Citrus Sinensis ID: 012308

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYDLSNHFRSSRNQKRLARLLSW
cccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEEccccEEEEccccEEEEccccccccccccccccccccccccccccccEEEEcEEcEEEEcccEEEcccccccccccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEEEEcEEEEEEEEEccccccccccccccccccEEEEEcEEEccccEEEEcccccccccccccccccEEEEEEEEccccccEEEEcccccccEEEEEEEcEEEEccccEEEEEEcccccEEEEEEEEEEEEEEEEcEEEEEEcccccccccccccccccEEEcEEEEEEEEEcccEEEEEEccccccEEEEEEEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEccc
ccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEccccEEEccEEEcccEEEEEEEcEEEEEcccccccccccccccccccccccccccEEEEEEccccEEEEEccccEEccccHHHHHHHHccccccccccEEEEEEcccEEEEEEEEEccccEEEEEEEccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEccHHccEEcccccccEEEEEEEEEcccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEccccccEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEcEEEEEEEEEcccccccccEEEEEEEEEcccccccEEEcEEEEcccccccccHHcccccccccccHccccccccccccccccHHHHHcc
MRRSFTLVDVFLVLALFseapwavagssqcsqsnlevfrphsvsitefgavgdgvtLNTKAFQNAIFYLNSFadkggaklfvpagqwltgSFDLISHLTLWLdkdavilgstnsdtwpvidplpsygrgrelpggrhrslifgrnltdvvitgdngtidgqgsIWWEWFrngtldytrphLVELMNSTGviisnltflnppfwtihpvycshvkvqnvtirapldspntdgidpdssddvcikdcyistgddlvsiksgwdeygisygrpstkitihgligetklgAGIAIgsemsggvsevhaENLYffnsvrgiriktspgrggyvrniSISNVTLNHVDVAIIFtghfgehpddsydpsalpiieritiknvigenvkmagqlegiegdtFRYICLSniklngvsespwncsyiqgysdlvfpetcdplkesifpmhhldcydlsnhfrssrNQKRLARLLSW
MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVIlgstnsdtwpvidplpsygrgrelpgGRHRSLIFGRNLTDVVITgdngtidgqgsIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYistgddlvsiKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRiktspgrggyvRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYDLsnhfrssrnqkrlarllsw
MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYDLSNHFRSSRNQKRLARLLSW
****FTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAP***************DVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYDLSNH****************
*RRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKE*IFPMHHLDCYDLSNHF******KR*ARLLSW
MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYDLSNHFRSSRNQKRLARLLSW
*RRSFTLVDVFLVLALFSEAPW*******C*****EVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYD*S*HFR**************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGYSDLVFPETCDPLKESIFPMHHLDCYDLSNHFRSSRNQKRLARLLSW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query466 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.851 0.808 0.532 1e-126
Q9LW07456 Probable polygalacturonas no no 0.787 0.804 0.301 2e-31
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.768 0.696 0.299 1e-27
P43212514 Polygalacturonase OS=Cryp N/A no 0.723 0.655 0.288 5e-24
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.706 0.648 0.294 9e-24
Q8RY29433 Polygalacturonase ADPG2 O no no 0.703 0.757 0.289 1e-21
O23147431 Polygalacturonase ADPG1 O no no 0.746 0.807 0.264 2e-21
P35336467 Polygalacturonase OS=Acti N/A no 0.641 0.640 0.286 7e-20
P27644312 Polygalacturonase OS=Rhiz yes no 0.392 0.586 0.338 3e-19
P49062422 Exopolygalacturonase clon no no 0.706 0.779 0.272 3e-19
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/400 (53%), Positives = 284/400 (71%), Gaps = 3/400 (0%)

Query: 39  RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHL 98
           R HS S+ +FG VGDG TLNTKAFQ+A+  L+ +  +GGA+L+VPAG+WLTGSF L SH 
Sbjct: 59  RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118

Query: 99  TLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTI 158
           TL+L +DAV+L S +   WPVI PLPSYGRGR+   GR+ SLIFG NLTDV+ITGDNGTI
Sbjct: 119 TLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTI 178

Query: 159 DGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNV 218
           DGQG +WW+ F  G L YTRP+L+ELM S  + ISNLT LN P W +HPVY  ++ +Q +
Sbjct: 179 DGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGI 238

Query: 219 TIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHG 278
           TI AP+ SPNTDGI+PDS  +  I+DCYI +GDD V++KSGWDEYGI+YG P+ ++ I  
Sbjct: 239 TILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRR 298

Query: 279 LIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTL 338
           L   +   A IA+GSEMSGG+ +V AE++   NS  GIRIKT  GRGGYV++I +  +T+
Sbjct: 299 LTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTM 358

Query: 339 NHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYIC 398
             +  A   TG++G H D+ YDP A P+I+ I  ++++ ENV MA +LEGI  D F  IC
Sbjct: 359 KTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGIC 418

Query: 399 LSNIKLNGVSES---PWNCSYIQGYSDLVFPETCDPLKES 435
           +SN+ ++  +++   PW C+ ++G S  V P  C  L + 
Sbjct: 419 ISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQ 458

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
357511567466 Polygalacturonase [Medicago truncatula] 0.984 0.984 0.769 0.0
359480238466 PREDICTED: probable polygalacturonase-li 1.0 1.0 0.778 0.0
356572848467 PREDICTED: probable polygalacturonase-li 0.980 0.978 0.767 0.0
255589944476 Polygalacturonase precursor, putative [R 0.965 0.945 0.771 0.0
224064770458 predicted protein [Populus trichocarpa] 0.952 0.969 0.795 0.0
356501839472 PREDICTED: probable polygalacturonase-li 0.987 0.974 0.776 0.0
224130826427 predicted protein [Populus trichocarpa] 0.916 1.0 0.803 0.0
356533489472 PREDICTED: probable polygalacturonase-li 0.995 0.983 0.752 0.0
359807069467 uncharacterized protein LOC100817309 pre 0.980 0.978 0.765 0.0
18412253471 glycoside hydrolase family 28 protein / 0.995 0.985 0.697 0.0
>gi|357511567|ref|XP_003626072.1| Polygalacturonase [Medicago truncatula] gi|355501087|gb|AES82290.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/459 (76%), Positives = 400/459 (87%)

Query: 1   MRRSFTLVDVFLVLALFSEAPWAVAGSSQCSQSNLEVFRPHSVSITEFGAVGDGVTLNTK 60
           MRR  TLVDVFLVLALF  + W V  S+ C ++NL+  RPHSVSITEFGAVGDG+TLNTK
Sbjct: 1   MRRPSTLVDVFLVLALFCCSSWKVWSSTLCKETNLDKVRPHSVSITEFGAVGDGITLNTK 60

Query: 61  AFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVI 120
           AFQNAIFYLNSF+DKGGAKLFVPAG+WLTGSFDLISHLTLWLDKDA+ILGSTNS+ WPV+
Sbjct: 61  AFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPVV 120

Query: 121 DPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPH 180
           DPLPSYGRGRELPGGRHRSLI+G NLTDV+ITG+ G IDGQGSIWW  FRN TLDYTRPH
Sbjct: 121 DPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSMFRNKTLDYTRPH 180

Query: 181 LVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDV 240
           LVELMNST V+ISNLTFLN PFWTIHPVYCS V VQNVTI APLDSPNTDGIDPDSSDDV
Sbjct: 181 LVELMNSTRVLISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDV 240

Query: 241 CIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVS 300
           CI+DCYISTGDDL++IKSGWDEYGI++GRPST I IH L+G+T   AGIAIGSEMSGGVS
Sbjct: 241 CIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIVIHRLVGKTHTSAGIAIGSEMSGGVS 300

Query: 301 EVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYD 360
           +V AE+++F++S   IRIKTSPGRGGYVRNI ++N+TL +VD+AI FTG +G+HPDD+YD
Sbjct: 301 DVRAEDIHFYDSYTAIRIKTSPGRGGYVRNIYVTNMTLANVDIAIRFTGSYGDHPDDAYD 360

Query: 361 PSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQGY 420
           P+ALP+IE+ITI++VIGEN+  AG +EGIEGD F  ICLSNI LN  S  PWNCS I+GY
Sbjct: 361 PNALPVIEKITIEDVIGENITKAGLIEGIEGDNFVNICLSNITLNVSSNYPWNCSNIRGY 420

Query: 421 SDLVFPETCDPLKESIFPMHHLDCYDLSNHFRSSRNQKR 459
           SD+VFPE C+PLKE IFP H  DCY LSNH +SS NQ R
Sbjct: 421 SDMVFPEACEPLKERIFPDHCSDCYYLSNHRQSSNNQNR 459

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480238|ref|XP_002273855.2| PREDICTED: probable polygalacturonase-like [Vitis vinifera] gi|297744085|emb|CBI37055.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572848|ref|XP_003554577.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|255589944|ref|XP_002535132.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223523955|gb|EEF27252.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224064770|ref|XP_002301554.1| predicted protein [Populus trichocarpa] gi|222843280|gb|EEE80827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501839|ref|XP_003519731.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|224130826|ref|XP_002320934.1| predicted protein [Populus trichocarpa] gi|222861707|gb|EEE99249.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356533489|ref|XP_003535296.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|359807069|ref|NP_001241086.1| uncharacterized protein LOC100817309 precursor [Glycine max] gi|255636991|gb|ACU18828.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18412253|ref|NP_567126.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|11762132|gb|AAG40344.1|AF324992_1 AT3g62110 [Arabidopsis thaliana] gi|23397166|gb|AAN31866.1| unknown protein [Arabidopsis thaliana] gi|332646790|gb|AEE80311.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.995 0.985 0.697 5.7e-178
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.879 0.901 0.562 3.4e-125
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.836 0.821 0.554 1.2e-120
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.907 0.952 0.532 1.6e-118
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.847 0.797 0.542 1.4e-117
TAIR|locus:2083383446 AT3G06770 [Arabidopsis thalian 0.914 0.955 0.519 3e-117
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.849 0.831 0.526 2.2e-114
TAIR|locus:504954979449 AT5G49215 [Arabidopsis thalian 0.914 0.948 0.510 3.5e-114
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.924 0.959 0.522 3.2e-113
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.950 0.944 0.46 1e-107
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 330/473 (69%), Positives = 379/473 (80%)

Query:     1 MRRSFTLVDVFLVLALFSEAPWAVAGSS-QCSQSNL-EVFRPHSVSITEFGAVGDGVTLN 58
             M+RSF L+ V LV A +    W   G S  C  SNL  + RPHSVSITEFGAVGDGVTLN
Sbjct:     1 MKRSFLLLYVLLVQAFYGA--WCSVGESLHCEYSNLASLHRPHSVSITEFGAVGDGVTLN 58

Query:    59 TKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWP 118
             TKAFQNA+FYLNSF+DKGGAKLFVPAGQWLTGSFDLISHLTLWLDK A ILGST+S+ WP
Sbjct:    59 TKAFQNALFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTSSENWP 118

Query:   119 VIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTR 178
             V+DPLPSYGRGRELPG RHRSLI+G+NLTDVVITG+NGTIDGQG++WW+WFRNG L+YTR
Sbjct:   119 VVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGTVWWDWFRNGELNYTR 178

Query:   179 PHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSD 238
             PHLVELMNSTG+IISNLTFLN PFW IHPVYC  V V+N+TI APL+SPNTDG+DPDSS 
Sbjct:   179 PHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDPDSST 238

Query:   239 DVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGG 298
             +VCI+DCYI TGDDLVSIKSGWDEYGISY RPS+KI I+ L G+T   +GIAIGSEMSGG
Sbjct:   239 NVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINRLTGQTTSSSGIAIGSEMSGG 298

Query:   299 VSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDS 358
             VSE++ ++L+ FNS  GIRIKTS GRGGYVRN+ I NV L++V  AI FTG +GEHPD+ 
Sbjct:   299 VSEIYIKDLHLFNSNTGIRIKTSAGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEHPDEK 358

Query:   359 YDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLN---GVSESPWNCS 415
             YDP ALP IE+IT +NV G+ + +AG LEGIEGD F+ IC  N+ L       +SPW CS
Sbjct:   359 YDPKALPAIEKITFENVNGDGIGVAGLLEGIEGDVFKNICFLNVTLRVKKNSKKSPWECS 418

Query:   416 YIQGYSDLVFPE-TCDPLKESIFPMHHLDCYDLS-NHFRSSRNQKRLARLLSW 466
              ++GYS  V PE TCD LKESIFP H  DC+ LS N+   S    R   LLSW
Sbjct:   419 NVRGYSQWVSPEITCDSLKESIFPEHGSDCFGLSENNMEISSGLSRSPWLLSW 471
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083383 AT3G06770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-63
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-34
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-31
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 9e-28
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-26
PLN03010409 PLN03010, PLN03010, polygalacturonase 3e-25
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 9e-24
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-12
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-10
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  213 bits (545), Expect = 2e-63
 Identities = 114/319 (35%), Positives = 154/319 (48%), Gaps = 29/319 (9%)

Query: 43  VSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWL 102
            S+++ GAVGDG T NT A Q AI    S    GG  + +PAG +L+G   L S++TL L
Sbjct: 83  FSVSDDGAVGDGATDNTAAIQAAIDACAS---AGGGTVLLPAGTYLSGPLFLKSNVTLHL 139

Query: 103 DKDAVILGSTNSDTWP---------------VIDPLPSYGRGRELPGGRHRSLIFGRNLT 147
            + A +L S+N   +P                 D   +   G  L  G+   LI G +  
Sbjct: 140 AEGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSN 199

Query: 148 DVVITGDNGTIDGQG--SIWWEWFRNGTLDY------TRPHLVELMNSTGVIISNLTFLN 199
              I G  GTIDG G       +   G ++        RP  V L     V++  L   N
Sbjct: 200 RKEIWG-KGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKN 258

Query: 200 PPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 259
            P WT+HPV C ++  +N+TI A     NTDG DP S  +V I+ C   TGDD ++IKSG
Sbjct: 259 SPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSG 317

Query: 260 WDEYGISYGRPSTKITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIK 319
               G     PS  I I      +  G G+ +GSEM GGV  +  E+    N+ RG+RIK
Sbjct: 318 AGLDGKKGYGPSRNIVIRNCYFSSGHG-GLVLGSEMGGGVQNITVEDCVMDNTDRGLRIK 376

Query: 320 TSPGRGGYVRNISISNVTL 338
           T+ GRGG VRNI   +  +
Sbjct: 377 TNDGRGGGVRNIVFEDNKM 395

Length = 542
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 466
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.96
PLN02793443 Probable polygalacturonase 99.88
PLN03003456 Probable polygalacturonase At3g15720 99.88
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
PLN02218431 polygalacturonase ADPG 99.88
PLN03010409 polygalacturonase 99.87
PLN02155394 polygalacturonase 99.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.85
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.81
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.69
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.47
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.25
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.86
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.73
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.69
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.62
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.61
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.58
PLN02480343 Probable pectinesterase 98.56
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.52
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.46
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.43
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.4
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.35
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.32
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.19
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.19
PLN02682369 pectinesterase family protein 98.18
smart00656190 Amb_all Amb_all domain. 98.16
PLN02176340 putative pectinesterase 98.09
smart00656190 Amb_all Amb_all domain. 97.95
PLN02773317 pectinesterase 97.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.82
PRK10531422 acyl-CoA thioesterase; Provisional 97.8
PLN02497331 probable pectinesterase 97.79
PLN02634359 probable pectinesterase 97.71
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.69
PLN02665366 pectinesterase family protein 97.69
PLN02432293 putative pectinesterase 97.55
PLN02671359 pectinesterase 97.52
PLN02304379 probable pectinesterase 97.52
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.47
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.26
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.21
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.21
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.2
PLN02916502 pectinesterase family protein 97.19
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.15
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.12
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.1
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.1
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.09
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.06
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.05
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.04
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.03
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.99
PLN02314586 pectinesterase 96.99
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.97
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.89
PLN02301548 pectinesterase/pectinesterase inhibitor 96.85
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.71
PLN02197588 pectinesterase 96.69
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.67
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.59
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.58
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 96.39
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.45
PLN02682369 pectinesterase family protein 94.1
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 94.08
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.71
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.77
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.4
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 91.15
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 90.33
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 89.42
PLN02773317 pectinesterase 89.15
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 87.16
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 86.53
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 84.02
KOG1777 625 consensus Putative Zn-finger protein [General func 83.59
PLN02634359 probable pectinesterase 83.29
PLN02480343 Probable pectinesterase 83.08
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-72  Score=576.45  Aligned_cols=360  Identities=26%  Similarity=0.445  Sum_probs=317.0

Q ss_pred             CCeeEEEeecCccCCCcchhHHHHHHHHHH-hhccccCCCcEEEecCC-cceEeeEEe----ecCceEEecCCcEEecCC
Q 012308           39 RPHSVSITEFGAVGDGVTLNTKAFQNAIFY-LNSFADKGGAKLFVPAG-QWLTGSFDL----ISHLTLWLDKDAVILGST  112 (466)
Q Consensus        39 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~-a~~~~~~gg~tV~iP~G-~Y~~~~l~l----~s~~tL~l~~ga~i~~~~  112 (466)
                      .++++||+||||+|||++|||+|||+||++ |+   ..+|++|+||+| +|++++|.|    +|+++|+++  ++|+++.
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~---~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~  123 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS---SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPK  123 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc---cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccC
Confidence            457999999999999999999999999994 53   568899999999 599999999    899999997  8999999


Q ss_pred             CCCCCCCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCcchhhhhhcC---CCCCCCCCeeEEEEeecc
Q 012308          113 NSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRN---GTLDYTRPHLVELMNSTG  189 (466)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~~w~~~~~---~~~~~~rp~~i~~~~~~n  189 (466)
                      ++++|+..               ..+.||++.+.+||+|+|. |+|||+|+.||+....   ......||++|.|.+|+|
T Consensus       124 d~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~n  187 (443)
T PLN02793        124 DPDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKD  187 (443)
T ss_pred             ChHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeecc
Confidence            99888632               1246899999999999997 9999999999975321   112235899999999999


Q ss_pred             eEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCC
Q 012308          190 VIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGR  269 (466)
Q Consensus       190 v~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~  269 (466)
                      ++|++++++|+|+|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++          
T Consensus       188 v~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~----------  257 (443)
T PLN02793        188 LRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN----------  257 (443)
T ss_pred             EEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC----------
Confidence            9999999999999999999999999999999999889999999999999999999999999999999986          


Q ss_pred             CceeEEEEEEEEecCCCCeEEEceec----CCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeE
Q 012308          270 PSTKITIHGLIGETKLGAGIAIGSEM----SGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAI  345 (466)
Q Consensus       270 ~s~nI~I~n~~~~~~~~~gi~Igs~~----~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i  345 (466)
                       ++||+|+||+|..  +|||+|||+.    .++++||+|+||+|.++.+|++||+|+|++|.|+||+|+||+|+++.+||
T Consensus       258 -s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI  334 (443)
T PLN02793        258 -SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPI  334 (443)
T ss_pred             -cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceE
Confidence             8999999999975  6999999973    46799999999999999999999999998999999999999999999999


Q ss_pred             EEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeee-ceeEEEEccCCCCeeeEEEEeEEEEcC--CCCCeEEeeeecccC
Q 012308          346 IFTGHFGEHPDDSYDPSALPIIERITIKNVIGENV-KMAGQLEGIEGDTFRYICLSNIKLNGV--SESPWNCSYIQGYSD  422 (466)
Q Consensus       346 ~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~-~~~~~i~g~~~~~~~~I~~~Ni~i~~~--~~~~~~c~~v~g~~~  422 (466)
                      .|++.|+.....+..+...+.|+||+|+||+++.. ..++.+.|+++.||+||+|+||+++..  +...+.|+|++|...
T Consensus       335 ~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~  414 (443)
T PLN02793        335 IIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSS  414 (443)
T ss_pred             EEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeEC
Confidence            99999965322222233346899999999999985 457899999999999999999999873  234689999999886


Q ss_pred             c-cCCCCCCCc
Q 012308          423 L-VFPETCDPL  432 (466)
Q Consensus       423 ~-~~p~~c~~~  432 (466)
                      . +.|.||.+.
T Consensus       415 ~~~~p~~C~~~  425 (443)
T PLN02793        415 GQVYPPPCFSD  425 (443)
T ss_pred             CeEcCCccccC
Confidence            5 778889754

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-41
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 9e-23
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-19
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 8e-09
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-08
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 8e-08
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-06
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 6e-04
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 188/406 (46%), Gaps = 55/406 (13%)
Query: 41  HSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTL 100
             V++ +FGA GDG T  +++F+ AI      + +GG +L VP G +LTG   L S++ L
Sbjct: 26  REVNLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLKSNIEL 82
Query: 101 WLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDG 160
            + K  +          PV+  L  +  G EL    +  L++  +  +V ITG +G +DG
Sbjct: 83  HV-KGTIKFIPDPERYLPVV--LTRF-EGIELYN--YSPLVYALDCENVAITG-SGVLDG 135
Query: 161 QG--SIWWEWFRN----------------------------------GTLDYTRPHLVEL 184
                 WW W                                     G   Y RP  V+ 
Sbjct: 136 SADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQF 195
Query: 185 MNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKD 244
                V++  +  +N P W IHPV   +V ++N+ I +    PN DGIDP+S   + I+ 
Sbjct: 196 YRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEK 253
Query: 245 CYISTGDDLVSIKSGWDEYGISYGRPSTKITIH-GLIGETKLGAGIAIGSEMSGGVSEVH 303
           C   TGDD V IKSG D  G   G PS  I +   L+       G+ IGSEMSGGV  V 
Sbjct: 254 CRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVV 313
Query: 304 AENLYFFNSVRGIRIKTSPGRGGYVRNI-SISNVTLNHVDVAIIFTGHFGEHPDDSYDPS 362
           A N  + N  R +R+KT+  RGGY+ NI  I NV +N  +  I     +     D+ +  
Sbjct: 314 ARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRY-----DNEEGE 368
Query: 363 ALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVS 408
            LP++  + +KN+     K A ++EG+E D  + I +S+  + G  
Sbjct: 369 YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAK 414
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-140
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-136
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-134
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 7e-83
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 5e-82
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-77
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 9e-76
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 6e-66
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-61
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-60
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 4e-55
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-49
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-46
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-43
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 5e-30
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 3e-11
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-11
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-04
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 2e-09
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 4e-04
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 9e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  409 bits (1052), Expect = e-140
 Identities = 117/409 (28%), Positives = 182/409 (44%), Gaps = 53/409 (12%)

Query: 37  VFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLIS 96
                 V++ +FGA GDG T  +++F+ AI      + +GG +L VP G +LTG   L S
Sbjct: 22  QIPDREVNLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLKS 78

Query: 97  HLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNG 156
           ++ L +      +        PV+       R   +    +  L++  +  +V ITG +G
Sbjct: 79  NIELHVKGTIKFIPDPERY-LPVV-----LTRFEGIELYNYSPLVYALDCENVAITG-SG 131

Query: 157 TIDGQG--SIWWEWFRN----------------------------------GTLDYTRPH 180
            +DG      WW W                                     G   Y RP 
Sbjct: 132 VLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPS 191

Query: 181 LVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDV 240
            V+      V++  +  +N P W IHPV   +V ++N+ I +    PN DGIDP+S   +
Sbjct: 192 FVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM 249

Query: 241 CIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLG-AGIAIGSEMSGGV 299
            I+ C   TGDD V IKSG D  G   G PS  I +   +  ++    G+ IGSEMSGGV
Sbjct: 250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGV 309

Query: 300 SEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSY 359
             V A N  + N  R +R+KT+  RGGY+ NI   +    +V   +I      ++ +   
Sbjct: 310 RNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEG-- 367

Query: 360 DPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVS 408
               LP++  + +KN+     K A ++EG+E D  + I +S+  + G  
Sbjct: 368 --EYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAK 414
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 100.0
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.92
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.89
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.89
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.87
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.85
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.72
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.7
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.62
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.41
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.39
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.34
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.3
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.3
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.22
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.2
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.64
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.64
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.57
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.55
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.49
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.42
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.38
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.37
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.37
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.36
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.21
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.15
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.09
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.04
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.89
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.82
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.8
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.8
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.78
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.77
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.76
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.75
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.72
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.72
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.66
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.59
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.54
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.32
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.19
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.33
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.91
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.5
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.22
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.0
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.39
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 92.73
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 92.01
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 91.81
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 89.4
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 87.95
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 85.66
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.3e-69  Score=559.18  Aligned_cols=361  Identities=33%  Similarity=0.572  Sum_probs=317.3

Q ss_pred             CCCCeeEEEeecCccCCCcchhHHHHHHHHHHhhccccCCCcEEEecCCcceEeeEEeecCceEEecCCcEEecCCCCCC
Q 012308           37 VFRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDT  116 (466)
Q Consensus        37 ~~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~Y~~~~l~l~s~~tL~l~~ga~i~~~~~~~~  116 (466)
                      ..++.++||+||||+|||++|||+|||+||++|+   +.+|++|+||+|+|++++|.|+|+++|+++  |+|++++++++
T Consensus        22 ~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~---~~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~~   96 (448)
T 3jur_A           22 QIPDREVNLLDFGARGDGRTDCSESFKRAIEELS---KQGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPER   96 (448)
T ss_dssp             CCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHH---HHTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGGG
T ss_pred             CCCCcEEEEEecccCCCCCeecHHHHHHHHHhhh---hcCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHHH
Confidence            4577899999999999999999999999999986   467899999999999999999999999998  99999999998


Q ss_pred             C-CCCCCCCCCCcccccCCCcceeeEEEecceeeEEeCcceeeeCCc--chhhhhhcCC---------------------
Q 012308          117 W-PVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQG--SIWWEWFRNG---------------------  172 (466)
Q Consensus       117 ~-~~~~~~~~~~~g~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G--~~~w~~~~~~---------------------  172 (466)
                      | +...  + ..+|.+  ...+.+||++.+++||+|+|. |+|||+|  +.||+.....                     
T Consensus        97 y~p~~~--~-~~~G~~--~~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~  170 (448)
T 3jur_A           97 YLPVVL--T-RFEGIE--LYNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEM  170 (448)
T ss_dssp             GCSCEE--E-EETTEE--EEESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHH
T ss_pred             hCcccc--c-cccccc--ccCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhhhh
Confidence            8 4321  1 112221  124568999999999999997 9999999  8899743210                     


Q ss_pred             -------------CCCCCCCeeEEEEeecceEEeeEEEecCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCcc
Q 012308          173 -------------TLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDD  239 (466)
Q Consensus       173 -------------~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~n  239 (466)
                                   .....||.+|.|.+|+|++|+|++++|+|+|++++..|+||+|++++|.++  ++|+||||+.+|+|
T Consensus       171 ~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~n  248 (448)
T 3jur_A          171 AERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKY  248 (448)
T ss_dssp             HHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEE
T ss_pred             hcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcC
Confidence                         123579999999999999999999999999999999999999999999997  68999999999999


Q ss_pred             EEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEEEEEecCCCC-eEEEceecCCcEEEEEEEeEEEEcCceeEEE
Q 012308          240 VCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHGLIGETKLGA-GIAIGSEMSGGVSEVHAENLYFFNSVRGIRI  318 (466)
Q Consensus       240 V~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~-gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I  318 (466)
                      |+|+||+|.++||||+++++++.+|..++.|++||+|+||+|++..+| ||+|||++.++++||+|+||+|.++.+|++|
T Consensus       249 V~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirI  328 (448)
T 3jur_A          249 MLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRL  328 (448)
T ss_dssp             EEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEE
T ss_pred             EEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEE
Confidence            999999999999999999999999988899999999999999543245 9999999999999999999999999999999


Q ss_pred             EecCCCCeeEEEEEEEceEEcCcceeE-EEeeecCCCCCCCCCCCCCCeEEeEEEEEEEEeeeceeEEEEccCCCCeeeE
Q 012308          319 KTSPGRGGYVRNISISNVTLNHVDVAI-IFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYI  397 (466)
Q Consensus       319 ~s~~g~~g~v~nI~~~ni~i~~~~~~i-~i~~~y~~~~~~~~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~~~~~~~~I  397 (466)
                      |++.+++|.|+||+|+|++|+++.+++ .|++.|+..     .+...+.|+||+|+||++++...++.|.|+++.||+||
T Consensus       329 Kt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I  403 (448)
T 3jur_A          329 KTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDI  403 (448)
T ss_dssp             ECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEE
T ss_pred             EEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeE
Confidence            999988999999999999999999988 999998763     12335689999999999998778999999999999999


Q ss_pred             EEEeEEEEcCCCCCeEEee
Q 012308          398 CLSNIKLNGVSESPWNCSY  416 (466)
Q Consensus       398 ~~~Ni~i~~~~~~~~~c~~  416 (466)
                      +|+||++++.+. ...|.+
T Consensus       404 ~~~nv~i~~~~~-~~~~~~  421 (448)
T 3jur_A          404 LISDTIIEGAKI-SVLLEF  421 (448)
T ss_dssp             EEEEEEEESCSE-EEEEEE
T ss_pred             EEEEEEEEcccc-ceeEec
Confidence            999999997432 245555
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 466
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 8e-75
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-56
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-56
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 9e-51
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-50
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-49
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 8e-48
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 9e-48
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-23
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-04
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 0.002
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  237 bits (606), Expect = 8e-75
 Identities = 94/383 (24%), Positives = 154/383 (40%), Gaps = 40/383 (10%)

Query: 50  AVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQ---WLTGSFDLISHLTLWLDKDA 106
            +    +  T   Q A+   +      G  + + AG    +L+G   L S ++L +DK  
Sbjct: 17  TLKADSSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGV 71

Query: 107 VILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQ----- 161
            +    N+ ++      PS     +  G    + I   + T+  I    GTIDGQ     
Sbjct: 72  TLRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIY-GPGTIDGQGGVKL 127

Query: 162 ---GSIWWEWFRNG---TLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKV 215
                 WWE   +     L    P L+++  S    + N++ +N P + +          
Sbjct: 128 QDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTA 187

Query: 216 QNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKIT 275
              TI+ P  + NTDGIDP SS ++ I    I+TGDD V+IK+            +  I+
Sbjct: 188 WKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNIS 241

Query: 276 IHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISN 335
           I         G G++IG   + GV  V  ++L    +  G+RIK+     G V  +  SN
Sbjct: 242 ILHND--FGTGHGMSIG-SETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSN 298

Query: 336 VTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFR 395
           V + +V   I+    +     +  + S +P    IT K+V  E  K    L G       
Sbjct: 299 VVMKNVAKPIVIDTVY-----EKKEGSNVPDWSDITFKDVTSET-KGVVVLNGENAKKPI 352

Query: 396 YICLSNIKLNGVSESPWNCSYIQ 418
            + + N+KL   S+S W    + 
Sbjct: 353 EVTMKNVKL--TSDSTWQIKNVN 373
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.85
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.84
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.84
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.82
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.73
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.62
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.52
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.74
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.58
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.33
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.19
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.16
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.04
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.76
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.47
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.39
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.25
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.11
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.06
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.03
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.02
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.74
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.68
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.62
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.49
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 92.97
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.15
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 91.84
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 83.74
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 82.56
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=1.3e-60  Score=482.61  Aligned_cols=340  Identities=28%  Similarity=0.416  Sum_probs=295.8

Q ss_pred             CCcchhHHHHHHHHHHhhccccCCCcEEEecCCc---ceEeeEEeecCceEEecCCcEEecCCCCCCCCCCCCCCCCCcc
Q 012308           53 DGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQ---WLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRG  129 (466)
Q Consensus        53 Dg~tddT~Aiq~Ai~~a~~~~~~gg~tV~iP~G~---Y~~~~l~l~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g  129 (466)
                      ++.+|||+|||+||++|     .+|++|+||+|+   |++++|.|+|+++|+|++||+|+++.+.++|+..+   ....+
T Consensus        20 ~~~~~~T~aIq~AIdac-----~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~~y~~~~---~~~~~   91 (376)
T d1bhea_          20 ADSSTATSTIQKALNNC-----DQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAP---SSCGV   91 (376)
T ss_dssp             CCSSBCHHHHHHHHTTC-----CTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSGGGBSST---TCSSC
T ss_pred             CCCChhHHHHHHHHHHC-----CCCCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEEcCCHHHccccc---ceeee
Confidence            35679999999999987     347899999998   78899999999999999999999999999987543   22233


Q ss_pred             cccCCCcceeeEEEecceeeEEeCcceeeeCCcch--------hhhhhcC---CCCCCCCCeeEEEEeecceEEeeEEEe
Q 012308          130 RELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSI--------WWEWFRN---GTLDYTRPHLVELMNSTGVIISNLTFL  198 (466)
Q Consensus       130 ~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~G~~--------~w~~~~~---~~~~~~rp~~i~~~~~~nv~I~~v~i~  198 (466)
                      .+..+..+.++|.+.+++||+|+|. |+|||+|..        ||+....   ......||++|.|.+|+|++|+|++++
T Consensus        92 ~~~~~~~~~~~i~~~~~~Ni~ItG~-G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~~iti~  170 (376)
T d1bhea_          92 VDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLI  170 (376)
T ss_dssp             EESCSCCBCCSEEEESCBSCEEECS-SEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEE
T ss_pred             EeccCcccceeEEecCcceEEEEeC-cEEecccceeecCCccchhccccccccccCCCCCCeEEEEEecccEEEEeeEEe
Confidence            3334455678999999999999997 999999964        5542211   123457999999999999999999999


Q ss_pred             cCCceEEEEeccccEEEEeEEEEcCCCCCCCCCcCCCCCccEEEEeeEEEcCCceEeecCCCCccCcccCCCceeEEEEE
Q 012308          199 NPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITIHG  278 (466)
Q Consensus       199 ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n  278 (466)
                      |++.|++++..|++++|+|++|.++...+|+|||++.+|+||+|+||+|.++||||++|++.+      ..+++||+|+|
T Consensus       171 ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~------~~~~~ni~i~n  244 (376)
T d1bhea_         171 NSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNISILH  244 (376)
T ss_dssp             CCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTT------SCCEEEEEEEE
T ss_pred             cCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeecccC------CCCcceEEEEe
Confidence            999999999999999999999999888899999999999999999999999999999999743      23589999999


Q ss_pred             EEEecCCCCeEEEceecCCcEEEEEEEeEEEEcCceeEEEEecCCCCeeEEEEEEEceEEcCcceeEEEeeecCCCCCCC
Q 012308          279 LIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDS  358 (466)
Q Consensus       279 ~~~~~~~~~gi~Igs~~~~~v~nI~i~n~~i~~~~~Gi~I~s~~g~~g~v~nI~~~ni~i~~~~~~i~i~~~y~~~~~~~  358 (466)
                      |+|..  ++|++||++.. +++||+|+||+|.++..|++||++.+++|.|+||+|||++|+++++||.|++.|....   
T Consensus       245 ~~~~~--~~g~~iGs~~~-~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~---  318 (376)
T d1bhea_         245 NDFGT--GHGMSIGSETM-GVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKE---  318 (376)
T ss_dssp             EEECS--SSCEEEEEEES-SEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCC---
T ss_pred             eEEec--CCCceeccccC-CEEEEEEEeeeEcCCCceEEEEecCCCccEEEEEEEEeEEEeccCccEEEEeecCCCC---
Confidence            99986  58999999864 5999999999999999999999999889999999999999999999999998876532   


Q ss_pred             CCCCCCCeEEeEEEEEEEEeeeceeEEEEccCCCCeeeEEEEeEEEEcCCCCCeEEeeee
Q 012308          359 YDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYIQ  418 (466)
Q Consensus       359 ~~~~~~~~v~nIt~~nI~~~~~~~~~~i~g~~~~~~~~I~~~Ni~i~~~~~~~~~c~~v~  418 (466)
                        +...|.++||+|+||+++.. .++.+.|.++.+|+||+|+||++++  ...+.|+||.
T Consensus       319 --~~~~~~i~nIt~~Ni~~~~~-~~~~l~g~~~~~~~~v~~~nv~i~~--~~~~~~~nv~  373 (376)
T d1bhea_         319 --GSNVPDWSDITFKDVTSETK-GVVVLNGENAKKPIEVTMKNVKLTS--DSTWQIKNVN  373 (376)
T ss_dssp             --CCCCCEEEEEEEEEEEECSC-CEEEEECTTCSSCEEEEEEEEECCT--TCEEEEESEE
T ss_pred             --CCCCCEEeeEEEEeEEEecc-eeEEEEcCCCCCceeEEEEeEEEEc--CCCCEEEeee
Confidence              34457899999999999864 5788999999999999999999976  3468999986
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure