Citrus Sinensis ID: 012087
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | 2.2.26 [Sep-21-2011] | |||||||
| Q681K7 | 593 | Protein GAMETE EXPRESSED | yes | no | 0.927 | 0.736 | 0.584 | 1e-144 |
| >sp|Q681K7|GEX1_ARATH Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/443 (58%), Positives = 330/443 (74%), Gaps = 6/443 (1%)
Query: 19 CQSWGWFSSGSS-AEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNA 77
C SWGWFSS SS AE S + R + +FSM+ ++K Q++E+ +L+G +
Sbjct: 24 CHSWGWFSSSSSSAEDPYSSSFSRSRKSN--PDFSMEVFSDQKAVQVLEN---KLVGLTS 78
Query: 78 CWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKID 137
CWQNAY +L AGC E IA EEKR RFAW+LSDCF KDSGRPAFP C +S M++CLKK+D
Sbjct: 79 CWQNAYSYLLAGCKETIATEEKRKRFAWYLSDCFIKDSGRPAFPTCKDESVMMSCLKKLD 138
Query: 138 DEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQ 197
D EHKIYL FLLETN+IC QLQ++ F+ E ERLVNELK +A YTE KL+I+E KSD L+Q
Sbjct: 139 DHEHKIYLDFLLETNTICQQLQSNAFKNEIERLVNELKNTAQYTEDKLDILESKSDALIQ 198
Query: 198 SSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVR 257
+S+ IHDSL S+D RVQNVA + + LS+ + + + K IA SQ L++GQV+
Sbjct: 199 TSSMIHDSLGSLDVRVQNVASVTNTLETSVSGLSQQTVEISQEQKNIAESQLALRDGQVK 258
Query: 258 IKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317
+KE L +GM +DAY+N+ + V+ L+ + +IE EIS G+ + + M LQ D+IG+
Sbjct: 259 MKETLKDGMDMFLDAYTNIQEGVDKLKSDTEQIEVEISVLGNNLSTKMIDLQSTTDDIGT 318
Query: 318 MAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQE 377
SLDKQQ+LL GQ+ AL+ +Q LT+FQSEAL ESRNTLQ L E+ +QQE+L KRQE
Sbjct: 319 KTRSSLDKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLKEFSQEQQEDLAKRQE 378
Query: 378 QLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLS 437
+LQEVHDHLF+NS+S+L AQ AFE+KQA+MF+ALDKLFALHNAMLLESR+IKAF IY LS
Sbjct: 379 KLQEVHDHLFENSKSMLEAQVAFEAKQANMFVALDKLFALHNAMLLESRVIKAFVIYFLS 438
Query: 438 IFIIYMLTSTKQTYTVRPRLYIG 460
IF+IYM TSTKQTY +RPRLYIG
Sbjct: 439 IFVIYMFTSTKQTYIIRPRLYIG 461
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Has a dual function during gametophyte development and early embryogenesis. Required for correct pollen maturation. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| 255585703 | 603 | conserved hypothetical protein [Ricinus | 0.961 | 0.751 | 0.647 | 1e-164 | |
| 359485795 | 605 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.752 | 0.630 | 1e-162 | |
| 356513862 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.758 | 0.609 | 1e-159 | |
| 449484471 | 588 | PREDICTED: protein GAMETE EXPRESSED 1-li | 0.959 | 0.768 | 0.632 | 1e-157 | |
| 356537888 | 593 | PREDICTED: uncharacterized protein LOC10 | 0.927 | 0.736 | 0.602 | 1e-154 | |
| 357501213 | 581 | hypothetical protein MTR_6g091980 [Medic | 0.942 | 0.764 | 0.578 | 1e-153 | |
| 356569389 | 593 | PREDICTED: uncharacterized protein LOC10 | 0.955 | 0.758 | 0.595 | 1e-153 | |
| 449469316 | 585 | PREDICTED: protein GAMETE EXPRESSED 1-li | 0.953 | 0.767 | 0.614 | 1e-153 | |
| 296084973 | 547 | unnamed protein product [Vitis vinifera] | 0.866 | 0.745 | 0.665 | 1e-153 | |
| 297796425 | 596 | hypothetical protein ARALYDRAFT_495632 [ | 0.976 | 0.771 | 0.574 | 1e-148 |
| >gi|255585703|ref|XP_002533535.1| conserved hypothetical protein [Ricinus communis] gi|223526602|gb|EEF28852.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 300/463 (64%), Positives = 371/463 (80%), Gaps = 10/463 (2%)
Query: 5 HILFMLILFL-VLPGCQSWGWF------SSGSSAEKTQQSDYPRDISNGFVAEFSMKGLH 57
H+LF+LIL V P CQSWGWF S S+A Q +YP S VAEFS+ GL
Sbjct: 6 HVLFLLILMSNVTPRCQSWGWFFSSTENPSSSAAHNPSQRNYPFASS---VAEFSIDGLK 62
Query: 58 NEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGR 117
++KG +L+E+AK++L SN+CWQNAY LFAGCS+I+A+EEKR + AWHLSDCFQKDSGR
Sbjct: 63 DDKGMKLLENAKKKLDISNSCWQNAYHQLFAGCSQILAVEEKRKQLAWHLSDCFQKDSGR 122
Query: 118 PAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKS 177
FP CD KS M+NCLKK+ D EHK+YL FLLETN+ICYQLQAH F+++ ERLVN+LK S
Sbjct: 123 LPFPYCDTKSPMLNCLKKLSDNEHKVYLEFLLETNAICYQLQAHSFKHKMERLVNDLKDS 182
Query: 178 ADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVV 237
A++T +L+II E++++L +SS+QIH++L SID +VQNVAQT K V+ M +LS+HSE V
Sbjct: 183 AEFTTDQLQIIHERTESLSKSSDQIHETLSSIDFQVQNVAQTTKDVKGNMVVLSQHSEAV 242
Query: 238 YNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297
Y QSKEIA SQ+EL+E QVR+ +KL EG+AT+ DAY+NLG++V+NLR+E +EIEK+I
Sbjct: 243 YKQSKEIANSQSELREEQVRMNDKLKEGIATVHDAYTNLGQQVDNLRNETVEIEKQIGAV 302
Query: 298 GDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNT 357
G+ M M+ LQ AD I AG SLDKQQ L+ GQSTAL+ LQLLT+FQSEAL ESR+T
Sbjct: 303 GETMSLRMQNLQNSADEIEDKAGKSLDKQQLLIDGQSTALKGLQLLTEFQSEALEESRST 362
Query: 358 LQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFAL 417
LQ EYG +QQEELL++QEQ+Q+VHDHL +NS+SILAAQEAFESKQASMFIALDKLFAL
Sbjct: 363 LQSFTEYGRRQQEELLQQQEQIQQVHDHLIENSKSILAAQEAFESKQASMFIALDKLFAL 422
Query: 418 HNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIG 460
HNAMLLESR+IKAF IY L +FIIYMLTSTKQTY +R RLY+G
Sbjct: 423 HNAMLLESRIIKAFVIYFLLMFIIYMLTSTKQTYAIRARLYVG 465
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485795|ref|XP_002271238.2| PREDICTED: uncharacterized protein LOC100247755 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356513862|ref|XP_003525627.1| PREDICTED: uncharacterized protein LOC100792191 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449484471|ref|XP_004156892.1| PREDICTED: protein GAMETE EXPRESSED 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356537888|ref|XP_003537438.1| PREDICTED: uncharacterized protein LOC100814482 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357501213|ref|XP_003620895.1| hypothetical protein MTR_6g091980 [Medicago truncatula] gi|355495910|gb|AES77113.1| hypothetical protein MTR_6g091980 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356569389|ref|XP_003552884.1| PREDICTED: uncharacterized protein LOC100814301 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449469316|ref|XP_004152367.1| PREDICTED: protein GAMETE EXPRESSED 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|296084973|emb|CBI28388.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297796425|ref|XP_002866097.1| hypothetical protein ARALYDRAFT_495632 [Arabidopsis lyrata subsp. lyrata] gi|297311932|gb|EFH42356.1| hypothetical protein ARALYDRAFT_495632 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| TAIR|locus:2173877 | 593 | GEX1 "gamete expressed protein | 0.961 | 0.763 | 0.520 | 7.7e-119 |
| TAIR|locus:2173877 GEX1 "gamete expressed protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 240/461 (52%), Positives = 310/461 (67%)
Query: 3 RPHILFMLILFLV-LP-GCQSWGWFSSGSS-AEKTQQSDYPRDISNGFVAEFSMKGLHNE 59
R +LF+L++ L+ P C SWGWFSS SS AE S + R + +FSM+ ++
Sbjct: 6 RKCLLFLLLIILLDSPLTCHSWGWFSSSSSSAEDPYSSSFSRSRKSN--PDFSMEVFSDQ 63
Query: 60 KGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPA 119
K Q++E+ +L+G +CWQNAY +L AGC E IA EEKR RFAW+LSDCF KDSGRPA
Sbjct: 64 KAVQVLEN---KLVGLTSCWQNAYSYLLAGCKETIATEEKRKRFAWYLSDCFIKDSGRPA 120
Query: 120 FPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSAD 179
FP C +S M++CLKK+DD EHKIYL FLLETN+IC QLQ++ F+ E ERLVNELK +A
Sbjct: 121 FPTCKDESVMMSCLKKLDDHEHKIYLDFLLETNTICQQLQSNAFKNEIERLVNELKNTAQ 180
Query: 180 YTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN 239
YTE KL+I+E KSD L+Q+S+ IHDSL S+D RVQNVA + + LS+ + +
Sbjct: 181 YTEDKLDILESKSDALIQTSSMIHDSLGSLDVRVQNVASVTNTLETSVSGLSQQTVEISQ 240
Query: 240 QSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDXXXXXXXXXXXXGD 299
+ K IA SQ L++GQV++KE L +GM +DAY+N+ + V+ L+ G+
Sbjct: 241 EQKNIAESQLALRDGQVKMKETLKDGMDMFLDAYTNIQEGVDKLKSDTEQIEVEISVLGN 300
Query: 300 AMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQ 359
+ + M LQ D+IG+ SLDKQQ+LL GQ+ AL+ +Q LT+FQSEAL ESRNTLQ
Sbjct: 301 NLSTKMIDLQSTTDDIGTKTRSSLDKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQ 360
Query: 360 ELAEYGHXXXXXXXXXXXXXXXVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHN 419
L E+ VHDHLF+NS+S+L AQ AFE+KQA+MF+ALDKLFALHN
Sbjct: 361 RLKEFSQEQQEDLAKRQEKLQEVHDHLFENSKSMLEAQVAFEAKQANMFVALDKLFALHN 420
Query: 420 AMLLESRMIKAXXXXXXXXXXXXMLTSTKQTYTVRPRLYIG 460
AMLLESR+IKA M TSTKQTY +RPRLYIG
Sbjct: 421 AMLLESRVIKAFVIYFLSIFVIYMFTSTKQTYIIRPRLYIG 461
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 471 432 0.00086 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 615 (65 KB)
Total size of DFA: 253 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.92u 0.10s 41.02t Elapsed: 00:00:02
Total cpu time: 40.92u 0.10s 41.02t Elapsed: 00:00:02
Start: Tue May 21 10:39:03 2013 End: Tue May 21 10:39:05 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q681K7 | GEX1_ARATH | No assigned EC number | 0.5846 | 0.9278 | 0.7369 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 471 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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Score = 50.4 bits (121), Expect = 1e-06
Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 164 QYETERLVNELKKS-ADYTEHKLEI------IEEKSDTLLQSSNQIHD---SLDSIDHRV 213
+ E E L EL++ E +LE+ IEE L +N+I + R+
Sbjct: 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
Query: 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDA- 272
N+ + + + ++ L + + + E+ EL+E ++ +L+E A L +
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
Query: 273 --YSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLL 330
L +++ LR + ++E +I+ +++R + D ++ QQ
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASL-------NNEIER-LEARLERLEDRRERLQQ-- 421
Query: 331 HGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNS 390
E +LL K + L E + L+EL E + QEEL + +E L+E+ + L +
Sbjct: 422 -------EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
Query: 391 RSILAAQEAFESKQA 405
+++ AA+ QA
Sbjct: 475 QALDAAERELAQLQA 489
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SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| PF04163 | 544 | Tht1: Tht1-like nuclear fusion protein ; InterPro: | 99.46 | |
| PRK15048 | 553 | methyl-accepting chemotaxis protein II; Provisiona | 97.17 | |
| PRK15041 | 554 | methyl-accepting chemotaxis protein I; Provisional | 97.04 | |
| smart00283 | 262 | MA Methyl-accepting chemotaxis-like domains (chemo | 96.36 | |
| PRK09793 | 533 | methyl-accepting protein IV; Provisional | 96.28 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 95.86 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.82 | |
| PRK15048 | 553 | methyl-accepting chemotaxis protein II; Provisiona | 95.55 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 94.83 | |
| PRK09793 | 533 | methyl-accepting protein IV; Provisional | 94.82 | |
| KOG0810 | 297 | consensus SNARE protein Syntaxin 1 and related pro | 94.32 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 93.7 | |
| PRK15041 | 554 | methyl-accepting chemotaxis protein I; Provisional | 93.65 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 93.21 | |
| TIGR02132 | 189 | phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR | 92.39 | |
| PF00015 | 213 | MCPsignal: Methyl-accepting chemotaxis protein (MC | 92.24 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 91.97 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 91.35 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 90.95 | |
| TIGR00996 | 291 | Mtu_fam_mce virulence factor Mce family protein. M | 89.75 | |
| PF07464 | 155 | ApoLp-III: Apolipophorin-III precursor (apoLp-III) | 89.72 | |
| PRK11637 | 428 | AmiB activator; Provisional | 88.7 | |
| PF00015 | 213 | MCPsignal: Methyl-accepting chemotaxis protein (MC | 88.61 | |
| COG0840 | 408 | Tar Methyl-accepting chemotaxis protein [Cell moti | 88.5 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 88.34 | |
| PF07464 | 155 | ApoLp-III: Apolipophorin-III precursor (apoLp-III) | 88.24 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 87.32 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 87.19 | |
| PF03908 | 92 | Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr | 85.21 | |
| TIGR00833 | 910 | actII Transport protein. Characterized members of | 84.88 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 83.52 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 83.07 | |
| PRK11637 | 428 | AmiB activator; Provisional | 82.69 | |
| PRK10698 | 222 | phage shock protein PspA; Provisional | 81.99 | |
| TIGR02977 | 219 | phageshock_pspA phage shock protein A. Members of | 81.43 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 81.39 | |
| COG1511 | 780 | Predicted membrane protein [Function unknown] | 80.82 | |
| PF07889 | 126 | DUF1664: Protein of unknown function (DUF1664); In | 80.76 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 80.57 |
| >PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy | Back alignment and domain information |
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Probab=99.46 E-value=1e-08 Score=111.04 Aligned_cols=102 Identities=20% Similarity=0.370 Sum_probs=81.3
Q ss_pred cCCCCchHHHHHHHHhccc---hhhhccHhHHHHHHHHhhccchhhcCCCCCC-CCCCcchHhHhhhcC--ChHHHHHHH
Q 012087 72 LIGSNACWQNAYRHLFAGC---SEIIAIEEKRSRFAWHLSDCFQKDSGRPAFP-NCDQKSAMINCLKKI--DDEEHKIYL 145 (471)
Q Consensus 72 l~~~~~CW~~Al~~L~~~C---~~L~~~de~qSrLAl~LtNCfle~SGR~~fp-~C~~~~si~~Ct~~M--dd~af~vY~ 145 (471)
+.+.+.|++.|+..+-+.| .... +-+.|.+.|++|+-|.++.+|-. +| .|.. .++..|+..| ++..|.+|.
T Consensus 59 l~~~s~C~~~A~~~l~~~C~~~~g~e-sid~rv~~Ai~LsiCEle~a~~~-iP~~C~~-~~~~~Cl~~L~~s~q~Wttys 135 (544)
T PF04163_consen 59 LFLKSSCHRDALRSLIPQCQLLDGVE-SIDDRVSSAIKLSICELENAGIE-IPSECSP-GSLDSCLRALESSPQWWTTYS 135 (544)
T ss_pred hccCCcHHHHHHHHHHHhhcCCCCcc-cHHHHHHHHHHHHhhhcccCCCC-CCcccCc-ccHHHHHHHhcCCcHHHHhhh
Confidence 3467899999999999999 2222 22378888999999999999963 43 5888 6799999988 899999999
Q ss_pred HHHHhHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 012087 146 AFLLETNSICYQLQAHGFQYETERLVNELKK 176 (471)
Q Consensus 146 eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~ 176 (471)
-+|.++..||+..+....+++.=.+-..+.+
T Consensus 136 ~~~~~~~~iC~a~r~~~eKeqiL~ly~niT~ 166 (544)
T PF04163_consen 136 GYYQNALVICHAARLPYEKEQILELYQNITE 166 (544)
T ss_pred hhHhhHHHHHHHccCchhHHHHHHHHHHHHH
Confidence 9999999999999988777764333333333
|
|
| >PRK15048 methyl-accepting chemotaxis protein II; Provisional | Back alignment and domain information |
|---|
| >PRK15041 methyl-accepting chemotaxis protein I; Provisional | Back alignment and domain information |
|---|
| >smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer) | Back alignment and domain information |
|---|
| >PRK09793 methyl-accepting protein IV; Provisional | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PRK15048 methyl-accepting chemotaxis protein II; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK09793 methyl-accepting protein IV; Provisional | Back alignment and domain information |
|---|
| >KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK15041 methyl-accepting chemotaxis protein I; Provisional | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit | Back alignment and domain information |
|---|
| >PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour [] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >TIGR00996 Mtu_fam_mce virulence factor Mce family protein | Back alignment and domain information |
|---|
| >PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour [] | Back alignment and domain information |
|---|
| >COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway | Back alignment and domain information |
|---|
| >TIGR00833 actII Transport protein | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PRK10698 phage shock protein PspA; Provisional | Back alignment and domain information |
|---|
| >TIGR02977 phageshock_pspA phage shock protein A | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG1511 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 8e-12
Identities = 66/475 (13%), Positives = 142/475 (29%), Gaps = 123/475 (25%)
Query: 59 EKGKQLVEDAKRRLIGSNACW-QNAYRHLFAGCSEIIAI-EEKRSRFAWHLSDCFQKDS- 115
K +++V+ ++ N + + + S + + E+R R ++ + F K +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNV 131
Query: 116 GRPAFPNCDQKSAMINCLKKIDDEE----H------KIYLA-----------------FL 148
R + L ++ + K ++A F
Sbjct: 132 SRL-----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 149 L------ETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQI 202
L ++ LQ Y+ + + + ++ I+ + LL+S
Sbjct: 187 LNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPY 243
Query: 203 HDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKL 262
+ L + + VQN + ++ + ++ + K++ + + +
Sbjct: 244 ENCLLVLLN-VQN-----AKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 263 -----DEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317
DE + L+ L +L E + S+ I
Sbjct: 296 MTLTPDEVKSLLLKY---LDCRPQDLPREV--------LTTNPRRLSI---------IAE 335
Query: 318 MAGDSLDKQQQLLHGQSTALE-----SLQLLTKFQSEALAESRNTLQELA--EYGHKQQE 370
D L H L SL +L AE R L+
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP------AEYRKMFDRLSVFPPSAHIPT 389
Query: 371 ELLKR------QEQLQEVHDHLFKNSRSILAAQEAFESK------QASMFIALDKLFALH 418
LL + + V + L K S L ++ ES + + L+ +ALH
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 419 NAMLLESRMIKAF------------FIYSLSIFIIYMLTSTKQT--YTVRPRLYI 459
+++ + K F + YS I + L + + T+ +++
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLKNIEHPERMTLFRMVFL 498
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| 3zx6_A | 341 | HAMP, methyl-accepting chemotaxis protein I; signa | 96.85 | |
| 2ch7_A | 309 | Methyl-accepting chemotaxis protein; receptor, fou | 95.72 | |
| 3g67_A | 213 | Methyl-accepting chemotaxis protein; four-helix bu | 95.3 | |
| 1qu7_A | 227 | Methyl-accepting chemotaxis protein I; serine, fou | 94.57 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 91.96 | |
| 2ch7_A | 309 | Methyl-accepting chemotaxis protein; receptor, fou | 91.41 | |
| 1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rin | 87.97 | |
| 3ghg_B | 461 | Fibrinogen beta chain; triple-stranded coiled coil | 81.87 | |
| 3g67_A | 213 | Methyl-accepting chemotaxis protein; four-helix bu | 81.77 | |
| 2l7b_A | 307 | Apolipoprotein E, APO-E; lipid transport, atherosc | 81.35 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 81.04 | |
| 3euh_A | 440 | Protein KICB, chromosome partition protein MUKF; c | 80.43 |
| >3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.45 Score=47.36 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSM 305 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m 305 (471)
+.|-.+..|+.+|.+.+.+-..+|...=+.+...+
T Consensus 181 rGFAVVAdEVRkLAe~t~~at~~I~~~i~~~~~~v 215 (341)
T 3zx6_A 181 RGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKV 215 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888877777777766444333333
|
| >2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B | Back alignment and structure |
|---|
| >3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C | Back alignment and structure |
|---|
| >1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B | Back alignment and structure |
|---|
| >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* | Back alignment and structure |
|---|
| >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* | Back alignment and structure |
|---|
| >3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C | Back alignment and structure |
|---|
| >2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00