Citrus Sinensis ID: 012197

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MLTQRQVASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV
cccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcEEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEcccccccEEEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccEEEEccccEEEcHHHHHccccccccccccccccccccc
ccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEHEHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccccccccccccccEEEEEEccccEEEccccccccccccccccccccHHEHcHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHccHHccccccccccHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHcccccEEEEEccccEEEcHHHHHHHcccccccccHEEEEEEEcc
MLTQRQVASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARgrfslpapvmphnhqwapshaiVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCralmpgdeesisdeAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCtkwynpaihrqscirepsssttavryldwsrgivvvgdddqqqncrmcnlqtigghimkiPFICFQIMLFMYLegtpsrarniplrVIFAPLLLLQATGVLFAVYRLLEKIYLLVHsgpafgywSIASKARDclgfmhhgsrllgwwsidegsrEELAGLYCAEtkisgyntfppeivkkmpksgLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINilllpcrhhilcrtcgekckkcpicrvfieerlpiydv
MLTQRQVASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHrqscirepssstTAVRYLDWSRGIVvvgdddqqqNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETkisgyntfppeIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRtcgekckkcpicrvfieerlpiydv
MLTQRQVASWGRVFKSLQAVLAHGllftftlllslklDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV
******VASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIY**
*************FKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNP******************************************NLQTIGGHIMKIPFICFQIMLFMYLEGTPS*ARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRL***************************************************************************ILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV
********SWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV
*******ASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHR*********STTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLTQRQVASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALETAILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGVLFAVYRLLEKIYLLVHSGPAFGYWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query468 2.2.26 [Sep-21-2011]
P98170497 E3 ubiquitin-protein liga yes no 0.209 0.197 0.326 7e-08
Q7M3S9943 RING finger protein B OS= yes no 0.123 0.061 0.457 1e-07
Q9R0I6496 E3 ubiquitin-protein liga yes no 0.209 0.197 0.316 5e-07
Q60989496 E3 ubiquitin-protein liga yes no 0.170 0.161 0.337 6e-07
A1E2V0604 Baculoviral IAP repeat-co yes no 0.102 0.079 0.387 9e-07
Q13489604 Baculoviral IAP repeat-co no no 0.111 0.086 0.358 1e-06
Q90660611 Inhibitor of apoptosis pr yes no 0.111 0.085 0.358 2e-06
Q5BKL8492 E3 ubiquitin-protein liga yes no 0.153 0.146 0.328 2e-06
O08863600 Baculoviral IAP repeat-co no no 0.111 0.086 0.339 2e-06
Q13490618 Baculoviral IAP repeat-co no no 0.111 0.084 0.339 3e-06
>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2 Back     alignment and function desciption
 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 366 KISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEKILCRICF 425
           +ISG N    E++     +   D +    +  S Q EI+  ++++  RLQ EK LC+IC 
Sbjct: 398 QISGSNYKSLEVLVADLVNAQKDSMQDESSQTSLQKEIS--TEEQLRRLQEEK-LCKICM 454

Query: 426 EEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIY 466
           +  I I+ +PC H + C+ C E   KCP+C   I  +  I+
Sbjct: 455 DRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 495
Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, copper homeostasis, mitogenic kinase signaling, cell proliferation, as well as cell invasion and metastasis. Acts as a direct caspase inhibitor. Directly bind to the active site pocket of CASP3 and CASP7 and obstructs substrate entry. Inactivates CASP9 by keeping it in a monomeric, inactive state. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and the target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, CASP3, CASP7, CASP8, CASP9, MAP3K2/MEKK2, DIABLO/SMAC, AIFM1, CCS and BIRC5/survivin. Ubiquitinion of CCS leads to enhancement of its chaperone activity toward its physiologic target, SOD1, rather than proteasomal degradation. Ubiquitinion of MAP3K2/MEKK2 and AIFM1 does not lead to proteasomal degradation. Plays a role in copper homeostasis by ubiquitinationg COMMD1 and promoting its proteasomal degradation. Can also function as E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Regulates the BMP signaling pathway and the SMAD and MAP3K7/TAK1 dependent pathways leading to NF-kappa-B and JNK activation. Acts as an important regulator of innate immune signaling via regulation of Nodlike receptors (NLRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Acts as a positive regulator of Wnt signaling and ubiquitinates TLE1, TLE2, TLE3, TLE4 and AES. Ubiquitination of TLE3 results in inhibition of its interaction with TCF7L2/TCF4 thereby allowing efficient recruitment and binding of the transcriptional coactivator beta-catenin to TCF7L2/TCF4 that is required to initiate a Wnt-specific transcriptional program.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2 Back     alignment and function description
>sp|Q9R0I6|XIAP_RAT E3 ubiquitin-protein ligase XIAP OS=Rattus norvegicus GN=Xiap PE=2 SV=1 Back     alignment and function description
>sp|Q60989|XIAP_MOUSE E3 ubiquitin-protein ligase XIAP OS=Mus musculus GN=Xiap PE=1 SV=2 Back     alignment and function description
>sp|A1E2V0|BIRC3_CANFA Baculoviral IAP repeat-containing protein 3 OS=Canis familiaris GN=BIRC3 PE=2 SV=1 Back     alignment and function description
>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens GN=BIRC3 PE=1 SV=2 Back     alignment and function description
>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1 Back     alignment and function description
>sp|Q5BKL8|XIAP_XENTR E3 ubiquitin-protein ligase XIAP OS=Xenopus tropicalis GN=xiap PE=2 SV=1 Back     alignment and function description
>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus GN=Birc3 PE=1 SV=2 Back     alignment and function description
>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens GN=BIRC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
18409134468 Transmembrane Fragile-X-F-associated pro 0.995 0.995 0.719 0.0
297838651461 hypothetical protein ARALYDRAFT_476009 [ 0.978 0.993 0.716 0.0
356535553467 PREDICTED: uncharacterized protein LOC10 0.993 0.995 0.689 0.0
225423871466 PREDICTED: uncharacterized protein LOC10 0.993 0.997 0.733 0.0
356576279467 PREDICTED: uncharacterized protein LOC10 0.993 0.995 0.685 0.0
225423873465 PREDICTED: uncharacterized protein LOC10 0.976 0.982 0.728 0.0
449477080467 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.976 0.978 0.680 0.0
449440911474 PREDICTED: uncharacterized protein LOC10 0.993 0.981 0.660 0.0
224118894467 predicted protein [Populus trichocarpa] 0.976 0.978 0.682 0.0
225455850466 PREDICTED: uncharacterized protein LOC10 0.974 0.978 0.699 0.0
>gi|18409134|ref|NP_564945.1| Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] gi|13878073|gb|AAK44114.1|AF370299_1 unknown protein [Arabidopsis thaliana] gi|17104741|gb|AAL34259.1| unknown protein [Arabidopsis thaliana] gi|332196722|gb|AEE34843.1| Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/470 (71%), Positives = 397/470 (84%), Gaps = 4/470 (0%)

Query: 1   MLTQRQVASWGRVFKSLQAVLAHGLLFTFTLLLSLKLDHALRHSWWIVFSPLWLFHVVVA 60
           ML QR+V SW RV+KS QA  AH LLF+FTLLL+LKLDH + HSWW VF+PLWLFH V+A
Sbjct: 1   MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIA 60

Query: 61  RGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALET 120
           RGRFSLPAP MPH+  WAP H+++A PLLVAFE+LLC+ LE  YVV+LKI+FLPLLA E 
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPLLAFEV 120

Query: 121 AILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATL 180
           AILIDN+RMCR LMPGDEE++SDEAIWETLPHFWV+ISM+F +AAT FTLLKLCGDVA L
Sbjct: 121 AILIDNVRMCRTLMPGDEETMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGDVAAL 180

Query: 181 GWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDD 240
           GWWDLFINFGIAECFAFLVCTKW N +IHR S I EPSSS+  VRYLDW+RG+VV  DD+
Sbjct: 181 GWWDLFINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSSSMVVRYLDWNRGLVVTADDE 240

Query: 241 QQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGV 300
            QQ+ R+C LQ IGGH+MKIPF+ FQI+LFM LEGTP+ A+NIP+ V+F PL LLQ  GV
Sbjct: 241 HQQSNRICGLQDIGGHVMKIPFVTFQIILFMRLEGTPASAKNIPILVLFVPLFLLQGAGV 300

Query: 301 LFAVYRLLEKIYLLVHSGP-AFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELA 358
           LFA+YRL+EK  LL++SG  ++G Y++  S AR+ LGF  HG+RLLGWWSIDEGSREE A
Sbjct: 301 LFAMYRLVEKSVLLINSGSGSYGRYFTATSSAREFLGFFQHGARLLGWWSIDEGSREEQA 360

Query: 359 GLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEK 418
            LY  E   +GYNTF PE+VKKMPKS L++EIW+LQAALS Q++IT YSQQEYERLQ EK
Sbjct: 361 RLYSGEA--TGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQTDITSYSQQEYERLQNEK 418

Query: 419 ILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV 468
           ILCR+CFE+ IN++LLPCRHH+LC TC EKCKKCPICRV IEER+P+YDV
Sbjct: 419 ILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIEERMPVYDV 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297838651|ref|XP_002887207.1| hypothetical protein ARALYDRAFT_476009 [Arabidopsis lyrata subsp. lyrata] gi|297333048|gb|EFH63466.1| hypothetical protein ARALYDRAFT_476009 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356535553|ref|XP_003536309.1| PREDICTED: uncharacterized protein LOC100794581 [Glycine max] Back     alignment and taxonomy information
>gi|225423871|ref|XP_002281391.1| PREDICTED: uncharacterized protein LOC100249082 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576279|ref|XP_003556260.1| PREDICTED: uncharacterized protein LOC100786347 [Glycine max] Back     alignment and taxonomy information
>gi|225423873|ref|XP_002281377.1| PREDICTED: uncharacterized protein LOC100249082 isoform 1 [Vitis vinifera] gi|297737871|emb|CBI27072.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449477080|ref|XP_004154923.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215825 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449440911|ref|XP_004138227.1| PREDICTED: uncharacterized protein LOC101215825 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224118894|ref|XP_002317932.1| predicted protein [Populus trichocarpa] gi|222858605|gb|EEE96152.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225455850|ref|XP_002273782.1| PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera] gi|297734166|emb|CBI15413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
TAIR|locus:2012453468 AT1G68820 [Arabidopsis thalian 0.995 0.995 0.695 3.1e-186
TAIR|locus:2031471466 AT1G73950 [Arabidopsis thalian 0.970 0.974 0.647 6.6e-168
TAIR|locus:2014089467 AT1G18470 [Arabidopsis thalian 0.967 0.970 0.653 1.1e-167
UNIPROTKB|E1BR85233 XIAP "Uncharacterized protein" 0.123 0.248 0.406 2.7e-07
TAIR|locus:21201871055 AT4G39050 [Arabidopsis thalian 0.179 0.079 0.351 3.6e-07
TAIR|locus:20500441058 AT2G21380 [Arabidopsis thalian 0.153 0.068 0.383 4.7e-07
UNIPROTKB|Q5BKL8492 xiap "E3 ubiquitin-protein lig 0.153 0.146 0.328 5.6e-07
UNIPROTKB|I3LCB8140 I3LCB8 "Uncharacterized protei 0.117 0.392 0.4 5.9e-07
UNIPROTKB|K7GT21230 XIAP "Uncharacterized protein" 0.209 0.426 0.310 5.9e-07
UNIPROTKB|P98170497 XIAP "E3 ubiquitin-protein lig 0.209 0.197 0.326 7.4e-07
TAIR|locus:2012453 AT1G68820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
 Identities = 327/470 (69%), Positives = 384/470 (81%)

Query:     1 MLTQRQVASWGRVFKSLQAVLAHGXXXXXXXXXXXXXDHALRHSWWIVFSPLWLFHVVVA 60
             ML QR+V SW RV+KS QA  AH              DH + HSWW VF+PLWLFH V+A
Sbjct:     1 MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIA 60

Query:    61 RGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLPLLALET 120
             RGRFSLPAP MPH+  WAP H+++A PLLVAFE+LLC+ LE  YVV+LKI+FLPLLA E 
Sbjct:    61 RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPLLAFEV 120

Query:   121 AILIDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATL 180
             AILIDN+RMCR LMPGDEE++SDEAIWETLPHFWV+ISM+F +AAT FTLLKLCGDVA L
Sbjct:   121 AILIDNVRMCRTLMPGDEETMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGDVAAL 180

Query:   181 GWWDLFINFGIAECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDD 240
             GWWDLFINFGIAECFAFLVCTKW N +IHR S I EPSSS+  VRYLDW+RG+VV  DD+
Sbjct:   181 GWWDLFINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSSSMVVRYLDWNRGLVVTADDE 240

Query:   241 QQQNCRMCNLQTIGGHIMKIPFICFQIMLFMYLEGTPSRARNIPLRVIFAPLLLLQATGV 300
              QQ+ R+C LQ IGGH+MKIPF+ FQI+LFM LEGTP+ A+NIP+ V+F PL LLQ  GV
Sbjct:   241 HQQSNRICGLQDIGGHVMKIPFVTFQIILFMRLEGTPASAKNIPILVLFVPLFLLQGAGV 300

Query:   301 LFAVYRLLEKIYLLVHSGP-AFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELA 358
             LFA+YRL+EK  LL++SG  ++G Y++  S AR+ LGF  HG+RLLGWWSIDEGSREE A
Sbjct:   301 LFAMYRLVEKSVLLINSGSGSYGRYFTATSSAREFLGFFQHGARLLGWWSIDEGSREEQA 360

Query:   359 GLYCAETKISGYNTFPPEIVKKMPKSGLIDEIWKLQAALSAQSEITMYSQQEYERLQTEK 418
              LY  E   +GYNTF PE+VKKMPKS L++EIW+LQAALS Q++IT YSQQEYERLQ EK
Sbjct:   361 RLYSGEA--TGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQTDITSYSQQEYERLQNEK 418

Query:   419 ILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIEERLPIYDV 468
             ILCR+CFE+ IN++LLPCRHH+LC TC EKCKKCPICRV IEER+P+YDV
Sbjct:   419 ILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIEERMPVYDV 468
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2031471 AT1G73950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014089 AT1G18470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR85 XIAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2120187 AT4G39050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050044 AT2G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BKL8 xiap "E3 ubiquitin-protein ligase XIAP" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|I3LCB8 I3LCB8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GT21 XIAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P98170 XIAP "E3 ubiquitin-protein ligase XIAP" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G68820
membrane protein, putative; membrane protein, putative; FUNCTIONS IN- protein binding, zinc ion binding; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, RING-type (InterPro-IPR001841); BEST Arabidopsis thaliana protein match is- zinc finger (C3HC4-type RING finger) family protein (TAIR-AT1G73950.1); Has 2228 Blast hits to 2189 proteins in 182 species- Archae - 0; Bacteria - 0; Metazoa - 1400; Fungi - 2; Plants - 302; Viruses - 198; Other Eukaryotes - 326 (source- NCBI BLink). (468 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G61530
small G protein family protein / RhoGAP family protein; small G protein family protein / RhoGAP [...] (376 aa)
   •    0.534
BZIP25
BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor; bZIP transc [...] (403 aa)
   •    0.534
PUB14
PUB14; ubiquitin-protein ligase; Encodes a protein with ubiquitin ligase activity. ; Functions [...] (632 aa)
   •    0.530
ALDH7B4
ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase; Ald [...] (508 aa)
   •    0.528
AML2
AML2 (ARABIDOPSIS-MEI2-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding; A memb [...] (843 aa)
   •    0.522
HGO
HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygena [...] (461 aa)
   •    0.517
AT4G21580
oxidoreductase, zinc-binding dehydrogenase family protein; oxidoreductase, zinc-binding dehydro [...] (325 aa)
   •    0.516
ATBCAT-2
ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino- [...] (388 aa)
   •    0.508
WNK4
WNK4 (WITH NO K (=LYSINE) 4); kinase/ protein kinase; Encodes a member of the WNK family (9 mem [...] (571 aa)
   •    0.502
CSY3
CSY3 (citrate synthase 3); citrate (SI)-synthase; Encodes a peroxisomal citrate synthase that i [...] (509 aa)
   •    0.499

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
pfam10269226 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p 4e-59
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 2e-13
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 2e-06
cd0016245 cd00162, RING, RING-finger (Really Interesting New 2e-04
COG5236 493 COG5236, COG5236, Uncharacterized conserved protei 0.003
>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein Back     alignment and domain information 
 Score =  193 bits (492), Expect = 4e-59
 Identities = 80/264 (30%), Positives = 116/264 (43%), Gaps = 41/264 (15%)

Query: 35  LKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFEL 94
           L+LD  +  SWW VF+PLW++ +VV  G F L A V   N   A    +V   LL+AFEL
Sbjct: 1   LRLDGYISWSWWAVFAPLWIWKLVVLLGAFLLIASV-SRNEFKAMLIGLVCHLLLLAFEL 59

Query: 95  LLCIRLEGAYVVNLKIIFLPLLAL---ETAILIDNIRMCRALMPGDEESISDEAIWETLP 151
           L+CI+L  +  +   I+F+PL AL      IL+   R             SD +    L 
Sbjct: 60  LVCIKLGLSGALLWSIVFIPLYALSVLSILILLWGFRFTM----------SDRSYELELF 109

Query: 152 HFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGIAECFAFLVCTKWYNPAIHRQ 211
           +    +  +F +A   F  LKL   V    WW +FI   I    AFLV            
Sbjct: 110 YAVNILQFVFAIAFFTFLALKL-DGVVDWSWWVVFIPLWIVLGLAFLVV----------- 157

Query: 212 SCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGGHIMKIPFICFQIMLFM 271
                      ++R L      ++V  D++     +  L       + IP + FQ++L M
Sbjct: 158 -----LYLVIMSIRLLRE--NNLLVSQDERALASAIGYL----SIFIVIPMLVFQVLLEM 206

Query: 272 YLEGTPSRARNIPLRVIFAPLLLL 295
            L+G      NIP+ V+F PL +L
Sbjct: 207 RLDGDN----NIPIIVLFIPLFVL 226

This is a family of conserved transmembrane proteins that appear in humans to be expressed from a region upstream of the FragileXF site and to be intimately linked with the Fragile-X syndrome. Absence of TMEM185A does not necessarily lead to developmental delay, but might in combination with other, yet unknown, factors. Otherwise, the lack of the TMEM185A protein is either disposable (redundant) or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B. Length = 226
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 468
PF10269238 Tmemb_185A: Transmembrane Fragile-X-F protein ; In 100.0
KOG3879267 consensus Predicted membrane protein [Function unk 100.0
KOG1101147 consensus Apoptosis inhibitor IAP1 and related BIR 99.61
KOG3879267 consensus Predicted membrane protein [Function unk 99.59
PF10269238 Tmemb_185A: Transmembrane Fragile-X-F protein ; In 99.49
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 99.27
smart0023871 BIR Baculoviral inhibition of apoptosis protein re 99.17
PF0065370 BIR: Inhibitor of Apoptosis domain; InterPro: IPR0 99.17
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 99.13
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 99.12
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 99.09
cd0002269 BIR Baculoviral inhibition of apoptosis protein re 99.09
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 98.83
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 98.59
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 98.16
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.95
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.89
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 97.89
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.84
PF1463444 zf-RING_5: zinc-RING finger domain 97.84
PHA02929238 N1R/p28-like protein; Provisional 97.78
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.74
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.59
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.43
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.36
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.33
PHA02926242 zinc finger-like protein; Provisional 97.32
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.31
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 97.28
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.21
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.12
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.05
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.02
COG5236 493 Uncharacterized conserved protein, contains RING Z 96.97
smart0050463 Ubox Modified RING finger domain. Modified RING fi 96.94
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 96.6
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 96.56
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.55
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 96.48
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 96.36
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 96.07
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 95.91
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 95.89
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 95.16
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 95.13
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 94.9
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 93.39
KOG3002 299 consensus Zn finger protein [General function pred 93.16
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 93.03
COG5152259 Uncharacterized conserved protein, contains RING a 92.92
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 92.64
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 92.3
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 92.09
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 92.08
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 91.04
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 90.95
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 90.1
KOG3039303 consensus Uncharacterized conserved protein [Funct 89.85
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 88.59
KOG0297 391 consensus TNF receptor-associated factor [Signal t 85.2
PF04641260 Rtf2: Rtf2 RING-finger 84.77
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 84.03
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome Back     alignment and domain information 
Probab=100.00  E-value=2.1e-42  Score=336.97  Aligned_cols=233  Identities=45%  Similarity=0.756  Sum_probs=184.4

Q ss_pred             HhcCCCcccchhhHHHHHHHHHHHHhheeccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHhcCcccccEehhhhh
Q 012197           35 LKLDHALRHSWWIVFSPLWLFHVVVARGRFSLPAPVMPHNHQWAPSHAIVAAPLLVAFELLLCIRLEGAYVVNLKIIFLP  114 (468)
Q Consensus        35 LklD~~i~wsW~~VF~PLwi~~~i~~~g~~~~~~~~~~~~~~w~~~~~~~~~lll~~F~~llc~kLe~~~~~~~~~Vf~P  114 (468)
                      ||+||+++||||.||+|+|++|++++.|.+.+......+.+.++.+++...++++++||+++|.||++....+|++||+|
T Consensus         1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~~~w~~VFiP   80 (238)
T PF10269_consen    1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSSISWSIVFIP   80 (238)
T ss_pred             CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCcceeeeeeec
Confidence            79999999999999999999999999988765544445566665555567789999999999999977777999999999


Q ss_pred             HHHHHHHHH---HHHhhhhhccCCCCCCcchhhHHHhhcchhHHHHHHHHHHHHHhhhhhhccCceeeecceehhhHHHH
Q 012197          115 LLALETAIL---IDNIRMCRALMPGDEESISDEAIWETLPHFWVAISMIFLLAATIFTLLKLCGDVATLGWWDLFINFGI  191 (468)
Q Consensus       115 l~~l~~~~~---v~~~~~c~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~i~l~LKLDg~~~~~~W~~vFiPlwi  191 (468)
                      +|++.+...   ++.+|+    ++++++++++++.+.+++++...++++|++++++|++||||| .++||||+||+|+|+
T Consensus        81 L~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~-~i~~sW~~vFiPl~i  155 (238)
T PF10269_consen   81 LFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDG-VIDWSWWIVFIPLWI  155 (238)
T ss_pred             hhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-cccccHHHHHHHHHH
Confidence            988886544   444444    777888889999988899999999999999999999999999 599999999999999


Q ss_pred             HHHHHhhhhcccCCccccccccccCCCCCcceeeeeeeccceeecCCcchhhhhchhhHHHHHH--HHHHHHHHHHHHHH
Q 012197          192 AECFAFLVCTKWYNPAIHRQSCIREPSSSTTAVRYLDWSRGIVVVGDDDQQQNCRMCNLQTIGG--HIMKIPFICFQIML  269 (468)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~ll~f~iLL  269 (468)
                      ++++++++|.....                ..+++.+      ++++...+|+ +.+....+.+  +++++|+++||+||
T Consensus       156 ~~~~~~~~~~~~~i----------------~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~F~vLL  212 (238)
T PF10269_consen  156 ADGLAFLVCLYSII----------------MSIRYLD------RNPGLLPSQR-RSSLQSRICWGGLFLVIPLLVFQVLL  212 (238)
T ss_pred             HHHHHHHHHHHHHH----------------HHHHHHh------ccCCCchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999986311100                0111111      2223333333 2233334444  89999999999999


Q ss_pred             HHhhcCCCCcCCCCChhhhHHHHHHH
Q 012197          270 FMYLEGTPSRARNIPLRVIFAPLLLL  295 (468)
Q Consensus       270 ~~~L~~~~~~~~~~~~~~vf~Pl~il  295 (468)
                      |+||||++.+|.++|+..||+|++++
T Consensus       213 ~~kLe~~~~~~~~~~~~~vf~PL~i~  238 (238)
T PF10269_consen  213 CMKLEGTPWSAANIPISVVFIPLFIL  238 (238)
T ss_pred             HHHhcCCccccccccHHHHHHHHHhC
Confidence            99999997777899999999999974

The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
>KOG3879 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG3879 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat Back     alignment and domain information
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
4ic2_A74 Crystal Structure Of The Xiap Ring Domain Length = 7e-09
4ic3_A74 Crystal Structure Of The F495l Mutant Xiap Ring Dom 1e-08
2ecg_A75 Solution Structure Of The Ring Domain Of The Baculo 2e-08
3eb5_A74 Structure Of The Ciap2 Ring Domain Length = 74 3e-08
3t6p_A345 Iap Antagonist-Induced Conformational Change In Cia 3e-07
2yhn_A79 The Idol-Ube2d Complex Mediates Sterol-Dependent De 3e-07
2ea5_A68 Solution Structure Of The Ring Domain Of The Human 5e-06
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74 Back     alignment and structure 
Iteration: 1

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 395 AALSAQSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPI 454
            + S Q EI+  ++++  RLQ EK LC+IC +  I I+ +PC H + C+ C E   KCP+
Sbjct: 4   GSTSLQKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPM 60
Query: 455 CRVFIEERLPIY 466
           C   I  +  I+
Sbjct: 61  CYTVITFKQKIF 72
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74 Back     alignment and structure
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75 Back     alignment and structure
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74 Back     alignment and structure
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345 Back     alignment and structure
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79 Back     alignment and structure
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell Growth Regulator With Ring Finger Domain 1 Protein Length = 68 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 3e-21
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 6e-21
2ea5_A68 Cell growth regulator with ring finger domain prot 5e-20
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 1e-15
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 2e-12
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 4e-11
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 2e-06
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 1e-05
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 2e-05
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 3e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 1e-04
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 2e-04
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 2e-04
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 4e-04
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 4e-04
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 6e-04
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 8e-04
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
 Score = 86.7 bits (215), Expect = 3e-21
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 401 SEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKCKKCPICRVFIE 460
           ++ T   Q++  +L+ E +LC +C EE+IN    PC H + C +C  + + CP+CR  +E
Sbjct: 2   AQQTRVLQEKLRKLK-EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVE 60

Query: 461 ERLPIY 466
               +Y
Sbjct: 61  HVQHVY 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
3t6p_A 345 Baculoviral IAP repeat-containing protein 2; ring, 99.91
3hl5_A95 Baculoviral IAP repeat-containing protein 4; BIR, 99.59
3mup_A122 Baculoviral IAP repeat-containing protein 2; zinc- 99.58
1jd5_A124 DIAP1, apoptosis 1 inhibitor; IAP, caspase activat 99.58
2vm5_A106 Baculoviral IAP repeat-containing protein 1; apopt 99.57
2i3h_A133 Baculoviral IAP repeat-containing protein 7; zinc 99.56
3d9t_A97 Baculoviral IAP repeat-containing protein 2; zinc 99.56
1g73_C121 Inhibitors of apoptosis-like protein ILP; helix bu 99.52
2poi_A94 Baculoviral IAP repeat-containing protein 4; zinc 99.48
1se0_A116 Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas 99.47
2qfa_A142 Baculoviral IAP repeat-containing protein 5; three 99.46
2qra_D111 XIAP, baculoviral IAP repeat-containing protein 4, 99.45
3m1d_A85 Baculoviral IAP repeat-containing protein 2; BIR, 99.45
3siq_A136 Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 99.42
1i4o_C141 X-linked IAP, baculoviral IAP repeat-containing pr 99.42
2ea5_A68 Cell growth regulator with ring finger domain prot 99.41
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 99.37
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 99.34
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 99.31
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 99.27
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 99.23
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.54
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.47
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.45
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.43
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.42
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.38
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.36
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.34
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.31
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.31
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.3
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.28
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.26
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.24
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.24
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.2
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.2
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.19
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.19
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.17
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.17
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.16
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.15
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.12
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 98.07
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.07
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.06
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.05
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.03
2ect_A78 Ring finger protein 126; metal binding protein, st 98.03
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.03
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.02
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.0
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 97.97
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 97.95
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 97.94
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 97.87
2ysj_A63 Tripartite motif-containing protein 31; ring-type 97.83
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 97.82
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 97.82
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 97.81
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 97.75
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.7
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.57
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.57
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.54
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 97.47
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.34
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 97.28
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 97.27
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 97.22
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 97.12
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 97.0
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 96.97
2f42_A179 STIP1 homology and U-box containing protein 1; cha 96.58
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 96.53
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 96.5
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 96.33
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 96.14
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 95.32
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 93.46
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 90.59
2ko5_A99 Ring finger protein Z; lassa fever virus-Z, negati 87.11
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 83.68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
Probab=99.91  E-value=1.3e-25  Score=228.32  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             hheeeecceeeeccCCCCccc-ceeccCCccceeceeccCCcccccCCCCCCcHHHHhhhcccccc
Q 012197          302 FAVYRLLEKIYLLVHSGPAFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETK  366 (468)
Q Consensus       302 f~~~~~~e~~~~~~~~~a~aG-~~~~~~d~~~Cf~~~~c~~~L~~~W~~~d~p~~eha~~~p~C~~  366 (468)
                      |.-|+.-  ..+.+++||+|| ||+|.+|.|+||   +||++|.+ |+++||||+||+|++|.|.+
T Consensus        13 F~~WP~~--~~~~~~~lA~AGFyy~g~~D~v~Cf---~C~~~l~~-We~~DdP~~eH~~~~p~C~f   72 (345)
T 3t6p_A           13 FMYWPSS--VPVQPEQLASAGFYYVGRNDDVKCF---SCDGGLRC-WESGDDPWVEHAKWFPRCEF   72 (345)
T ss_dssp             GGGSCTT--CSSCHHHHHHTTEEECSSTTCEEET---TTCCEECC-CCTTCCHHHHHHHHCTTCHH
T ss_pred             HhhCCCc--ccCCHHHHHhCCCeecCCCCeEEec---CCCCCccC-CCCCCCHHHHHHHhCCCCcc
Confidence            4456643  246778999999 999999999999   99999999 99999999999999999994
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Back     alignment and structure
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A* Back     alignment and structure
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Back     alignment and structure
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Back     alignment and structure
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Back     alignment and structure
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Back     alignment and structure
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Back     alignment and structure
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Back     alignment and structure
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Back     alignment and structure
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Back     alignment and structure
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Back     alignment and structure
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Back     alignment and structure
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 468
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 2e-09
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 3e-06
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 1e-04
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 2e-04
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 5e-04
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 0.001
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 0.001
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 400 QSEITMYSQQEYERLQTEKILCRICFEEQINILLLPCRHHILCRTCGEKC-----KKCPI 454
             ++T    + Y  + +   LC+IC E   ++ + PC  H++C +C         + CP 
Sbjct: 5   HIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCG-HLMCTSCLTSWQESEGQGCPF 63

Query: 455 CRVFIEERLPIY 466
           CR  I+   PI 
Sbjct: 64  CRCEIKGTEPIV 75
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
d3d9ta187 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} 99.55
d2i3ha190 BIR-containing protein 7 (ML-IAP, livin) {Human (H 99.55
d2vsla196 BIR domains of XIAP {Human (Homo sapiens) [TaxId: 99.53
d1jd5a_105 BIR domains of DIAP1 {Fruit fly (Drosophila melano 99.53
d2qfaa1137 Anti-apoptotic protein survivin {Human (Homo sapie 99.47
d1se0a_97 BIR domains of DIAP1 {Fruit fly (Drosophila melano 99.38
d1i3oe_111 BIR domains of XIAP {Human (Homo sapiens) [TaxId: 99.37
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.85
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.48
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.36
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.32
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.31
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.12
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.09
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.04
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.96
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.73
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.65
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.53
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.5
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 97.25
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.08
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.79
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 95.27
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.2e-16  Score=129.11  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=59.6

Q ss_pred             eeccCCCCccc-ceeccCCccceeceeccCCcccccCCCCCCcHHHHhhhccccccccccCCCChhhhccCCCCchhhHH
Q 012197          312 YLLVHSGPAFG-YWSIASKARDCLGFMHHGSRLLGWWSIDEGSREELAGLYCAETKISGYNTFPPEIVKKMPKSGLIDEI  390 (468)
Q Consensus       312 ~~~~~~~a~aG-~~~~~~d~~~Cf~~~~c~~~L~~~W~~~d~p~~eha~~~p~C~~~sg~~t~~~e~Vk~~K~~e~~~~~  390 (468)
                      ...+++||+|| ||+|.+|.++||   +||.+|.+ |+++||||+||++++|.|.           +++.+|++++++++
T Consensus        19 ~~~~~~LA~aGFyytg~~D~v~C~---~C~~~l~~-W~~~Ddp~~eH~~~~p~C~-----------fv~~~k~~~fv~~v   83 (87)
T d3d9ta1          19 PVQPEQLASAGFYYVGRNDDVKCF---CCDGGLRC-WESGDDPWVEHAKWFPRCE-----------FLIRMKGQEFVDEI   83 (87)
T ss_dssp             SSCHHHHHHTTEEECSSTTCEEET---TTCCEEEC-CCTTCCHHHHHHHHCTTBH-----------HHHHHHCHHHHHHH
T ss_pred             CcCHHHHHHcCCEECCCCCEEEeC---cCCCEecC-cCCCCcchHHHHHHCcCCc-----------hhHhhCCHHHHHHH
Confidence            35678999999 999999999999   99999999 9999999999999999999           89988988887655


Q ss_pred             H
Q 012197          391 W  391 (468)
Q Consensus       391 ~  391 (468)
                      +
T Consensus        84 ~   84 (87)
T d3d9ta1          84 Q   84 (87)
T ss_dssp             T
T ss_pred             H
Confidence            3
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure