333333333344444554332 3577777 454 3445564443322 1222223333345554
Q ss_pred -CCeEEE-EecCCCCCceeEEEeCCCcccccccccccC-CCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcC
Q 012060 228 -PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSG-ASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDP 304 (472)
Q Consensus 228 -~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~-~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp 304 (472)
++.++| |+.+ .+|-.||..+.+++..+....- ..-+.-....+.+.+ ++.++++|+. .++|.+||.
T Consensus 200 pdg~~las~s~D----~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~------D~~v~lWd~ 268 (611)
T 1nr0_A 200 PDGSLFASTGGD----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASA------DKTIKIWNV 268 (611)
T ss_dssp TTSSEEEEEETT----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEET------TSEEEEEET
T ss_pred CCCCEEEEEECC----CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeC------CCeEEEEeC
Confidence 456777 6554 4788999888554443311000 000111112233333 5666777763 357999999
Q ss_pred CCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcC
Q 012060 305 RSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGEN 384 (472)
Q Consensus 305 ~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~ 384 (472)
++++++-+..... .......+ +.. .+..++.++.++....-|++ +. ..... +.... ..
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~~~-----~~~-~~~~l~s~s~d~~i~~~~~~---~~--~~~~~----~~gh~-----~~ 326 (611)
T 1nr0_A 269 ATLKVEKTIPVGT--RIEDQQLG-----IIW-TKQALVSISANGFINFVNPE---LG--SIDQV----RYGHN-----KA 326 (611)
T ss_dssp TTTEEEEEEECCS--SGGGCEEE-----EEE-CSSCEEEEETTCCEEEEETT---TT--EEEEE----ECCCS-----SC
T ss_pred CCCceeeeecCCC--CccceeEE-----EEE-cCCEEEEEeCCCcEEEEeCC---CC--CcceE----EcCCC-----CC
Confidence 9998554443220 00000111 222 45556666666653321211 11 11111 11111 01
Q ss_pred e-EEEE-ECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEe
Q 012060 385 K-LIHC-YKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVW 460 (472)
Q Consensus 385 ~-~~~~-~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw 460 (472)
. .++. -+|+.++++ .+.|.+|+-... .. .+-+ .....+.|..+++-.+..+++=.....+.+|
T Consensus 327 v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~--------~~-~~~~----~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 327 ITALSSSADGKTLFSADAEGHINSWDISTG--------IS-NRVF----PDVHATMITGIKTTSKGDLFTVSWDDHLKVV 393 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC--------CE-EECS----SCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------ce-eeec----ccCCcceEEEEEECCCCcEEEEEcCCceEEe
Confidence 1 1221 145544443 488999985321 11 1111 1123457888888555555666666789999
Q ss_pred ecC
Q 012060 461 ESS 463 (472)
Q Consensus 461 ~~~ 463 (472)
+..
T Consensus 394 ~~~ 396 (611)
T 1nr0_A 394 PAG 396 (611)
T ss_dssp CSS
T ss_pred ecC
Confidence 854
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=82.51 E-value=11 Score=34.93 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=33.3
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
.++|..||+.+++++++...+. .. + ...+++....+..||+.+..++.+...|+
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~--~~---~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIAD--AG---P-TPMVPMVAPGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTT--CT---T-CCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEEcCC--CC---C-CccceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 4589999999999888776441 00 0 11233345556688988876655443343
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=82.47 E-value=30 Score=31.88 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=31.1
Q ss_pred ECCEEEEecCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC---ceEEEeeec
Q 012060 390 YKNQVFVGRGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG---NRLFVSRED 453 (472)
Q Consensus 390 ~~g~l~~~~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~ 453 (472)
-+|+||++.++.|.+|++- ++ ++++ + + ...+ ++.++||+ ++||++-.+
T Consensus 227 ~~G~l~v~~~~~v~~~~~~--------g~-~~~~-~----~-~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 227 AGGLIWASAGDGVHVLTPD--------GD-ELGR-V----L-TPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp TTSCEEEEETTEEEEECTT--------SC-EEEE-E----E-CSSC-CCEEEEESTTSCEEEEEETT
T ss_pred CCCCEEEEcCCeEEEECCC--------CC-EEEE-E----E-CCCC-ceeEEEECCCCCEEEEEcCC
Confidence 3689999999999999863 11 1121 1 1 1223 88888864 489998654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.37 E-value=29 Score=31.66 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=47.9
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
++|-.||..|.+.+..+.-..... .| ..+.+. -++..+++|+.+ ++|.+||.++++++.+....-
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~--~V--~~v~~~-~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~~h~---- 109 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGE--YI--SSVAWI-KEGNYLAVGTSS------AEVQLWDVQQQKRLRNMTSHS---- 109 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTC--CE--EEEEEC-TTSSEEEEEETT------SEEEEEETTTTEEEEEEECCS----
T ss_pred CEEEEEECCCCCEEEEEEecCCCC--eE--EEEEEC-CCCCEEEEEECC------CcEEEeecCCceeEEEecCcc----
Confidence 478899999855333221100000 01 122233 356666777743 479999999999887776441
Q ss_pred CcccccccceeeeecCCeEEEEcccCCC
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGD 349 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~ 349 (472)
.+. . .....+.+.+.|+.++.
T Consensus 110 ~~~-~------~~~~~~~~l~s~~~~~~ 130 (318)
T 4ggc_A 110 ARV-G------SLSWNSYILSSGSRSGH 130 (318)
T ss_dssp SCE-E------EEEEETTEEEEEETTSE
T ss_pred ceE-E------EeecCCCEEEEEecCCc
Confidence 111 1 12335667777777654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=81.66 E-value=29 Score=31.15 Aligned_cols=137 Identities=12% Similarity=-0.018 Sum_probs=68.4
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccC--CCCcCcccceeEEEEe-CCeEEEEecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP--SDPRIYRATVTAIADS-PTTVFSSLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~--a~m~~~R~~~~ava~l-~g~IYAGg~~~~~l~sVE~YDp~t~~~ 254 (472)
++.+|+... .+ ..+.+||+.+...... ..+..++ +++.. ++.||++... .+.|.+||+.+.+.
T Consensus 118 ~g~l~v~~~--~~-----~~i~~~~~~~~~~~~~~~~~~~~p~----~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 118 QGAVYVADR--GN-----NRVVKLAAGSKTQTVLPFTGLNDPD----GVAVDNSGNVYVTDTD---NNRVVKLEAESNNQ 183 (270)
T ss_dssp TCCEEEEEG--GG-----TEEEEECTTCCSCEECCCCSCCSCC----CEEECTTCCEEEEEGG---GTEEEEECTTTCCE
T ss_pred CCCEEEEEC--CC-----CEEEEEECCCceeEeeccccCCCce----eEEEeCCCCEEEEECC---CCEEEEEecCCCce
Confidence 678888754 22 2455667665544322 2222222 25554 5789994221 35789999987331
Q ss_pred ccccccccCCCccc-ccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceee
Q 012060 255 SSEIGRQSGASSKN-MAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDV 333 (472)
Q Consensus 255 ~~~~~~~~~~~W~~-v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v 333 (472)
... .... ..|..+. ..-+|.||++.. ..+.|.+||+..... .. .... .-..-.+ +++
T Consensus 184 ~~~-------~~~~~~~p~~i~-~d~~g~l~v~~~------~~~~v~~~~~~~~~~-~~-~~~~---~~~~p~~---i~~ 241 (270)
T 1rwi_B 184 VVL-------PFTDITAPWGIA-VDEAGTVYVTEH------NTNQVVKLLAGSTTS-TV-LPFT---GLNTPLA---VAV 241 (270)
T ss_dssp EEC-------CCSSCCSEEEEE-ECTTCCEEEEET------TTSCEEEECTTCSCC-EE-CCCC---SCSCEEE---EEE
T ss_pred Eee-------cccCCCCceEEE-ECCCCCEEEEEC------CCCcEEEEcCCCCcc-ee-eccC---CCCCcee---EEE
Confidence 110 0000 1111111 124678998753 134699999987752 22 2111 0011122 223
Q ss_pred eecCCeEEEEcccCCCcc
Q 012060 334 DVDELTLFKICSKSGDIA 351 (472)
Q Consensus 334 ~~~~~~iy~vGg~~g~~~ 351 (472)
.. ++.||+....++...
T Consensus 242 ~~-~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVV 258 (270)
T ss_dssp CT-TCCEEEEEGGGTEEE
T ss_pred CC-CCCEEEEECCCCEEE
Confidence 33 568998887665543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.01 E-value=33 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 297 GYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
++|..||+.+++++-...... . ...+..++... ++...+.|+.|+...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~---~---~~~V~~v~~~~-~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQ---P---GEYISSVAWIK-EGNYLAVGTSSAEVQ 92 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCS---T---TCCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEEecC---C---CCeEEEEEECC-CCCEEEEEECCCcEE
Confidence 479999999998665554331 1 11122222333 677888999887644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 472 | ||||
| d1t1da_ | 100 | d.42.1.2 (A:) Shaker potassium channel {California | 2e-21 | |
| d3kvta_ | 103 | d.42.1.2 (A:) akv3.1 voltage-gated potassium chann | 4e-21 | |
| d1nn7a_ | 105 | d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus | 5e-18 |
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Score = 86.8 bits (215), Expect = 2e-21
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS---DEPNPIFIDRDPDVFSVLLSL 72
+RV +NV G FET L T+ PD+LL R N F DR+ F +L
Sbjct: 1 ERVVINVSGLRFETQLKTLNQF-PDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYF 59
Query: 73 LRSNRLPSTASRFSKQELADEALYYGID 100
+S ++E +Y +
Sbjct: 60 YQSGGRLRRPVNVPLDVFSEEIKFYELG 87
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Score = 86.1 bits (213), Expect = 4e-21
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSL 72
+RV +NVGG ET +T++ P + L L+ N F DR P VF+ +++
Sbjct: 2 NRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60
Query: 73 LRSNRLPSTASRFSKQELADEALYYGIDSQL 103
RS +L + +E ++G+DS
Sbjct: 61 YRSGKLHYP-TDVCGPLFEEELEFWGLDSNQ 90
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.2 bits (190), Expect = 5e-18
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 18 VKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQS--DEPNPIFIDRDPDVFSVLLSLLRS 75
+ LNV G F+T T++ PD+LL + E F DRDPD+F +L+ R+
Sbjct: 2 IVLNVSGTRFQTWQDTLER-YPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 76 NRLPSTASRFSKQELADEALYYGIDSQL 103
+L +E ++G+ ++
Sbjct: 61 GKLH-YPRHECISAYDEELAFFGLIPEI 87
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.94 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.9 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.88 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 99.82 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 99.79 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 99.78 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.77 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.49 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.47 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.79 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.26 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.15 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.1 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 96.81 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.6 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.46 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.2 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.09 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.08 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.51 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.13 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 95.1 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.04 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.91 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.67 | |
| d1hv2a_ | 99 | Elongin C {Baker's yeast (Saccharomyces cerevisiae | 94.47 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 94.43 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 94.29 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 94.06 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 93.71 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.7 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.63 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 93.52 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.26 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 92.83 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 92.6 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.8 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 91.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 91.6 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.55 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 91.42 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 91.07 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 89.55 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 88.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 88.74 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 88.68 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 88.63 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 88.46 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 87.11 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 84.28 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 83.18 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.76 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.7e-26 Score=216.84 Aligned_cols=231 Identities=15% Similarity=0.166 Sum_probs=185.7
Q ss_pred CcEEEeeeCc-------eEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcC--CCCceecceeeeecCCC
Q 012060 141 GSLWIAHGGQ-------ISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDY--SSGIHFYDLSSSRHVAS 205 (472)
Q Consensus 141 g~l~va~GG~-------Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~--~~g~~~l~sve~ydp~t 205 (472)
..|| +.||. +++|| |.. ++|+.+|.+|. ++++++.||++||.. .++...++.++.|||.+
T Consensus 5 ~~iy-v~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 79 (288)
T d1zgka1 5 RLIY-TAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA----GCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 79 (288)
T ss_dssp CCEE-EECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE----EEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CEEE-EECCcCCCCCceEEEEECCCCeEEECCCCCCccceeE----EEEECCEEEEEeCcccCCCCccccchhhhccccc
Confidence 5678 45553 99999 988 99999999984 445899999999941 13456678999999999
Q ss_pred CccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEE-----e
Q 012060 206 AHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI-----P 278 (472)
Q Consensus 206 ~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~-----~ 278 (472)
++|..+++|+.+|+.++ +++++++||+ ||..+ ..++.+|+||+.+++ |...+++...+. .
T Consensus 80 ~~w~~~~~~p~~r~~~~-~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~r~~~~~~~ 146 (288)
T d1zgka1 80 NQWSPCAPMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPERDE------------WHLVAPMLTRRIGVGVAV 146 (288)
T ss_dssp TEEEECCCCSSCCBTCE-EEEETTEEEEECCEETTEECCCEEEEETTTTE------------EEECCCCSSCCBSCEEEE
T ss_pred ccccccccccceeccee-ccccceeeEEecceecccccceeeeeccccCc------------cccccccccccccceeee
Confidence 99999999999999995 9999999999 76655 458999999999944 888877665543 3
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc-
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN- 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s- 357 (472)
.++.+|+.||.+... .+..+++|||.+++ |..... +...|..++ +++.++.||++||.++.....++..
T Consensus 147 ~~~~~~~~GG~~~~~-~~~~~~~~d~~~~~--~~~~~~--~~~~~~~~~-----~~~~~~~i~i~GG~~~~~~~~~~~~~ 216 (288)
T d1zgka1 147 LNRLLYAVGGFDGTN-RLNSAECYYPERNE--WRMITA--MNTIRSGAG-----VCVLHNCIYAAGGYDGQDQLNSVERY 216 (288)
T ss_dssp ETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEECCC--CSSCCBSCE-----EEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred eeecceEecCccccc-ccceEEEeeccccc--cccccc--ccccccccc-----ccceeeeEEEecCccccccccceeee
Confidence 789999998876554 46789999999999 998877 467777777 4888999999999876533222222
Q ss_pred -cCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-------CeEEEeecc
Q 012060 358 -LGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG-------GSLEVWSRV 408 (472)
Q Consensus 358 -~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g-------~~~~v~~~~ 408 (472)
..+++|+.+++ ++.+| ..+++++++|+||+.+| .+||+|+..
T Consensus 217 ~~~~~~~~~~~~----~p~~r-----~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~ 266 (288)
T d1zgka1 217 DVETETWTFVAP----MKHRR-----SALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 266 (288)
T ss_dssp ETTTTEEEECCC----CSSCC-----BSCEEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred eecceeeecccC----ccCcc-----cceEEEEECCEEEEEecCCCCeecceEEEEECC
Confidence 22889999987 77788 47889999999999988 668888775
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.4e-23 Score=198.53 Aligned_cols=212 Identities=14% Similarity=0.149 Sum_probs=172.1
Q ss_pred CCcEEEeeeC-----------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeec
Q 012060 140 DGSLWIAHGG-----------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 140 ~g~l~va~GG-----------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
++.+|+.+|. .+++|| |.. ++|+.+|..+++ +++++++|++|| ..+...++.++.||
T Consensus 50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~----~~~~~~i~~~gg--~~~~~~~~~~~~~~ 123 (288)
T d1zgka1 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV----GVIDGHIYAVGG--SHGCIHHNSVERYE 123 (288)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE----EEETTEEEEECC--EETTEECCCEEEEE
T ss_pred CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec----cccceeeEEecc--eecccccceeeeec
Confidence 4678855441 188999 888 999999999854 458999999999 67778899999999
Q ss_pred CCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeE----
Q 012060 203 VASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTW---- 276 (472)
Q Consensus 203 p~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~---- 276 (472)
+.+++|...+.+...|.+++ +++.++.+|+ ||... ..++.+++|||.+++ |...+.+...+
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~------------~~~~~~~~~~~~~~~ 190 (288)
T d1zgka1 124 PERDEWHLVAPMLTRRIGVG-VAVLNRLLYAVGGFDGTNRLNSAECYYPERNE------------WRMITAMNTIRSGAG 190 (288)
T ss_dssp TTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTTE------------EEECCCCSSCCBSCE
T ss_pred cccCccccccccccccccce-eeeeeecceEecCcccccccceEEEeeccccc------------ccccccccccccccc
Confidence 99999999999999999996 8889999999 77665 458999999999944 77766644432
Q ss_pred -EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 277 -IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 277 -~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
...++.||+.||.++.. .+.+...||+.+++ |+..++ +..+|.++++ ++.+++||++||.++.....++
T Consensus 191 ~~~~~~~i~i~GG~~~~~-~~~~~~~~~~~~~~--~~~~~~--~p~~r~~~~~-----~~~~~~l~v~GG~~~~~~~~~v 260 (288)
T d1zgka1 191 VCVLHNCIYAAGGYDGQD-QLNSVERYDVETET--WTFVAP--MKHRRSALGI-----TVHQGRIYVLGGYDGHTFLDSV 260 (288)
T ss_dssp EEEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEECCC--CSSCCBSCEE-----EEETTEEEEECCBCSSCBCCEE
T ss_pred ccceeeeEEEecCccccc-cccceeeeeeccee--eecccC--ccCcccceEE-----EEECCEEEEEecCCCCeecceE
Confidence 24789999999877654 56799999999999 999998 5889999985 7789999999998876554344
Q ss_pred cccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEE
Q 012060 356 RNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHC 389 (472)
Q Consensus 356 ~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 389 (472)
..+. +|+|+.+++ |+.+| +++++|+
T Consensus 261 ~~yd~~~~~W~~~~~----~p~~R-----~~~~~~~ 287 (288)
T d1zgka1 261 ECYDPDTDTWSEVTR----MTSGR-----SGVGVAV 287 (288)
T ss_dssp EEEETTTTEEEEEEE----CSSCC-----BSCEEEE
T ss_pred EEEECCCCEEEECCC----CCCCc-----EeEEEEE
Confidence 3333 899999998 88888 4666654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.88 E-value=5.8e-22 Score=197.51 Aligned_cols=250 Identities=13% Similarity=0.051 Sum_probs=165.6
Q ss_pred ccCCcEEEeeeC-------------ceEEee-----ccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceeccee
Q 012060 138 SDDGSLWIAHGG-------------QISVYD-----WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLS 198 (472)
Q Consensus 138 ~~~g~l~va~GG-------------~Ve~YD-----W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sv 198 (472)
+.++.||+.+|- .++.|| |.. +.|+.+|..++... +...+++||++|| .++ +++
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~-~~~~~g~i~v~Gg--~~~----~~~ 100 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI-SMDGNGQIVVTGG--NDA----KKT 100 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE-EECTTSCEEEECS--SST----TCE
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEE-EEecCCcEEEeec--CCC----cce
Confidence 345788865551 177899 987 77888887765532 3346899999998 333 678
Q ss_pred eeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCC--CCCceeEEEeCCCcc--ccccccccc----------
Q 012060 199 SSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCP--HKENSVLLIDKSTLQ--ISSEIGRQS---------- 262 (472)
Q Consensus 199 e~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~--~~l~sVE~YDp~t~~--~~~~~~~~~---------- 262 (472)
+.|||.+++|...++|+.+|..++ ++++ |++||+ ||... ..++++|+|||.+++ .++++....
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~-~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQS-SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCE-EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred eEecCccCcccccccccccccccc-eeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence 999999999999999999999986 5555 789999 76543 348999999999954 111111000
Q ss_pred --------------------------------CCCcccccccceeEE--------------ecCCeEEEEEEeCCCcc--
Q 012060 263 --------------------------------GASSKNMAVGKLTWI--------------PATGVVLGSAIAWGAFG-- 294 (472)
Q Consensus 263 --------------------------------~~~W~~v~~m~~~~~--------------~~~g~Lyv~Gg~~g~~~-- 294 (472)
...|.....+...+. ..++++|+.||......
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence 011111111111100 13688999887543211
Q ss_pred ---ccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccc---cccccC-----CCCc
Q 012060 295 ---YSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMA---DLRNLG-----EDPW 363 (472)
Q Consensus 295 ---~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~---dl~s~e-----~d~W 363 (472)
....++.+++....-.|+..++ |..+|.+++. ++..+++||++||.+...... -+.++| +++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~r~~~~~----~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W 333 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNG--LYFARTFHTS----VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 333 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTC--CSSCCBSCEE----EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred ccceeecccccccccCCCceeeccc--ccccccccee----eeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence 1224556666666533766666 6888999885 344478999999965322211 123444 9999
Q ss_pred EEeecCCCCcccCCCCCCCcCeEEEEE--CCEEEEecCC----------eEEEeecccc
Q 012060 364 VYMEDKNPSMISSSGNNNGENKLIHCY--KNQVFVGRGG----------SLEVWSRVRE 410 (472)
Q Consensus 364 ~~~~~~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g~----------~~~v~~~~~~ 410 (472)
+.+++ |+.+| .+...+++ +|+||+.+|+ ++|||+++-+
T Consensus 334 ~~~~~----~~~~R-----~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl 383 (387)
T d1k3ia3 334 YKQNP----NSIVR-----VYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL 383 (387)
T ss_dssp EECCC----CSSCC-----CTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred EECCC----CCCcc-----cceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcchhc
Confidence 99998 88888 46777766 8999999883 5899998744
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=99.82 E-value=7.1e-21 Score=159.21 Aligned_cols=91 Identities=30% Similarity=0.471 Sum_probs=81.9
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHHH
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQELA 91 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll 91 (472)
.+.|+|||||++|.|+++||.+ +|+++|..|+... .++++++||||||.+|++||+|+|+|+++++ +..+...|+
T Consensus 1 ~~rI~LNVGG~~F~t~~~tL~~-~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~~p-~~~~~~~l~ 78 (103)
T d3kvta_ 1 ENRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYP-TDVCGPLFE 78 (103)
T ss_dssp CCEEEEEETTEEEEEEHHHHTT-SCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCC-SSSCHHHHH
T ss_pred CCEEEEEECCEEEEEeHHHHhh-CccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHccCCcccc-cccCHHHHH
Confidence 3689999999999999999999 8999999998864 4677899999999999999999999999976 456889999
Q ss_pred hhhhhcCcch-HHhhhc
Q 012060 92 DEALYYGIDS-QLKSAM 107 (472)
Q Consensus 92 ~eA~~~ql~~-l~~~c~ 107 (472)
+||+||||++ +++.||
T Consensus 79 ~Ea~yygi~~~~l~~Cc 95 (103)
T d3kvta_ 79 EELEFWGLDSNQVEPCC 95 (103)
T ss_dssp HHHHHHTCCGGGBCGGG
T ss_pred HHHHHcCCCHHHHHHHh
Confidence 9999999975 678888
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=2.6e-20 Score=156.27 Aligned_cols=89 Identities=27% Similarity=0.458 Sum_probs=79.2
Q ss_pred cEEEEECCeEEEEeHHHhhccCCCCccccccCCC--CCCCCCEEEcCChhhHHHHhhccccCcccCCCCCcchHHHHhhh
Q 012060 17 RVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ--SDEPNPIFIDRDPDVFSVLLSLLRSNRLPSTASRFSKQELADEA 94 (472)
Q Consensus 17 ~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~--~~~~~~vfiDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~eA 94 (472)
.|+|||||++|.|+++||++ +|+++|.+|+... .+.++++||||||.+|++||+|+|+|+++++ +..+.+.|++||
T Consensus 1 iI~LNVGG~~f~t~~~TL~~-~p~s~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~p-~~~~~~~l~~Ea 78 (105)
T d1nn7a_ 1 LIVLNVSGTRFQTWQDTLER-YPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYP-RHECISAYDEEL 78 (105)
T ss_dssp CEEEEETTEEEEECHHHHHT-SCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCC-TTSCHHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhc-CCCCCccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCccccC-CCccHHHHHHHH
Confidence 48999999999999999999 8999999998654 5678899999999999999999999999976 457899999999
Q ss_pred hhcCcchH-Hhhhc
Q 012060 95 LYYGIDSQ-LKSAM 107 (472)
Q Consensus 95 ~~~ql~~l-~~~c~ 107 (472)
+||||+++ ++.||
T Consensus 79 ~fygi~~~~l~~cc 92 (105)
T d1nn7a_ 79 AFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHTCCSCCBCHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 99999874 45666
|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=99.78 E-value=8.1e-20 Score=151.81 Aligned_cols=85 Identities=31% Similarity=0.483 Sum_probs=75.6
Q ss_pred CcEEEEECCeEEEEeHHHhhccCCCCccccccCCC---CCCCCCEEEcCChhhHHHHhhccccC-cccCCCCCcchHHHH
Q 012060 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQ---SDEPNPIFIDRDPDVFSVLLSLLRSN-RLPSTASRFSKQELA 91 (472)
Q Consensus 16 ~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~---~~~~~~vfiDrdp~~F~~IL~flrtg-~l~~~~~~~~v~~Ll 91 (472)
+.|+|||||++|+|+++||.+ +|+++|.+|+... .+++++|||||||.+|++||+|+||| .+++ ++..+.+.|+
T Consensus 1 drI~LNVGG~~f~t~~~tL~~-~p~s~l~~l~~~~~~~~~~~g~~FiDRdp~~F~~IL~flR~~~~l~~-~~~~~~~~l~ 78 (100)
T d1t1da_ 1 ERVVINVSGLRFETQLKTLNQ-FPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRR-PVNVPLDVFS 78 (100)
T ss_dssp CEEEEEETTEEEEEEHHHHHT-STTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCC-CTTSCHHHHH
T ss_pred CeEEEEECCEEEEEeHHHHhh-CCCchhHHHHhCCCcCCCCCCeEEEecCHHHHHHHHHHHhcCCCcCC-CCcccHHHHH
Confidence 579999999999999999999 8999999998743 47788999999999999999999995 5664 4567899999
Q ss_pred hhhhhcCcchH
Q 012060 92 DEALYYGIDSQ 102 (472)
Q Consensus 92 ~eA~~~ql~~l 102 (472)
+||+||||++.
T Consensus 79 ~Ea~y~gi~~~ 89 (100)
T d1t1da_ 79 EEIKFYELGEN 89 (100)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHHcCCCHH
Confidence 99999999874
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.77 E-value=5.6e-19 Score=175.56 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=105.8
Q ss_pred ccc-CCCCCccccccccceeeeeCCeEEEEcCcCC----CCceecceeeeecCCCCccccCCCCcCccccee--EEEEeC
Q 012060 156 WNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYS----SGIHFYDLSSSRHVASAHWTDPSDPRIYRATVT--AIADSP 228 (472)
Q Consensus 156 W~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~----~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~--ava~l~ 228 (472)
|.. .+++..|.++. ++..+++||++||... .....++.++.|||.+++|...++|+.+|..++ ++...+
T Consensus 11 W~~~~~~p~~~~~~a----~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~ 86 (387)
T d1k3ia3 11 WGPTIDLPIVPAAAA----IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN 86 (387)
T ss_dssp EEEEEECSSCCSEEE----EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred cCCcCCCCccccEEE----EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC
Confidence 776 77887777653 2347999999999320 122345678899999999999999988886542 123347
Q ss_pred CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEE------ecCCeEEEEEEeCCCccccceEEE
Q 012060 229 TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWI------PATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 229 g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~------~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++||+ ||.+ .+++++|||.+++ |+..++|..+|. ..+|+||++||.......++++|.
T Consensus 87 g~i~v~Gg~~---~~~~~~yd~~~~~------------w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~ 151 (387)
T d1k3ia3 87 GQIVVTGGND---AKKTSLYDSSSDS------------WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 151 (387)
T ss_dssp SCEEEECSSS---TTCEEEEEGGGTE------------EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CcEEEeecCC---CcceeEecCccCc------------ccccccccccccccceeeecCCceeeeccccccccccceeee
Confidence 88999 6544 4789999999933 999999887753 258999999886444335789999
Q ss_pred EcCCCCeeeeEEcCCC
Q 012060 302 WDPRSGEVVWETNEPG 317 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~ 317 (472)
|||.+++ |+...++
T Consensus 152 yd~~~~~--W~~~~~~ 165 (387)
T d1k3ia3 152 YSPSSKT--WTSLPNA 165 (387)
T ss_dssp EETTTTE--EEEETTS
T ss_pred ecCCCCc--eeecCCC
Confidence 9999999 9988764
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.1e-15 Score=125.71 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred CCcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCCCCCEEE-cCChhhHHHHhhccccCcccCCCCCcchHHHHhh
Q 012060 15 GDRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDEPNPIFI-DRDPDVFSVLLSLLRSNRLPSTASRFSKQELADE 93 (472)
Q Consensus 15 ~~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~~~~vfi-Drdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~e 93 (472)
--||+|.|+|+.|++||.+|+++ |+||++||++ ...++-+ +.+|++|+.+|+|+|||++.++. .++.+++.+
T Consensus 28 ~~Dv~l~v~~~~~~aHk~vLaa~--S~~F~~lf~~---~~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~--~~v~~ll~~ 100 (121)
T d1buoa_ 28 LCDVVIMVDSQEFHAHRTVLACT--SKMFEILFHR---NSQHYTLDFLSPKTFQQILEYAYTATLQAKA--EDLDDLLYA 100 (121)
T ss_dssp TCCEEEEESSCEEEECHHHHHHH--CHHHHHHTTS---CCSEEEECSSCHHHHHHHHHHHHHSCCCCCG--GGHHHHHHH
T ss_pred cEeEEEEECCEEEEEEHHHhccc--ChhhhhhccC---ccceeecCCCCHHHHHHHHHheEccccCCcH--HHHHHHHHH
Confidence 35999999999999999999998 8899999975 3456655 89999999999999999999876 899999999
Q ss_pred hhhcCcchHHhhhc
Q 012060 94 ALYYGIDSQLKSAM 107 (472)
Q Consensus 94 A~~~ql~~l~~~c~ 107 (472)
|.+||++.+.+.|.
T Consensus 101 A~~l~~~~L~~~C~ 114 (121)
T d1buoa_ 101 AEILEIEYLEEQCL 114 (121)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 99999999999996
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.9e-15 Score=124.97 Aligned_cols=88 Identities=16% Similarity=0.284 Sum_probs=77.0
Q ss_pred CcEEEEECCeEEEEeHHHhhccCCCCccccccCCCCCC-CCC-EE-EcCChhhHHHHhhccccCcccCCCCCcchHHHHh
Q 012060 16 DRVKLNVGGKLFETTLSTIQSGGPDSLLYALSNRQSDE-PNP-IF-IDRDPDVFSVLLSLLRSNRLPSTASRFSKQELAD 92 (472)
Q Consensus 16 ~~V~LnVGG~~F~t~r~tLa~~~pssyf~amf~~~~~~-~~~-vf-iDrdp~~F~~IL~flrtg~l~~~~~~~~v~~Ll~ 92 (472)
-||+|.|+|+.|++||.+|+++ |+||++||.....+ ... +. .+.+|+.|+.+|+|+|||++.++. .++.+++.
T Consensus 26 ~Dv~l~v~~~~~~~Hk~vLa~~--S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~--~~v~~ll~ 101 (122)
T d1r29a_ 26 TDVVIVVSREQFRAHKTVLMAC--SGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLRE--GNIMAVMA 101 (122)
T ss_dssp CCEEEEETTEEEEECHHHHHHH--CHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT--TTHHHHHH
T ss_pred eEEEEEECCEEEEEehHHhhhC--CHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCch--hhHHHHHH
Confidence 5999999999999999999998 88999999865222 222 22 379999999999999999999876 79999999
Q ss_pred hhhhcCcchHHhhhc
Q 012060 93 EALYYGIDSQLKSAM 107 (472)
Q Consensus 93 eA~~~ql~~l~~~c~ 107 (472)
+|.+||++.+++.|.
T Consensus 102 ~A~~l~i~~L~~~C~ 116 (122)
T d1r29a_ 102 TAMYLQMEHVVDTCR 116 (122)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHCcHHHHHHHH
Confidence 999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.79 E-value=0.0081 Score=55.94 Aligned_cols=280 Identities=9% Similarity=0.025 Sum_probs=137.3
Q ss_pred cceeeccCCcEEEeeeCceEEeec-ccCCCCCccccccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCcccc
Q 012060 133 TFTASSDDGSLWIAHGGQISVYDW-NLSHSVTVRTHLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTD 210 (472)
Q Consensus 133 a~r~~~~~g~l~va~GG~Ve~YDW-~~~~m~~~R~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~ 210 (472)
.+...|....+.++.|+.|..||- ..........+-..+.++++. ++.+.|.|+ .+| ++..||..+.+...
T Consensus 22 ~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~--~dg-----~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD--VHG-----NVRIWDTTQTTHIL 94 (311)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEESSSTTCCE
T ss_pred EEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccc--cCc-----eEeeeeeecccccc
Confidence 344445533444344445666662 222222222223445555543 567778888 555 46677777666443
Q ss_pred CCCCcCcccceeEEEEeC-CeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEE
Q 012060 211 PSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAI 288 (472)
Q Consensus 211 ~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg 288 (472)
...+......+.+++... +..++ ++.+. ...+-+||..+.++...+--. -..+ ..+.+.+-+..++++|+
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~--~~~~~v~~~~~~~~~~~l~~h----~~~v--~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGR--ERFGHVFLFDTGTSNGNLTGQ----ARAM--NSVDFKPSRPFRIISGS 166 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCS--SCSEEEEETTTCCBCBCCCCC----SSCE--EEEEECSSSSCEEEEEE
T ss_pred ccccccccCccccccccccccccccccccc--ccccccccccccccccccccc----cccc--ccccccccceeeecccc
Confidence 333332223333355443 44444 54432 345778888885533322110 0111 22334444556677777
Q ss_pred eCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeec
Q 012060 289 AWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMED 368 (472)
Q Consensus 289 ~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~ 368 (472)
.+ +.|.+||.++.+........ . ..+..+...- ++.+++.|+.++....-|++. +..+..
T Consensus 167 ~d------~~i~i~d~~~~~~~~~~~~~---~-----~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~-----~~~~~~ 226 (311)
T d1nr0a1 167 DD------NTVAIFEGPPFKFKSTFGEH---T-----KFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD-----GTKTGV 226 (311)
T ss_dssp TT------SCEEEEETTTBEEEEEECCC---S-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----CCEEEE
T ss_pred cc------cccccccccccccccccccc---c-----ccccccccCc-ccccccccccccccccccccc-----cccccc
Confidence 44 46999999999866666543 1 1111122233 667778888887654323322 223322
Q ss_pred CCCCcccCCCCCCCcCeEEEEE--CCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecC
Q 012060 369 KNPSMISSSGNNNGENKLIHCY--KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGG 444 (472)
Q Consensus 369 ~~~~m~~~~~~~~~~~~~~~~~--~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg 444 (472)
++....... |- ...+.-.++ +++.+++++ +.|.+|+-- +.++.+. +-... .....++.+..-+
T Consensus 227 ~~~~~~~~~-~h-~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~--------t~~~~~~-l~~~~--~~~~~~~~~~~~~ 293 (311)
T d1nr0a1 227 FEDDSLKNV-AH-SGSVFGLTWSPDGTKIASASADKTIKIWNVA--------TLKVEKT-IPVGT--RIEDQQLGIIWTK 293 (311)
T ss_dssp CBCTTSSSC-SS-SSCEEEEEECTTSSEEEEEETTSEEEEEETT--------TTEEEEE-EECCS--SGGGCEEEEEECS
T ss_pred ccccccccc-cc-cccccccccCCCCCEEEEEeCCCeEEEEECC--------CCcEEEE-EECCC--CccceEEEEEecC
Confidence 111100100 00 011222222 466666654 779999842 1122221 11110 1122466788888
Q ss_pred ceEEEeeeccceeEEee
Q 012060 445 NRLFVSREDVEGIEVWE 461 (472)
Q Consensus 445 ~r~f~~~~~~~~~~vw~ 461 (472)
++|+.. .....|-+|+
T Consensus 294 ~~l~s~-s~dG~i~~wd 309 (311)
T d1nr0a1 294 QALVSI-SANGFINFVN 309 (311)
T ss_dssp SCEEEE-ETTCCEEEEE
T ss_pred CEEEEE-ECCCEEEEEe
Confidence 877655 4557888887
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.044 Score=47.62 Aligned_cols=262 Identities=15% Similarity=0.154 Sum_probs=124.0
Q ss_pred CcEEEeee---CceEEeeccc-CCCCCccccccccceeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC
Q 012060 141 GSLWIAHG---GQISVYDWNL-SHSVTVRTHLDNITSIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 141 g~l~va~G---G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
+..+ |.| |.|..||... ....+.+.+-+.+.++. .++.+.+.|+ .+| ++..++..............
T Consensus 25 ~~~l-~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~-~~~~~l~s~s--~D~-----~i~~~~~~~~~~~~~~~~~~ 95 (293)
T d1p22a2 25 DQKI-VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGS--SDS-----TVRVWDVNTGEMLNTLIHHC 95 (293)
T ss_dssp SSEE-EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE-CCSSEEEEEE--TTS-----CEEEEESSSCCEEEEECCCC
T ss_pred CCEE-EEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee-cccceeeccc--ccc-----cccccccccccccccccccc
Confidence 4444 444 4588877332 22222222333344444 4778888887 555 34445555544433322222
Q ss_pred cccceeEEEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccc-ccceeEEecCCeEEEEEEeCCCccc
Q 012060 217 YRATVTAIADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMA-VGKLTWIPATGVVLGSAIAWGAFGY 295 (472)
Q Consensus 217 ~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~m~~~~~~~~g~Lyv~Gg~~g~~~~ 295 (472)
.. .. +.....+.+..+.. ...+..||..+.+....+.. ... ...............+++.
T Consensus 96 ~~-~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~s~------ 156 (293)
T d1p22a2 96 EA-VL-HLRFNNGMMVTCSK----DRSIAVWDMASPTDITLRRV-------LVGHRAAVNVVDFDDKYIVSASG------ 156 (293)
T ss_dssp SC-EE-EEECCTTEEEEEET----TSCEEEEECSSSSCCEEEEE-------ECCCSSCEEEEEEETTEEEEEET------
T ss_pred cc-cc-cccccccceeeccc----ccceeEeecccccccccccc-------ccccccccccceecccccccccC------
Confidence 11 11 13333444444432 23566788776331110000 000 0111112222233333332
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCccc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMIS 375 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~ 375 (472)
.+.|..||+++.+.+.+...+. ..+ ......+...+.|+.++....-|+++ ...+.. ...
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~--------~~v---~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~----~~~ 216 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHK--------RGI---ACLQYRDRLVVSGSSDNTIRLWDIEC-----GACLRV----LEG 216 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCS--------SCE---EEEEEETTEEEEEETTSCEEEEETTT-----CCEEEE----ECC
T ss_pred CCceeeecCCCCcEEEEEcccc--------ccc---ccccCCCCeEEEecCCCEEEEEeccc-----ceeeee----ecc
Confidence 3579999999999888776551 111 11222455667788777644323332 223322 111
Q ss_pred CCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeec
Q 012060 376 SSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 376 ~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~ 453 (472)
.. ........+++.++++ +|.|-+|+-..............-+.+-++ .+.|..+++-|.. ++|=.+
T Consensus 217 ~~-----~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H-----~~~V~~v~~d~~~-l~s~s~ 285 (293)
T d1p22a2 217 HE-----ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-----SGRVFRLQFDEFQ-IVSSSH 285 (293)
T ss_dssp CS-----SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-----SSCCCCEEECSSC-EEECCS
T ss_pred cc-----eeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC-----CCCEEEEEEcCCE-EEEEec
Confidence 11 1222334455555554 388999975433111111111112223333 4579999997765 566666
Q ss_pred cceeEEee
Q 012060 454 VEGIEVWE 461 (472)
Q Consensus 454 ~~~~~vw~ 461 (472)
-..|-||+
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 67899996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.075 Score=47.51 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCceEEEeecCceEEEeee-ccc-eeEEeecC
Q 012060 434 RGAISRIDAGGNRLFVSRE-DVE-GIEVWESS 463 (472)
Q Consensus 434 ~~~i~~~~~gg~r~f~~~~-~~~-~~~vw~~~ 463 (472)
.+.|..+++=|++|+++=. |-+ -+.+|+-|
T Consensus 324 ~~~V~~v~~~~~~~~~~~s~dg~~~l~~~dfs 355 (355)
T d1nexb2 324 ADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355 (355)
T ss_dssp CSEEEEEEEETTEEEEEEESSSCEEEEEEECC
T ss_pred CCCEEEEEEcCCeEEEEEECCCcEEEEEEeCC
Confidence 5689999999999987643 444 37888743
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.084 Score=46.86 Aligned_cols=147 Identities=13% Similarity=0.242 Sum_probs=80.2
Q ss_pred ecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 278 PATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 278 ~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
..++..+++|+.+| .|.+||.++++.+.+..... .. -.+ ++. .+.+++.|+.++....-|++.
T Consensus 184 ~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~~~~---~~--v~~-----~~~-~~~~l~s~s~d~~i~iwd~~~ 246 (342)
T d2ovrb2 184 QFDGIHVVSGSLDT------SIRVWDVETGNCIHTLTGHQ---SL--TSG-----MEL-KDNILVSGNADSTVKIWDIKT 246 (342)
T ss_dssp EECSSEEEEEETTS------CEEEEETTTCCEEEEECCCC---SC--EEE-----EEE-ETTEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEEeCCC------eEEEeecccceeeeEecccc---cc--eeE-----Eec-CCCEEEEEcCCCEEEEEeccc
Confidence 35677777777444 69999999999777776551 10 111 233 456777888887654323322
Q ss_pred cCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCCC
Q 012060 358 LGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRG 435 (472)
Q Consensus 358 ~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 435 (472)
.+ +...+.. . .... ........++.+++++ .|.|-+|+-. +.++.|. +.........+
T Consensus 247 ~~--~~~~~~~---~-~~~~-----~~~~~~~~~~~~~~s~s~Dg~i~iwd~~--------tg~~i~~-~~~~~~~~~~~ 306 (342)
T d2ovrb2 247 GQ--CLQTLQG---P-NKHQ-----SAVTCLQFNKNFVITSSDDGTVKLWDLK--------TGEFIRN-LVTLESGGSGG 306 (342)
T ss_dssp CC--EEEEECS---T-TSCS-----SCEEEEEECSSEEEEEETTSEEEEEETT--------TCCEEEE-EEECTTGGGTC
T ss_pred cc--ccccccc---c-ceee-----eceeecccCCCeeEEEcCCCEEEEEECC--------CCCEEEE-EecccCCCCCC
Confidence 11 1112211 1 1111 2223334455555554 3899999753 1122222 22222222456
Q ss_pred ceEEEeecCceEEEeeeccce-----eEEee
Q 012060 436 AISRIDAGGNRLFVSREDVEG-----IEVWE 461 (472)
Q Consensus 436 ~i~~~~~gg~r~f~~~~~~~~-----~~vw~ 461 (472)
.|..+++--|+.+++=-..+| +.||+
T Consensus 307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence 799999988877766544444 78886
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=96.81 E-value=0.018 Score=51.29 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=64.1
Q ss_pred eEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CC-eEEEEecCCCCCceeEEEeCCCcccccc
Q 012060 180 DVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PT-TVFSSLVCPHKENSVLLIDKSTLQISSE 257 (472)
Q Consensus 180 ~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g-~IYAGg~~~~~l~sVE~YDp~t~~~~~~ 257 (472)
++||.+. .++ ++..+|+.+.+....-+.. ..-. ++++. +| +||+++.. .+.|.+||..+.+++..
T Consensus 3 ~~yV~~~--~~~-----~v~v~D~~t~~~~~~i~~g--~~p~-~va~spdG~~l~v~~~~---~~~i~v~d~~t~~~~~~ 69 (301)
T d1l0qa2 3 FAYIANS--ESD-----NISVIDVTSNKVTATIPVG--SNPM-GAVISPDGTKVYVANAH---SNDVSIIDTATNNVIAT 69 (301)
T ss_dssp EEEEEET--TTT-----EEEEEETTTTEEEEEEECS--SSEE-EEEECTTSSEEEEEEGG---GTEEEEEETTTTEEEEE
T ss_pred EEEEEEC--CCC-----EEEEEECCCCeEEEEEECC--CCce-EEEEeCCCCEEEEEECC---CCEEEEEECCCCceeee
Confidence 6788876 333 5778899988765532221 1112 36665 34 59984322 35799999999765544
Q ss_pred cccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 258 IGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 258 ~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
+... ..+....+..-...+++.+. + ...+..||+.+++.++.....
T Consensus 70 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~ 115 (301)
T d1l0qa2 70 VPAG-------SSPQGVAVSPDGKQVYVTNM-A-----SSTLSVIDTTSNTVAGTVKTG 115 (301)
T ss_dssp EECS-------SSEEEEEECTTSSEEEEEET-T-----TTEEEEEETTTTEEEEEEECS
T ss_pred eecc-------cccccccccccccccccccc-c-----cceeeecccccceeeeecccc
Confidence 4320 01122223334445555433 2 246889999999877766544
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.26 Score=45.06 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=127.6
Q ss_pred ccceeeccCCcEEEeee--CceEEeeccc-CCCCCc-c----ccccccceeeee-CCeEEEEcCcCCCCceecceeeeec
Q 012060 132 STFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTV-R----THLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRH 202 (472)
Q Consensus 132 ~a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~-R----~~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~yd 202 (472)
.++...|. +..+ +.| |.|..||+.. ...... . .+-+.+.++++. ++...++|+ .+| ++..||
T Consensus 55 ~~v~fs~~-g~~l-atg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~--~dg-----~i~iwd 125 (337)
T d1gxra_ 55 CAVTISNP-TRHV-YTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG--EAS-----TLSIWD 125 (337)
T ss_dssp CEEEECSS-SSEE-EEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE--SSS-----EEEEEE
T ss_pred EEEEECCC-CCEE-EEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee--ccc-----cccccc
Confidence 33444444 4444 344 4588888654 222111 1 112234455554 566777777 454 456677
Q ss_pred CCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecC
Q 012060 203 VASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPAT 280 (472)
Q Consensus 203 p~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~ 280 (472)
....+......+......+..++.. ++.+.+ ++.+ ..|..||..+.++...+... -..+ ..+.+. .+
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~~~~~~~~~~~~~~~----~~~v--~~l~~s-~~ 194 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD----GNIAVWDLHNQTLVRQFQGH----TDGA--SCIDIS-ND 194 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCC----SSCE--EEEEEC-TT
T ss_pred ccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccc----cccc--cccccc-cc
Confidence 6655544333333222232223333 344555 5433 46888998885532221110 0001 112222 34
Q ss_pred CeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCC
Q 012060 281 GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGE 360 (472)
Q Consensus 281 g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~ 360 (472)
+..++.|+. .+.|..||.++++.+.+..-+. . -.+ ++.. -++.+.++|+.++....-|+++-+
T Consensus 195 ~~~~~~~~~------d~~v~i~d~~~~~~~~~~~~~~----~--i~~---l~~~-~~~~~l~~~~~d~~i~i~d~~~~~- 257 (337)
T d1gxra_ 195 GTKLWTGGL------DNTVRSWDLREGRQLQQHDFTS----Q--IFS---LGYC-PTGEWLAVGMESSNVEVLHVNKPD- 257 (337)
T ss_dssp SSEEEEEET------TSEEEEEETTTTEEEEEEECSS----C--EEE---EEEC-TTSSEEEEEETTSCEEEEETTSSC-
T ss_pred ccccccccc------cccccccccccceeeccccccc----c--eEE---EEEc-ccccccceeccccccccccccccc-
Confidence 555566553 3579999999998776554331 0 111 1112 256667788888765443443322
Q ss_pred CCcEEeecCCCCcccCCCCCCCcCeEEE-EECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCce
Q 012060 361 DPWVYMEDKNPSMISSSGNNNGENKLIH-CYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAI 437 (472)
Q Consensus 361 d~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 437 (472)
...... ... .-..++ ..+|+.+++++ +.|.+|+-... +.++.. ...+.|
T Consensus 258 -~~~~~~--------~~~----~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~-------~~~~~~--------~~~~~v 309 (337)
T d1gxra_ 258 -KYQLHL--------HES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-------ASIFQS--------KESSSV 309 (337)
T ss_dssp -EEEECC--------CSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEE--------ECSSCE
T ss_pred -cccccc--------ccc----ccceEEECCCCCEEEEEeCCCeEEEEECCCC-------CEEEEc--------cCCCCE
Confidence 111111 110 011222 23556565543 78999975422 112111 124578
Q ss_pred EEEeecCc-eEEEeeeccceeEEee
Q 012060 438 SRIDAGGN-RLFVSREDVEGIEVWE 461 (472)
Q Consensus 438 ~~~~~gg~-r~f~~~~~~~~~~vw~ 461 (472)
..+++=-| +++++=.+-..|-||+
T Consensus 310 ~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 310 LSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 88887422 4445544556688997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.26 Score=43.44 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=73.1
Q ss_pred cceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCccc
Q 012060 296 SGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMIS 375 (472)
Q Consensus 296 ~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~ 375 (472)
.+.|..||++..+.+.+..... .. . . ....++..++.|+.++....-|++. ...+.. ...
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~----~~---~---~-~~~~~~~~l~s~~~dg~i~~~d~~~-----~~~~~~----~~~ 215 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHT----NR---V---Y-SLQFDGIHVVSGSLDTSIRVWDVET-----GNCIHT----LTG 215 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCS----SC---E---E-EEEECSSEEEEEETTSCEEEEETTT-----CCEEEE----ECC
T ss_pred CCeEEEeecccceeeEEEcCcc----cc---c---c-cccCCCCEEEEEeCCCeEEEeeccc-----ceeeeE----ecc
Confidence 3578999999998777665441 11 1 1 2334677778898887754333332 222222 111
Q ss_pred CCCCCCCcCeEEEEECCEEEEec-CCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeecc
Q 012060 376 SSGNNNGENKLIHCYKNQVFVGR-GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDV 454 (472)
Q Consensus 376 ~~~~~~~~~~~~~~~~g~l~~~~-g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~ 454 (472)
... .-..++..++.|++.. .+.|.+|+....+ . .+.+.+. ......+..+++-++.++..- +-
T Consensus 216 ~~~----~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~--------~-~~~~~~~--~~~~~~~~~~~~~~~~~~s~s-~D 279 (342)
T d2ovrb2 216 HQS----LTSGMELKDNILVSGNADSTVKIWDIKTGQ--------C-LQTLQGP--NKHQSAVTCLQFNKNFVITSS-DD 279 (342)
T ss_dssp CCS----CEEEEEEETTEEEEEETTSCEEEEETTTCC--------E-EEEECST--TSCSSCEEEEEECSSEEEEEE-TT
T ss_pred ccc----ceeEEecCCCEEEEEcCCCEEEEEeccccc--------c-ccccccc--ceeeeceeecccCCCeeEEEc-CC
Confidence 111 2334555555554443 3789999865331 0 1111111 123456888999887665554 45
Q ss_pred ceeEEeecC
Q 012060 455 EGIEVWESS 463 (472)
Q Consensus 455 ~~~~vw~~~ 463 (472)
..|-||+..
T Consensus 280 g~i~iwd~~ 288 (342)
T d2ovrb2 280 GTVKLWDLK 288 (342)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEECC
Confidence 779999853
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.20 E-value=0.2 Score=45.82 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=86.6
Q ss_pred eEEeeccc-CCCCCccccccccceeeee-C-CeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHV-W-SDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS 227 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l-~-~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l 227 (472)
+..|||.. ....+...+...+.++++- + +.+++.|+ .+| .+..||..+.+-.. ........+.+++..
T Consensus 128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs--~d~-----~i~i~d~~~~~~~~--~~~~~~~~i~~v~~~ 198 (311)
T d1nr0a1 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS--DDN-----TVAIFEGPPFKFKS--TFGEHTKFVHSVRYN 198 (311)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TTS-----CEEEEETTTBEEEE--EECCCSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccceeeecccc--ccc-----cccccccccccccc--ccccccccccccccC
Confidence 77888776 4433333343444445443 2 34677777 455 34456665543222 122222223235544
Q ss_pred -CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccc----cccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 228 -PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNM----AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 228 -~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v----~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
++.+++ |+.+ ..|-.||..+.+++..+.... .... +-..+.+.+ ++..+++|+.+ ++|.+
T Consensus 199 p~~~~l~~~~~d----~~v~~~d~~~~~~~~~~~~~~---~~~~~h~~~V~~~~~s~-~~~~l~tgs~D------g~v~i 264 (311)
T d1nr0a1 199 PDGSLFASTGGD----GTIVLYNGVDGTKTGVFEDDS---LKNVAHSGSVFGLTWSP-DGTKIASASAD------KTIKI 264 (311)
T ss_dssp TTSSEEEEEETT----SCEEEEETTTCCEEEECBCTT---SSSCSSSSCEEEEEECT-TSSEEEEEETT------SEEEE
T ss_pred cccccccccccc----ccccccccccccccccccccc---cccccccccccccccCC-CCCEEEEEeCC------CeEEE
Confidence 344555 6544 467889998866554443311 1111 112233333 55666666643 47999
Q ss_pred EcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccc
Q 012060 302 WDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAM 352 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~ 352 (472)
||.++++++-++...- ...... +.+.-.++.|+ .|+.+|...+
T Consensus 265 wd~~t~~~~~~l~~~~--~~~~~~-----~~~~~~~~~l~-s~s~dG~i~~ 307 (311)
T d1nr0a1 265 WNVATLKVEKTIPVGT--RIEDQQ-----LGIIWTKQALV-SISANGFINF 307 (311)
T ss_dssp EETTTTEEEEEEECCS--SGGGCE-----EEEEECSSCEE-EEETTCCEEE
T ss_pred EECCCCcEEEEEECCC--CccceE-----EEEEecCCEEE-EEECCCEEEE
Confidence 9999999776664331 111111 11344466665 5566776543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.09 E-value=0.2 Score=46.56 Aligned_cols=239 Identities=10% Similarity=0.008 Sum_probs=114.4
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccC-CCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDP-SDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~-a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
++.||++-- .. ..+-++||.+.+.... ++.. .+. . +++.. +|.||+ ...+......+..+|+.+.+.
T Consensus 50 ~G~Ly~~D~--~~-----g~I~ri~p~g~~~~~~~~~~~-~~p-~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 50 QGQLFLLDV--FE-----GNIFKINPETKEIKRPFVSHK-ANP-A-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp TSCEEEEET--TT-----CEEEEECTTTCCEEEEEECSS-SSE-E-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCEEEEEC--CC-----CEEEEEECCCCeEEEEEeCCC-CCe-e-EEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 567898854 22 2466789988754332 2211 111 2 46654 678998 322222356788888887431
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
..-+.. .... ....--...-+|.||++..........+.+.++||.... .+..... ...+. |.+ ..
T Consensus 120 ~~~~~~----~~~~-~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~-~~~pn-Gia-----~s 185 (319)
T d2dg1a1 120 QDIIED----LSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQN-ISVAN-GIA-----LS 185 (319)
T ss_dssp EEEECS----SSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEE-ESSEE-EEE-----EC
T ss_pred eeeccC----CCcc-cCCcceeEEeccceeecccccccccCcceeEEEecccce--eEEEeec-cceee-eee-----ec
Confidence 111100 0000 001111234688899975432222235689999998876 3332220 11221 222 35
Q ss_pred ecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEe--cCCeEEEeeccccc
Q 012060 335 VDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVG--RGGSLEVWSRVREG 411 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~--~g~~~~v~~~~~~~ 411 (472)
..++.||+.-...+.....|+..-..-.+..... ........+ .--++++ -+|.||++ +++.|.+|++--.
T Consensus 186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~--~~~~~~~~~---~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~- 259 (319)
T d2dg1a1 186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT--IPYYFTGHE---GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY- 259 (319)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE--EEEECCSSS---EEEEEEEBTTCCEEEEEETTTEEEEECTTSC-
T ss_pred cccceEEEecccCCceEEEEEcCCCceeccccce--eeeccCCcc---ceeeeeEcCCCCEEEEEcCCCEEEEECCCCc-
Confidence 5567788876544433322332111000110000 001111110 1235554 46789998 6799999997411
Q ss_pred cccccCCcceeeccccccccCCCCceEEEeec--CceEEEeeecc
Q 012060 412 RNRSCSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRLFVSREDV 454 (472)
Q Consensus 412 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~ 454 (472)
.+ ++=-+--.+.-....++..+|+ +++||++=.+.
T Consensus 260 -------~l-~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 260 -------PI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp -------EE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred -------EE-EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCC
Confidence 11 2211100011123357777774 57899986553
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.08 E-value=0.43 Score=42.21 Aligned_cols=141 Identities=11% Similarity=0.117 Sum_probs=74.5
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
..+.++++|.. .+.|..||.++++++.+....- ..+-.++.. -++.++++|+.++....-|++.
T Consensus 194 ~~~~~~~~~~~------d~~v~i~d~~~~~~~~~~~~h~--------~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~~- 257 (340)
T d1tbga_ 194 PDTRLFVSGAC------DASAKLWDVREGMCRQTFTGHE--------SDINAICFF-PNGNAFATGSDDATCRLFDLRA- 257 (340)
T ss_dssp TTSSEEEEEET------TTEEEEEETTTTEEEEEECCCS--------SCEEEEEEC-TTSSEEEEEETTSCEEEEETTT-
T ss_pred cccceeEEeec------CceEEEEECCCCcEEEEEeCCC--------CCeEEEEEC-CCCCEEEEEeCCCeEEEEeecc-
Confidence 45666676663 3479999999999888776541 112112222 2677888898887655433332
Q ss_pred CCCCcEEeecCCCCcccCCCCCCCcCe-EEEEE-CCEEEEec--CCeEEEeeccccccccccCCcceeeccccccccCCC
Q 012060 359 GEDPWVYMEDKNPSMISSSGNNNGENK-LIHCY-KNQVFVGR--GGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGR 434 (472)
Q Consensus 359 e~d~W~~~~~~~~~m~~~~~~~~~~~~-~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 434 (472)
...+.... ..... ... .++.. ++++++++ ++.|.+|+-... + . -..+-+ ..
T Consensus 258 ----~~~~~~~~--~~~~~-----~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-------~-~-~~~~~~-----H~ 312 (340)
T d1tbga_ 258 ----DQELMTYS--HDNII-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------D-R-AGVLAG-----HD 312 (340)
T ss_dssp ----TEEEEEEC--CTTCC-----SCEEEEEECSSSCEEEEEETTSCEEEEETTTC-------C-E-EEEECC-----CS
T ss_pred ----cccccccc--ccccc-----CceEEEEECCCCCEEEEEECCCEEEEEECCCC-------c-E-EEEEcC-----CC
Confidence 22221100 00111 111 12221 44555543 488999986422 1 1 111222 24
Q ss_pred CceEEEeec--CceEEEeeeccceeEEee
Q 012060 435 GAISRIDAG--GNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 435 ~~i~~~~~g--g~r~f~~~~~~~~~~vw~ 461 (472)
+.|+.+++- |..|+..= +-..|-||.
T Consensus 313 ~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd 340 (340)
T d1tbga_ 313 NRVSCLGVTDDGMAVATGS-WDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEE-TTSCEEEEC
T ss_pred CCEEEEEEeCCCCEEEEEc-cCCEEEEeC
Confidence 579998884 44554444 445688994
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.46 Score=41.47 Aligned_cols=280 Identities=12% Similarity=0.100 Sum_probs=123.1
Q ss_pred ccccceeeccCCcEEEeee--CceEEeeccc-CCCCCcc---ccccccceeeeeC--CeEEEEcCcCCCCceecceeeee
Q 012060 130 LPSTFTASSDDGSLWIAHG--GQISVYDWNL-SHSVTVR---THLDNITSIRHVW--SDVAAVGSDYSSGIHFYDLSSSR 201 (472)
Q Consensus 130 ~~~a~r~~~~~g~l~va~G--G~Ve~YDW~~-~~m~~~R---~~~~~v~~v~~l~--~~lYavGG~~~~g~~~l~sve~y 201 (472)
.+++++..|. +.++++.+ |.|..||+.. ......+ .+-+.+.++++.. +.+.+.|+ .+| ++..+
T Consensus 13 ~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~--~d~-----~v~~w 84 (342)
T d1yfqa_ 13 YISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT--VQG-----EILKV 84 (342)
T ss_dssp CEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE--TTS-----CEEEE
T ss_pred CEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc--ccc-----ceeee
Confidence 3455666666 44443333 4588888654 2222221 1223455666653 45777777 455 34445
Q ss_pred cCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecC
Q 012060 202 HVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPAT 280 (472)
Q Consensus 202 dp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~ 280 (472)
+.........................++..++ ++. ..++-.||.++.+.....-.. ..................
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNYGDGVIAVKN-LNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET----TSEEEEECHHHHTTBCEEEEE-SCSSSSSSCCCEEEEEEC
T ss_pred eccccccccccccccccccccccccccccccccccc----ccccceeeccccccceeeecc-cccccccceeeeeeeecc
Confidence 54444333322222222222113344444445 433 346778887663311110000 000111111111122334
Q ss_pred CeEEEEEEeCCCccccceEEEEcCCCCeeee--EEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccccc
Q 012060 281 GVVLGSAIAWGAFGYSGYVRMWDPRSGEVVW--ETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 281 g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW--~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
+..++.|.. .+.|..||.++.+... ....+. ....... .....++..+++|+.+|.....++...
T Consensus 160 ~~~~~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 160 SSRLIVGMN------NSQVQWFRLPLCEDDNGTIEESGL--KYQIRDV-----ALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSEEEEEES------TTEEEEEESSCCTTCCCEEEECSC--SSCEEEE-----EECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCceeeecC------CCcEEEEecccCcccceeeeeccc--ccceeee-----EeecCCCCEEEeecCCCeEEEEEecCC
Confidence 445555553 3479999987765322 222221 1111111 112335666777777665432222111
Q ss_pred C-----CCCcEEeecCCCCcccCCCCCCCcCe--EEEEE-CCEEEEecC--CeEEEeeccccccccccCCcceeeccccc
Q 012060 359 G-----EDPWVYMEDKNPSMISSSGNNNGENK--LIHCY-KNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDR 428 (472)
Q Consensus 359 e-----~d~W~~~~~~~~~m~~~~~~~~~~~~--~~~~~-~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~ 428 (472)
. ...+....... ..... + ..+. .|+.. ++.++++++ |.|-||+-.. .+..+. +
T Consensus 227 ~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~--------~~~l~~-~--- 289 (342)
T d1yfqa_ 227 GDDYNSSKRFAFRCHRL--NLKDT-N--LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--------RKKIKN-F--- 289 (342)
T ss_dssp CCSTTCTTCEEEECCCC--CTTCC-S--SCCCEEEEEECTTTCCEEEEETTSCEEEEETTT--------TEEEEE-C---
T ss_pred cceeeccccceeeeeee--ccCCC-c--ccccceeEEecCCccEEEEECCCCEEEEEECCC--------CcEEEE-e---
Confidence 1 11222222111 00111 0 0111 22222 466667655 7899997531 111111 1
Q ss_pred cccCCCCceEEEeecCceEEEeeec
Q 012060 429 VEDSGRGAISRIDAGGNRLFVSRED 453 (472)
Q Consensus 429 ~~~~~~~~i~~~~~gg~r~f~~~~~ 453 (472)
.......++.|+.=|+.|+++=.|
T Consensus 290 -~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 290 -AKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp -CCCSSSEEEEEEECSSEEEEEEEC
T ss_pred -cCCCCCEEEEEEeCCCEEEEEEcC
Confidence 112455789999999999886554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.54 Score=42.77 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=73.0
Q ss_pred eEEeeccc-CCCCCccccccccceeeee--CCeEEEEcCcCCCCceecceeeeecCCCCcc-ccCCCCcCcccceeEEEE
Q 012060 151 ISVYDWNL-SHSVTVRTHLDNITSIRHV--WSDVAAVGSDYSSGIHFYDLSSSRHVASAHW-TDPSDPRIYRATVTAIAD 226 (472)
Q Consensus 151 Ve~YDW~~-~~m~~~R~~~~~v~~v~~l--~~~lYavGG~~~~g~~~l~sve~ydp~t~~W-~~~a~m~~~R~~~~ava~ 226 (472)
+..++|.. ........+-..+.++++- ++.+++.|| .+| .+-.||..+.+- ............+.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~-----~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDG-----SVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 213 (325)
T ss_dssp EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE--TTT-----EEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred EEEEeecccccceeeeecccccccccccccccceEEEee--ccc-----ccccccccccccceecccccCCCCccEEeee
Confidence 77788865 3333333333333344432 234566676 455 233455433221 111222222233333555
Q ss_pred e--CCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 227 S--PTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 227 l--~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
. .+.++| |+.+ ..|-.||.++.+++..+.... ..+..........++.++++|+.+ ++|.+||
T Consensus 214 ~pd~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~~~~----~~v~~~~~s~~~~dg~~l~s~s~D------~~i~iwd 279 (325)
T d1pgua1 214 SPDSGEFVITVGSD----RKISCFDGKSGEFLKYIEDDQ----EPVQGGIFALSWLDSQKFATVGAD------ATIRVWD 279 (325)
T ss_dssp CSTTCCEEEEEETT----CCEEEEETTTCCEEEECCBTT----BCCCSCEEEEEESSSSEEEEEETT------SEEEEEE
T ss_pred ccccceeccccccc----cceeeeeeccccccccccccc----cccccceeeeeccCCCEEEEEeCC------CeEEEEE
Confidence 4 245666 6554 368899999977555543211 011111111111466677777643 4799999
Q ss_pred CCCCeeeeEEcCC
Q 012060 304 PRSGEVVWETNEP 316 (472)
Q Consensus 304 p~~~~~vW~~~~~ 316 (472)
.++++++-++...
T Consensus 280 ~~~~~~~~~~~~~ 292 (325)
T d1pgua1 280 VTTSKCVQKWTLD 292 (325)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCCCCEEEEEEec
Confidence 9999977555433
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.13 E-value=0.48 Score=43.93 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=97.1
Q ss_pred EEEe-CCeEEE-EecCCCCCceeEEEeCCCcc--cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceE
Q 012060 224 IADS-PTTVFS-SLVCPHKENSVLLIDKSTLQ--ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYV 299 (472)
Q Consensus 224 va~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~--~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sv 299 (472)
++.. ++.+.| |+.+ ..|-.||..+.+ .+..+. -+..+-..+.+.+ ++.+.++|+.+ +.|
T Consensus 13 ~~~s~dg~~la~~~~~----~~i~iw~~~~~~~~~~~~l~------gH~~~V~~l~fsp-~~~~l~s~s~D------~~i 75 (371)
T d1k8kc_ 13 HAWNKDRTQIAICPNN----HEVHIYEKSGNKWVQVHELK------EHNGQVTGVDWAP-DSNRIVTCGTD------RNA 75 (371)
T ss_dssp EEECTTSSEEEEECSS----SEEEEEEEETTEEEEEEEEE------CCSSCEEEEEEET-TTTEEEEEETT------SCE
T ss_pred EEECCCCCEEEEEeCC----CEEEEEECCCCCEEEEEEec------CCCCCEEEEEECC-CCCEEEEEECC------CeE
Confidence 4443 445555 5433 368889987743 111110 0011123344555 44555666643 469
Q ss_pred EEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC--CCCcEEeecCCCCcccCC
Q 012060 300 RMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG--EDPWVYMEDKNPSMISSS 377 (472)
Q Consensus 300 e~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~~ 377 (472)
..||+++++ |+..-.. ....+.-.+ ++... ++..+++|+.++.... -.++ .+.|..... ...-+
T Consensus 76 ~vWd~~~~~--~~~~~~~-~~~~~~v~~---i~~~p-~~~~l~~~s~d~~i~i---~~~~~~~~~~~~~~~----~~~~~ 141 (371)
T d1k8kc_ 76 YVWTLKGRT--WKPTLVI-LRINRAARC---VRWAP-NEKKFAVGSGSRVISI---CYFEQENDWWVCKHI----KKPIR 141 (371)
T ss_dssp EEEEEETTE--EEEEEEC-CCCSSCEEE---EEECT-TSSEEEEEETTSSEEE---EEEETTTTEEEEEEE----CTTCC
T ss_pred EEEeecccc--ccccccc-ccccccccc---ccccc-ccccceeecccCccee---eeeeccccccccccc----ccccc
Confidence 999999998 7654321 011111222 22233 5667778887766442 2222 333443332 11111
Q ss_pred CCCCCcCeEEEEE-CCEEEEec--CCeEEEeecccccccc--c---cCCcceeeccccccccCCCCceEEEeec--CceE
Q 012060 378 GNNNGENKLIHCY-KNQVFVGR--GGSLEVWSRVREGRNR--S---CSEGLFRRNFVDRVEDSGRGAISRIDAG--GNRL 447 (472)
Q Consensus 378 ~~~~~~~~~~~~~-~g~l~~~~--g~~~~v~~~~~~~~~~--~---~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~ 447 (472)
. .-..++.. +++.++++ .+.|.+|+........ . .....-....+- ......+.|..+++- |++|
T Consensus 142 ~----~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l 216 (371)
T d1k8kc_ 142 S----TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSCGWVHGVCFSANGSRV 216 (371)
T ss_dssp S----CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCSSCEEEEEECSSSSEE
T ss_pred c----ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee-eccCccCcEEEEEeecccccc
Confidence 1 01122222 56777764 4899999875331000 0 000000000000 111345678887774 5666
Q ss_pred EEeeeccceeEEeecCC
Q 012060 448 FVSREDVEGIEVWESSN 464 (472)
Q Consensus 448 f~~~~~~~~~~vw~~~~ 464 (472)
+.. .+...|.||+...
T Consensus 217 ~s~-~~d~~i~iwd~~~ 232 (371)
T d1k8kc_ 217 AWV-SHDSTVCLADADK 232 (371)
T ss_dssp EEE-ETTTEEEEEEGGG
T ss_pred ccc-ccCCcceEEeeec
Confidence 544 4557799998644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.83 Score=38.85 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=76.1
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWD 303 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yD 303 (472)
.......++.++.+ .++..||+.+.+++..+.. ..........++..+++|+.+ ++|..||
T Consensus 144 ~~~~~~~~~~~s~d----~~i~~~d~~~~~~~~~~~~---------~~~~v~~~~~~~~~l~~~~~d------g~i~i~d 204 (293)
T d1p22a2 144 VDFDDKYIVSASGD----RTIKVWNTSTCEFVRTLNG---------HKRGIACLQYRDRLVVSGSSD------NTIRLWD 204 (293)
T ss_dssp EEEETTEEEEEETT----SEEEEEETTTCCEEEEEEC---------CSSCEEEEEEETTEEEEEETT------SCEEEEE
T ss_pred ceecccccccccCC----CceeeecCCCCcEEEEEcc---------cccccccccCCCCeEEEecCC------CEEEEEe
Confidence 34445555554333 4788999998664433322 011122233345556666644 4689999
Q ss_pred CCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccC----CCCcEEeecCCCCcccCCCC
Q 012060 304 PRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG----EDPWVYMEDKNPSMISSSGN 379 (472)
Q Consensus 304 p~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e----~d~W~~~~~~~~~m~~~~~~ 379 (472)
+++.+.+....... .. +.....++..++.|+.+|....-|+++.. ...+..+.. +.....
T Consensus 205 ~~~~~~~~~~~~~~--------~~---v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~H~~- 268 (293)
T d1p22a2 205 IECGACLRVLEGHE--------EL---VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT----LVEHSG- 268 (293)
T ss_dssp TTTCCEEEEECCCS--------SC---EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE----ECCCSS-
T ss_pred cccceeeeeecccc--------ee---eeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEE----ecCCCC-
Confidence 99999776665441 11 11234466777888888876543444322 222333332 222111
Q ss_pred CCCcCeEEEEECCEEEEecC--CeEEEee
Q 012060 380 NNGENKLIHCYKNQVFVGRG--GSLEVWS 406 (472)
Q Consensus 380 ~~~~~~~~~~~~g~l~~~~g--~~~~v~~ 406 (472)
. . ..++. +++.+++++ +.|-+|+
T Consensus 269 -~-V-~~v~~-d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 269 -R-V-FRLQF-DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp -C-C-CCEEE-CSSCEEECCSSSEEEEEC
T ss_pred -C-E-EEEEE-cCCEEEEEecCCEEEEeC
Confidence 0 1 12333 555556654 7799995
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.41 Score=43.73 Aligned_cols=193 Identities=14% Similarity=0.129 Sum_probs=76.6
Q ss_pred CcEEEeee--CceEEeeccc-CCCCCccccccccceeee-eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcC
Q 012060 141 GSLWIAHG--GQISVYDWNL-SHSVTVRTHLDNITSIRH-VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRI 216 (472)
Q Consensus 141 g~l~va~G--G~Ve~YDW~~-~~m~~~R~~~~~v~~v~~-l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~ 216 (472)
+.++++.+ |.|..||+.. ......+.+...+.+++. -++...+.|+ .++ .+..+|..+..-........
T Consensus 133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--~~~-----~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDR-----TVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEEEEEECSS
T ss_pred CCcceecccccccccccccccccccccccccccccccccccccccccccc--cce-----eeeeeecccccccccccccc
Confidence 44443333 3588888443 222222222222223333 2344555655 333 34456655544332222222
Q ss_pred cccceeEEEE--eCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCC-CcccccccceeEEecCCeEEEEEEeCCC
Q 012060 217 YRATVTAIAD--SPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGA-SSKNMAVGKLTWIPATGVVLGSAIAWGA 292 (472)
Q Consensus 217 ~R~~~~ava~--l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~-~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~ 292 (472)
.... ++. .++.+++ |+.+ ..+-.||..+.+.+..+...... .-+.-+-..+.+.+ ++.++++|+.
T Consensus 206 ~~~~---~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~--- 274 (388)
T d1erja_ 206 GVTT---VAVSPGDGKYIAAGSLD----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSL--- 274 (388)
T ss_dssp CEEE---EEECSTTCCEEEEEETT----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEET---
T ss_pred cccc---ccccCCCCCeEEEEcCC----CeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEEC---
Confidence 2211 232 2445555 6544 35778888875543333221100 00000112223333 5556666663
Q ss_pred ccccceEEEEcCCCCeeeeEEcCCCCCCCC--cc--cccccceeeeecCCeEEEEcccCCCcccccc
Q 012060 293 FGYSGYVRMWDPRSGEVVWETNEPGSGRSA--RF--GDSFADVDVDVDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 293 ~~~~~sve~yDp~~~~~vW~~~~~~~~~~~--R~--~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl 355 (472)
.+.|..||.++.+.......+...... .. ...+..++... ++.+.+.|+.+|....-|+
T Consensus 275 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~ 337 (388)
T d1erja_ 275 ---DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDK 337 (388)
T ss_dssp ---TSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEET
T ss_pred ---CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEEC
Confidence 347999998887633333222100000 00 01111122222 5566677888876543333
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.95 E-value=0.91 Score=39.79 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=70.4
Q ss_pred cCCeEEEEEEeCCCccccceEEEEcCCCCeeee-EEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccc
Q 012060 279 ATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVW-ETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRN 357 (472)
Q Consensus 279 ~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW-~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s 357 (472)
-++.++++|+. .+.|..||.+++++.- ..... ...+..++... ++..+++|+.++....-|+++
T Consensus 146 ~~~~~l~~g~~------dg~i~~~d~~~~~~~~~~~~~~--------~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~ 210 (299)
T d1nr0a2 146 NDKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIVH--------PAEITSVAFSN-NGAFLVATDQSRKVIPYSVAN 210 (299)
T ss_dssp TTSCEEEEEET------TSEEEEEEEETTEEEEEEEEEC--------SSCEEEEEECT-TSSEEEEEETTSCEEEEEGGG
T ss_pred ccccccccccc------cccccccccccccccccccccc--------ccccccccccc-ccccccccccccccccccccc
Confidence 35666777763 3479999999887321 11111 01121222233 556677788777644323322
Q ss_pred cCCCCcE-EeecCCCCcccCCCCCCCcCe-EEE-EECCEEEEecC--CeEEEeeccccccccccCCcceeeccccccccC
Q 012060 358 LGEDPWV-YMEDKNPSMISSSGNNNGENK-LIH-CYKNQVFVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDS 432 (472)
Q Consensus 358 ~e~d~W~-~~~~~~~~m~~~~~~~~~~~~-~~~-~~~g~l~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 432 (472)
+... .... +.... ... .++ .-+++.+++++ +.|.+|+-... . ...++.. . ..
T Consensus 211 ---~~~~~~~~~----~~~h~-----~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~----~-~~~~~~~----~--~~ 267 (299)
T d1nr0a2 211 ---NFELAHTNS----WTFHT-----AKVACVSWSPDNVRLATGSLDNSVIVWNMNKP----S-DHPIIIK----G--AH 267 (299)
T ss_dssp ---TTEESCCCC----CCCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTCT----T-SCCEEET----T--SS
T ss_pred ---ccccccccc----ccccc-----cccccccccccccceEEEcCCCEEEEEECCCC----C-cceEEEe----c--CC
Confidence 1111 1111 11111 111 122 23566666543 89999975322 0 0111111 0 01
Q ss_pred CCCceEEEeecCceEEEeeeccceeEEeecC
Q 012060 433 GRGAISRIDAGGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 433 ~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 463 (472)
....|+.+.+--++++++=.+-..|-+|+=|
T Consensus 268 ~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 268 AMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 2335666555444556665666789999843
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=1.1 Score=39.28 Aligned_cols=112 Identities=6% Similarity=-0.053 Sum_probs=55.6
Q ss_pred eeeCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEE-EecCCCCCceeEEEeCCCcc
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFS-SLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~ 253 (472)
...++.+.+.|+ .+| ++-.||..+.+- +..+......+.+++..++.+++ |+.+ .+|-.||..+.+
T Consensus 19 ~~~~~~~l~tgs--~Dg-----~i~vWd~~~~~~--~~~l~~H~~~V~~l~~s~~~~l~s~s~D----~~i~iw~~~~~~ 85 (355)
T d1nexb2 19 LQFEDNYVITGA--DDK-----MIRVYDSINKKF--LLQLSGHDGGVWALKYAHGGILVSGSTD----RTVRVWDIKKGC 85 (355)
T ss_dssp EEEETTEEEEEE--TTT-----EEEEEETTTTEE--EEEEECCSSCEEEEEEETTTEEEEEETT----CCEEEEETTTTE
T ss_pred EEECCCEEEEEe--CCC-----eEEEEECCCCcE--EEEEECCCCCEEEEEEcCCCEEEEEecc----cccccccccccc
Confidence 345777788888 555 466677765542 22222222333346666655455 6554 367788888744
Q ss_pred cccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeee
Q 012060 254 ISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVV 310 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~v 310 (472)
......... .... ........++...+.|+. .+.|..||.+++..+
T Consensus 86 ~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~------d~~i~iw~~~~~~~~ 131 (355)
T d1nexb2 86 CTHVFEGHN----STVR-CLDIVEYKNIKYIVTGSR------DNTLHVWKLPKESSV 131 (355)
T ss_dssp EEEEECCCS----SCEE-EEEEEEETTEEEEEEEET------TSEEEEEECCC----
T ss_pred ccccccccc----cccc-ccccccccccceeeeecC------CCcEEEEEccCCcee
Confidence 222111100 0000 001111234555566653 347999999887644
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.67 E-value=0.4 Score=44.08 Aligned_cols=199 Identities=15% Similarity=0.055 Sum_probs=97.0
Q ss_pred eeeeecCCCCccccCCCCcCcccceeEEE-EeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc----
Q 012060 197 LSSSRHVASAHWTDPSDPRIYRATVTAIA-DSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV---- 271 (472)
Q Consensus 197 sve~ydp~t~~W~~~a~m~~~R~~~~ava-~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~---- 271 (472)
.+.++||.+.+-... ++... .+ +++ .-+|.|+++. .+.+-+|||.+.+ .+.++.
T Consensus 41 ~I~r~d~~~g~~~~~-~~~~~-~~--~i~~~~dg~l~va~-----~~gl~~~d~~tg~------------~~~l~~~~~~ 99 (295)
T d2ghsa1 41 ELHELHLASGRKTVH-ALPFM-GS--ALAKISDSKQLIAS-----DDGLFLRDTATGV------------LTLHAELESD 99 (295)
T ss_dssp EEEEEETTTTEEEEE-ECSSC-EE--EEEEEETTEEEEEE-----TTEEEEEETTTCC------------EEEEECSSTT
T ss_pred EEEEEECCCCeEEEE-ECCCC-cE--EEEEecCCCEEEEE-----eCccEEeecccce------------eeEEeeeecC
Confidence 566788887653322 22221 12 233 3456677642 2468899999943 332211
Q ss_pred ccee-----EEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEccc
Q 012060 272 GKLT-----WIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSK 346 (472)
Q Consensus 272 m~~~-----~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~ 346 (472)
.+.. ...-+|.||++....... ...-..|....++ -+..... .. .--+.++ ...+..+|++-..
T Consensus 100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~--~~~g~l~~~~~g~--~~~~~~~-~~-~~Ng~~~-----s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 100 LPGNRSNDGRMHPSGALWIGTMGRKAE--TGAGSIYHVAKGK--VTKLFAD-IS-IPNSICF-----SPDGTTGYFVDTK 168 (295)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCC--TTCEEEEEEETTE--EEEEEEE-ES-SEEEEEE-----CTTSCEEEEEETT
T ss_pred CCcccceeeEECCCCCEEEEecccccc--ccceeEeeecCCc--EEEEeec-cC-Ccceeee-----cCCCceEEEeecc
Confidence 1111 123688899876654432 2233344444565 2222220 01 1113332 4556667776554
Q ss_pred CCCccccccc--ccC-CCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEEEEe--cCCeEEEeeccccccccccCCcc
Q 012060 347 SGDIAMADLR--NLG-EDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQVFVG--RGGSLEVWSRVREGRNRSCSEGL 420 (472)
Q Consensus 347 ~g~~~~~dl~--s~e-~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l~~~--~g~~~~v~~~~~~~~~~~~~~~~ 420 (472)
.+.....++. ... .++...... ..... + .--++++ -+|.||++ +++.|.+|++.- + +
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~----~~~~~-g---~pdG~~vD~~GnlWva~~~~g~V~~~dp~G--------~-~ 231 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFID----STGIK-G---GMDGSVCDAEGHIWNARWGEGAVDRYDTDG--------N-H 231 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEE----CTTSS-S---EEEEEEECTTSCEEEEEETTTEEEEECTTC--------C-E
T ss_pred cceeeEeeecccccccccceEEEec----cCccc-c---cccceEEcCCCCEEeeeeCCCceEEecCCC--------c-E
Confidence 4332221221 111 222222222 11111 1 2344544 46789999 688999999731 1 1
Q ss_pred eeeccccccccCCCCceEEEeecC---ceEEEe
Q 012060 421 FRRNFVDRVEDSGRGAISRIDAGG---NRLFVS 450 (472)
Q Consensus 421 ~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~ 450 (472)
.++ .+-. .-.+|+.+||| ++||||
T Consensus 232 ~~~-----i~lP-~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 232 IAR-----YEVP-GKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEE-----EECS-CSBEEEEEEESTTSCEEEEE
T ss_pred eeE-----ecCC-CCceEEEEEeCCCCCEEEEE
Confidence 122 1111 22699999998 789998
|
| >d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.016 Score=45.83 Aligned_cols=82 Identities=21% Similarity=0.140 Sum_probs=56.8
Q ss_pred CCcEEEEE-CCeEEEEeHHHhhccCCCCccccccCCC-CCCCCCE-EEcCChhhHHHHhhccccCc---------ccCCC
Q 012060 15 GDRVKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ-SDEPNPI-FIDRDPDVFSVLLSLLRSNR---------LPSTA 82 (472)
Q Consensus 15 ~~~V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~-~~~~~~v-fiDrdp~~F~~IL~flrtg~---------l~~~~ 82 (472)
++.|+|.- +|..|.+.+.+... |..++.|+... ...+..+ +.++++.+|+.|++|++.-. -.+++
T Consensus 3 ~~~v~L~SsDg~~f~V~~~~A~~---S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~e 79 (99)
T d1hv2a_ 3 QDFVTLVSKDDKEYEISRSAAMI---SPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE 79 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHHHTT---CHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCC
T ss_pred CCeEEEEcCCCCEEEeeHHHHHH---hHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCC
Confidence 45677866 77899999999655 77999998653 2334456 44899999999999995311 01111
Q ss_pred ---CCcchHHHHhhhhhcCc
Q 012060 83 ---SRFSKQELADEALYYGI 99 (472)
Q Consensus 83 ---~~~~v~~Ll~eA~~~ql 99 (472)
+....-+|+.+|+|++|
T Consensus 80 fdvd~~~l~eLi~AAnyLdI 99 (99)
T d1hv2a_ 80 FEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHhhhCC
Confidence 11335678889999876
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.43 E-value=0.18 Score=44.97 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGR 320 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~ 320 (472)
-+.|.+||..+.+.+.+|.... ....|......+-+..|||+|. ..+.|..||..+++++++...+.
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~----~~~~~~~i~~spDg~~l~v~~~------~~~~v~v~D~~t~~~~~~~~~~~--- 76 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIAD----AGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLST--- 76 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTT----CTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECCB---
T ss_pred CCEEEEEECCCCeEEEEEECCC----CCCCccEEEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEEEecCC---
Confidence 3688999999988776664421 1112334444444556888764 23579999999999888776652
Q ss_pred CCcccccccceeeeecCCeEEEEcc
Q 012060 321 SARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 321 ~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
....+....+++....+..+|+.+.
T Consensus 77 ~~~~~~~~~~v~~s~dg~~l~~~~~ 101 (337)
T d1pbyb_ 77 PEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred CcccccceeeEEEcCCCcEEEEeec
Confidence 1122222334455676777776654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=94.29 E-value=0.54 Score=40.95 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=54.7
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
++|+.... -++|-+||++|.+.+.+|... . .|..+...+-+..||+++.. .+.|..||..+++.
T Consensus 3 ~~yV~~~~---~~~v~v~D~~t~~~~~~i~~g---~----~p~~va~spdG~~l~v~~~~------~~~i~v~d~~t~~~ 66 (301)
T d1l0qa2 3 FAYIANSE---SDNISVIDVTSNKVTATIPVG---S----NPMGAVISPDGTKVYVANAH------SNDVSIIDTATNNV 66 (301)
T ss_dssp EEEEEETT---TTEEEEEETTTTEEEEEEECS---S----SEEEEEECTTSSEEEEEEGG------GTEEEEEETTTTEE
T ss_pred EEEEEECC---CCEEEEEECCCCeEEEEEECC---C----CceEEEEeCCCCEEEEEECC------CCEEEEEECCCCce
Confidence 67873221 357999999997766655431 0 12223333445668887652 35799999999997
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccC
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKS 347 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~ 347 (472)
+.+.... ..++ .++....+..+|+.+..+
T Consensus 67 ~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~ 95 (301)
T d1l0qa2 67 IATVPAG---SSPQ------GVAVSPDGKQVYVTNMAS 95 (301)
T ss_dssp EEEEECS---SSEE------EEEECTTSSEEEEEETTT
T ss_pred eeeeecc---cccc------cccccccccccccccccc
Confidence 7776544 2222 122355455666555443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.06 E-value=0.42 Score=44.37 Aligned_cols=152 Identities=9% Similarity=0.021 Sum_probs=74.8
Q ss_pred eCCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCccc
Q 012060 177 VWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQI 254 (472)
Q Consensus 177 l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~ 254 (472)
-++.++|+|+ .+| .+..||..++++..+..+......+.+++.. ++.+.| |+.+ .+|-.||+.+.+.
T Consensus 17 ~dg~~la~~~--~~~-----~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D----~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 17 KDRTQIAICP--NNH-----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD----RNAYVWTLKGRTW 85 (371)
T ss_dssp TTSSEEEEEC--SSS-----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT----SCEEEEEEETTEE
T ss_pred CCCCEEEEEe--CCC-----EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC----CeEEEEeeccccc
Confidence 3677788887 444 4556777777777666554333344446655 444445 6554 3688899887431
Q ss_pred ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 255 SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 255 ~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
...+... -..-+.....|.+ ++..+++|+.++ .+..|+.......|...... ..-+ ..+..++..
T Consensus 86 ~~~~~~~----~~~~~v~~i~~~p-~~~~l~~~s~d~------~i~i~~~~~~~~~~~~~~~~--~~~~--~~v~~v~~~ 150 (371)
T d1k8kc_ 86 KPTLVIL----RINRAARCVRWAP-NEKKFAVGSGSR------VISICYFEQENDWWVCKHIK--KPIR--STVLSLDWH 150 (371)
T ss_dssp EEEEECC----CCSSCEEEEEECT-TSSEEEEEETTS------SEEEEEEETTTTEEEEEEEC--TTCC--SCEEEEEEC
T ss_pred ccccccc----ccccccccccccc-ccccceeecccC------cceeeeeecccccccccccc--cccc--ccccccccc
Confidence 1110000 0000112233444 444555555333 46666554443225544321 1111 111111122
Q ss_pred ecCCeEEEEcccCCCcccccc
Q 012060 335 VDELTLFKICSKSGDIAMADL 355 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~~~~dl 355 (472)
-++.+++.|+.++....-|+
T Consensus 151 -p~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 151 -PNSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp -TTSSEEEEEETTSCEEEEEC
T ss_pred -ccccceeccccCcEEEEEee
Confidence 26778889998876544333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.71 E-value=1.7 Score=37.44 Aligned_cols=161 Identities=10% Similarity=-0.024 Sum_probs=72.1
Q ss_pred eeeee-CCeEEEEcCcCCCCceecceeeeecCCCCc-cccCCCCcCcccceeEEEEe--CCeEEE-EecCCCCCceeEEE
Q 012060 173 SIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAH-WTDPSDPRIYRATVTAIADS--PTTVFS-SLVCPHKENSVLLI 247 (472)
Q Consensus 173 ~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~-W~~~a~m~~~R~~~~ava~l--~g~IYA-Gg~~~~~l~sVE~Y 247 (472)
++++- ++.+.|+|+ .+| ++-.||..+.. ...+.........+.+++.. ++.+.+ |+.+ ..|-.|
T Consensus 16 ~l~fsp~~~~L~s~s--~Dg-----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----~~v~~w 84 (342)
T d1yfqa_ 16 DIKIIPSKSLLLITS--WDG-----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----GEILKV 84 (342)
T ss_dssp EEEEEGGGTEEEEEE--TTS-----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----SCEEEE
T ss_pred EEEEeCCCCEEEEEE--CCC-----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc----cceeee
Confidence 44443 566677777 565 44555543321 11111111112223235554 344455 6554 368889
Q ss_pred eCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCccccc
Q 012060 248 DKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDS 327 (472)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~ 327 (472)
|..+.+....... ..... ........+...++.++ ..+++..||+++.........+...... ...
T Consensus 85 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~wd~~~~~~~~~~~~~~~~~~~--~~~ 150 (342)
T d1yfqa_ 85 DLIGSPSFQALTN-----NEANL-GICRICKYGDDKLIAAS------WDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVK 150 (342)
T ss_dssp CSSSSSSEEECBS-----CCCCS-CEEEEEEETTTEEEEEE------TTSEEEEECHHHHTTBCEEEEESCSSSS--SSC
T ss_pred ecccccccccccc-----ccccc-ccccccccccccccccc------cccccceeeccccccceeeecccccccc--cce
Confidence 9887442221111 00000 11111223444445544 2457999998776544444433111111 111
Q ss_pred ccceeeeecCCeEEEEcccCCCcccccccccC
Q 012060 328 FADVDVDVDELTLFKICSKSGDIAMADLRNLG 359 (472)
Q Consensus 328 ~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e 359 (472)
...+ .....+..+++|+.++....-|++..+
T Consensus 151 ~~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~ 181 (342)
T d1yfqa_ 151 NKIF-TMDTNSSRLIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp CCEE-EEEECSSEEEEEESTTEEEEEESSCCT
T ss_pred eeee-eeeccCCceeeecCCCcEEEEecccCc
Confidence 0011 233466677788877765544555444
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.70 E-value=0.47 Score=41.93 Aligned_cols=139 Identities=10% Similarity=-0.007 Sum_probs=71.1
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~ 255 (472)
.+.+++.|+ .++ .+..||..+.+-. ..+......+.+++.. ++.++| |+.+ ..|-.||..+.+++
T Consensus 195 ~~~~~~~~~--~d~-----~v~i~d~~~~~~~--~~~~~h~~~i~~v~~~p~~~~l~s~s~d----~~i~~~~~~~~~~~ 261 (340)
T d1tbga_ 195 DTRLFVSGA--CDA-----SAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDD----ATCRLFDLRADQEL 261 (340)
T ss_dssp TSSEEEEEE--TTT-----EEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEE
T ss_pred ccceeEEee--cCc-----eEEEEECCCCcEE--EEEeCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeecccccc
Confidence 455666666 344 3455665544311 1111112233235544 344555 6544 35778998885543
Q ss_pred cccccccCCCcccccc-cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeee
Q 012060 256 SEIGRQSGASSKNMAV-GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVD 334 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~-m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~ 334 (472)
..+.. .....+ ..+.+. -++.+.++|+.+ +.|..||.++++.+-++... ...+.+++..
T Consensus 262 ~~~~~-----~~~~~~i~~~~~s-~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~H--------~~~V~~l~~s 321 (340)
T d1tbga_ 262 MTYSH-----DNIICGITSVSFS-KSGRLLLAGYDD------FNCNVWDALKADRAGVLAGH--------DNRVSCLGVT 321 (340)
T ss_dssp EEECC-----TTCCSCEEEEEEC-SSSCEEEEEETT------SCEEEEETTTCCEEEEECCC--------SSCEEEEEEC
T ss_pred ccccc-----ccccCceEEEEEC-CCCCEEEEEECC------CEEEEEECCCCcEEEEEcCC--------CCCEEEEEEe
Confidence 33322 111111 122232 355566666644 46999999999877666543 1122233333
Q ss_pred ecCCeEEEEcccCCCc
Q 012060 335 VDELTLFKICSKSGDI 350 (472)
Q Consensus 335 ~~~~~iy~vGg~~g~~ 350 (472)
. ++.+++.||.|+.+
T Consensus 322 ~-d~~~l~s~s~Dg~v 336 (340)
T d1tbga_ 322 D-DGMAVATGSWDSFL 336 (340)
T ss_dssp T-TSSCEEEEETTSCE
T ss_pred C-CCCEEEEEccCCEE
Confidence 3 55666788888653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=1.5 Score=39.73 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=74.2
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeCC-e-EEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSPT-T-VFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g-~-IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.+.+.|+ .+| ++..+|..+.+...... .....+.+++.... . ++.|.. ...+..||..+.+..
T Consensus 132 ~~~~l~s~~--~dg-----~v~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~ 198 (388)
T d1erja_ 132 DGKFLATGA--EDR-----LIRIWDIENRKIVMILQ--GHEQDIYSLDYFPSGDKLVSGSG----DRTVRIWDLRTGQCS 198 (388)
T ss_dssp TSSEEEEEE--TTS-----CEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred CCCcceecc--ccc-----ccccccccccccccccc--ccccccccccccccccccccccc----ceeeeeeeccccccc
Confidence 566777787 455 34556665554433221 11122222343332 3 333533 346888999884422
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeee
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDV 335 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~ 335 (472)
..... .. ......+...++.++++|+.+ +.|..||.+++..+++...+....... ...+-.++...
T Consensus 199 ~~~~~---~~----~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~ 264 (388)
T d1erja_ 199 LTLSI---ED----GVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTR 264 (388)
T ss_dssp EEEEC---SS----CEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECT
T ss_pred ccccc---cc----ccccccccCCCCCeEEEEcCC------CeEEEeecccCccceeeccccccccCC-CCCEEEEEECC
Confidence 21111 00 011222334677777877744 468999999998776665442111100 11121222222
Q ss_pred cCCeEEEEcccCCCccccccccc
Q 012060 336 DELTLFKICSKSGDIAMADLRNL 358 (472)
Q Consensus 336 ~~~~iy~vGg~~g~~~~~dl~s~ 358 (472)
++.++++|+.++....-|++..
T Consensus 265 -~~~~l~s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 265 -DGQSVVSGSLDRSVKLWNLQNA 286 (388)
T ss_dssp -TSSEEEEEETTSEEEEEEC---
T ss_pred -CCCEEEEEECCCcEEEEeccCC
Confidence 5667788888876554455543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=2.5 Score=37.95 Aligned_cols=186 Identities=11% Similarity=0.097 Sum_probs=90.2
Q ss_pred EEEEe-CCeEEE-EecCCCCCceeEEEeCCCccc--ccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccce
Q 012060 223 AIADS-PTTVFS-SLVCPHKENSVLLIDKSTLQI--SSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGY 298 (472)
Q Consensus 223 ava~l-~g~IYA-Gg~~~~~l~sVE~YDp~t~~~--~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~s 298 (472)
+++.. ++...| |+.+ .+|..||....++ ..++.. . ..+.......-++.++++++. ...
T Consensus 102 ~v~~s~dg~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~---~----~~~v~~~~~~~~~~~l~s~~~------d~~ 164 (337)
T d1gxra_ 102 SCKLLPDGCTLIVGGEA----STLSIWDLAAPTPRIKAELTS---S----APACYALAISPDSKVCFSCCS------DGN 164 (337)
T ss_dssp EEEECTTSSEEEEEESS----SEEEEEECCCC--EEEEEEEC---S----SSCEEEEEECTTSSEEEEEET------TSC
T ss_pred EEEEcCCCCEEEEeecc----ccccccccccccccccccccc---c----ccccccccccccccccccccc------ccc
Confidence 35555 444444 6554 4788999876331 011000 0 001111112245666666653 346
Q ss_pred EEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCC
Q 012060 299 VRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSG 378 (472)
Q Consensus 299 ve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~ 378 (472)
|..||.+++++....... ...+..++.. .++..+++|+.++....-|+++- ..+.. ......
T Consensus 165 i~~~~~~~~~~~~~~~~~--------~~~v~~l~~s-~~~~~~~~~~~d~~v~i~d~~~~-----~~~~~----~~~~~~ 226 (337)
T d1gxra_ 165 IAVWDLHNQTLVRQFQGH--------TDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREG-----RQLQQ----HDFTSQ 226 (337)
T ss_dssp EEEEETTTTEEEEEECCC--------SSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT-----EEEEE----EECSSC
T ss_pred cccccccccccccccccc--------cccccccccc-ccccccccccccccccccccccc-----eeecc----cccccc
Confidence 999999999866555543 1112122222 35667778888876543344322 12221 111110
Q ss_pred CCCCcCeEEEE-ECCEEEEe--cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeec
Q 012060 379 NNNGENKLIHC-YKNQVFVG--RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSRED 453 (472)
Q Consensus 379 ~~~~~~~~~~~-~~g~l~~~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~ 453 (472)
=..++. -+++.+++ .++.|.+|+--.. + .+.. . ...+.|+.+.+ -|..|+..-.|
T Consensus 227 -----i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-------~-~~~~--~-----~~~~~i~~v~~s~~g~~l~s~s~D 286 (337)
T d1gxra_ 227 -----IFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------D-KYQL--H-----LHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp -----EEEEEECTTSSEEEEEETTSCEEEEETTSS-------C-EEEE--C-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred -----eEEEEEcccccccceecccccccccccccc-------c-cccc--c-----ccccccceEEECCCCCEEEEEeCC
Confidence 011221 13444443 4488999976311 1 1111 1 13456888877 45555555444
Q ss_pred cceeEEeecCC
Q 012060 454 VEGIEVWESSN 464 (472)
Q Consensus 454 ~~~~~vw~~~~ 464 (472)
..|-||+...
T Consensus 287 -g~i~iwd~~~ 296 (337)
T d1gxra_ 287 -NLLNAWRTPY 296 (337)
T ss_dssp -SEEEEEETTT
T ss_pred -CeEEEEECCC
Confidence 6799998654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=2.7 Score=37.70 Aligned_cols=185 Identities=11% Similarity=0.079 Sum_probs=87.4
Q ss_pred CceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCC
Q 012060 241 ENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGR 320 (472)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~ 320 (472)
.+.+-.|+..+.+.+.++..+ ...-....+.+.+..+.++++.+ +.+..||.++.+..-..... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~~d------~~v~~~d~~~~~~~~~~~~~---~ 202 (325)
T d1pgua1 138 DNFGVFISWDSGNSLGEVSGH------SQRINACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTH---H 202 (325)
T ss_dssp SCSEEEEETTTCCEEEECCSC------SSCEEEEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEECSS---S
T ss_pred cceEEEEeecccccceeeeec------ccccccccccccccceEEEeecc------cccccccccccccceecccc---c
Confidence 345777888775544443321 00112233444555666667643 46899998887633222211 1
Q ss_pred CCcccccccceeeeecCCeEEEEcccCCCcccccccccCCCCcEEeecCCCCcccCCCCCCCcCeEEEEECCEEEEecC-
Q 012060 321 SARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLGEDPWVYMEDKNPSMISSSGNNNGENKLIHCYKNQVFVGRG- 399 (472)
Q Consensus 321 ~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~g~l~~~~g- 399 (472)
. ....+-.++.....+.+++.|+.++....-|++ +...+...... ..+-.+ .-..++..+|+.+++++
T Consensus 203 ~--~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~-----~~~~~~~l~~~-~~~v~~---~~~s~~~~dg~~l~s~s~ 271 (325)
T d1pgua1 203 K--QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-----SGEFLKYIEDD-QEPVQG---GIFALSWLDSQKFATVGA 271 (325)
T ss_dssp C--TTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-----TCCEEEECCBT-TBCCCS---CEEEEEESSSSEEEEEET
T ss_pred C--CCCccEEeeeccccceeccccccccceeeeeec-----ccccccccccc-cccccc---ceeeeeccCCCEEEEEeC
Confidence 1 111111222233467888899988765432332 22333321111 000000 11222334666666644
Q ss_pred -CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEee
Q 012060 400 -GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 400 -~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
+.|.||+-. +.+..+. |..+... .......+..-++..+++=.+-.-|-||+
T Consensus 272 D~~i~iwd~~--------~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 272 DATIRVWDVT--------TSKCVQK-WTLDKQQ-LGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp TSEEEEEETT--------TTEEEEE-EECCTTC-GGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCeEEEEECC--------CCCEEEE-EEecCCc-ccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 889999643 1122122 2222111 11223344544554555656668899997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=2.5 Score=36.01 Aligned_cols=245 Identities=13% Similarity=0.144 Sum_probs=110.7
Q ss_pred cccccceeeee-CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-CeEEE-EecCCCCCce
Q 012060 167 HLDNITSIRHV-WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TTVFS-SLVCPHKENS 243 (472)
Q Consensus 167 ~~~~v~~v~~l-~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~IYA-Gg~~~~~l~s 243 (472)
|-+.+.++++- ++.+.+.|+ .+| ++-.||..+.+.. ..+......+.+++... +.+.+ +... ..
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s--~Dg-----~i~iWd~~~~~~~--~~~~~h~~~V~~~~~~~~~~~~~~~~~~----~~ 82 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSAS--EDA-----TIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSAD----MT 82 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEE--SSS-----CEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETT----SC
T ss_pred CCCCeEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCCEE--EEEeCCCCcEEEEeeecccccccccccc----cc
Confidence 44556666653 567777887 455 4556776655432 22222223333344443 34555 4332 23
Q ss_pred eEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCc
Q 012060 244 VLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSAR 323 (472)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R 323 (472)
+..++....+....+.. .........+.+ ++...++++. .+.+..||.++++.+.+..... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~~~~---~~- 145 (317)
T d1vyhc1 83 IKLWDFQGFECIRTMHG------HDHNVSSVSIMP-NGDHIVSASR------DKTIKMWEVQTGYCVKTFTGHR---EW- 145 (317)
T ss_dssp CCEEETTSSCEEECCCC------CSSCEEEEEECS-SSSEEEEEET------TSEEEEEETTTCCEEEEEECCS---SC-
T ss_pred ccccccccccccccccc------ccccceeeeccC-CCceEEeecc------CcceeEeecccceeeeEEccCC---Cc-
Confidence 44566665331111100 000111122222 3444455542 3579999999998666665441 11
Q ss_pred ccccccceeeeecCCeEEEEcccCCCcccccccccC--------CCCcEEe--ecCCCCcccCCCCCCCcCeEEEEECCE
Q 012060 324 FGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG--------EDPWVYM--EDKNPSMISSSGNNNGENKLIHCYKNQ 393 (472)
Q Consensus 324 ~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e--------~d~W~~~--~~~~~~m~~~~~~~~~~~~~~~~~~g~ 393 (472)
..++ .-..++.+++.|+.++.....|+++-+ .+.-..+ .+.......... ...........+.
T Consensus 146 -~~~~----~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 218 (317)
T d1vyhc1 146 -VRMV----RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA--TGSETKKSGKPGP 218 (317)
T ss_dssp -EEEE----EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC--CSCC-------CC
T ss_pred -ceee----ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecc--ccceeeeeccCCc
Confidence 1111 123367788888888765544443322 1111112 221111110000 0022223334444
Q ss_pred EEEe--cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEee--cCceEEEeeeccceeEEeecC
Q 012060 394 VFVG--RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDA--GGNRLFVSREDVEGIEVWESS 463 (472)
Q Consensus 394 l~~~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 463 (472)
++++ ..+.|.+|+...- +. .+.+.+ ..+.|+.+.+ .|..| ++=.+...|-||+..
T Consensus 219 ~~~~~~~d~~i~~~~~~~~--------~~-~~~~~~-----~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 219 FLLSGSRDKTIKMWDVSTG--------MC-LMTLVG-----HDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYK 277 (317)
T ss_dssp EEEEEETTSEEEEEETTTT--------EE-EEEEEC-----CSSCEEEEEECSSSSCE-EEEETTTEEEEECCT
T ss_pred eeEeccCCCEEEEEECCCC--------cE-EEEEeC-----CCCCEEEEEECCCCCEE-EEEECCCeEEEEECC
Confidence 4444 3488999976311 11 111222 2346777765 45444 444445668899854
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=92.60 E-value=3.4 Score=37.08 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=49.8
Q ss_pred CCeEEEEecCC-CCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCc---cccceEEEEc
Q 012060 228 PTTVFSSLVCP-HKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAF---GYSGYVRMWD 303 (472)
Q Consensus 228 ~g~IYAGg~~~-~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~---~~~~sve~yD 303 (472)
+..||+..... .....|-++|..|.+++.+|.. . . .+ ...+.+-...||+++...+.. ...+.|..||
T Consensus 32 g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~---~-~---~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D 103 (373)
T d2madh_ 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG---G-F---LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCEEEEEcccccCCCceEEEEECCCCCEEEEEeC---C-C---Cc-cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence 34577731111 2356788999999876666543 1 1 11 244556566777765432211 0246899999
Q ss_pred CCCCeeeeEEcCC
Q 012060 304 PRSGEVVWETNEP 316 (472)
Q Consensus 304 p~~~~~vW~~~~~ 316 (472)
+++++++++...+
T Consensus 104 ~~t~~~~~~~~~~ 116 (373)
T d2madh_ 104 PVTFLPIADIELP 116 (373)
T ss_pred CCCCcEEEEEecC
Confidence 9999999888766
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.80 E-value=0.36 Score=48.98 Aligned_cols=122 Identities=16% Similarity=0.026 Sum_probs=66.4
Q ss_pred eeeCCeEEEEcCcCCCCceecc-----eeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeC
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYD-----LSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDK 249 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~-----sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp 249 (472)
.+.++.||+... .+...+++ ..+.|+|.............. ..- +++..++.||++..+ ..+-+.|.
T Consensus 74 iv~~g~vyv~t~--~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~-~~~-g~~~~~~~v~~~t~~----g~l~alda 145 (573)
T d1kb0a2 74 VVVDGIMYVSAS--WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV-VNR-GVALWKGKVYVGAWD----GRLIALDA 145 (573)
T ss_dssp EEETTEEEEECG--GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCS-CCC-CCEEETTEEEEECTT----SEEEEEET
T ss_pred EEECCEEEEECC--CCeEEEEeCCCCCeEEEeCCCCCccccccccccc-ccc-cceEECCcEEEEecc----cceeeecc
Confidence 357999998765 22222222 344555544332222111111 111 377789999985332 24557788
Q ss_pred CCcccccccccccCCCcccccc--------cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 250 STLQISSEIGRQSGASSKNMAV--------GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 250 ~t~~~~~~~~~~~~~~W~~v~~--------m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.|.+ ..|+.... +.-.-...++.+|+.+. .......+.|..||++|++.+|++-.
T Consensus 146 ~tG~----------~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~-~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 146 ATGK----------EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG-GAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp TTCC----------EEEEEETTTTCCSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred cccc----------ceecccCccCCcceEEeecceEEEeccEEEeec-cccccccceEEEEecCCccceeeeee
Confidence 8844 22433210 01111346888887432 22222467999999999999999753
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.044 Score=42.88 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=48.2
Q ss_pred EEEEE-CCeEEEEeHHHhhccCCCCccccccCCC----CCCCCCEEE-cCChhhHHHHhhcccc-----C-cccCCC---
Q 012060 18 VKLNV-GGKLFETTLSTIQSGGPDSLLYALSNRQ----SDEPNPIFI-DRDPDVFSVLLSLLRS-----N-RLPSTA--- 82 (472)
Q Consensus 18 V~LnV-GG~~F~t~r~tLa~~~pssyf~amf~~~----~~~~~~vfi-Drdp~~F~~IL~flrt-----g-~l~~~~--- 82 (472)
|+|.- +|..|.+.+.+... |..++.|+... +.++..|-+ ++++.+|+.|++|++. . ...+++
T Consensus 3 i~L~SsDg~~f~V~~~~A~~---S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi 79 (96)
T d2c9wc1 3 VKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTCCEEEEEHHHHTT---SHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCC
T ss_pred EEEEcCCCCEEEeeHHHHHH---hHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcC
Confidence 44433 78999999999655 77999998642 234455655 8999999999999952 1 111111
Q ss_pred CCcchHHHHhhhhhcC
Q 012060 83 SRFSKQELADEALYYG 98 (472)
Q Consensus 83 ~~~~v~~Ll~eA~~~q 98 (472)
+....-+|+.+|+||+
T Consensus 80 ~~~~l~eLi~AAnyLd 95 (96)
T d2c9wc1 80 APEIALELLMAANFLD 95 (96)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhc
Confidence 1133456888999875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=91.60 E-value=1.5 Score=40.16 Aligned_cols=71 Identities=11% Similarity=-0.044 Sum_probs=44.3
Q ss_pred CCceeEEEeCCCcccccccccccCCCcccc-cccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQSGASSKNM-AVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v-~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
+-+.|..||+.|.+++.+|..+........ .|-...+.+-+..||++... .+.+..||+.+++++.+..-+
T Consensus 94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~------~~~v~~~d~~~~~~~~~~~~~ 165 (368)
T d1mdah_ 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG------SSAAAGLSVPGASDDQLTKSA 165 (368)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS------SSCEEEEEETTTEEEEEEECS
T ss_pred cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcEeEEeecc
Confidence 467899999999988887754322111111 12233444555567775432 247889999999976666544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.55 E-value=0.44 Score=48.17 Aligned_cols=122 Identities=13% Similarity=0.035 Sum_probs=64.9
Q ss_pred eeeCCeEEEEcCcCCCCceecc-----eeeeecCCCCccccCCCCcCcccceeEEEEeCCeEEEEecCCCCCceeEEEeC
Q 012060 175 RHVWSDVAAVGSDYSSGIHFYD-----LSSSRHVASAHWTDPSDPRIYRATVTAIADSPTTVFSSLVCPHKENSVLLIDK 249 (472)
Q Consensus 175 ~~l~~~lYavGG~~~~g~~~l~-----sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~g~IYAGg~~~~~l~sVE~YDp 249 (472)
++.++.||+... .....+++ ..+.|+|....-......... ..- +++..++.||++..+ ..+-+.|.
T Consensus 63 iv~~g~vyv~t~--~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~----g~l~Alda 134 (560)
T d1kv9a2 63 LFHDGVIYTSMS--WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDA-VNR-GVALWGDKVYVGTLD----GRLIALDA 134 (560)
T ss_dssp EEETTEEEEEEG--GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCS-CCC-CCEEEBTEEEEECTT----SEEEEEET
T ss_pred EEECCEEEEECC--CCeEEEEeCCCCCEEEEECCCCCccccccccccc-ccc-CcceeCCeEEEEeCC----CEEEEEEC
Confidence 457888887765 22222222 334555443221111111111 122 266778889985333 24567788
Q ss_pred CCcccccccccccCCCcccccc-------cceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 250 STLQISSEIGRQSGASSKNMAV-------GKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 250 ~t~~~~~~~~~~~~~~W~~v~~-------m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
.|.++ .|+.... ....-...++.+|+.+.. ......+.|..||++|++.+|++-.
T Consensus 135 ~tG~~----------~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~-~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 135 KTGKA----------IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGG-AEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp TTCCE----------EEEEECSCTTSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCCcE----------EeccCccCcccceeeeeeeeeecCcccccccc-eeccccceEEEEECCCceEEeeeee
Confidence 88432 2333211 111123478888874332 2222457999999999999999874
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.42 E-value=3.6 Score=34.85 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=33.5
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
..+..||..+.+.+..+.... -......+ .-++.++++|+.+ +.|..||.++++.......
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~l~~~~~d------~~v~~~~~~~~~~~~~~~~ 183 (317)
T d1vyhc1 123 KTIKMWEVQTGYCVKTFTGHR------EWVRMVRP-NQDGTLIASCSND------QTVRVWVVATKECKAELRE 183 (317)
T ss_dssp SEEEEEETTTCCEEEEEECCS------SCEEEEEE-CTTSSEEEEEETT------SCEEEEETTTCCEEEEECC
T ss_pred cceeEeecccceeeeEEccCC------Ccceeeec-ccCCCEEEEEeCC------CeEEEEeeccceeeEEEec
Confidence 467789988855333222100 00011112 2456677777643 3688999988886655543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=91.07 E-value=0.63 Score=41.22 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=57.3
Q ss_pred eEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCee
Q 012060 230 TVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEV 309 (472)
Q Consensus 230 ~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~ 309 (472)
+|+++.. -++|-+||..|.+++..+.-..+ ..|-.+.+.+-+..|||++. ..+.|..||..+++.
T Consensus 10 ~l~~~~~----~~~v~v~D~~t~~~~~t~~~~~~-----~~p~~l~~spDG~~l~v~~~------~~~~v~~~d~~t~~~ 74 (346)
T d1jmxb_ 10 YMIVTNY----PNNLHVVDVASDTVYKSCVMPDK-----FGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKN 74 (346)
T ss_dssp EEEEEET----TTEEEEEETTTTEEEEEEECSSC-----CSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEE
T ss_pred EEEEEcC----CCEEEEEECCCCCEEEEEEcCCC-----CCcceEEECCCCCEEEEEEC------CCCcEEEEeCccCee
Confidence 3444543 35899999999886664432110 11223344444556788764 235799999999998
Q ss_pred eeEEcCCCCCCCCcccccccceeeeecCCeEEEEcc
Q 012060 310 VWETNEPGSGRSARFGDSFADVDVDVDELTLFKICS 345 (472)
Q Consensus 310 vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg 345 (472)
+++..... .........-.++....+..+|+.+.
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 75 TFHANLSS--VPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEEEESCC--STTEEEECSSCEEECTTSSEEEEEEE
T ss_pred eeeecccc--cccccCCceEEEEEecCCCEEEEEec
Confidence 88776542 11111111223344666777887653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=89.55 E-value=0.86 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.048 Sum_probs=43.0
Q ss_pred CCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCCCcccccccceeeeecCCeEEEEcccCCCccccccc
Q 012060 280 TGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRSARFGDSFADVDVDVDELTLFKICSKSGDIAMADLR 356 (472)
Q Consensus 280 ~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~ 356 (472)
++..++++.. .++|..||..+++++.+..-|. +.+..+++..-.+..||+.+..++.+..-|+.
T Consensus 7 ~~~~l~~~~~------~~~v~v~D~~t~~~~~t~~~~~-------~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~ 70 (346)
T d1jmxb_ 7 GHEYMIVTNY------PNNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70 (346)
T ss_dssp TCEEEEEEET------TTEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCcEEEEEcC------CCEEEEEECCCCCEEEEEEcCC-------CCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence 5666777662 3589999999999888876441 12223445566778899888877665444444
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.85 E-value=1.3 Score=38.77 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=56.6
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcccceeEEEEeC-Ce-EEEEecCCCCCceeEEEeCCCcccc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYRATVTAIADSP-TT-VFSSLVCPHKENSVLLIDKSTLQIS 255 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R~~~~ava~l~-g~-IYAGg~~~~~l~sVE~YDp~t~~~~ 255 (472)
++.++++|+ .+| .+..||..+.+...+..+.. ...+.+++... +. |++|+.+ ..|-.||..+.++.
T Consensus 147 ~~~~l~~g~--~dg-----~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~ 214 (299)
T d1nr0a2 147 DKQFVAVGG--QDS-----KVHVYKLSGASVSEVKTIVH-PAEITSVAFSNNGAFLVATDQS----RKVIPYSVANNFEL 214 (299)
T ss_dssp TSCEEEEEE--TTS-----EEEEEEEETTEEEEEEEEEC-SSCEEEEEECTTSSEEEEEETT----SCEEEEEGGGTTEE
T ss_pred ccccccccc--ccc-----cccccccccccccccccccc-cccccccccccccccccccccc----cccccccccccccc
Confidence 567788887 454 34556655544333222211 12222355443 34 4446544 36889998885543
Q ss_pred cccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCe
Q 012060 256 SEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGE 308 (472)
Q Consensus 256 ~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~ 308 (472)
..+.... .+.-+-..+.+. -++.++++|+.+ +.|..||.++.+
T Consensus 215 ~~~~~~~---~h~~~v~~l~~s-~~~~~l~sgs~d------g~i~iwd~~~~~ 257 (299)
T d1nr0a2 215 AHTNSWT---FHTAKVACVSWS-PDNVRLATGSLD------NSVIVWNMNKPS 257 (299)
T ss_dssp SCCCCCC---CCSSCEEEEEEC-TTSSEEEEEETT------SCEEEEETTCTT
T ss_pred ccccccc---cccccccccccc-ccccceEEEcCC------CEEEEEECCCCC
Confidence 3333311 111111223333 366667777744 469999998875
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=88.74 E-value=7.7 Score=34.53 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=52.0
Q ss_pred CCceeEEEeCCCcccccccccccCCCccccc-ccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCC
Q 012060 240 KENSVLLIDKSTLQISSEIGRQSGASSKNMA-VGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGS 318 (472)
Q Consensus 240 ~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~ 318 (472)
..+.|..||+.+++++.++.......+.... +....+.+-+..+|+.... . .+.+..+|+.+.++.-+...+
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-~----~~~~~~~~~~~~~~~~~~~~~-- 167 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-A----GPAVGLVVQGGSSDDQLLSSP-- 167 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc-C----CCceEEeeccCCeEEEEeccc--
Confidence 3578999999998877776553322222222 2333444455555554332 1 235677777777722222222
Q ss_pred CCCCcccccccceeeeecCCeEEEEcccCCCcc
Q 012060 319 GRSARFGDSFADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 319 ~~~~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
.+ +.....+..+|+.+..++...
T Consensus 168 -------~~---~~~s~~g~~~~v~~~~dg~~~ 190 (373)
T d2madh_ 168 -------TC---YHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred -------ee---EEEecCCCcEEEEEcCCCeEE
Confidence 11 123555677888877776544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.68 E-value=3.1 Score=38.36 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred eeeeeCCeEEEEcCcCCCCceecceeeeecCCCCccc----cCCCCcCcccceeEEEEe-CCeEEE-EecCCCCCceeEE
Q 012060 173 SIRHVWSDVAAVGSDYSSGIHFYDLSSSRHVASAHWT----DPSDPRIYRATVTAIADS-PTTVFS-SLVCPHKENSVLL 246 (472)
Q Consensus 173 ~v~~l~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~----~~a~m~~~R~~~~ava~l-~g~IYA-Gg~~~~~l~sVE~ 246 (472)
++++-.+.+.|.|+ .+| ++-.||..+.+.. ....+......+.+++.. ++.+.| |+.+. ....|-.
T Consensus 189 ~v~~s~dg~lasgs--~Dg-----~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~-t~~~i~l 260 (393)
T d1sq9a_ 189 SVDISERGLIATGF--NNG-----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITL 260 (393)
T ss_dssp EEEECTTSEEEEEC--TTS-----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEE
T ss_pred EEEECCCCEEEEEe--CCC-----cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCC-Ccceeee
Confidence 44444455667787 455 4556776655422 222222222333345554 455555 65543 2456888
Q ss_pred EeCCCcccccccccccCCCccccc--------ccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCC
Q 012060 247 IDKSTLQISSEIGRQSGASSKNMA--------VGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 247 YDp~t~~~~~~~~~~~~~~W~~v~--------~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~ 316 (472)
||..+.+++..+..... ...... -+.+.+.+ ++.+.++|+.+ ++|..||.++++.+.++...
T Consensus 261 wd~~~g~~~~~l~~~~~-~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D------~~v~vWd~~~g~~~~~l~gH 330 (393)
T d1sq9a_ 261 YETEFGERIGSLSVPTH-SSQASLGEFAHSSWVMSLSFND-SGETLCSAGWD------GKLRFWDVKTKERITTLNMH 330 (393)
T ss_dssp EETTTCCEEEEECBC---------CCBSBSSCEEEEEECS-SSSEEEEEETT------SEEEEEETTTTEEEEEEECC
T ss_pred cccccceeeeeeccccc-cccceeeeecccCceeeeccCC-CCCeeEEECCC------CEEEEEECCCCCEEEEECCc
Confidence 99998665444432110 000000 01223333 66777887744 47999999999988887754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.63 E-value=1.1 Score=41.74 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=64.2
Q ss_pred EEEEeCCeEEE-EecCCCCCceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEE
Q 012060 223 AIADSPTTVFS-SLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRM 301 (472)
Q Consensus 223 ava~l~g~IYA-Gg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~ 301 (472)
+++...+.+.| |+.+ .+|-.||..+.+++..+..+..-.=+.-+-..+.+.+ ++.+.++|+.++. ...|.+
T Consensus 189 ~v~~s~dg~lasgs~D----g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t---~~~i~l 260 (393)
T d1sq9a_ 189 SVDISERGLIATGFNN----GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNS---FGCITL 260 (393)
T ss_dssp EEEECTTSEEEEECTT----SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETT---EEEEEE
T ss_pred EEEECCCCEEEEEeCC----CcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCC---cceeee
Confidence 36666555556 6443 4788999998664443322110000000112223333 6677788876664 357999
Q ss_pred EcCCCCeeeeEEcCCCCC---CCCccccc--ccceeeeecCCeEEEEcccCCCcc
Q 012060 302 WDPRSGEVVWETNEPGSG---RSARFGDS--FADVDVDVDELTLFKICSKSGDIA 351 (472)
Q Consensus 302 yDp~~~~~vW~~~~~~~~---~~~R~~~~--~~d~~v~~~~~~iy~vGg~~g~~~ 351 (472)
||+++++.++++..+... ...-.||. +.+++... ++.+.+.||.|+...
T Consensus 261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLR 314 (393)
T ss_dssp EETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred cccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEE
Confidence 999999988887644111 11111221 22223333 567778888887644
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.46 E-value=2.5 Score=36.57 Aligned_cols=176 Identities=11% Similarity=0.188 Sum_probs=86.3
Q ss_pred ceeEEEeCCCcccccccccccCCCcccccccceeEEecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 242 NSVLLIDKSTLQISSEIGRQSGASSKNMAVGKLTWIPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~m~~~~~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
+.+..|+..+.+.+..+.. .... .....++..+++|+.++ +.++.||....+..-+...+. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~v~~~~~-----~~v~~~~~~~~~~~~~~~~~~--~- 162 (287)
T d1pgua2 101 DDLLILQSFTGDIIKSVRL-----NSPG-----SAVSLSQNYVAVGLEEG-----NTIQVFKLSDLEVSFDLKTPL--R- 162 (287)
T ss_dssp SEEEEEETTTCCEEEEEEC-----SSCE-----EEEEECSSEEEEEETTT-----SCEEEEETTEEEEEEECSSCC--S-
T ss_pred ccceeeeccceeeeeeccc-----ccee-----eeeeccCcceeeecccc-----ceeeeeeccccceeeeeeecc--C-
Confidence 3566788777554333332 1111 11223555566666444 368999987666333333321 1
Q ss_pred CcccccccceeeeecCCeEEEEcccCCCcccccccccC--CCCcEE----eecCCCCcc-cCCCCCCCcCeEEEEECCEE
Q 012060 322 ARFGDSFADVDVDVDELTLFKICSKSGDIAMADLRNLG--EDPWVY----MEDKNPSMI-SSSGNNNGENKLIHCYKNQV 394 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~~iy~vGg~~g~~~~~dl~s~e--~d~W~~----~~~~~~~m~-~~~~~~~~~~~~~~~~~g~l 394 (472)
..+.+++... ++..+++|..++....-|+.+-+ ...|.. +.. +. .+.. ........++++
T Consensus 163 ----~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~----~~~~p~~----~~~~~~~~~~~~ 229 (287)
T d1pgua2 163 ----AKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA----ISWKPAE----KGANEEEIEEDL 229 (287)
T ss_dssp ----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE----EEECCCC----------CCSCCE
T ss_pred ----CceeEEEecc-Cccccccccccccccceeecccccccccccccccccce----eeecccc----cccccccCCCCe
Confidence 1122222233 66777788888765443433211 111110 000 00 0110 112222345677
Q ss_pred EEecC--CeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCceEEEeeeccceeEEee
Q 012060 395 FVGRG--GSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGNRLFVSREDVEGIEVWE 461 (472)
Q Consensus 395 ~~~~g--~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~ 461 (472)
+++++ +.|-+|+-... ...++. +- ...+.|+.+.+-.|..++|=.+-..|-+|.
T Consensus 230 l~sgs~D~~i~iw~~~~~-------~~~~~~-~~-----~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 230 VATGSLDTNIFIYSVKRP-------MKIIKA-LN-----AHKDGVNNLLWETPSTLVSSGADACIKRWN 285 (287)
T ss_dssp EEEEETTSCEEEEESSCT-------TCCEEE-TT-----SSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eEeecCCCeEEEEECCCC-------CeEEEE-eC-----CCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence 77754 78999984211 112222 11 224579999876666677776678899996
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.11 E-value=2.1 Score=43.06 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCccccc-------ccceeEEecCCeEEEEEEeCCCcccc
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMA-------VGKLTWIPATGVVLGSAIAWGAFGYS 296 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~-------~m~~~~~~~~g~Lyv~Gg~~g~~~~~ 296 (472)
++..+++||++..+ ..+-+.|.+|.+ ..|+.-. .....-...++.+|+.+. .......
T Consensus 111 ~a~~~~~i~~~~~~----g~l~alda~tG~----------~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~-~~~~~~~ 175 (571)
T d2ad6a1 111 LAYGAGQIVKKQAN----GHLLALDAKTGK----------INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS-GAELGVR 175 (571)
T ss_dssp CEEETTEEEEECTT----SEEEEEETTTCC----------EEEEEECCCGGGTCBCCSCCEEETTEEEEECB-CGGGTCC
T ss_pred ceeeCCeEEEEeCC----CcEEeeehhhhh----------hhccccccccccccceeecCeEeCCeEEEeec-ccccccc
Confidence 67789999995333 245577888843 2243211 011112447899988543 2222246
Q ss_pred ceEEEEcCCCCeeeeEEcCC
Q 012060 297 GYVRMWDPRSGEVVWETNEP 316 (472)
Q Consensus 297 ~sve~yDp~~~~~vW~~~~~ 316 (472)
+.|.+||.+|++.+|++...
T Consensus 176 G~v~a~D~~TG~~~W~~~t~ 195 (571)
T d2ad6a1 176 GAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp CEEEEEETTTCCEEEEEESS
T ss_pred CcEEEEECCCCcEEEEEecc
Confidence 79999999999999987643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=84.28 E-value=14 Score=33.18 Aligned_cols=240 Identities=10% Similarity=0.021 Sum_probs=109.5
Q ss_pred CCeEEEEcCcCCCCceecceeeeecCCCCccccCCCCcCcc--cceeEEEEe--CCeEEEEecCCCCCceeEEEeCCCcc
Q 012060 178 WSDVAAVGSDYSSGIHFYDLSSSRHVASAHWTDPSDPRIYR--ATVTAIADS--PTTVFSSLVCPHKENSVLLIDKSTLQ 253 (472)
Q Consensus 178 ~~~lYavGG~~~~g~~~l~sve~ydp~t~~W~~~a~m~~~R--~~~~ava~l--~g~IYAGg~~~~~l~sVE~YDp~t~~ 253 (472)
++.||++..........-..+.+|||.+..+.......... ....++++. ++.||+... .+.+.++||.+..
T Consensus 28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~----~~~i~~~~~~g~~ 103 (314)
T d1pjxa_ 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----RLGLLVVQTDGTF 103 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET----TTEEEEEETTSCE
T ss_pred CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC----CCeEEEEeCCCcE
Confidence 67888875410000112245788999988776543221110 001125544 346888321 2468899998732
Q ss_pred cccccccccCCCcccccccce---eEEecCCeEEEEEEeCC--C-------ccccceEEEEcCCCCeeeeEEcCCCCCCC
Q 012060 254 ISSEIGRQSGASSKNMAVGKL---TWIPATGVVLGSAIAWG--A-------FGYSGYVRMWDPRSGEVVWETNEPGSGRS 321 (472)
Q Consensus 254 ~~~~~~~~~~~~W~~v~~m~~---~~~~~~g~Lyv~Gg~~g--~-------~~~~~sve~yDp~~~~~vW~~~~~~~~~~ 321 (472)
. ++-....+. .+++. -...-+|.||++-.... . ....+.|.+++|.-.. ...... +..
T Consensus 104 ~--~~~~~~~~g----~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~---~~~~~~-~~~ 173 (314)
T d1pjxa_ 104 E--EIAKKDSEG----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM---IQVDTA-FQF 173 (314)
T ss_dssp E--ECCSBCTTS----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE---EEEEEE-ESS
T ss_pred E--EEEeccccc----cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCce---eEeeCC-cce
Confidence 1 000000000 11111 12336789999642211 0 0013478888886443 221110 011
Q ss_pred CcccccccceeeeecCC----eEEEEcccCCCcccccccccC--CCCcEEeecCCCCcccCCCCCCCcCeEEEE-ECCEE
Q 012060 322 ARFGDSFADVDVDVDEL----TLFKICSKSGDIAMADLRNLG--EDPWVYMEDKNPSMISSSGNNNGENKLIHC-YKNQV 394 (472)
Q Consensus 322 ~R~~~~~~d~~v~~~~~----~iy~vGg~~g~~~~~dl~s~e--~d~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~g~l 394 (472)
+. |.++ ...++ .||+.-...+.+...|+..-. .+ ...+.. +.....+ .--++++ -+|.|
T Consensus 174 pN-Gi~~-----~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~----~~~~~~~---~pdGiavD~~Gnl 239 (314)
T d1pjxa_ 174 PN-GIAV-----RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KKVWGH----IPGTHEG---GADGMDFDEDNNL 239 (314)
T ss_dssp EE-EEEE-----EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EEEEEE----CCCCSSC---EEEEEEEBTTCCE
T ss_pred ee-eeEE-----CCCCCcceeEEEEEeecccceEEeeccCccccce-eeEEEE----ccccccc---cceeeEEecCCcE
Confidence 11 2222 22222 577664433332222222111 11 111222 1111111 1235654 56899
Q ss_pred EEe--cCCeEEEeeccccccccccCCcceeeccccccccCCCCceEEEeecCc--eEEEeeeccceeEE
Q 012060 395 FVG--RGGSLEVWSRVREGRNRSCSEGLFRRNFVDRVEDSGRGAISRIDAGGN--RLFVSREDVEGIEV 459 (472)
Q Consensus 395 ~~~--~g~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~v 459 (472)
|++ +++.|.+|++--- .+ + ...+ ......+.++||+| +||||=.+...|..
T Consensus 240 yVa~~~~g~I~~~dp~~g--------~~-~----~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 240 LVANWGSSHIEVFGPDGG--------QP-K----MRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEEETTTEEEEECTTCB--------SC-S----EEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEcCCCEEEEEeCCCC--------EE-E----EEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence 998 4789999986311 01 0 1111 12346889999987 49999665554433
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=83.18 E-value=3.8 Score=41.31 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=27.2
Q ss_pred EecCCeEEEEEEeCCCccccceEEEEcCCCCeeeeEEcC
Q 012060 277 IPATGVVLGSAIAWGAFGYSGYVRMWDPRSGEVVWETNE 315 (472)
Q Consensus 277 ~~~~g~Lyv~Gg~~g~~~~~~sve~yDp~~~~~vW~~~~ 315 (472)
...+++||+... +......+.|..||.+|++.+|++-.
T Consensus 163 ~v~~~~vivg~~-~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 163 YVVKDKVIIGSS-GAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp EEETTEEEECCB-CGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred cEECCeEEEeec-cccccccCceEEEECCCCcEEEEeec
Confidence 347899988432 22222468999999999999998753
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.76 E-value=4.7 Score=40.26 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=43.6
Q ss_pred EEEeCCeEEEEecCCCCCceeEEEeCCCcccccccccccCCCcccccc--------cceeEEe----cCCeEEEEEEeCC
Q 012060 224 IADSPTTVFSSLVCPHKENSVLLIDKSTLQISSEIGRQSGASSKNMAV--------GKLTWIP----ATGVVLGSAIAWG 291 (472)
Q Consensus 224 va~l~g~IYAGg~~~~~l~sVE~YDp~t~~~~~~~~~~~~~~W~~v~~--------m~~~~~~----~~g~Lyv~Gg~~g 291 (472)
++..++.||++..+ ..+-+.|.+|.+ ..|+.... +..+.+. ..+.+++.|...+
T Consensus 113 ~a~~~~~i~~~t~~----~~l~alda~tG~----------~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~ 178 (582)
T d1flga_ 113 AAIYGDKVFFGTLD----ASVVALNKNTGK----------VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGD 178 (582)
T ss_dssp CEEETTEEEEEETT----TEEEEEESSSCC----------EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCG
T ss_pred ceEeCCceEEecCC----CeEEEecccccc----------eeeeecccCCCccceeecCceEecCCcEeEEEEEeCcccc
Confidence 67788999995433 245577999843 23543211 1111111 2233333332222
Q ss_pred CccccceEEEEcCCCCeeeeEEc
Q 012060 292 AFGYSGYVRMWDPRSGEVVWETN 314 (472)
Q Consensus 292 ~~~~~~sve~yDp~~~~~vW~~~ 314 (472)
.....+.|..+|++|++.+|+.-
T Consensus 179 ~~~~~g~v~a~d~~tG~~~W~~~ 201 (582)
T d1flga_ 179 EFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp GGCCBCEEEEECTTTCCEEEEEE
T ss_pred ccccccceEEecCCCCcEEEEEe
Confidence 22245789999999999999874
|