Citrus Sinensis ID: 012312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHcccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccHHHHHHHHcccccEcHHHHHccccccccccHHHcccccccccccccEEccccccccHHHccccccccccccccccEEEccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcc
Coil and Loop (DISEMBL)
MAMVQLCckipskeqllpipkivrqnergfkchcisltensrfsstsdnMCKRwrsiypnqdvaelpvqwkmsnitshvgsfskkastKEKLRMVRCaakssdseCQIRILESYLAKlkddsiqnssessgeieelhsrsgeinaktELDSLDAYLGKLntdakfstdqttERNLVAAQLSIsksskrgymgklkgyrelrnkdgVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIaspirnsefgffslpllygakINELILVGEWWRLVTPMFLHSGLFHVALSCWALLtfgpqvcksygpfTFFLIYTLggisgnltsflhtpeptvggtgpVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIsnfgpvdtwaHLGAAFTGIIYGFLtcplvqlgdassrnsqEEGITLIRQYANPCKSLIVFTIFVIILGSfifvfeppldtlalr
Flexible Loop (DISEMBL)
MAMVQLCckipskeqllpipKIVRQNERGFKCHCIsltensrfsstsDNMCKRWRSIYPNQDVAELPVQWKMSNItshvgsfskkastkeKLRMVRcaakssdsecqIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDakfstdqtternlvaaqlsisksskrgymgklkgyrelrnkdgvrslERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Low Complexity Region (SEG)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Disordered region (IsUnstruct)
***VQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHV**************************CQIRILESYLA**************************************YL**************************************************************EETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD********EGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPL******
Disordered Region (DISOPRED)
*AMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTE********************NQDVAELPVQWKMSNITSHVGS*******************************SYLAKLKDDSIQ**************************SLDAYLGKLN**************************************************************NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Disordered Region (DISEMBL)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVG************************ECQIRILESYLAKLKD********************GEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Disordered Region (DISPRO)
*AMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKD**********GEIEELHSRSGEINAKTELDSLDAYLGKLNT******************LSIS***KRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTLALR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
P54493	507	Rhomboid protease GluP OS	yes	no	0.362	0.333	0.342	1e-22
P96617	199	Putative rhomboid proteas	no	no	0.285	0.668	0.311	3e-13
P46116	281	Rhomboid protease AarA OS	yes	no	0.358	0.594	0.297	1e-12
Q695T9	283	Rhomboid-like protease 2	N/A	no	0.360	0.593	0.303	2e-11
Q695T8	641	Rhomboid-like protease 4	N/A	no	0.326	0.237	0.3	7e-09
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.266	0.471	0.323	3e-08
Q6GMF8	857	Inactive rhomboid protein	no	no	0.364	0.198	0.236	6e-08
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.302	0.164	0.277	3e-07
Q96CC6	855	Inactive rhomboid protein	yes	no	0.302	0.164	0.270	4e-07
B0VX73	855	Inactive rhomboid protein	yes	no	0.302	0.164	0.270	4e-07

>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 12/181 (6%)

Query: 238 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALL 297
           FL EI     N+E       + +GAK N LI  GEWWRL+TP+ LH G+ H+A +  AL 
Sbjct: 192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALW 246

Query: 298 TFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNK 357
           + G  V + YG   F LIY   GI+G++ SF+ +P P+ G +G +F  +GA L     N+
Sbjct: 247 SVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNR 306

Query: 358 DLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDAS 417
            +  + +   +    I++    F +SN   +D   H+G    G+I GF     + L  A 
Sbjct: 307 KMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAG 359

Query: 418 S 418
           +
Sbjct: 360 A 360

Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%)

Query: 271 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 330
           GEWWRL+TP+ LH+G  H+  +  ++  F P + +  G   F L+Y   GI GN+ +++ 
Sbjct: 56  GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115

Query: 331 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 388
            P     VG +G +F + G +L       +LI ++ S+ +      +  +SFI SN   +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172

Query: 389 DTWAHLGAAFTGIIYGFL 406
           +  AHL     G +  FL
Sbjct: 173 NMMAHLFGLCGGFLLSFL 190

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)

Query: 230 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
           LV +++AV+ ++I  ASP+ + E    S  +L+GA I +L L G+WWR    M LHS   
Sbjct: 27  LVLLNIAVYFYQIVFASPLDSRE----SNLILFGANIYQLSLTGDWWRYPISMMLHSNGT 82

Query: 288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT----------- 335
           H+A +C AL   G    ++YG F    IY + GI   L +++    E +           
Sbjct: 83  HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDSTVY 142

Query: 336 ----VGGTGPVFAIIGAWLIYQFQ------NKDLIAKDVSERMFQKAILSTALSFIISNF 385
               VG +G +  I  A +IY  +      N   + +   +      I   AL+ I    
Sbjct: 143 ITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQ 202

Query: 386 GPVDTWAHLGAAFTG 400
             VD  AH+G A  G
Sbjct: 203 SGVDNAAHIGGAIIG 217

Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N-terminal extension.

Providencia stuartii (taxid: 588)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 20/188 (10%)

Query: 227 ISILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 283
           I I+  + +AV++  +A+ +  +E      P   +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62  IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120

Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 341
             LFH+ ++ W  +  G  + + YG      +Y   G+  N+ S   L   +   G +  
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180

Query: 342 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGAA 397
           VFA+IG     Q     LI   + +R    AI+S  +      +S+FG  +D+  H+G  
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIG-- 232

Query: 398 FTGIIYGF 405
             G++ GF
Sbjct: 233 --GLVMGF 238

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 259 LYGAKINELILVGEWWRLVTPMFLHSGLFHV--ALSCWALLTFGPQVCKSYGPFTFFLIY 316
           L G + N +    E +RL T M++H G  H+   LSC   + +   +   +G     L++
Sbjct: 328 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 385

Query: 317 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 375
            LGGISGNL S +  P   TVG +G ++A++GA + Y  +    I +     +F   ++ 
Sbjct: 386 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 444

Query: 376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD 415
             +  +    G  D +AH+G A  GI++GF +   V   D
Sbjct: 445 --IGILTGMAGFTDNYAHMGGALGGILWGFASITTVSACD 482

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
           WR+VTP+FLH+ + H+ L+   +L    ++ + YG   F + Y L  I GNL S L  P 
Sbjct: 84  WRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPW 143

Query: 334 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE---RMFQKAILSTALSFIISNFG-PV 388
             +VG +   F IIG           ++   +SE   R++   I   A+     +FG  V
Sbjct: 144 ALSVGASTAGFGIIGG----MAAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTV 199

Query: 389 DTWAHLGAAFTGI 401
           DT+ HLG    G+
Sbjct: 200 DTFGHLGGFLAGV 212

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L GI+GNL S +  
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
           P    VG  G  F I+    +   Q+  ++A+    R F K +      F       +D 
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQ--PWRAFTKLLCVVLFLFAFGLLPWIDN 771

Query: 391 WAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
           +AH+    +G    F   P +  G              +  Y   C+ +I   +F+ +  
Sbjct: 772 FAHISGFISGFFLSFAFLPYISFGR-------------LDMYRKRCQIIIFLVVFLGLFA 818

Query: 451 SFIFVF 456
             + +F
Sbjct: 819 GLVVLF 824

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L GI+GNL S +  
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770

Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
           +AH+    +G+   F   P +  G
Sbjct: 771 FAHISGFVSGLFLSFAFLPYISFG 794

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L G++GNL S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 769

Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
           +AH+    +G+   F   P +  G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 331
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L G++GNL S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 332 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 390
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPW--RAFFKLLAVVLFLFTFGLLPWIDN 769

Query: 391 WAHLGAAFTGIIYGFLTCPLVQLG 414
           +AH+    +G+   F   P +  G
Sbjct: 770 FAHISGFISGLFLSFAFLPYISFG 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
224127432	492	predicted protein [Populus trichocarpa]	0.989	0.936	0.524	1e-144
225451989	486	PREDICTED: uncharacterized protein LOC10	0.989	0.948	0.541	1e-138
296087301	523	unnamed protein product [Vitis vinifera]	0.989	0.881	0.541	1e-137
255551392	429	conserved hypothetical protein [Ricinus	0.806	0.876	0.586	1e-130
356545710	503	PREDICTED: uncharacterized protein LOC10	0.987	0.914	0.493	1e-127
356573948	468	PREDICTED: uncharacterized protein LOC10	0.920	0.916	0.491	1e-116
147826430	585	hypothetical protein VITISV_003619 [Viti	0.924	0.736	0.501	1e-112
449439033	477	PREDICTED: uncharacterized protein LOC10	0.834	0.815	0.496	1e-107
449483332	479	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.834	0.812	0.489	1e-104
15240938	434	rhomboid-related intramembrane serine pr	0.851	0.914	0.459	4e-99

>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa] gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/492 (52%), Positives = 332/492 (67%), Gaps = 31/492 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPN 60
           MA+V +C KIP K+  L I  + RQ+ERG  C C +  +   + S S ++ + W  IY  
Sbjct: 1   MAVVPICYKIPCKDHTLSIRNLARQHERGLLCACSAFAQGGSYLSISSDVQRNWPVIYTT 60

Query: 61  QDV--------------------AELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAK 100
            DV                      L  Q  M     H+    +  +++E L +  CA+K
Sbjct: 61  ADVLVKVKTRGRTNASKGTILNQGLLKFQSVMD--VPHLHKIHR--TSRENLSVACCASK 116

Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
           S  +E Q+R+L+SY  KL+D+  + SS+S  E  +      +IN K EL+ L+AYL K++
Sbjct: 117 SGTNEKQLRLLDSYFGKLQDNVSEPSSDSCNERTDFLDTRVQINVKEELEYLNAYLDKVD 176

Query: 161 TDAKFS-------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
            DA           D+ TE N +   +S+SK S+R    +L+ +R LRN+       R  
Sbjct: 177 KDANLENNVSSTFNDEATEENPIVKPISVSKESRRDNEERLRSFRNLRNQYVESGSRRSE 236

Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
           AL++  ETS  YLI  L SI++AVFLFEIASP+RNSEF  FSLPLLYGAKINELILVGEW
Sbjct: 237 ALEQNYETSYFYLIGTLASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEW 296

Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
           WRLVTPMFLHSG FHV L  W+LLTFGP+VC+ YG FTFFLIY LGGISGNLTSFLHTPE
Sbjct: 297 WRLVTPMFLHSGAFHVVLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPE 356

Query: 334 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
           PTVGGTGPVFAIIGAWLIYQ QNKD+I+KD  +RMFQKA+++TA+SFI+S+FGP+D W H
Sbjct: 357 PTVGGTGPVFAIIGAWLIYQNQNKDVISKDDFDRMFQKAVITTAVSFILSHFGPIDDWTH 416

Query: 394 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFI 453
           LGA  TGI+YGF TC  +QL DASSR+ Q+EGI L++++A+PCKSLI+FTIF++ L S +
Sbjct: 417 LGAVLTGIVYGFFTCATLQLDDASSRSGQDEGIALVKRHADPCKSLIIFTIFILFLSSML 476

Query: 454 FVFEPPLDTLAL 465
           F  EPPL+T+ L
Sbjct: 477 FFVEPPLETVVL 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/486 (54%), Positives = 329/486 (67%), Gaps = 25/486 (5%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 1   MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 57  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236

Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
           ETS+LYLISILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296

Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356

Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416

Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPP 459
           GI YG+ TCP +QL   SS+  Q+EGITL+R+YA+PCKSLI+FT+FV++L   +F  EPP
Sbjct: 417 GIAYGYFTCPTIQLNHTSSKTGQKEGITLVRRYADPCKSLIIFTLFVLVLICVLFFIEPP 476

Query: 460 LDTLAL 465
           L+TL  
Sbjct: 477 LNTLVF 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/486 (54%), Positives = 329/486 (67%), Gaps = 25/486 (5%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 38  MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 93

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 94  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 153

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 154 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 213

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 214 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 273

Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
           ETS+LYLISILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 274 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 333

Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 334 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 393

Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 394 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 453

Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPP 459
           GI YG+ TCP +QL   SS+  Q+EGITL+R+YA+PCKSLI+FT+FV++L   +F  EPP
Sbjct: 454 GIAYGYFTCPTIQLNHTSSKTGQKEGITLVRRYADPCKSLIIFTLFVLVLICVLFFIEPP 513

Query: 460 LDTLAL 465
           L+TL  
Sbjct: 514 LNTLVF 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis] gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/401 (58%), Positives = 295/401 (73%), Gaps = 25/401 (6%)

Query: 70  WKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSES 129
           W M    S +GS + K S  EK               Q+R+L+SY  KL+ D+ Q S++S
Sbjct: 32  WSMKGENSSMGSHASKTSINEK---------------QLRLLDSYFGKLQGDANQPSTDS 76

Query: 130 SGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-------STDQTTERNLVAAQLSI 182
           S E  +L ++S EIN   EL SL++YL KL+ D+         S D TTE   +   +S+
Sbjct: 77  SDETTKLGNKSKEINPTEELQSLNSYLDKLSKDSNLENYVSSTSDDLTTESEKL---VSV 133

Query: 183 SKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEI 242
            + SKRG   K K + +LR KD  R L R  ALQ+ +ETS+LYL SILVSI++AVFLFE+
Sbjct: 134 YEDSKRGEEEKPKSFVKLREKDANRGLRRSQALQQNDETSDLYLTSILVSINIAVFLFEL 193

Query: 243 ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 302
           ASP+RNSEF  F+LPLLYGAKIN+LILVGEWWRL+TPMFLHSG+FH+AL CW+LLTFGPQ
Sbjct: 194 ASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGVFHMALGCWSLLTFGPQ 253

Query: 303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 362
           V + YG FTF LI+ LGGISGNLTSFLHTPEPTVGGTGP+FAIIGAWL++Q QNKD+IAK
Sbjct: 254 VSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAIIGAWLVFQMQNKDVIAK 313

Query: 363 DVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQ 422
           D+SE MFQKAI+ T LSFI+S+FGP+D W HLGA  TGI+YG+ TCP +QL +ASSR+ Q
Sbjct: 314 DISESMFQKAIIITGLSFILSHFGPIDDWTHLGATLTGIVYGYFTCPTLQLDNASSRSGQ 373

Query: 423 EEGITLIRQYANPCKSLIVFTIFVIILGSFIFVFEPPLDTL 463
           +EG+  +R YAN CKSLI+F + +++L S +F  EPPLDTL
Sbjct: 374 DEGVAFVRGYANSCKSLILFAVLIVLLISLLFFIEPPLDTL 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/490 (49%), Positives = 321/490 (65%), Gaps = 30/490 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCK------RW 54
           MA   +  K P K+Q LP   I+RQNE+ F   C +L  +   SS    +C+      + 
Sbjct: 1   MAAFPMFYKTPYKDQNLPTQNIMRQNEKRFMLECDNLHRS--ISSIPGQICRSCQPWNKV 58

Query: 55  RSIYPNQDVAELPVQWKM--------SNITSHVGSFSKKA------STKEKLRMVRCAAK 100
            +I    ++ E  V   +         N+T   GS S  +      S  E L  V C+A 
Sbjct: 59  NNILTKSNIKEKNVTRSILHDRCSLHKNVTKLCGSDSHLSLIQGCYSKTENLSRVWCSAS 118

Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
           SS +E Q+R L+SY  KL+D++  ++ +SS ++ ++H       +KT L+SLD YLGKLN
Sbjct: 119 SSSTEKQLRSLDSYFGKLQDNAKLSTFDSSHKVIQVHHIDDHARSKTGLESLDEYLGKLN 178

Query: 161 TDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLA 214
             A          +  +E NL A + S++K  +R    K   Y ++    GV      + 
Sbjct: 179 RGANQEPHVPSYVENRSEENL-APKRSLTKDIERSNFRKRNAYVDIGRLKGVHGPRSAID 237

Query: 215 LQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWW 274
            Q+  ETS+LYLI IL S+++AVFLFEIASPIRNS+   FS+PLLYGAKIN LI+VGEWW
Sbjct: 238 SQQHVETSSLYLIGILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKINHLIMVGEWW 297

Query: 275 RLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP 334
           RLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N  SFLHTP+P
Sbjct: 298 RLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLHTPDP 357

Query: 335 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 394
           TVGGTGPVFAIIGAWL+YQ QNKD+IA D SE +F KA++ TAL FI+S+FGP+D W+H 
Sbjct: 358 TVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIMTALIFILSHFGPIDEWSHF 417

Query: 395 GAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIF 454
           GAAF+G+ YGFLT P++QL D+SS   Q EG+ L+R+Y + CKS+ +FTIF+I+L SF+F
Sbjct: 418 GAAFSGMAYGFLTSPILQLNDSSSGTGQ-EGLKLVRKYGDSCKSVFIFTIFIIVLSSFLF 476

Query: 455 VFEPPLDTLA 464
             EPP + LA
Sbjct: 477 FMEPPPNALA 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/460 (49%), Positives = 302/460 (65%), Gaps = 31/460 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRF-SSTSDNMCKR---W-- 54
           MA   +  K P K+Q LP   ++RQNE+ F   C ++    RF SST   +C+    W  
Sbjct: 1   MAAFPMFYKTPYKDQNLPTQNVMRQNEKRFMYECDNM---KRFISSTPGQICRSSQPWNK 57

Query: 55  ------RSIYPNQDVAELPVQWKMS---NIT------SHVGSFSKKASTKEKLRMVRCAA 99
                 +S    ++V    +  + S   N+T      SH+    +  S  E L  V C+A
Sbjct: 58  VNNVLTKSNTKERNVPRSILHGRCSLHKNVTKLCGSDSHLSLIKECYSKTENLSRVWCSA 117

Query: 100 KSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKL 159
            SS +E Q+R L+SY  KL+D++   + +SS ++ +LH    +  +KT L+SL+ YLGKL
Sbjct: 118 GSSSTEKQLRSLDSYFGKLQDNAKLRTFDSSHKVIQLHHIDRQARSKTGLESLEEYLGKL 177

Query: 160 NTDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
           N +A          +  +E NL A + S+SK  +R    K   + ++R    +      +
Sbjct: 178 NHEANQEPCVPSYVENHSEENL-APKRSLSKDIERSNFRKQNAFVDIRRLKRLHDPRSAI 236

Query: 214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 273
             Q+  ETS+LYLI IL S+++AVFLFEIASPIR S+   FS+PLLYGAKIN LI+VGEW
Sbjct: 237 DSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINHLIMVGEW 296

Query: 274 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 333
           WRLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N TSFLHT +
Sbjct: 297 WRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFTSFLHTSD 356

Query: 334 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 393
           PTVGGTGPVFAIIGAWL+YQ QNK +IA D SE +FQKA++ TAL FI+S+FGP+D W+H
Sbjct: 357 PTVGGTGPVFAIIGAWLMYQIQNKHVIASDASENLFQKAVIMTALIFILSHFGPIDEWSH 416

Query: 394 LGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYA 433
            GAAF+G+ YGFLT P++QL D+SS   QEEG+ L+R+YA
Sbjct: 417 FGAAFSGMAYGFLTSPILQLNDSSSGTGQEEGLKLVRKYA 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/471 (50%), Positives = 296/471 (62%), Gaps = 40/471 (8%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 1   MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 57  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236

Query: 220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 279
           ETS+LYLISILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296

Query: 280 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 339
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356

Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416

Query: 400 GIIYGFLTCPLVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
                  +  L  L  A+ R          R    P  + + F +++IILG
Sbjct: 417 A------SAELEALMMATGRGG--------RSLMGPLLA-VNFVVYLIILG 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/429 (49%), Positives = 280/429 (65%), Gaps = 40/429 (9%)

Query: 70  WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
           W++ +  S V + S +A    +     L  VRC+                  + S +E Q
Sbjct: 50  WEIHDNDSSVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109

Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
           +R L SY  +L+    + + +S  +++ L   +G+  AK EL  LDAY  K++ D     
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167

Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
               S D+  E  LV    + S S  R    +L+  R ++    + +S+     LQ  EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDRVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222

Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
             +LYLIS LVSI++AVFLFE+ASP++NSE   FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282

Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTG 340
           FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGGTG
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTG 342

Query: 341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTG 400
           PVFA+IGAWL YQFQNKD++ KDVS++MF KA+++  +S I+SN GP+D W H GAAF+G
Sbjct: 343 PVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFSG 402

Query: 401 IIYGFLTCPLVQLGDA----SSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIFVF 456
           ++YGFLT P+V++ DA    SSR  QE+GI L+R+YANPC+SL  F +F++   S +F  
Sbjct: 403 MLYGFLTSPIVEVNDASSSSSSRRGQEKGIKLVRKYANPCRSLAFFVLFIMGFISLVFFI 462

Query: 457 EPPLDTLAL 465
           +PP     L
Sbjct: 463 QPPFHHFGL 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746 [Cucumis sativus]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/431 (48%), Positives = 278/431 (64%), Gaps = 42/431 (9%)

Query: 70  WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
           W++ +  S V + S +A    +     L  VRC+                  + S +E Q
Sbjct: 50  WEIHDNDSPVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109

Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
           +R L SY  +L+    + + +S  +++ L   +G+  AK EL  LDAY  K++ D     
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167

Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
               S D+  E  LV    + S S       +L+  R ++    + +S+     LQ  EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDHVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222

Query: 221 TSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 280
             +LYLIS LVSI++AVFLFE+ASP++NSE   FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282

Query: 281 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGG-T 339
           FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGG  
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRX 342

Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 399
           GPVFA+IGAWL YQFQNKD++ KDVS++MF KA+++  +S I+SN GP+D W H GAAF+
Sbjct: 343 GPVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFS 402

Query: 400 GIIYGFLTCPLVQLGDA-----SSRNSQEEGITLIRQYANPCKSLIVFTIFVIILGSFIF 454
           G++YGFLT P+V++ DA     SSR  QE+GI L+R+YANPC+SL  F +F++   S +F
Sbjct: 403 GMLYGFLTSPIVEVNDASSSSSSSRRGQEKGIKLVRKYANPCRSLAFFVLFIMGFISLVF 462

Query: 455 VFEPPLDTLAL 465
             +PP     L
Sbjct: 463 FIQPPFHHFGL 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana] gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana] gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana] gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana]

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/418 (45%), Positives = 269/418 (64%), Gaps = 21/418 (5%)

Query: 49  NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
           N  +R+ S   ++ +AE     +   + S++ S     S + +L +VR ++++  ++ ++
Sbjct: 21  NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80

Query: 109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
           ++L+SY  KL++D  + S  +  +I+    R  E+N   ELDSL AYL KL  DAK    
Sbjct: 81  KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132

Query: 169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIS 228
               + LV++ L + KS       KL+      N    +  + +    + E+T N Y +S
Sbjct: 133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186

Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
           IL SI+V V LFE A+P+RN+  G  SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct: 187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246

Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
           VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN  SFLHT +PTVGGTGP FA+IGA
Sbjct: 247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306

Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
           WL+ Q QNK++I  +  E +FQKAI+ T    I+S+FGP+D W +LGA   GI+YGF TC
Sbjct: 307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGALIAGIVYGFFTC 366

Query: 409 PLVQLGDASSRNSQEEGITLI----RQYANPCKSLIVFTIFV-IILGSFIFVFEPPLD 461
           P++QLG   S   ++EGI  +    +  A+PCKS ++FTIFV +I+ S + + + PLD
Sbjct: 367 PVLQLGSGGSE--RQEGIVTVGPEKQNSADPCKSFLLFTIFVAVIVTSLLLIGDGPLD 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2159808	434	AT5G38510 [Arabidopsis thalian	0.851	0.914	0.459	4.3e-93
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.392	0.374	0.365	1.9e-20
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.433	0.657	0.287	1.3e-15
UNIPROTKB|Q74DX7	279	GSU1188 "Rhomboid-related memb	0.341	0.569	0.309	3.9e-15
TIGR_CMR|GSU_1188	279	GSU_1188 "rhomboid family prot	0.341	0.569	0.309	3.9e-15
UNIPROTKB|Q81VF8	190	BAS0235 "Rhomboid family prote	0.317	0.778	0.314	1.6e-14
TIGR_CMR|BA_0249	190	BA_0249 "rhomboid family prote	0.317	0.778	0.314	1.6e-14
TAIR|locus:2032940	343	RBL10 "RHOMBOID-like protein 1	0.366	0.498	0.268	2e-13
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.452	0.665	0.271	5.9e-12
UNIPROTKB|P46116	281	aarA "Rhomboid protease AarA"	0.201	0.334	0.38	6.8e-12

TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 192/418 (45%), Positives = 269/418 (64%)

Query:    49 NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
             N  +R+ S   ++ +AE     +   + S++ S     S + +L +VR ++++  ++ ++
Sbjct:    21 NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80

Query:   109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
             ++L+SY  KL++D  + S  +  +I+    R  E+N   ELDSL AYL KL  DAK    
Sbjct:    81 KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132

Query:   169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIS 228
                 + LV++ L + KS       KL+      N    +  + +    + E+T N Y +S
Sbjct:   133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186

Query:   229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
             IL SI+V V LFE A+P+RN+  G  SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct:   187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246

Query:   289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
             VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN  SFLHT +PTVGGTGP FA+IGA
Sbjct:   247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306

Query:   349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTC 408
             WL+ Q QNK++I  +  E +FQKAI+ T    I+S+FGP+D W +LGA   GI+YGF TC
Sbjct:   307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGALIAGIVYGFFTC 366

Query:   409 PLVQLGDASSRNSQEEGITLI----RQYANPCKSLIVFTIFV-IILGSFIFVFEPPLD 461
             P++QLG   S   ++EGI  +    +  A+PCKS ++FTIFV +I+ S + + + PLD
Sbjct:   367 PVLQLGSGGSE--RQEGIVTVGPEKQNSADPCKSFLLFTIFVAVIVTSLLLIGDGPLD 422

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 266 (98.7 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 71/194 (36%), Positives = 99/194 (51%)

Query:   225 YLISILVSIDVAVFLFEIA-----SPIR-NSEFGFFSLPLL-YGAKINELILVGEWWRLV 277
             Y I  +  ID+ +F++EI       P + N  FG  S  LL  GAK + LIL GEWWR  
Sbjct:   238 YFIIAISLIDLVMFIWEIIYNGGFEPWKTNPWFGPNSYTLLDVGAKYSPLILNGEWWRFF 297

Query:   278 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT-V 336
             TP+FLH G+FH  ++    L  G Q+ ++YG      IY L G++GNL S +  P    V
Sbjct:   298 TPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQV 357

Query:   337 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 395
             G +G +F  +G  L    +N  ++AK      F   + S   SF +  F P VD +AHLG
Sbjct:   358 GASGAIFGFLGVLLTDLIRNWSVLAKPWLN--FGSLLFSIITSFAVGLFLPGVDNFAHLG 415

Query:   396 AAFTGIIYGFLTCP 409
                 GI+   +  P
Sbjct:   416 GFIAGILTAAIFLP 429

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 60/209 (28%), Positives = 105/209 (50%)

Query:   245 PIRNSEF-GFFSLPL-LYGAKINELILVG-EWWRLVTPMFLHSGLFHVALSCWALLTFGP 301
             P+R + F G  S  L   GA   + ++ G E WRL+T M+LH+G+ H+ ++ + ++ FG 
Sbjct:    66 PLRENPFLGPSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGI 125

Query:   302 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAWLIYQFQNKDLI 360
             ++ + +G     LIY + G  G++ S L   +  +VG +G +  ++GA L     N  + 
Sbjct:   126 RLEQQFGFIRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIY 185

Query:   361 AKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRN 420
                +   +    I+  A++  I     VD +AH+G   TG   GF+     Q G    RN
Sbjct:   186 KSKLCALLSFLFII--AINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQSGWEEFRN 243

Query:   421 SQEEGITLIRQYANPCKSLIVFTIFVIIL 449
             S + G     +Y NPC+ ++ F   V+++
Sbjct:   244 SSQYGARARSKY-NPCQYVLFFVAAVLVV 271

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q74DX7 GSU1188 "Rhomboid-related membrane protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 203 (76.5 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 52/168 (30%), Positives = 79/168 (47%)

Query:   239 LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLT 298
             LF   SP RNS      L LL    +  +   G +W L++  +LH GL H+  +  AL  
Sbjct:    80 LFSALSPGRNS------LLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQ 133

Query:   299 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKD 358
               P V + YG +  F IYTLGG++G + S+L     T+G +  + A+IG+ L Y      
Sbjct:   134 IAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGG 193

Query:   359 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
             L  + V + ++   +       I+     +D W H G    GII  F+
Sbjct:   194 LYGQAVFKEVWGWVVGLFLFGLIVPG---IDNWGHGGGILGGIIMAFI 238

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1188 GSU_1188 "rhomboid family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 203 (76.5 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 52/168 (30%), Positives = 79/168 (47%)

Query:   239 LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLT 298
             LF   SP RNS      L LL    +  +   G +W L++  +LH GL H+  +  AL  
Sbjct:    80 LFSALSPGRNS------LLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQ 133

Query:   299 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKD 358
               P V + YG +  F IYTLGG++G + S+L     T+G +  + A+IG+ L Y      
Sbjct:   134 IAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGG 193

Query:   359 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL 406
             L  + V + ++   +       I+     +D W H G    GII  F+
Sbjct:   194 LYGQAVFKEVWGWVVGLFLFGLIVPG---IDNWGHGGGILGGIIMAFI 238

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 51/162 (31%), Positives = 80/162 (49%)

Query:   253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
             FF  P+   A  +E I  GEWWRL+T +F+H  L H   +   L   G  + K  G F+F
Sbjct:    30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86

Query:   313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQN-KDLIAKDVSERMF 369
              +I+ L GI GN+ S+L  P   +  G +G +F ++GA L   +   +    KD++    
Sbjct:    87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSI 146

Query:   370 QKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
                IL    +F   +  P+   +HL    TG++ G +  PL+
Sbjct:   147 MICIL-LLFTFFNPSANPI---SHL----TGLVIGGICTPLL 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0249 BA_0249 "rhomboid family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 51/162 (31%), Positives = 80/162 (49%)

Query:   253 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 312
             FF  P+   A  +E I  GEWWRL+T +F+H  L H   +   L   G  + K  G F+F
Sbjct:    30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86

Query:   313 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQN-KDLIAKDVSERMF 369
              +I+ L GI GN+ S+L  P   +  G +G +F ++GA L   +   +    KD++    
Sbjct:    87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSI 146

Query:   370 QKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLV 411
                IL    +F   +  P+   +HL    TG++ G +  PL+
Sbjct:   147 MICIL-LLFTFFNPSANPI---SHL----TGLVIGGICTPLL 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 51/190 (26%), Positives = 96/190 (50%)

Query:   228 SILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
             ++L++I+V +++ +IAS  +          L +GAKIN LI  G+ WRL T   LH+   
Sbjct:   131 NVLLAINVIMYIAQIASDGK---------VLTWGAKINSLIERGQLWRLATASVLHANPM 181

Query:   288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGIS-------GNLTSFLHTPEPTVGGTG 340
             H+ ++C++L + GP      GP  F  +Y    ++       G+  S+     P+VG +G
Sbjct:   182 HLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASG 241

Query:   341 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFT 399
              +F ++G+  ++  ++K ++ +  +E + Q A +  AL+  +      +D W H+G    
Sbjct:   242 AIFGLVGSVAVFVIRHKQMV-RGGNEDLMQIAQI-IALNMAMGLMSRRIDNWGHIGGLLG 299

Query:   400 GIIYGFLTCP 409
             G    +L  P
Sbjct:   300 GTAMTWLLGP 309

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0031969 "chloroplast membrane" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 60/221 (27%), Positives = 110/221 (49%)

Query:   235 VAVFLFEIA-SPIR-NSEFGFFSLPL-LYGA-KINELILVGEWWRLVTPMFLHSGLFHVA 290
             VA FL   +  P++ N  FG  S  L   GA +  +++   + WRL++ M+LH+G+ H+ 
Sbjct:    68 VARFLGRFSFQPLKENPLFGPSSSTLEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIHLL 127

Query:   291 LSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVFAIIGAW 349
              +  +L+  G ++ + +G     LIY + G+ G++ S L   E  +VG +G +F ++GA 
Sbjct:   128 TNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQESISVGASGALFGLLGAM 187

Query:   350 LIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCP 409
             L     N  + A   +  +    I+  A++  +     VD +AH+G   TG   GF+   
Sbjct:   188 LSELLTNWTIYANKAAALITLLFII--AINLALGMLPRVDNFAHIGGFLTGFCLGFVLLV 245

Query:   410 LVQLGDASSRNSQEEGITLIRQYANPCKSLIVFTIFVIILG 450
               Q G  +SR +        R+Y+     L V ++ ++++G
Sbjct:   246 RPQYGWEASRTNTSR---TKRKYSMYQYVLFVVSVVLLVVG 283

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|P46116 aarA "Rhomboid protease AarA" [Providencia stuartii (taxid:588)]

 Score = 168 (64.2 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
 Identities = 38/100 (38%), Positives = 55/100 (55%)

Query:   230 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 287
             LV +++AV+ ++I  ASP+ + E       +L+GA I +L L G+WWR    M LHS   
Sbjct:    27 LVLLNIAVYFYQIVFASPLDSRESNL----ILFGANIYQLSLTGDWWRYPISMMLHSNGT 82

Query:   288 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS 327
             H+A +C AL   G    ++YG F    IY + GI   L S
Sbjct:    83 HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFS 122

GO:0008236 "serine-type peptidase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	4e-36
COG0705	228	COG0705, COG0705, Membrane associated serine prote	2e-25
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	1e-11
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	5e-07

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  130 bits (328), Expect = 4e-36
 Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 4/148 (2%)

Query: 267 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 326
           L+  G+ WRL+T MFLH+G  H+  +  ALL FG  + +  G   F L+Y L G++G+L 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 327 SFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 384
           S+L +P   P+VG +G +F ++GA L+   +N+ L+            +    L+ ++  
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILL--FNFPGALLLLLGIILLNLLLGF 118

Query: 385 FGPVDTWAHLGAAFTGIIYGFLTCPLVQ 412
              +  +AHLG    G++ GFL     Q
Sbjct: 119 LPGISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score =  103 bits (259), Expect = 2e-25
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 9/198 (4%)

Query: 225 YLISILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFL 282
            +   L+ +++ VFL E+             F L  LY   +   +   + WRL+T +FL
Sbjct: 18  PVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFL 77

Query: 283 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGT 339
           H+G  H+  +  AL  FG  + +  G   F L Y L G+   L   L  P+   P++G +
Sbjct: 78  HAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGAS 137

Query: 340 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL-SFIISNFGP---VDTWAHLG 395
           G +F ++GA+ +     + L+      R     IL   L S           V   AHLG
Sbjct: 138 GAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLG 197

Query: 396 AAFTGIIYGFLTCPLVQL 413
               G++   L    ++ 
Sbjct: 198 GLIGGLLLAALLSRKLRK 215

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 35/195 (17%)

Query: 224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLH 283
           +++IS  VSI  A FL    S           L +  GA +   I  GE  RL+ P+FLH
Sbjct: 66  VFIIS--VSIKPADFLTPSDS-----------LLVTLGANVASRIKQGEIHRLILPIFLH 112

Query: 284 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPV 342
           + +FH   + +  L  G  + K+YG     ++Y L GI GN+ S   T  P  VG +   
Sbjct: 113 ANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSG 172

Query: 343 FAIIG--------AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS---NFGPVDTW 391
             ++G         W + + +          ER+    I  + +SF      N   +D  
Sbjct: 173 MGLLGIVTSELILLWHVIRHR----------ERVVFNIIFFSLISFFYYFTFNGSNIDHV 222

Query: 392 AHLGAAFTGIIYGFL 406
            HLG   +GI  G L
Sbjct: 223 GHLGGLLSGISMGIL 237

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 28/157 (17%)

Query: 266 ELILVGEWWRLVTPMFLHSGLFHVALSCWALLT----FGPQVCKSYGPFTFFLIYTLGGI 321
             IL GEWWRL+T  F+H   +H+ ++   LL     F              L+  L  +
Sbjct: 9   AAILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERH----LRARRLLLLLLLLSL 64

Query: 322 SGNLTSFLHTPEPT--VGGTGPVFAIIGAWLIYQFQNKD---------LIAKDVSERMFQ 370
             +L   L  P     VG +G +  +     +   +            +IAK   E    
Sbjct: 65  LISLGLLLFLPSLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLLLLGVIAKLAWE---- 120

Query: 371 KAILSTALSFIISNF--GPVDTWAHLGAAFTGIIYGF 405
                   S   +     PV T AHL  A +G++   
Sbjct: 121 ---QLFGASASTAELIGAPVATEAHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
PTZ00101	278	rhomboid-1 protease; Provisional	99.98
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.91
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.86
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.85
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.65
KOG2980	310	consensus Integral membrane protease of the rhombo	98.87
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.51
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.18
KOG0858	239	consensus Predicted membrane protein [Function unk	97.88
KOG2890	326	consensus Predicted membrane protein [Function unk	97.25
COG5291	313	Predicted membrane protein [Function unknown]	95.3
KOG4463	323	consensus Uncharacterized conserved protein [Funct	93.94

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.98  E-value=2.4e-31  Score=264.07  Aligned_cols=195  Identities=26%  Similarity=0.325  Sum_probs=150.2

Q ss_pred             HhhhccccccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHH
Q 012312          214 ALQRTEETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSC  293 (466)
Q Consensus       214 ~~~~~~~~~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nm  293 (466)
                      .++..+....+.+|..++++++++|++...................+|++.++.+.++||||++|++|+|.|+.|+++||
T Consensus        43 ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm  122 (278)
T PTZ00101         43 LNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV  122 (278)
T ss_pred             HHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHH
Confidence            55678888999999999999999999987643211100111235678888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCC-CcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Q 012312          294 WALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA  372 (466)
Q Consensus       294 l~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p-~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~  372 (466)
                      ++++.+|..+|+.+|++|++.+|+++|++|++++.++.+ ..++||||++||++|+++......|......  .+.....
T Consensus       123 ~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~--~~~~~~~  200 (278)
T PTZ00101        123 FFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHR--ERVVFNI  200 (278)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHH
Confidence            999999999999999999999999999999999988765 4689999999999999987665555443221  1111111


Q ss_pred             HHHHHHHH--Hh-hcCCcHHHHHHHHHHHHHHHHHHHhccc
Q 012312          373 ILSTALSF--II-SNFGPVDTWAHLGAAFTGIIYGFLTCPL  410 (466)
Q Consensus       373 il~~~l~~--~l-~~~~~i~~~aHLgG~l~G~l~g~l~~~~  410 (466)
                      +++..+.+  .. ...+++|++||+||+++|+++|+++.++
T Consensus       201 i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~  241 (278)
T PTZ00101        201 IFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ  241 (278)
T ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            11111111  11 2247799999999999999999998664

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=5.1e-27  Score=233.34  Aligned_cols=177  Identities=18%  Similarity=0.135  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHHH
Q 012312          224 LYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQV  303 (466)
Q Consensus       224 p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~l  303 (466)
                      .++|..++++|++||++........        ...+..........+||||++|++|+|.|+.|+++||+++|.+|..+
T Consensus        94 ~p~T~~li~i~i~vf~l~~~~~~~~--------~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~i  165 (276)
T PRK10907         94 GPLTLGVMIACVVVFILMQILGDQT--------VMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAV  165 (276)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccHH--------HHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3588899999999999876643211        01111111122457899999999999999999999999999999999


Q ss_pred             HHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 012312          304 CKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS  383 (466)
Q Consensus       304 E~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~  383 (466)
                      |+.+|+++++.+|++++++|+++++++.+...+|+||+|||++|+.......... .....+..+....++.+.+.+.-.
T Consensus       166 E~~~G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~-~~~~lp~~~~~f~llwl~~g~~~~  244 (276)
T PRK10907        166 EKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQ-SGIYLPRGLIAFALLWLVAGYFDL  244 (276)
T ss_pred             HHHHChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999988887777899999999999986554322221 111122222222222222333222


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhcc
Q 012312          384 NFGPVDTWAHLGAAFTGIIYGFLTCP  409 (466)
Q Consensus       384 ~~~~i~~~aHLgG~l~G~l~g~l~~~  409 (466)
                      ...++++.||++|+++|+++|++..+
T Consensus       245 ~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        245 FGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            34679999999999999999998754

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-28  Score=246.25  Aligned_cols=161  Identities=30%  Similarity=0.499  Sum_probs=140.4

Q ss_pred             hhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC-cc
Q 012312          257 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PT  335 (466)
Q Consensus       257 p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~-~~  335 (466)
                      ....+......++.+|+||++||+|+|+|+.||++||+.++++|..+|..+|.+|+.++|++||++|++++.++++. .+
T Consensus       103 ~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~s  182 (316)
T KOG2289|consen  103 EKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSIS  182 (316)
T ss_pred             cccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCce
Confidence            34556667677899999999999999999999999999999999999999999999999999999999999999986 59


Q ss_pred             cCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccccccCC
Q 012312          336 VGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD  415 (466)
Q Consensus       336 vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~  415 (466)
                      |||||++|||+||++.....||..+.....  ....+++++.++..++..+++++++|+||+++|..+|++..+..++..
T Consensus       183 VGASggvfaLlgA~Ls~l~~Nw~~m~~~~~--~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~  260 (316)
T KOG2289|consen  183 VGASGGVFALLGAHLSNLLTNWTIMKNKFA--ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGG  260 (316)
T ss_pred             ecccHHHHHHHHHHHHHHHhhHHHhcchHH--HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeE
Confidence            999999999999999999999998764332  334455555667777888999999999999999999999998887776


Q ss_pred             cccc
Q 012312          416 ASSR  419 (466)
Q Consensus       416 ~~~~  419 (466)
                      ...+
T Consensus       261 ~~~~  264 (316)
T KOG2289|consen  261 ITIG  264 (316)
T ss_pred             Eecc
Confidence            5443

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.91  E-value=6.6e-24  Score=205.45  Aligned_cols=190  Identities=24%  Similarity=0.431  Sum_probs=140.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCccccc--chhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHH
Q 012312          223 NLYLISILVSIDVAVFLFEIASPIRNSEFGF--FSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFG  300 (466)
Q Consensus       223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~--~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG  300 (466)
                      .++++..++++|+++|+++............  ......++..........||||++|++|+|.|+.|+++||+.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            5778899999999999998765432111000  00000111111111111189999999999999999999999999999


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC---cccCChhHHHHHHHHHHHHHhccchhhhhh-hhHHHHHHHHHHH
Q 012312          301 PQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILST  376 (466)
Q Consensus       301 ~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~---~~vGaSGaVfGLlga~~~~~~~~~~~l~~~-~~~~~~~~~il~~  376 (466)
                      ..+|+.+|+.+|+.+|+++|+++++++..+.+.   +.+||||++||++++++...+..+...... .+..+.....+..
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  175 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL  175 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence            999999999999999999999999998888763   599999999999999999988766654433 3344333333444


Q ss_pred             HHHHHhhcCC---cHHHHHHHHHHHHHHHHHHHhccccc
Q 012312          377 ALSFIISNFG---PVDTWAHLGAAFTGIIYGFLTCPLVQ  412 (466)
Q Consensus       377 ~l~~~l~~~~---~i~~~aHLgG~l~G~l~g~l~~~~~~  412 (466)
                      ...++.....   ++++.||++|+++|++++..+.++.+
T Consensus       176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~  214 (228)
T COG0705         176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR  214 (228)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4444443333   69999999999999999999877544

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.86  E-value=3.9e-22  Score=203.37  Aligned_cols=174  Identities=28%  Similarity=0.446  Sum_probs=141.4

Q ss_pred             cCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC-cccCChhHHHHHHHH
Q 012312          270 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGA  348 (466)
Q Consensus       270 ~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~-~~vGaSGaVfGLlga  348 (466)
                      ..|+|||+||.|+|+|+.|++..+.+++.+.+.+|+..|+.|+.++|+++|+.||+++.++.|. +.||.||+-||++++
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~  527 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC  527 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence            4599999999999999999999999999999999999999999999999999999999999984 799999999999999


Q ss_pred             HHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccccccCCccccCccchhhHH
Q 012312          349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGDASSRNSQEEGITL  428 (466)
Q Consensus       349 ~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      ..+...++|..+..++.  .+..++.. .+.+..+..|+||||||+.|+++|++..+++.|++.+++...          
T Consensus       528 l~vEl~qs~~il~~~w~--a~~~Lia~-~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~----------  594 (652)
T KOG2290|consen  528 LFVELFQSWQILERPWR--AFFHLIAT-LLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL----------  594 (652)
T ss_pred             HHHHHHhhhHhhhhHHH--HHHHHHHH-HHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhh----------
Confidence            99999999998876433  33222222 222233778999999999999999999999999998877432          


Q ss_pred             hhhccccchhHHHHHHHHHHHHH--HHHhhcCC
Q 012312          429 IRQYANPCKSLIVFTIFVIILGS--FIFVFEPP  459 (466)
Q Consensus       429 ~r~~~~~~~~ll~f~i~vivl~~--~lf~~~pp  459 (466)
                         |...+.+++..++|.+++..  ++|+..|.
T Consensus       595 ---yrKr~~ilIs~ivf~~Lla~Lvv~fy~~~i  624 (652)
T KOG2290|consen  595 ---YRKRFYILISQIVFSGLLAILVVVFYNYPI  624 (652)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHheeeccc
Confidence               12235566666666666655  45555553

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.85  E-value=4.3e-22  Score=178.27  Aligned_cols=140  Identities=31%  Similarity=0.614  Sum_probs=106.6

Q ss_pred             hcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcccCCC--cccCChhHHHHHH
Q 012312          269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAII  346 (466)
Q Consensus       269 ~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~--~~vGaSGaVfGLl  346 (466)
                      +++||||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|++++++++++..++.+.  ..+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            57899999999999999999999999999999999999999999999999999999999887664  5999999999999


Q ss_pred             HHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccc
Q 012312          347 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPL  410 (466)
Q Consensus       347 ga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~  410 (466)
                      ++.+...+..+........  ..........+.+.....+++++.+|++|+++|++++..+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~  143 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYL--ALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRR  143 (145)
T ss_dssp             HHHHHHHHCCCCCS---HC--CCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred             HHHHHHHhhccchhhcchH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999998877554331000  0000111122233334468899999999999999999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.65  E-value=8.8e-16  Score=149.20  Aligned_cols=172  Identities=19%  Similarity=0.240  Sum_probs=129.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH
Q 012312          222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP  301 (466)
Q Consensus       222 ~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~  301 (466)
                      ..|.+|..++.++.++|++.......          -.+ .+....+.+.|.||++||+++|.+..|+++||+++|.+|.
T Consensus        13 ~~p~~ts~~~~~~~~i~lv~~~~~i~----------~~~-~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~   81 (258)
T KOG2632|consen   13 KIPLLTSIVVVLAILIYLVSFFPGIV----------EVL-GLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGS   81 (258)
T ss_pred             cchHHHHHHHHHHHHHHHHhccchhh----------hHh-cCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchh
Confidence            45778888899999999886543321          011 1223556788999999999999999999999999999999


Q ss_pred             HHHHhhc-hhHHHHHHHHHHHHhhhhhcccC------C----CcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHH
Q 012312          302 QVCKSYG-PFTFFLIYTLGGISGNLTSFLHT------P----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQ  370 (466)
Q Consensus       302 ~lE~~~G-~~r~l~lyl~sgi~G~l~s~l~~------p----~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~  370 (466)
                      .+|+.+| +.+++....+.++..+++..+..      +    ...+|.||..||+++......+.+..........+.+.
T Consensus        82 ~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l  161 (258)
T KOG2632|consen   82 QFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVL  161 (258)
T ss_pred             HHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHH
Confidence            9999999 88888888888888887765443      2    34799999999999998888777665544433233333


Q ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Q 012312          371 KAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFL  406 (466)
Q Consensus       371 ~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l  406 (466)
                      ..++.++...+  ..++.+.++|++|+++|+.+++-
T Consensus       162 ~Pw~lLi~~~~--lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  162 APWALLIATQI--LVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHHH
Confidence            33333322212  24889999999999999999984

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.87  E-value=2.7e-09  Score=105.96  Aligned_cols=179  Identities=20%  Similarity=0.270  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH-HHH
Q 012312          226 LISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP-QVC  304 (466)
Q Consensus       226 vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~-~lE  304 (466)
                      +...++++|+++|..+.....+....     +.   ...+..-..+ -|.+++|.|.|.+.+|+..||+.++.+.. .+-
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~~-----~~---mls~~~~~t~-~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~  187 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTMI-----PW---MLSRNAYKTG-CWKIILSTFSHYSALHLGPNMLVLKSYLAGALK  187 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhhh-----hH---Hhhccccccc-ceeEEeehhcchhHhhhcHHHHHHHHHhccccc
Confidence            77899999999998876543221110     00   0111111233 45599999999999999999999998888 788


Q ss_pred             HhhchhHHHHHHHHHHHHhhhhhccc-CC----CcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHH----HHHHHH
Q 012312          305 KSYGPFTFFLIYTLGGISGNLTSFLH-TP----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF----QKAILS  375 (466)
Q Consensus       305 ~~~G~~r~l~lyl~sgi~G~l~s~l~-~p----~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~----~~~il~  375 (466)
                      ..+|...+..+|+.++..|......- .+    .+.+||||+++++++..+..+|.....+....+....    ..++..
T Consensus       188 ~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~  267 (310)
T KOG2980|consen  188 GSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAA  267 (310)
T ss_pred             CCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHH
Confidence            88999999999997676666654433 11    4689999999999999999988766654432222211    112222


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhcccccc
Q 012312          376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQL  413 (466)
Q Consensus       376 ~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~  413 (466)
                      ..+..+......-|+.||++|.+.|..++.+..+++..
T Consensus       268 ~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~k  305 (310)
T KOG2980|consen  268 YDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIRK  305 (310)
T ss_pred             hhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHHc
Confidence            22222222335577889999999999999988776543

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.51  E-value=1.4e-06  Score=83.17  Aligned_cols=173  Identities=15%  Similarity=0.156  Sum_probs=105.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCH-HHHHHHHHHHHHHHH
Q 012312          223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL-FHVALSCWALLTFGP  301 (466)
Q Consensus       223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~-~HLl~Nml~Ll~fG~  301 (466)
                      .|++|..+++..+++-++....-..         |...--.++..+.++|+||++|+.|.-++. .+.++|++.++..+.
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~---------~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~   71 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIIS---------PYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSS   71 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCC---------HHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhh
Confidence            3788988888888877765432111         222222233345679999999999986554 799999999999999


Q ss_pred             HHHHh-hch--hHHHHHHHHHHHHhhhhhcccCCC---cccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHH
Q 012312          302 QVCKS-YGP--FTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS  375 (466)
Q Consensus       302 ~lE~~-~G~--~r~l~lyl~sgi~G~l~s~l~~p~---~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~  375 (466)
                      .+|+. ++.  ..++...+.+++.-.+++.+....   ...-..+-.+.++=.++-..+.......+.++.+....-++.
T Consensus        72 ~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~  151 (197)
T PF04511_consen   72 SLEEGHFQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVL  151 (197)
T ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHH
Confidence            99998 332  467777666666655555543321   011112233333333444434333333332344444445555


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Q 012312          376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFLT  407 (466)
Q Consensus       376 ~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~  407 (466)
                      +++.++.+.   .+...++-|+++|-++-++-
T Consensus       152 ~~~~~l~~~---~~~~~~l~Gi~~Ghly~fl~  180 (197)
T PF04511_consen  152 LAFSLLFGG---SSPIPDLLGILVGHLYYFLK  180 (197)
T ss_pred             HHHHHHhCC---CcHHHHHHHHHHHHHHHHHH
Confidence            566655543   24568999999999998774

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.18  E-value=4.2e-07  Score=77.55  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=54.5

Q ss_pred             cceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcc
Q 012312          272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL  329 (466)
Q Consensus       272 q~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l  329 (466)
                      .+|+++|+.|++.++..+++|.+.++..|+.+|+.||++.++..+++.+++.|+...+
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~   64 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFL   64 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHH
Confidence            7899999999999999999999999999999999999999999999999998887544

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.88  E-value=4e-05  Score=74.41  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCC-HHHHHHHHHHHHH
Q 012312          220 ETSNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG-LFHVALSCWALLT  298 (466)
Q Consensus       220 ~~~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g-~~HLl~Nml~Ll~  298 (466)
                      ....|++|.....+|++.=++....-..         |...--.++-.+++.|+||++|+.+.-.. -+|.++||+.++-
T Consensus         9 ~~~iPpVTR~~~~~~v~tt~~~~l~lIs---------P~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~Flyr   79 (239)
T KOG0858|consen    9 YLQIPPVTRYYTTACVVTTLLVRLDLIS---------PFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYR   79 (239)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHhhcccC---------chheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHH
Confidence            3577899999999988887765432111         21111122234588999999999988865 6999999999999


Q ss_pred             HHHHHHHhh---chhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHH
Q 012312          299 FGPQVCKSY---GPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS  375 (466)
Q Consensus       299 fG~~lE~~~---G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~  375 (466)
                      .++.||+-.   -+..|+.+.+++++.-.+.+.... ...+| ++-++.+.=.|+-..+.......+.+..+....-+++
T Consensus        80 Y~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~-~~fLg-~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvl  157 (239)
T KOG0858|consen   80 YSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVY-IVFLG-QSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVL  157 (239)
T ss_pred             HHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHH
Confidence            999999853   236788888888877665554211 01111 1111111111111111111111122233334445556


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Q 012312          376 TALSFIISNFGPVDTWAHLGAAFTGIIYGFL  406 (466)
Q Consensus       376 ~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l  406 (466)
                      .++.++.+.   .+ ..-+-|+++|-++-++
T Consensus       158 l~fs~l~g~---~~-~~dllGi~~GHiy~fl  184 (239)
T KOG0858|consen  158 LGFSFLFGG---SI-LVDLLGIIVGHIYYFL  184 (239)
T ss_pred             HHHHHHhCC---ch-HHHHHhhhhheeEEEE
Confidence            666666532   23 7778888888776544

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.25  E-value=0.00042  Score=69.41  Aligned_cols=143  Identities=20%  Similarity=0.210  Sum_probs=94.5

Q ss_pred             cceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhc--------ccCC-----CcccCC
Q 012312          272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF--------LHTP-----EPTVGG  338 (466)
Q Consensus       272 q~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~--------l~~p-----~~~vGa  338 (466)
                      ..|+++|+.|+-.+++..++|++.+.+-|..+|+.||+..++..|.+.-..-+++..        +...     .+..|.
T Consensus        66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~  145 (326)
T KOG2890|consen   66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGT  145 (326)
T ss_pred             hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccc
Confidence            689999999999999999999999999999999999999999888765444443321        1111     247899


Q ss_pred             hhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhccccccCC
Q 012312          339 TGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLTCPLVQLGD  415 (466)
Q Consensus       339 SGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l~~~~~i~~~aHLgG~l~G~l~g~l~~~~~~~~~  415 (466)
                      .|.+.|++.++=-.++..-..............-++.+.+.+++.. -.....+.+..+..|...+|.+++..+...
T Consensus       146 ~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i-~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~  221 (326)
T KOG2890|consen  146 TGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSI-ITFLVFASLPSITFGVLVSWTYLRFYQRHP  221 (326)
T ss_pred             hHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHH-HHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence            9999999998877766542211110000000000111111111111 123466778888899999999988777554

>COG5291 Predicted membrane protein [Function unknown]

Probab=95.30  E-value=0.02  Score=56.02  Aligned_cols=80  Identities=10%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCC-HHHHHHHHHHHHHHH
Q 012312          222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG-LFHVALSCWALLTFG  300 (466)
Q Consensus       222 ~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g-~~HLl~Nml~Ll~fG  300 (466)
                      ..|++|..+..+..++-++....-..         |...-..++-.+++-||||++|+..+-++ -+..++|+++++--.
T Consensus        18 ~IPPITRy~~ll~~a~til~~~~lvs---------Pwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS   88 (313)
T COG5291          18 RIPPITRYMTLLISAVTILVYVDLVS---------PWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYS   88 (313)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhhcC---------ccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence            36777776666666555544332111         11001112233567799999997766554 588999999999999


Q ss_pred             HHHHH-hhchh
Q 012312          301 PQVCK-SYGPF  310 (466)
Q Consensus       301 ~~lE~-~~G~~  310 (466)
                      +.||+ .+|+.
T Consensus        89 ~~LE~g~f~~~   99 (313)
T COG5291          89 RMLEEGCFNTS   99 (313)
T ss_pred             HHHhccccCcc
Confidence            99998 45655

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.039  Score=54.60  Aligned_cols=60  Identities=15%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             hcCcceeeeecccccCCHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhhcc
Q 012312          269 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL  329 (466)
Q Consensus       269 ~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~lE~~~G~~r~l~lyl~sgi~G~l~s~l  329 (466)
                      ...|+||++.+-|.-.+--.+.+-++.++. -+.+||.+|+.||..+.+.+++.+.++.+.
T Consensus        47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~-fR~~ERlLGShky~~fiv~s~~~~~l~~~i  106 (323)
T KOG4463|consen   47 KYFQYWRLLMSQFAFSNTPELMFGLYILYY-FRVFERLLGSHKYSVFIVFSGTVSLLLEVI  106 (323)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHHhccccceeehhHHHHHHHHHHHH
Confidence            447999999999999999888888777666 568999999999999999999888876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	466
2nr9_A	196	Crystal Structure Of Glpg, Rhomboid Peptidase From		3e-06

>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From Haemophilus Influenzae Length = 196

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 272 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLG-GISGNLTSFLH 330
           E WR ++   +H    H+  +      FG  + +++G     ++Y +   I+G + +++ 
Sbjct: 49  EVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS 108
Query: 331 TPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG-PVD 389
            P    G +G V+A++G   I    N  L   D+ E  F   ++  AL FI   FG  + 
Sbjct: 109 GP-AFFGLSGVVYAVLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMG 165
Query: 390 TWAHLGAAFTGIIYGFLTCPL 410
             AH+     G+I+GF+   L
Sbjct: 166 NAAHISGLIVGLIWGFIDSKL 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	4e-37
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	5e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  133 bits (337), Expect = 4e-37
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 11/183 (6%)

Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 284
            +  IL ++ V +++ +      +  +        Y A   +     E WR ++   +H 
Sbjct: 10  KITLILTALCVLIYIAQQLGFEDDIMYLMH-----YPAYEEQD---SEVWRYISHTLVHL 61

Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFA 344
              H+  +      FG  + +++G     ++Y +            +     G +G V+A
Sbjct: 62  SNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYA 121

Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIY 403
           ++G   I    N  L   D+ E  F   ++  AL FI   FG  +   AH+     G+I+
Sbjct: 122 VLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIW 179

Query: 404 GFL 406
           GF+
Sbjct: 180 GFI 182

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  127 bits (322), Expect = 5e-35
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 9/182 (4%)

Query: 225 YLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 284
            +  +++   V VF+                  +L+ A   +  L  E+WR  T   +H 
Sbjct: 5   PVTWVMMIACVVVFIAMQ--------ILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHF 56

Query: 285 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFA 344
            L H+  +       G  V K  G     +I  +  +         +     G +G V+A
Sbjct: 57  SLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYA 116

Query: 345 IIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYG 404
           ++G   +   ++       +   +   A++     +       +   AH+     G+   
Sbjct: 117 LMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMA 175

Query: 405 FL 406
           F+
Sbjct: 176 FV 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 60/424 (14%), Positives = 117/424 (27%), Gaps = 111/424 (26%)

Query: 25  QNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSK 84
           Q +  FK   ++L   +   +  + + K    I PN            SNI   + S   
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSI-- 230

Query: 85  KASTKEKLRM-------VRC-----------AAKSSDSECQIRILESYLAKLKDDSIQN- 125
               + +LR          C           A  + +  C+I      L   +   + + 
Sbjct: 231 ----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------LLTTRFKQVTDF 280

Query: 126 -SSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISK 184
            S+ ++  I   H         T  +     L  L+   +    +    N     LSI  
Sbjct: 281 LSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIA 334

Query: 185 SSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLISILVSIDVAVFLFEIAS 244
            S R  +     ++ +        +E  L +    E   ++         ++VF      
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-------RLSVFPPSAHI 387

Query: 245 PIRNSEFGFFSLPLLYGAKI--------NELI---LVGEWWRLVTPMFLHSGLF------ 287
           P          L L++   I        N+L    LV +  +  T + + S         
Sbjct: 388 PTI-------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKL 439

Query: 288 ------HVAL-------SCWALLTFGPQVCKSYGPFTFFLIYTLGGI--SGNLTSF---- 328
                 H ++         +      P     Y  F   + + L  I     +T F    
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 329 ---------LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALS 379
                    +         +G +   +     Y    K  I  +  +    + +++  L 
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKY---ERLVNAILD 550

Query: 380 FIIS 383
           F+  
Sbjct: 551 FLPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.95

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=3.8e-28  Score=226.50  Aligned_cols=178  Identities=16%  Similarity=0.130  Sum_probs=131.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012312          223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  302 (466)
Q Consensus       223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~  302 (466)
                      .|++|..++++|+++|+++...+...        ...+.+..+..+.++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~   74 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGDQE--------VMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA   74 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHH--------HHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            46799999999999999986543210        1122222223467899999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHh
Q 012312          303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  382 (466)
Q Consensus       303 lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l  382 (466)
                      +|+.+|++|++.+|++++++|+++++++.+...+||||++||++++.++.....+... ..++.++.....+.+.+.+..
T Consensus        75 ~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~  153 (181)
T 2xov_A           75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFD  153 (181)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCce-eeeHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888776799999999999998765332222211 011222222222222222222


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhcc
Q 012312          383 SNFGPVDTWAHLGAAFTGIIYGFLTCP  409 (466)
Q Consensus       383 ~~~~~i~~~aHLgG~l~G~l~g~l~~~  409 (466)
                      ...+++|++||++|+++|+++++++.+
T Consensus       154 ~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          154 LFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHhc
Confidence            223589999999999999999998754

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.95  E-value=1.8e-28  Score=231.44  Aligned_cols=179  Identities=18%  Similarity=0.307  Sum_probs=132.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHH
Q 012312          222 SNLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP  301 (466)
Q Consensus       222 ~~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~  301 (466)
                      ..+++|..++++|+++|+++...+...        ...+.+..+..+..+||||++|++|+|.|+.|+++||+.++.+|.
T Consensus         7 ~~~pvt~~li~~~v~vfll~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~   78 (196)
T 2nr9_A            7 QQGKITLILTALCVLIYIAQQLGFEDD--------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGG   78 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCcHH--------HHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            446799999999999999987543210        112222222345789999999999999999999999999999999


Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHH
Q 012312          302 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI  381 (466)
Q Consensus       302 ~lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~  381 (466)
                      .+|+.+|++|++.+|++++++|+++++++.+...+||||++||++++.+...........  .+..+...+.+.+.+.+.
T Consensus        79 ~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  156 (196)
T 2nr9_A           79 MIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFD--LPEGFFTMLLVGIALGFI  156 (196)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCC--CCCSSTTTTTTTTTHHHH
T ss_pred             HHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhc--chHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887767999999999999987665333322111  111111111111122222


Q ss_pred             hh-cCCcHHHHHHHHHHHHHHHHHHHhccc
Q 012312          382 IS-NFGPVDTWAHLGAAFTGIIYGFLTCPL  410 (466)
Q Consensus       382 l~-~~~~i~~~aHLgG~l~G~l~g~l~~~~  410 (466)
                      .. ..+++|++||+||+++|+++++++.++
T Consensus       157 ~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          157 SPLFGVEMGNAAHISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             SCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            11 234799999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-27
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	1e-25

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (261), Expect = 5e-27
 Identities = 28/179 (15%), Positives = 59/179 (32%), Gaps = 9/179 (5%)

Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
           +++   V VF+                  +L+ A   +  L  E+WR  T   +H  L H
Sbjct: 9   VMMIACVVVFIAMQ--------ILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMH 60

Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
           +  +       G  V K  G     +I  +  +         +     G +G V+A++G 
Sbjct: 61  ILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGY 120

Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTGIIYGFLT 407
             +   ++       +   +   A++     +       +   AH+     G+   F+ 
Sbjct: 121 VWLRGERDPQSGI-YLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score =  101 bits (252), Expect = 1e-25
 Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 229 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 288
           IL ++ V +++ +      +  +                    E WR ++   +H    H
Sbjct: 11  ILTALCVLIYIAQQLGFEDDIMYLMHYPAYE--------EQDSEVWRYISHTLVHLSNLH 62

Query: 289 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 348
           +  +      FG  + +++G     ++Y +            +     G +G V+A++G 
Sbjct: 63  ILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGY 122

Query: 349 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFTGIIYGFL 406
             I    N  L   D+ E  F   ++  AL FI   FG  +   AH+     G+I+GF+
Sbjct: 123 VFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFI 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.94
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.93

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.9e-27  Score=214.72  Aligned_cols=176  Identities=16%  Similarity=0.139  Sum_probs=136.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012312          223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  302 (466)
Q Consensus       223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~  302 (466)
                      .+++|..++++|+++|+.....+...        ...+.....+.+.++||||++|++|+|.|+.|+++||+.++.+|+.
T Consensus         3 ~~pvT~~li~i~~~vf~~~~~~~~~~--------~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~   74 (180)
T d3b45a1           3 AGPVTWVMMIACVVVFIAMQILGDQE--------VMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA   74 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHH--------HHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45789999999999999865443211        1223333335567899999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHh
Q 012312          303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  382 (466)
Q Consensus       303 lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l  382 (466)
                      +|+.+|++|++.+|+++++.|++++.++.++...|+||+++|++++.......++..... .+........+.....+..
T Consensus        75 lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  153 (180)
T d3b45a1          75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY-LQRGLIIFALIWIVAGWFD  153 (180)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC-CCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccchhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhHHh-hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988889999999999999888876655443222 2222222222222222223


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHh
Q 012312          383 SNFGPVDTWAHLGAAFTGIIYGFLT  407 (466)
Q Consensus       383 ~~~~~i~~~aHLgG~l~G~l~g~l~  407 (466)
                      ...+++++.||++|+++|+++|++.
T Consensus       154 ~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         154 LFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999975

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=5.8e-27  Score=217.28  Aligned_cols=177  Identities=18%  Similarity=0.275  Sum_probs=135.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhhhhhhchhhhhhhcCcceeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012312          223 NLYLISILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  302 (466)
Q Consensus       223 ~p~vt~~Li~inv~VFl~~~~~~~~~~~~~~~~~p~~~ga~~~~~I~~gq~WRL~Ts~FlH~g~~HLl~Nml~Ll~fG~~  302 (466)
                      .+++|.+++++|+++|+++.......        ...+.........++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~   76 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFEDD--------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGM   76 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            35799999999999999876432110        0111111223457899999999999999999999999999999999


Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhhcccCCCcccCChhHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHh
Q 012312          303 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  382 (466)
Q Consensus       303 lE~~~G~~r~l~lyl~sgi~G~l~s~l~~p~~~vGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~~~~~~il~~~l~~~l  382 (466)
                      +|+.+|+++++.+|++++++|++++.+..+...+|+||+++|++++.+...+.++.........  ...+++.+.+.+..
T Consensus        77 ~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  154 (189)
T d2nr9a1          77 IERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGF--FTMLLVGIALGFIS  154 (189)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSS--TTTTTTTTTHHHHS
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhHhccHHHH--HHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888899999999999999888877666543221111  11112222233333


Q ss_pred             h-cCCcHHHHHHHHHHHHHHHHHHHhcc
Q 012312          383 S-NFGPVDTWAHLGAAFTGIIYGFLTCP  409 (466)
Q Consensus       383 ~-~~~~i~~~aHLgG~l~G~l~g~l~~~  409 (466)
                      . ..++++++||++|+++|+++|++..+
T Consensus       155 ~~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         155 PLFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             CSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            2 34679999999999999999998754