Citrus Sinensis ID: 012196


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MITAKSPTFELKNDHQETKPMMGINKSFKKRGQLGNGIDGDHHESDNNSATKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFNSDKAESAVSRWERARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHPIDDDIPPKASDSKELKLDSSAKVDVETKNVSTAAGALINEEEEDPKLNYNSNNNDVEAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQLQFHALEQVNLSPRPGPSSIASSSIMNAPVPSPRPSPKILLSPRLSCMGLSSPSPRSGQIHVRQ
ccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccEEEEEcccccccccccccHHHHHHHccccccccccccEEEEEEccEEEEcccccEEEcccccEEEEEEEccccEEEEEcccccEEcccccccccccEEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHHHccHHHHHHEEEEEEccEEEEEEccEEEEcccccEEEEEEEcccEEEEEEcccccEEcccHccccHEEEcEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHcccccccEEcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEccHHHHcccccccccccEEEEcc
mitaksptfelkndhqetkpmmginksfkkrgqlgngidgdhhesdnnsaTKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAAltrssvsffnsdkaeSAVSRWERARIRAAKLGKGLCKDEKAQKLALRHWLEaidprhryghnLHLYYEVWFasestqpffywldigdgkevnvakcprndlqhqcikylgpkereTYEVVIENGKLLYRQSRVcvstvegsKWIFVLSTSRKlyvgekkkglfqhssflaggatiaSGRLVVLDGILEaiwpfsghyrpteeNFMEFCSFLEDHQVdltnvkkhpidddippkasdskelkldssakvdvetkNVSTAAGAlineeeedpklnynsnnndveaeaevfeidddqkplsrkiwttgagpriscvrdyptqlqFHALEqvnlsprpgpssiasssimnapvpsprpspkillsprlscmglsspsprsgqihvrq
mitaksptfelkndhqetkpmmginKSFKKRGQLGNGIdgdhhesdnnsaTKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAaltrssvsffnsdkaesavsrWERARIRAAklgkglckdEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKylgpkereTYEVVIENGKLLYRQSRVcvstvegskwifVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKkhpidddippkasdskelkldssakvdvetknVSTAagalineeeedpklnynSNNNDVEAEAEVfeidddqkplsrkiwttgagprisCVRDYPTQLQFHALEQVNLSPRPGPSSIASSSIMNAPVPSPRPSPKILLSPRLScmglsspsprsgqihvrq
MITAKSPTFELKNDHQETKPMMGINKSFKKRGQLGNGIDGDHHESDNNSATKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFNSDKAESAVSRWERARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHPIDDDIPPKASDSKELKLDSSAKVDVETKNVSTAAGALINEEEEDPKLNYNSNNNDVEAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQLQFHALEQVNLSPRPGPSSIASSSIMNAPVPSPRPSPKILLSPRLSCMGLSSPSPRSGQIHVRQ
*****************************************************QKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFNSD***SAVSRWERARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNV*****************************************************************************RKIWTTGAGPRISCVRDYPTQLQFHALE*********************************************************
****************************************************LQKFYKSYRTRRNLADCAVVVEELWWKELDR**********************************************ALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHPIDD*******************************************************************************PRISCVRDYPTQLQFHALE*********************************************************
MITAKSPTFELKNDHQETKPMMGINKSFKKRGQLGNGIDGDHHESDNNSATKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFN**********WERARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHPIDDDIPPKASDSKELKLDSSAKVDVETKNVSTAAGALINEEEEDPKLNYNSNNNDVEAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQLQFHALEQVNLSPRPGPSSIASSSIMNAPVPSPRPSPKILLSPRLSCMG***************
*******************************************ESDNNSATKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFNSDKAESAVSRWERARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHP********************************************************EAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQLQFHALEQVNLS***************APVPSPRPSPKILLSPRLSCMGLSSPSPRSG******
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MITAKSPTFELKNDHQETKPMMGINKSFKKRGQLGNGIDGDHHESDNNSATKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFNSDKAESAVSRWERARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHPIDDDIPPKASDSKELKLDSSAKVDVETKNVSTAAGALINEEEEDPKLNYNSNNNDVEAEAEVFEIDDDQKPLSRKIWTTGAGPRISCVRDYPTQLQFHALEQVNLSPRPGPSSIASSSIMNAPVPSPRPSPKILLSPRLSCMGLSSPSPRSGQIHVRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
147846155 958 hypothetical protein VITISV_000215 [Viti 0.869 0.424 0.657 1e-155
225442208554 PREDICTED: uncharacterized protein LOC10 0.861 0.727 0.662 1e-154
225444875535 PREDICTED: uncharacterized protein LOC10 0.841 0.736 0.663 1e-154
147859065544 hypothetical protein VITISV_024541 [Viti 0.841 0.724 0.663 1e-153
356522178511 PREDICTED: uncharacterized protein LOC10 0.835 0.765 0.643 1e-149
255546139541 calmodulin binding protein, putative [Ri 0.856 0.741 0.662 1e-149
356561925530 PREDICTED: uncharacterized protein LOC10 0.841 0.743 0.636 1e-148
357449901508 Calmodulin-binding protein [Medicago tru 0.835 0.769 0.628 1e-147
224142786531 predicted protein [Populus trichocarpa] 0.846 0.745 0.639 1e-147
255550071519 calmodulin binding protein, putative [Ri 0.846 0.763 0.632 1e-147
>gi|147846155|emb|CAN81630.1| hypothetical protein VITISV_000215 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/420 (65%), Positives = 316/420 (75%), Gaps = 13/420 (3%)

Query: 49  SATKLQKFYKSYRTRRNLADCAVVVEELWWKELDRAALTRSSVSFFNSDKAESAVSRWER 108
           +A KLQK YKSYRTRRNLADCAVVVEELWWK LD A L RSSVSFFN +K E+AVSRW R
Sbjct: 139 AAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFATLKRSSVSFFNIEKPETAVSRWAR 198

Query: 109 ARIRAAKLGKGLCKDEKAQKLALRHWLEAIDPRHRYGHNLHLYYEVWFASESTQPFFYWL 168
           A  RAAK+GKGL KDEKA+KLALRHWLEAIDPRHRYGHNLHLYY+VWF SES+QPFFYWL
Sbjct: 199 ASTRAAKVGKGLSKDEKAKKLALRHWLEAIDPRHRYGHNLHLYYDVWFHSESSQPFFYWL 258

Query: 169 DIGDGKEVNVAKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKW 228
           D+GDGKE+N+ KC R  LQ QCIKYL PKERE YEV++E+GKL+Y +S   V+TVEGSKW
Sbjct: 259 DVGDGKELNLEKCSRAVLQRQCIKYLAPKEREAYEVIVEDGKLVYWRSGELVNTVEGSKW 318

Query: 229 IFVLSTSRKLYVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEEN 288
           IFVLSTSR +YV EKKKG FQHSSFLAGGAT A+GRLV  +G+LEAIWP+SGHY PTEEN
Sbjct: 319 IFVLSTSRNMYVAEKKKGRFQHSSFLAGGATTAAGRLVAHNGVLEAIWPYSGHYHPTEEN 378

Query: 289 FMEFCSFLEDHQVDLTNVKKHPIDDDIPPKASDSKELKLDSSAKVDVETKNVSTAAGALI 348
           FMEF SFLE+H VDLTNVK+  +DDD P       ELK   SA+   E+  +S AA A  
Sbjct: 379 FMEFISFLEEHHVDLTNVKRCAVDDDNPTLKMADSELKSSDSARFPSESITISEAADA-- 436

Query: 349 NEEEEDPKLNYNSNNNDVEAEAEVFEIDDDQKP---LSRKI---WTTGAGPRISCVRDYP 402
                D  +   +    +  E  V  I  D +P   L +++   WTTGAGPRI  +RDYP
Sbjct: 437 -----DGVITQEAKPTAIHQEDNVGRIGTDIEPAFGLGKRLSCQWTTGAGPRIRVLRDYP 491

Query: 403 TQLQFHALEQVNLSPRPGPSSIASSSIMNAPVPSPRPSPKILLSPRLSCMGLSSPSPRSG 462
            +L+  ALEQVNLSPR  P +  SSSI   P+PSPRPSPKI LSPRLS MGL SP  + G
Sbjct: 492 AELKIRALEQVNLSPRINPGAFGSSSIPVLPIPSPRPSPKIHLSPRLSYMGLPSPREKEG 551




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442208|ref|XP_002274686.1| PREDICTED: uncharacterized protein LOC100263563 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444875|ref|XP_002279373.1| PREDICTED: uncharacterized protein LOC100256072 [Vitis vinifera] gi|297738645|emb|CBI27890.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859065|emb|CAN80416.1| hypothetical protein VITISV_024541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522178|ref|XP_003529724.1| PREDICTED: uncharacterized protein LOC100783559 [Glycine max] Back     alignment and taxonomy information
>gi|255546139|ref|XP_002514129.1| calmodulin binding protein, putative [Ricinus communis] gi|223546585|gb|EEF48083.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356561925|ref|XP_003549227.1| PREDICTED: uncharacterized protein LOC100776993 [Glycine max] Back     alignment and taxonomy information
>gi|357449901|ref|XP_003595227.1| Calmodulin-binding protein [Medicago truncatula] gi|355484275|gb|AES65478.1| Calmodulin-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224142786|ref|XP_002324731.1| predicted protein [Populus trichocarpa] gi|222866165|gb|EEF03296.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550071|ref|XP_002516086.1| calmodulin binding protein, putative [Ricinus communis] gi|223544572|gb|EEF46088.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
TAIR|locus:2123817526 EDA39 "AT4G33050" [Arabidopsis 0.450 0.401 0.612 1.5e-130
TAIR|locus:2057765532 AT2G26190 "AT2G26190" [Arabido 0.645 0.567 0.646 2.1e-128
TAIR|locus:2164655495 AT5G57010 "AT5G57010" [Arabido 0.559 0.529 0.703 3.4e-126
TAIR|locus:2086819605 AT3G13600 "AT3G13600" [Arabido 0.662 0.512 0.607 9.7e-118
TAIR|locus:2076421575 AT3G58480 "AT3G58480" [Arabido 0.617 0.502 0.644 5.4e-115
TAIR|locus:2085161456 AT3G52870 "AT3G52870" [Arabido 0.598 0.614 0.533 2.6e-94
TAIR|locus:2123817 EDA39 "AT4G33050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 709 (254.6 bits), Expect = 1.5e-130, Sum P(3) = 1.5e-130
 Identities = 131/214 (61%), Positives = 168/214 (78%)

Query:   133 HWLEA-IDPRHRYGHNLHLYYEVWFASESTQPFFYWLDIGDGKEVNVAKCPRNDLQHQCI 191
             H L+  IDPRHRYGHNLH YY+VW AS+STQPFFYWLDIGDGK+VN+ K PR+ LQ QCI
Sbjct:   230 HLLKLQIDPRHRYGHNLHFYYDVWSASKSTQPFFYWLDIGDGKDVNLEKHPRSVLQKQCI 289

Query:   192 KYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKLYVGEKKKGLFQHS 251
             +YLGP ERE YEV++E+G+L+Y+Q    +++ E +K IFVLST+R LYVG KKKGLFQHS
Sbjct:   290 RYLGPMEREAYEVIVEDGRLMYKQGMTLINSTEEAKSIFVLSTTRNLYVGIKKKGLFQHS 349

Query:   252 SFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFCSFLEDHQVDLTNVKKHPI 311
             SFL+GGAT A+GRLV  DGILEAIWP+SGHY PTE+NF EF SFLE+H VDLTNVK+  +
Sbjct:   350 SFLSGGATTAAGRLVARDGILEAIWPYSGHYLPTEDNFKEFISFLEEHNVDLTNVKRCSV 409

Query:   312 DDDIPP--KASDSKELKLDSSAKVDVETKNVSTA 343
             +++       +D +E + + S +V++ ++    A
Sbjct:   410 NEEYSSFKSTADEEEERKEVSEEVEIPSEKEERA 443


GO:0005516 "calmodulin binding" evidence=ISS;IPI
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0010200 "response to chitin" evidence=IEP;RCA
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0010119 "regulation of stomatal movement" evidence=IMP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009581 "detection of external stimulus" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009625 "response to insect" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009646 "response to absence of light" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2057765 AT2G26190 "AT2G26190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164655 AT5G57010 "AT5G57010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086819 AT3G13600 "AT3G13600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076421 AT3G58480 "AT3G58480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085161 AT3G52870 "AT3G52870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00034127001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (530 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 468
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 95.41
smart0001526 IQ Short calmodulin-binding motif containing conse 94.43
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
Probab=95.41  E-value=0.014  Score=37.21  Aligned_cols=19  Identities=21%  Similarity=0.586  Sum_probs=17.6

Q ss_pred             HHHHHHHHhhhhHHHHhhc
Q 012196           48 NSATKLQKFYKSYRTRRNL   66 (468)
Q Consensus        48 ~AA~~iQk~Yr~yRtRR~l   66 (468)
                      .||++||+.||+|..|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            6999999999999999875



The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 50/390 (12%), Positives = 98/390 (25%), Gaps = 141/390 (36%)

Query: 2   ITAKSPTFELKNDHQETKP--------MMGINKS---------FKKRGQLGNGI------ 38
           ++   P  +L+    E +P        ++G  K+         +K + ++   I      
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 39  -------------------DGDHHESDNNSAT------KLQKFYKSYRTRRNLADCAVVV 73
                              D +     ++S+        +Q   +     +   +C +V+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 74  EELW----WKELD---RAALTRSSVSFFNSDKAESAVSRWERARIRAAKLGKGLCKDEKA 126
             +     W   +   +  LT       +       +S      I        L  DE  
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTD------FLSAATTTHISLDHHSMTLTPDEVK 304

Query: 127 QKLALRHWLEAID---PRH-RYGHNLHLYYEVWFASESTQPFF----YWLDIGDGKEVNV 178
             L    +L+      PR     +   L       +ES +        W      K VN 
Sbjct: 305 SLLLK--YLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNW------KHVNC 352

Query: 179 AKCPRNDLQHQCIKYLGPKERETYEVVIENGKLLYRQSRVCVSTVEGSKWIFVLSTSRKL 238
            K     +    +  L P E                                     RK+
Sbjct: 353 DK--LTTIIESSLNVLEPAE------------------------------------YRKM 374

Query: 239 YVGEKKKGLFQHSSFLAGGATIASGRLVVLDGILEAIWPFSGHYRPTEENFMEFC---SF 295
           +    +  +F  S      A I +  L ++       W             +      S 
Sbjct: 375 F---DRLSVFPPS------AHIPTILLSLI-------WFDVIKS--DVMVVVNKLHKYSL 416

Query: 296 LEDHQVDLTNVKKHPIDDDIPPKASDSKEL 325
           +E    + T +    I  ++  K  +   L
Sbjct: 417 VEKQPKEST-ISIPSIYLELKVKLENEYAL 445


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.7
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.53
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 94.26
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 91.31
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 86.43
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 82.18
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 81.0
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
Probab=95.70  E-value=0.0073  Score=42.13  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             hhhHHHHHHHHhhhhHHHHhhccCc
Q 012196           45 SDNNSATKLQKFYKSYRTRRNLADC   69 (468)
Q Consensus        45 e~~~AA~~iQk~Yr~yRtRR~lad~   69 (468)
                      .++.||+.||+.||+|+.||.+...
T Consensus         4 ~Ee~aA~vIQrA~R~yl~rr~~~~~   28 (31)
T 2l53_B            4 SEEVSAMVIQRAFRRHLLQRSLKHA   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4668999999999999999987643



>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00