Citrus Sinensis ID: 012122

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
cccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEEEEccccccccccccccccEEEEccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHcccEEEEEcccccHHHHHHHHccEEccccccccccccccccEEEEEEEEcEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccccHHHHHHHHHHHHHHHHcccccHHHEHEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccEEEEEEEEEccccccccccEEcccEEEEEEccEEEcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccEEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MQIQNPTAIMIARTAVaqddisgdgttSTVIFIGELMKQSercidegmhprvlVDGFEIAKRATLQFLEkfktpvvmgdepdKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGlvldhgsrhpdmkrraencyiLTCNVSleyeksevnagffysnAEQREAMVAAERRQVDEKVRRIIELKNkvcsgndnnfvvinqkgidplsLDLLARAGIIALRRAKRRNMERLVLACGgeavnsvddltpgclgwaGLVYEHVLGEEKYTfvenvknphsctilikgpndhtiAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKtlaenagldTQDVIIALKgehdrgnivglnqhsgdpidpqmegifdnysVKRQIINSGPVIASQLLLVDEVIRAgrnmrkpt
MQIQNPTAIMIARTavaqddisgdgTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLqflekfktpvvmgdepdkeILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHgsrhpdmkrraeNCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIElknkvcsgndnnFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIragrnmrkpt
MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSldllaragiialrrakrrNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
********IMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH**MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQH****IDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR*********
MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEV***********
MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
*QIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG*******
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MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMxxxxxxxxxxxxxxxxxxxxxVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q76NU3539 T-complex protein 1 subun yes no 0.987 0.860 0.638 1e-175
Q3MHL7531 T-complex protein 1 subun yes no 0.985 0.871 0.611 1e-170
P80317531 T-complex protein 1 subun yes no 0.985 0.871 0.607 1e-169
P40227531 T-complex protein 1 subun yes no 0.985 0.871 0.603 1e-168
Q5ZJ54530 T-complex protein 1 subun yes no 0.985 0.873 0.605 1e-167
O77622531 T-complex protein 1 subun yes no 0.985 0.871 0.599 1e-167
Q5RCD2531 T-complex protein 1 subun yes no 0.985 0.871 0.599 1e-167
Q3T084531 T-complex protein 1 subun no no 0.985 0.871 0.586 1e-161
O94515535 T-complex protein 1 subun yes no 0.987 0.867 0.589 1e-161
Q92526530 T-complex protein 1 subun no no 0.985 0.873 0.575 1e-161
>sp|Q76NU3|TCPZ_DICDI T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1 Back     alignment and function desciption
 Score =  613 bits (1582), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 298/467 (63%), Positives = 368/467 (78%), Gaps = 3/467 (0%)

Query: 1   MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 60
           MQIQ+PTA +IARTA AQDDI+GDGTT+ VI IGEL+KQSER + E +HPR++ +GFE+A
Sbjct: 67  MQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGFELA 126

Query: 61  KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP 120
           K   L FLE+FK      D  D+E+L  +A+T+LRTKL   LADQLT+ VV+A+L I KP
Sbjct: 127 KDRCLAFLEEFKQ--TSQDTLDRELLISIAKTSLRTKLPADLADQLTEQVVDALLLIHKP 184

Query: 121 EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKS 180
           E+ +DLFMVE+M M+H+ D    L++GLVLDHG+RHPDM ++  NC+ILTCNVSLEYEK+
Sbjct: 185 EQPLDLFMVEIMTMQHRTDGHCSLIKGLVLDHGTRHPDMPKKLTNCFILTCNVSLEYEKT 244

Query: 181 EVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240
           EVNA F Y + E R  M+  E + V  K R+IIELKN VC   D NFVVINQKGIDP+ L
Sbjct: 245 EVNANFLYKDHETRSRMIDGEHKLVAAKCRQIIELKNHVCDTPDKNFVVINQKGIDPICL 304

Query: 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTF 300
           D+LA+AGI+ LRRAKRRNMERL LACGG A+NS++DLTP CLG A LVYE  LGEEKYTF
Sbjct: 305 DMLAKAGIMGLRRAKRRNMERLTLACGGTAMNSLEDLTPDCLGHADLVYEQTLGEEKYTF 364

Query: 301 VENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYL 360
           VE VKNP SCT+LIKGP  H I QIKDA+RDGLRAVKNTIED+ VV G GAF++AA   L
Sbjct: 365 VEGVKNPFSCTVLIKGPTKHQIEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADL 424

Query: 361 VNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQH 420
           + + K+T+ GR +LG++AFADALLVVPKTLA+N+G D  D II L+ E+ +G+IVGL+  
Sbjct: 425 M-KFKETITGRTKLGIQAFADALLVVPKTLAQNSGFDPMDTIIKLQEEYAKGHIVGLDVE 483

Query: 421 SGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMR 467
           SG+P+DP  EGIFD YSV +Q+  S PVIASQLLL+DE+I+AG+ MR
Sbjct: 484 SGEPMDPVSEGIFDQYSVLKQVYRSSPVIASQLLLIDEIIKAGKGMR 530
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Dictyostelium discoideum (taxid: 44689)
>sp|Q3MHL7|TCPZ_BOVIN T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=1 SV=3 Back     alignment and function description
>sp|P80317|TCPZ_MOUSE T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3 Back     alignment and function description
>sp|P40227|TCPZ_HUMAN T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3 Back     alignment and function description
>sp|Q5ZJ54|TCPZ_CHICK T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3 Back     alignment and function description
>sp|O77622|TCPZ_RABIT T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3 Back     alignment and function description
>sp|Q5RCD2|TCPZ_PONAB T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3 Back     alignment and function description
>sp|Q3T084|TCPW_BOVIN T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3 Back     alignment and function description
>sp|O94515|TCPZ_SCHPO T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct6 PE=3 SV=1 Back     alignment and function description
>sp|Q92526|TCPW_HUMAN T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
225451999535 PREDICTED: T-complex protein 1 subunit z 0.997 0.876 0.942 0.0
302399067535 TCP domain class transcription factor [M 1.0 0.878 0.938 0.0
449447490535 PREDICTED: T-complex protein 1 subunit z 1.0 0.878 0.929 0.0
255551408535 chaperonin containing t-complex protein 0.997 0.876 0.929 0.0
356569084535 PREDICTED: T-complex protein 1 subunit z 1.0 0.878 0.927 0.0
224127642535 predicted protein [Populus trichocarpa] 1.0 0.878 0.921 0.0
118486677535 unknown [Populus trichocarpa] 1.0 0.878 0.921 0.0
356527473535 PREDICTED: T-complex protein 1 subunit z 1.0 0.878 0.923 0.0
90657661535 hypothetical protein [Cleome spinosa] 1.0 0.878 0.921 0.0
14423532535 putative chaperonin [Arabidopsis thalian 1.0 0.878 0.910 0.0
>gi|225451999|ref|XP_002283510.1| PREDICTED: T-complex protein 1 subunit zeta [Vitis vinifera] gi|296087296|emb|CBI33670.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/469 (94%), Positives = 461/469 (98%)

Query: 1   MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 60
           MQIQNPTAIMIARTAVAQDD SGDGTTSTV+FIGELMKQSER IDEGMHPRVLVDGFEIA
Sbjct: 66  MQIQNPTAIMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERYIDEGMHPRVLVDGFEIA 125

Query: 61  KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP 120
           KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYE++ADQLTDIVVNAVLCIRKP
Sbjct: 126 KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYEAMADQLTDIVVNAVLCIRKP 185

Query: 121 EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKS 180
           EE IDLFMVE+MHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILT NVSLEY+KS
Sbjct: 186 EEGIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTSNVSLEYDKS 245

Query: 181 EVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240
           E+NAGFFYS+AEQREAMVAAERRQVDE+V++IIELKNKVCSGNDNNFVVINQKGIDP SL
Sbjct: 246 EINAGFFYSSAEQREAMVAAERRQVDERVKKIIELKNKVCSGNDNNFVVINQKGIDPPSL 305

Query: 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTF 300
           DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTP CLGWAGLVYEH+LGEEKYTF
Sbjct: 306 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHILGEEKYTF 365

Query: 301 VENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYL 360
           VENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLR+VKNT+EDE+VVLGAGAFEVAARQYL
Sbjct: 366 VENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTMEDESVVLGAGAFEVAARQYL 425

Query: 361 VNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQH 420
           VNEVKKTV+GRAQLGVEAFADALLVVPKTLAEN+GLDTQDVIIAL GEHDRGN+VGLNQH
Sbjct: 426 VNEVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVIIALTGEHDRGNVVGLNQH 485

Query: 421 SGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 469
           +G+PIDP MEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP
Sbjct: 486 TGEPIDPHMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302399067|gb|ADL36828.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449447490|ref|XP_004141501.1| PREDICTED: T-complex protein 1 subunit zeta-like [Cucumis sativus] gi|449481446|ref|XP_004156185.1| PREDICTED: T-complex protein 1 subunit zeta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551408|ref|XP_002516750.1| chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative [Ricinus communis] gi|223544123|gb|EEF45648.1| chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356569084|ref|XP_003552736.1| PREDICTED: T-complex protein 1 subunit zeta-like [Glycine max] Back     alignment and taxonomy information
>gi|224127642|ref|XP_002329328.1| predicted protein [Populus trichocarpa] gi|222870782|gb|EEF07913.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486677|gb|ABK95175.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527473|ref|XP_003532334.1| PREDICTED: T-complex protein 1 subunit zeta-like [Glycine max] Back     alignment and taxonomy information
>gi|90657661|gb|ABD96959.1| hypothetical protein [Cleome spinosa] Back     alignment and taxonomy information
>gi|14423532|gb|AAK62448.1|AF387003_1 putative chaperonin [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2076924535 AT3G02530 [Arabidopsis thalian 1.0 0.878 0.874 3e-220
TAIR|locus:2146082535 AT5G16070 [Arabidopsis thalian 0.997 0.876 0.876 1.2e-216
DICTYBASE|DDB_G0277493539 cct6 "chaperonin containing TC 0.987 0.860 0.608 2.4e-147
ZFIN|ZDB-GENE-011018-2531 cct6a "chaperonin containing T 0.985 0.871 0.590 1.1e-144
UNIPROTKB|Q3MHS9531 Cct6a "Chaperonin subunit 6a ( 0.985 0.871 0.575 3.6e-144
UNIPROTKB|Q3MHL7531 CCT6A "T-complex protein 1 sub 0.985 0.871 0.579 4.6e-144
MGI|MGI:107943531 Cct6a "chaperonin containing T 0.985 0.871 0.577 4.6e-144
UNIPROTKB|F1RIU3531 CCT6A "Uncharacterized protein 0.985 0.871 0.577 5.9e-144
UNIPROTKB|B4DPJ8500 CCT6A "cDNA FLJ52344, highly s 0.985 0.926 0.575 9.6e-144
UNIPROTKB|P40227531 CCT6A "T-complex protein 1 sub 0.985 0.871 0.575 9.6e-144
TAIR|locus:2076924 AT3G02530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2127 (753.8 bits), Expect = 3.0e-220, P = 3.0e-220
 Identities = 411/470 (87%), Positives = 437/470 (92%)

Query:     1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 60
             MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA
Sbjct:    66 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 125

Query:    61 KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP 120
             KRATLQFL+ FKTPVVMGDEPDKEILKMVARTTLRTKLYE LADQLTDIVVN+VLCIRKP
Sbjct:   126 KRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKP 185

Query:   121 EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKS 180
             +E IDLFMVE+MHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENC+ILTCNVSLEYEKS
Sbjct:   186 QEPIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSLEYEKS 245

Query:   181 EVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSX 240
             E+NAGFFYSNAEQREAMV AERR VDE+V++IIELKNKVC+GNDN+FV++NQKGIDP S 
Sbjct:   246 EINAGFFYSNAEQREAMVTAERRSVDERVQKIIELKNKVCAGNDNSFVILNQKGIDPPSL 305

Query:   241 XXXXXXXXXXXXXXXXXNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTF 300
                              NMERLVLACGGEAVNSVDDLTP CLGWAGLVYEHVLGEEKYTF
Sbjct:   306 DLLAREGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHVLGEEKYTF 365

Query:   301 VENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYL 360
             VE VKNPHSCTILIKGPNDHTIAQIKDAVRDGLR+VKNT+EDE VVLGAGAFEVAARQ+L
Sbjct:   366 VEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTLEDECVVLGAGAFEVAARQHL 425

Query:   361 VNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQH 420
             +NEVKKTV+GRAQLGVEAFA+ALLVVPKTLAENAGLDTQDVII+L  EHD+GNIVGL+  
Sbjct:   426 INEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTSEHDKGNIVGLDLQ 485

Query:   421 SGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT 470
              G+P+DPQ+ GIFDNYSVKRQ+INSGPVIASQLLLVDEVIRAGRNMRKPT
Sbjct:   486 DGEPVDPQLAGIFDNYSVKRQLINSGPVIASQLLLVDEVIRAGRNMRKPT 535
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0016020 "membrane" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
TAIR|locus:2146082 AT5G16070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277493 cct6 "chaperonin containing TCP1 zeta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-011018-2 cct6a "chaperonin containing TCP1, subunit 6A (zeta 1)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHS9 Cct6a "Chaperonin subunit 6a (Zeta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHL7 CCT6A "T-complex protein 1 subunit zeta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:107943 Cct6a "chaperonin containing Tcp1, subunit 6a (zeta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIU3 CCT6A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B4DPJ8 CCT6A "cDNA FLJ52344, highly similar to T-complex protein 1 subunit zeta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P40227 CCT6A "T-complex protein 1 subunit zeta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T8THSB_SULSONo assigned EC number0.34460.95740.8122yesno
Q9V2T4THSB_SULACNo assigned EC number0.32840.97230.8264yesno
P40227TCPZ_HUMANNo assigned EC number0.60340.98510.8719yesno
P46550TCPZ_CAEELNo assigned EC number0.59490.97870.8534yesno
O77622TCPZ_RABITNo assigned EC number0.59910.98510.8719yesno
Q76NU3TCPZ_DICDINo assigned EC number0.63810.98720.8608yesno
P48424THSA_THEACNo assigned EC number0.34110.95740.8256yesno
Q3MHL7TCPZ_BOVINNo assigned EC number0.61190.98510.8719yesno
Q9V2Q7THS_PYRABNo assigned EC number0.35100.95530.8163yesno
P80317TCPZ_MOUSENo assigned EC number0.60760.98510.8719yesno
O26885THSB_METTHNo assigned EC number0.33970.93610.8178yesno
O57762THS_PYRHONo assigned EC number0.35620.95530.8178yesno
O94515TCPZ_SCHPONo assigned EC number0.58930.98720.8672yesno
O28821THSB_ARCFUNo assigned EC number0.35830.95530.8238yesno
Q5RCD2TCPZ_PONABNo assigned EC number0.59910.98510.8719yesno
O30561THS1_HALVDNo assigned EC number0.35340.95530.8017yesno
Q52500THSB_PYRKONo assigned EC number0.35650.94680.8150yesno
Q9YA66THSB_AERPENo assigned EC number0.34680.95530.8193yesno
P50016THS_METKANo assigned EC number0.36780.96380.8311yesno
Q58405THS_METJANo assigned EC number0.33760.95530.8284yesno
P39079TCPZ_YEASTNo assigned EC number0.5250.99780.8589yesno
Q5ZJ54TCPZ_CHICKNo assigned EC number0.60550.98510.8735yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.765
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.752
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.727
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
  ••••••0.699
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.668
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.663
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.636
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.625
GSVIVG00017910001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)
  ••    0.620
GSVIVG00023929001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)
  ••    0.598

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 0.0
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-160
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-160
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-115
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-115
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-105
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-69
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-68
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 7e-68
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 5e-65
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-63
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 2e-62
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 4e-62
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 4e-62
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 7e-61
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 9e-61
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 9e-60
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 2e-59
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 5e-53
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 2e-52
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 2e-47
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 7e-46
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 4e-10
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 6e-07
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-05
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 2e-05
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 7e-04
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.001
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 0.001
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 0.002
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.003
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.003
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information 
 Score =  802 bits (2074), Expect = 0.0
 Identities = 332/470 (70%), Positives = 398/470 (84%), Gaps = 5/470 (1%)

Query: 1   MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 60
           MQIQ+PTA MIAR A AQD+I+GDGTTSTVI IGEL+KQ+ER I EG+HPR++ +GFEIA
Sbjct: 65  MQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIA 124

Query: 61  KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP 120
           ++  L+FL+KFK  V   DE D+E L  VART+LRTKL   LADQLT+IVV+AVL I+K 
Sbjct: 125 RKELLEFLDKFK--VKTEDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD 182

Query: 121 EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKS 180
            E IDLFMVE+M M+HK   DT L+ GLVLDHG+RHPDM RR +N YILTCNVSLEYEK+
Sbjct: 183 GEDIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKT 242

Query: 181 EVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCS-GNDNNFVVINQKGIDPLS 239
           EVN+GFFYS+AEQRE +VAAER+ VD++V++IIELK KVC    D  FVVINQKGIDP S
Sbjct: 243 EVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPS 302

Query: 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYT 299
           LDLLA+ GI+ALRRAKRRNMERL LACGGEA+NSV+DLTP CLGWAGLVYE  +GEEKYT
Sbjct: 303 LDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYT 362

Query: 300 FVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQY 359
           F+E VKNP SCTILIKGPNDHTIAQIKDAVRDGLRAVKN IED+ VV GAGAFE+AA ++
Sbjct: 363 FIEEVKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRH 422

Query: 360 LVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRG-NIVGLN 418
           L  E KK+V+G+A+LGVEAFA+ALLV+PKTLAEN+G D QD ++ L+ EHD G  +VG++
Sbjct: 423 L-KENKKSVKGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVD 481

Query: 419 QHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 468
            ++G+PIDP+++GI+DNY VK+Q+I S  VIASQLLLVDEV+RAGR+M K
Sbjct: 482 LNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSMLK 531

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.84
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information 
Probab=100.00  E-value=2.4e-94  Score=757.63  Aligned_cols=465  Identities=72%  Similarity=1.101  Sum_probs=436.9

Q ss_pred             CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122            1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE   80 (470)
Q Consensus         1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~   80 (470)
                      |+++||+++|+.++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++++.  +.
T Consensus        65 i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~  142 (531)
T TIGR02347        65 MQIQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE--DE  142 (531)
T ss_pred             ccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC--CC
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999997652  12


Q ss_pred             CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122           81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK  160 (470)
Q Consensus        81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~  160 (470)
                      .+.+.|.++|+|+++||+.+.+.++|++++++|+..+.+.+..+|+++|+++++.|++.++|++++|++|++++.+|+|+
T Consensus       143 ~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~  222 (531)
T TIGR02347       143 VDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMP  222 (531)
T ss_pred             CCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCc
Confidence            36889999999999999999999999999999999997643358888999999999999999999999999999999999


Q ss_pred             cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCceEEEecCCCCHHH
Q 012122          161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGN-DNNFVVINQKGIDPLS  239 (470)
Q Consensus       161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~-~~~~vIi~~~~i~~~~  239 (470)
                      ++++||||++++++|++.+++.++.+.+++++|+..+++.|++++++++++|+++++..|... +.+++|+++++|+|.+
T Consensus       223 ~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a  302 (531)
T TIGR02347       223 RRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPS  302 (531)
T ss_pred             eeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHH
Confidence            999999999999999999999999999999999999999999999999999999875433100 1234899999999999


Q ss_pred             HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCH
Q 012122          240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPND  319 (470)
Q Consensus       240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~  319 (470)
                      ++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++..+|+++|++|+++++++.+||+|||+|+
T Consensus       303 ~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~  382 (531)
T TIGR02347       303 LDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPND  382 (531)
T ss_pred             HHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122          320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ  399 (470)
Q Consensus       320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~  399 (470)
                      .+++|++|+++||++++++++++|++||||||+|++++.+| ++++...++++|+++++|++||+.||++|++|||+|+.
T Consensus       383 ~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l-~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~  461 (531)
T TIGR02347       383 HTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHL-KEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQ  461 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            99999999999999999999999999999999999999999 88888888999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCCCC
Q 012122          400 DVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK  468 (470)
Q Consensus       400 ~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~~~  468 (470)
                      +++.+|++.|.. +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|.++|...|
T Consensus       462 ~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~~~  531 (531)
T TIGR02347       462 DTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSMLK  531 (531)
T ss_pred             HHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccccCC
Confidence            999999998854 367899999999999999999999999999999999999999999999998876543

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-156
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-130
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-64
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-64
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-64
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-61
1a6d_A545 Thermosome From T. Acidophilum Length = 545 1e-59
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 3e-56
3izh_A513 Mm-Cpn D386a With Atp Length = 513 3e-56
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 4e-55
3izi_A513 Mm-Cpn Rls With Atp Length = 513 4e-55
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 1e-53
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 8e-53
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 9e-53
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 6e-52
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-51
1a6d_B543 Thermosome From T. Acidophilum Length = 543 7e-51
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-44
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-43
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-42
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-40
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-37
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-37
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-37
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-36
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-33
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-33
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-28
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-27
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-24
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-13
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 1e-12
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 8e-11
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 2e-08
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure 
Iteration: 1

 Score =  549 bits (1415), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/465 (58%), Positives = 354/465 (76%), Gaps = 8/465 (1%)
Query: 1   MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 60
           MQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE A
Sbjct: 59  MQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAA 118
Query: 61  KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP 120
           K   LQFLE+ K    +  E D+E L  VART+LRTK++  LAD LT+ VV+++L I+K 
Sbjct: 119 KEKALQFLEQVK----VSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ 174
Query: 121 EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKS 180
           +E IDLFMVE+M M+HK + DT L+ GLVLDHG+RHPDMK+R E+ YILTCNVSLEYEK+
Sbjct: 175 DEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT 234
Query: 181 EVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSX 240
           EVN+GFFY +AE+RE +V AER+ ++++V++IIELK KVC  +D  FVVINQKGIDP S 
Sbjct: 235 EVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSL 294
Query: 241 XXXXXXXXXXXXXXXXXNMERLVLACGGEAVNSVDDLTPGC-LGWAGLVYEHVLGEEKYT 299
                            NMERL LACGG A+NS+DDL P C LG AG VYE+ LGEEK+T
Sbjct: 295 DALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFT 353
Query: 300 FVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQY 359
           F+E   NP S T+LIKGPN HT+ QIKDA+RDGLRAVKN I+D  VV GAGA EVA  + 
Sbjct: 354 FIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEA 413
Query: 360 LVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLN 418
           LV + K +V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++
Sbjct: 414 LV-KYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVD 472
Query: 419 QHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 463
            ++G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG
Sbjct: 473 LNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG 517
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-178
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-152
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-141
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 1e-140
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 1e-131
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-130
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-130
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-129
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-127
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-126
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-125
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-124
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-124
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-124
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-121
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-120
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-120
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-117
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-113
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 3e-80
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 5e-70
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
 Score =  636 bits (1643), Expect = 0.0
 Identities = 280/464 (60%), Positives = 363/464 (78%), Gaps = 6/464 (1%)

Query: 1   MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 60
           MQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE A
Sbjct: 59  MQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAA 118

Query: 61  KRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP 120
           K   LQFLE+ K       E D+E L  VART+LRTK++  LAD LT+ VV+++L I+K 
Sbjct: 119 KEKALQFLEQVKVSK----EMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ 174

Query: 121 EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKS 180
           +E IDLFMVE+M M+HK + DT L+ GLVLDHG+RHPDMK+R E+ YILTCNVSLEYEK+
Sbjct: 175 DEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT 234

Query: 181 EVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240
           EVN+GFFY +AE+RE +V AER+ ++++V++IIELK KVC  +D  FVVINQKGIDP SL
Sbjct: 235 EVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSL 294

Query: 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTF 300
           D LA+ GIIALRRAKRRNMERL LACGG A+NS+DDL P CL     VYE+ LGEEK+TF
Sbjct: 295 DALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTF 354

Query: 301 VENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYL 360
           +E   NP S T+LIKGPN HT+ QIKDA+RDGLRAVKN I+D  VV GAGA EVA  + L
Sbjct: 355 IEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEAL 414

Query: 361 VNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN-IVGLNQ 419
             + K +V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH     +VG++ 
Sbjct: 415 -VKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDL 473

Query: 420 HSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 463
           ++G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG
Sbjct: 474 NTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG 517
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.38
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.37
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.36
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=3.1e-101  Score=806.75  Aligned_cols=457  Identities=62%  Similarity=1.002  Sum_probs=440.7

Q ss_pred             CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122            1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE   80 (470)
Q Consensus         1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~   80 (470)
                      |+++||+|+|++++|++||+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.+++.|++++++++    
T Consensus        59 i~v~hp~akll~~~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~----  134 (517)
T 3iyg_Z           59 MQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE----  134 (517)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCC----
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999885    


Q ss_pred             CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122           81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK  160 (470)
Q Consensus        81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~  160 (470)
                      .+++.|.++|+|+++||+.+.+.++|+++++||++.+.+++..+|+++|+|+|++|++..||++++|++|++++.+|+||
T Consensus       135 ~~~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~  214 (517)
T 3iyg_Z          135 MDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMK  214 (517)
T ss_pred             CCHHHHHHHHHHHhccccchhHHHHHHHHHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCCcc
Confidence            27889999999999999999999999999999999998754578999999999999999999999999999999999999


Q ss_pred             cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHH
Q 012122          161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL  240 (470)
Q Consensus       161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l  240 (470)
                      ++++||||++++++|+++++++++++.++++++++.+++.|++++++++++|++++++.|+.+++|+||+++++|++.++
T Consensus       215 ~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al  294 (517)
T 3iyg_Z          215 KRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSL  294 (517)
T ss_pred             ccccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999877755577899999999999999


Q ss_pred             HHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCC-CcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCH
Q 012122          241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGC-LGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPND  319 (470)
Q Consensus       241 ~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~  319 (470)
                      +||.++||++++++++++|+|||++|||+++++++++++++ +|+|+ |++.++|+++|++|++|++++.|||+|||+|+
T Consensus       295 ~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~lrG~t~  373 (517)
T 3iyg_Z          295 DALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNK  373 (517)
T ss_pred             HHHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCchhheeeecCCcH
Confidence            99999999999999999999999999999999999999999 99999 99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122          320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ  399 (470)
Q Consensus       320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~  399 (470)
                      .+++|.+|+++|||+++|+++++|++|||||++|++++.+| ++++.+.++++|+++++||+|||.+|++|++|||+|+.
T Consensus       374 ~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L-~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~  452 (517)
T 3iyg_Z          374 HTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEAL-VKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQ  452 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999 89998889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc-CCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcC
Q 012122          400 DVIIALKGEHD-RGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG  463 (470)
Q Consensus       400 ~~i~~l~~~~~-~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~  463 (470)
                      +++.+|++.|. ++.++|||+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|.++
T Consensus       453 ~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  517 (517)
T 3iyg_Z          453 ETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG  517 (517)
T ss_pred             HHHHHHHHHHhcCCCcEEEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999985 45789999999999999999999999999999999999999999999999864
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-41
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 1e-40
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 6e-40
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 1e-38
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-21
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-09
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-19
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-09
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-16
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 3e-16
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 8e-16
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 8e-12
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-06
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  144 bits (363), Expect = 1e-41
 Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 141 DTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAA 200
           D+ ++ G++++    HP M+R  +N  I+  + SLEY+K E       +  E    ++  
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60

Query: 201 ERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNME 260
           E   + +    II+LK  V          I +KGI  L+   L RA + A+RR ++ +  
Sbjct: 61  EEEYIHQLCEDIIQLKPDVV---------ITEKGISDLAQHYLMRANVTAIRRVRKTDNN 111

Query: 261 RLVLACGGEAVNSVDDLTPGCLGW-AGLVYEHVLGEEKYTFVENVKNPHSCTILIKG 316
           R+  ACG   V+  ++L    +G  AGL+    +G+E +TF+ + K+P +CTIL++G
Sbjct: 112 RIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.98
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.98
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.98
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.93
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.84
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.63
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.6
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.52
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.48
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.4
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.38
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.37
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.34
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.33
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.17
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.14
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 98.9
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 95.16
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 88.79
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 88.13
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 86.32
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 81.71
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 80.8
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=7.4e-38  Score=294.18  Aligned_cols=113  Identities=35%  Similarity=0.556  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhcc-CCCeeeEEccCCCccC
Q 012122          348 GAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHD-RGNIVGLNQHSGDPID  426 (470)
Q Consensus       348 GGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~-~~~~~gid~~~~~~~d  426 (470)
                      |||++|+.+|..+ .++++++++++|+++++|++||+.||++|++|||+|+.+++.+|+..|. ++.++|+|..+|++.|
T Consensus       130 ggGa~e~~~a~~l-~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d  208 (243)
T d1a6db1         130 GGGATAAEIAFRL-RSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIED  208 (243)
T ss_dssp             TTTHHHHHHHHHH-HHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEE
T ss_pred             CCCchhHHHHHHH-hhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEee
Confidence            6999999999999 9999999999999999999999999999999999999999999999984 4578999999999999


Q ss_pred             cccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012122          427 PQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR  461 (470)
Q Consensus       427 ~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~  461 (470)
                      |.+.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus       209 ~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         209 MVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             TTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             hHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999873
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure